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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015626 Staphylococcus pseudintermedius strain 063228 chromosome, complete genome 4 crisprs WYL,RT,PrimPol,cas3,DinG,csa3,DEDDh,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6 0 7 14 1

Results visualization

1. NZ_CP015626
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015626_1 108638-108750 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015626_2 590452-590572 Orphan NA
1 spacers
RT,PrimPol

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015626_3 2664628-2664874 TypeIII NA
3 spacers
cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015626_4 2673598-2673845 TypeIII NA
3 spacers
cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,RT

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015626_3 3.2|2664738|31|NZ_CP015626|PILER-CR 2664738-2664768 31 NC_013373 Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence 26796-26826 2 0.935
NZ_CP015626_3 3.7|2664735|34|NZ_CP015626|CRT 2664735-2664768 34 NC_013373 Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence 26794-26827 2 0.941
NZ_CP015626_3 3.4|2664730|39|NZ_CP015626|CRISPRCasFinder 2664730-2664768 39 NC_013373 Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence 26794-26832 6 0.846
NZ_CP015626_3 3.8|2664804|36|NZ_CP015626|CRT 2664804-2664839 36 NZ_CP043848 Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence 50879-50914 6 0.833
NZ_CP015626_4 4.2|2673703|41|NZ_CP015626|CRISPRCasFinder 2673703-2673743 41 MF417907 Uncultured Caudovirales phage clone 7F_7, partial genome 31442-31482 6 0.854
NZ_CP015626_4 4.2|2673703|41|NZ_CP015626|CRISPRCasFinder 2673703-2673743 41 KY653129 Staphylococcus phage IME1365_01, complete genome 11951-11991 6 0.854
NZ_CP015626_4 4.5|2673702|42|NZ_CP015626|CRT 2673702-2673743 42 KY653129 Staphylococcus phage IME1365_01, complete genome 11951-11992 7 0.833
NZ_CP015626_4 4.5|2673702|42|NZ_CP015626|CRT 2673702-2673743 42 MF417907 Uncultured Caudovirales phage clone 7F_7, partial genome 31441-31482 7 0.833
NZ_CP015626_3 3.5|2664799|41|NZ_CP015626|CRISPRCasFinder 2664799-2664839 41 NZ_CP043848 Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence 50879-50919 9 0.78

1. spacer 3.2|2664738|31|NZ_CP015626|PILER-CR matches to NC_013373 (Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence) position: , mismatch: 2, identity: 0.935

tcatctttcatgtcactgattaattcatttg	CRISPR spacer
tcatctttcatatcattgattaattcatttg	Protospacer
***********.***.***************

2. spacer 3.7|2664735|34|NZ_CP015626|CRT matches to NC_013373 (Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence) position: , mismatch: 2, identity: 0.941

ctcatctttcatgtcactgattaattcatttgta	CRISPR spacer
ctcatctttcatatcattgattaattcatttgta	Protospacer
************.***.*****************

3. spacer 3.4|2664730|39|NZ_CP015626|CRISPRCasFinder matches to NC_013373 (Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence) position: , mismatch: 6, identity: 0.846

gagaactcatctttcatgtcactgattaattcatttgta	CRISPR spacer
tcgttctcatctttcatatcattgattaattcatttgta	Protospacer
  *  ************.***.*****************

4. spacer 3.8|2664804|36|NZ_CP015626|CRT matches to NZ_CP043848 (Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.833

cggtaatagttgctcaataggtaataaaacgtcggt	CRISPR spacer
cgggaatagttgctcgataggtaataaaacgtttac	Protospacer
*** ***********.****************. ..

5. spacer 4.2|2673703|41|NZ_CP015626|CRISPRCasFinder matches to MF417907 (Uncultured Caudovirales phage clone 7F_7, partial genome) position: , mismatch: 6, identity: 0.854

aactgatatactcctttaccatgtattaattctggaccact	CRISPR spacer
tattcatatactcccttgccatgtattaattctggaccacg	Protospacer
 *.* *********.**.********************** 

6. spacer 4.2|2673703|41|NZ_CP015626|CRISPRCasFinder matches to KY653129 (Staphylococcus phage IME1365_01, complete genome) position: , mismatch: 6, identity: 0.854

aactgatatactcctttaccatgtattaattctggaccact	CRISPR spacer
tattcataaactcctttgccatgtattaattctggaccacg	Protospacer
 *.* *** ********.********************** 

7. spacer 4.5|2673702|42|NZ_CP015626|CRT matches to KY653129 (Staphylococcus phage IME1365_01, complete genome) position: , mismatch: 7, identity: 0.833

gaactgatatactcctttaccatgtattaattctggaccact	CRISPR spacer
atattcataaactcctttgccatgtattaattctggaccacg	Protospacer
. *.* *** ********.********************** 

8. spacer 4.5|2673702|42|NZ_CP015626|CRT matches to MF417907 (Uncultured Caudovirales phage clone 7F_7, partial genome) position: , mismatch: 7, identity: 0.833

gaactgatatactcctttaccatgtattaattctggaccact	CRISPR spacer
atattcatatactcccttgccatgtattaattctggaccacg	Protospacer
. *.* *********.**.********************** 

9. spacer 3.5|2664799|41|NZ_CP015626|CRISPRCasFinder matches to NZ_CP043848 (Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.78

gagaacggtaatagttgctcaataggtaataaaacgtcggt	CRISPR spacer
aactacgggaatagttgctcgataggtaataaaacgtttac	Protospacer
.*  **** ***********.****************. ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 340172 : 360851 21 Streptococcus_phage(94.44%) integrase attL 342090:342109|attR 365742:365761
DBSCAN-SWA_2 922718 : 932898 12 Staphylococcus_phage(55.56%) head,integrase attL 913959:913975|attR 932618:932634
DBSCAN-SWA_3 941494 : 962892 24 Staphylococcus_phage(95.0%) NA NA
DBSCAN-SWA_4 966966 : 974758 6 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_5 1094384 : 1110498 12 uncultured_Mediterranean_phage(40.0%) tRNA NA
DBSCAN-SWA_6 1594292 : 1598672 8 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_7 1602973 : 1636454 57 Staphylococcus_phage(89.09%) head,protease,terminase,tail,integrase,portal,capsid attL 1594837:1594864|attR 1640448:1640475
DBSCAN-SWA_8 1723240 : 1731660 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_9 1823961 : 1832667 12 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_10 2011714 : 2035512 25 Staphylococcus_phage(80.95%) head,holin,tail,terminase,portal,plate NA
DBSCAN-SWA_11 2038653 : 2054983 21 Staphylococcus_phage(52.94%) NA NA
DBSCAN-SWA_12 2121940 : 2132762 13 Streptococcus_phage(14.29%) NA NA
DBSCAN-SWA_13 2259622 : 2277143 19 Streptococcus_phage(100.0%) integrase attL 2254401:2254422|attR 2278373:2278394
DBSCAN-SWA_14 2694861 : 2730516 42 Staphylococcus_phage(85.37%) head,protease,terminase,tail,portal,transposase NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP015626.1|WP_065520771.1|2008945_2009344_-|hypothetical-protein 2008945_2009344_- 132 aa aa 52 NA NA No NA