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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015764 Bordetella pertussis strain VA-198, complete genome 5 crisprs cas3,csa3,DEDDh 0 0 28 0

Results visualization

1. NZ_CP015764
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015764_1 31195-31289 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015764_2 1210581-1210708 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015764_3 2467330-2467439 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015764_4 2841812-2841896 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015764_5 3577465-3577558 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 11808 : 82075 57 Streptococcus_phage(14.29%) transposase NA
DBSCAN-SWA_2 94292 : 151671 46 uncultured_Mediterranean_phage(37.5%) tRNA,transposase,holin NA
DBSCAN-SWA_3 187022 : 252607 53 Erysipelothrix_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_4 415164 : 481664 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_5 509835 : 537250 28 Emiliania_huxleyi_virus(25.0%) transposase,protease NA
DBSCAN-SWA_6 631947 : 691859 56 Streptococcus_virus(12.5%) tRNA,transposase NA
DBSCAN-SWA_7 737030 : 792621 49 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_8 1112789 : 1160805 44 Moraxella_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_9 1222367 : 1281636 52 Klosneuvirus(40.0%) tRNA,transposase,protease NA
DBSCAN-SWA_10 1291876 : 1336199 46 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_11 1349405 : 1410181 50 Erysipelothrix_phage(20.0%) transposase NA
DBSCAN-SWA_12 1571066 : 1636787 60 Salmonella_phage(15.38%) tRNA,transposase,protease NA
DBSCAN-SWA_13 1722904 : 1763573 45 Salmonella_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_14 1819037 : 1891907 59 Moraxella_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_15 1895050 : 1961861 49 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_16 1992246 : 2032484 39 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_17 2416932 : 2470673 50 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_18 2476828 : 2536129 48 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_19 2551067 : 2609140 47 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_20 2618940 : 2690281 59 Paramecium_bursaria_Chlorella_virus(20.0%) tRNA,transposase NA
DBSCAN-SWA_21 2760103 : 2814296 54 Paramecium_bursaria_Chlorella_virus(14.29%) transposase,protease NA
DBSCAN-SWA_22 2824912 : 2876821 42 uncultured_Caudovirales_phage(33.33%) tRNA,transposase,protease NA
DBSCAN-SWA_23 2917234 : 2985060 60 Bacillus_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_24 3012883 : 3048823 33 Sphingobium_phage(33.33%) transposase NA
DBSCAN-SWA_25 3103152 : 3170315 59 Planktothrix_phage(37.5%) tRNA,transposase NA
DBSCAN-SWA_26 3735851 : 3849605 114 uncultured_Caudovirales_phage(14.29%) tRNA,terminase,tail,transposase,protease NA
DBSCAN-SWA_27 3855771 : 3911799 51 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_28 4034388 : 4102364 59 Bacillus_phage(33.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage