CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP013574	Rhizobium phaseoli strain N671 chromosome, complete genome	3 crisprs	WYL,cas3,csa3,DEDDh	0	7
NZ_CP013576	Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence	0 crisprs	NA	0	0
NZ_CP013578	Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence	0 crisprs	PD-DExK,WYL	0	0
NZ_CP013577	Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence	0 crisprs	csa3,DEDDh	0	0
NZ_CP013575	Rhizobium phaseoli strain N671 plasmid pRphaN671a, complete sequence	1 crisprs	NA	1	0
NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	0 crisprs	csa3,RT	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013574_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013574_1

1216598-1216707

Orphan

Consensus_repeat	Method
GCGCAGCGGGAGCAATCGATCCAGTGAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013574_1

>merge|NZ_CP013574|1|1216598-1216707|CRISPRCasFinder
GCGCAGCGGGAGCAATCGATCCAGTGAATCGATTGCAGTGGCGAACGCCCGAAGCGCAAGCGCAGGGCCGGGGCGGGTCCGGCGCAGCGGGCGCAATCGATCCAGTGAAT

>NZ_CP013574|1|1|1216598-1216707|CRISPRCasFinder
GCGCAGCGGGAGCAATCGATCCAGTGAAT	CGATTGCAGTGGCGAACGCCCGAAGCGCAAGCGCAGGGCCGGGGCGGGTCCG
GCGCAGCGGGCGCAATCGATCCAGTGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013574.1\|WP_012483129.1\|1221503_1222694_+\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NZ_CP013574.1\|WP_064832451.1\|1225078_1226353_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340949
NZ_CP013574.1\|WP_012483124.1\|1215698_1216586_+\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237362
NZ_CP013574.1\|WP_010025457.1\|1224499_1225117_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013574.1\|WP_012483130.1\|1222857_1223691_+\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831
NZ_CP013574.1\|WP_029531567.1\|1223700_1224384_-\|glutathione-S-transferase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|182533
NZ_CP013574.1\|WP_012483123.1\|1214407_1215448_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176221
NZ_CP013574.1\|WP_012483127.1\|1218544_1219786_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP013574.1\|WP_064824989.1\|1219857_1221477_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP013574.1\|WP_010025459.1\|1226466_1226808_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_CP013574.1\|WP_064824987.1\|1212645_1213272_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238496
NZ_CP013574.1\|WP_010023896.1\|1206793_1207249_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240044
NZ_CP013574.1\|WP_012483125.1\|1216809_1217364_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013574.1\|WP_010023895.1\|1207380_1207695_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013574.1\|WP_012483122.1\|1213349_1214234_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP013574.1\|WP_064824986.1\|1207707_1209225_-\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237233
NZ_CP013574.1\|WP_012483118.1\|1210434_1211709_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NZ_CP013574.1\|WP_064824988.1\|1217507_1218407_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP013574.1\|WP_012483117.1\|1209576_1210347_-\|trans-aconitate-2-methyltransferase	unknown	unknown	gnl\|CDD\|234970
NZ_CP013574.1\|WP_016734417.1\|1212109_1212574_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|369571

Protein	Function_ID	Function_description	E-value
NZ_CP013574.1\|WP_012483129.1\|1221503_1222694_+\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	1.04816e-41
NZ_CP013574.1\|WP_064832451.1\|1225078_1226353_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|340949	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli multidrug resistance protein MdtG, Streptococcus pneumoniae multidrug resistance efflux pump PmrA, and similar multidrug resistance (MDR) transporters from bacteria. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtG confers resistance to fosfomycin and deoxycholate. PmrA serves as an efflux pump for various substrates and is associated with fluoroquinolone resistance. MdtG-like MDR transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.10087e-146
NZ_CP013574.1\|WP_010025457.1\|1224499_1225117_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.75872e-07
NZ_CP013574.1\|WP_012483130.1\|1222857_1223691_+\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	2.68256e-162
NZ_CP013574.1\|WP_029531567.1\|1223700_1224384_-\|glutathione-S-transferase-N-terminal-domain-containing-protein	gnl\|CDD\|182533	PRK10542, PRK10542, glutathionine S-transferase; Provisional.	3.03963e-68
NZ_CP013574.1\|WP_012483123.1\|1214407_1215448_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176221	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP013574.1\|WP_012483117.1\|1209576_1210347_-\|trans-aconitate-2-methyltransferase	gnl\|CDD\|234970	PRK01683, PRK01683, trans-aconitate 2-methyltransferase; Provisional.	5.33668e-174
NZ_CP013574.1\|WP_064824989.1\|1219857_1221477_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.38954e-105
NZ_CP013574.1\|WP_010025459.1\|1226466_1226808_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.7741e-07
NZ_CP013574.1\|WP_064824987.1\|1212645_1213272_-\|cysteine-hydrolase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	1.8386e-53
NZ_CP013574.1\|WP_010023896.1\|1206793_1207249_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240044	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	6.70671e-27
NZ_CP013574.1\|WP_012483124.1\|1215698_1216586_+\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237362	PRK13356, PRK13356, branched-chain amino acid aminotransferase.	0
NZ_CP013574.1\|WP_012483122.1\|1213349_1214234_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	9.47799e-30
NZ_CP013574.1\|WP_064824986.1\|1207707_1209225_-\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|237233	PRK12853, PRK12853, glucose-6-phosphate dehydrogenase.	0
NZ_CP013574.1\|WP_012483118.1\|1210434_1211709_-\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.2764e-129
NZ_CP013574.1\|WP_016734417.1\|1212109_1212574_-\|cupin-domain-containing-protein	gnl\|CDD\|369571	pfam07883, Cupin_2, Cupin domain. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel).	3.98265e-11
NZ_CP013574.1\|WP_012483127.1\|1218544_1219786_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	1.89871e-104
NZ_CP013574.1\|WP_064824988.1\|1217507_1218407_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.97356e-76

>NZ_CP013574.1|WP_012483124.1|1215698_1216586_+|branched-chain-amino-acid-aminotransferase
MAVDTSPRSTTWTHVDGEWLPGNPPLIGPTSHAMWLGSTVFDGARWFDGIAPDLDLHCQRVNRSALAMGLKPVKSAEEIAALAWEGVGRFDGATAIYIKPMYWGEHGSAGSIVSVDAESTRFALCLFEAPMGGHAGTSLTVSPYRRPSPETAMTEAKTGSLYPNSGRMIAEARSRGFDNALVRDLNGNVVETASSNVFLVRDGVVMTPAANRTFLAGITRARVIGLLRKAGFDVGEAALSVEDFLAADEIFTTGNYSKVVGVTRLDDRNLQEGPVTRKALELYMNWAHGRTESEE
>NZ_CP013574.1|WP_012483123.1|1214407_1215448_-|zinc-dependent-alcohol-dehydrogenase-family-protein
MKAMYYEAFEQAPEIRTLPDPTPTEDGVVISVGASGLCRSDWHGWMGHDPDIRLPHVPGHELAGRVVATGRGVMRFKVGDRVTVPFVSGCGHCSECHSGNQQVCPNQFQPGFTHWGSFSEYVAIDYADTNLVHLPDTIDDATAASLGCRFATSFRAVADHARTGPGEWIAVHGCGGVGLSAIMIATALGANAIGIDISEEKLAFARECGAVATVNAASVADVAEAVREITKGGAHVSIDALGHPATCFNSIKNLRRRGRHVQVGLMLGEYATPQIPMAQVISNELEIYGSHGMQAWRYDAMLSMLAAGKIAPQKLIGRRISLEEAVPALMALDKAEGTGISVITQF
>NZ_CP013574.1|WP_012483122.1|1213349_1214234_+|LysR-family-transcriptional-regulator
MAEQKRTGLDWEDLRFFAALARHRSLSATARALKVNHATVARRIAALEQNLGVNLFERRADGYALSRQGSAILAETGAMEAAAAAIRDRLDAEDGPRGRVRLTTIRSLADLVLAPNLAEILDGLPHVELEIITDIKVASLAQREADIALRLGHPGDSELSGRRVATIRYGFFGSKETRNAFEMGDLPPLITYDGESQGVAEARWLDNNFPDHPVSLRSGSNAVQAQAAASGLGLAMLPLYLAATVSGLEPVAFAAPMPERELWMLTPAELAQVPRVRVVLDRLSRLFVRHKHLF
>NZ_CP013574.1|WP_064824987.1|1212645_1213272_-|cysteine-hydrolase
MAPLTLLQHAGVTPKPIDLAKSVLVIIDAQNEYLDGKLPLPGIGPAIVEIGRLLDAARENGVPVFHVVHHAPPTGSLFAAGSQAAEIIPALAPVDGERVIAKTLPNAFAGTTLAAALTDLAEGSGRTDIILVGFMTHMCVSATARAALDLGIRAIVVASAAATRALPDPLGGVISADLVHRTALAELADRFATVVPDAGSVVKDGVKV
>NZ_CP013574.1|WP_016734417.1|1212109_1212574_-|cupin-domain-containing-protein
MMSNSFVTMPAGKEAKRFFVLGDRIERQVRIRGTWLNIFDVTVPPGSRTPKHAHASPEVFRILEGGLTIWRLTDNGPEEIEASAGDIVTIAPFMVHCYANRGDVPAVFSAIVDRDMAEFIEAEGTSEPLKAPSPETIARMTAAANAYGITILAA
>NZ_CP013574.1|WP_012483118.1|1210434_1211709_-|HlyC/CorC-family-transporter
MFLEIGIVALLTILNGVLAMSELAVVSSRTARLKVLSDNGSKGAAQAIKLAENPGRFLSTVQIGITLVGVLSGAFSGATLGGRLTAWLETQGMSSAVADAVGVGSVVVAITYLSLIVGELVPKQIALREPEAVAARVAPAMAVLSKIALPLVWLLNASGNLVLKLLGQSGKGGDNVSDEEIKTVLAEAQSAGVIESEESAMISGVMRLADRTARALMTPRRDVEIIDIDDSLDEIRAQLHRTKRSRLPVRKGSSDEVIGILPVKDFYDAMSEHGSADIKALTQDIPVVSDLATAINVIEAIRKSPVHMVLVFDEYGHFEGIVSSGDILEAIMGALQEGPVDEQAIARRDDGSYLVSGWTPIDEFAEFLNLKLDDDLEYQTVAGLVLEELKHLPELGESFTRDGWRFEVIDLDGRRVDKILVSAE
>NZ_CP013574.1|WP_012483117.1|1209576_1210347_-|trans-aconitate-2-methyltransferase
MAWSAQQYVKFEDERTRPARDLLAQVPLQSLRRAVDLGCGPGNSTELIIERFGAEGVSGLDSDVNMLEAARKRLPGTAFVEADLGSWQPTEPADLLFANAVFQWLPDHLDIFDRLMDGLSPGGVLAVQMPDNLGEASHLAMEESAHAGPWKAAFEEKSVRRQPLAPPSAYYSRLIGKAARIDIWHTIYNHPMADAADIVEWVKGTGLMPYLAHAGEAYREAFLADYLERIEKAYPKMSDGRVMLRFPRIFMVAVKK
>NZ_CP013574.1|WP_064824986.1|1207707_1209225_-|glucose-6-phosphate-dehydrogenase
MDAAPTPPVTLVIFGATGDLTRRLLVPAIINLTRQRLVGEDLNILGIGIEPGDDEFLRGRLDAFLSHLNGDKQTVKDEAWESLRRRISYTSGDFTKDDIFLEIGRRLGPDANAAFYLAVPPSFFGSIVEKLAAHGLTDEKDGTFRRVAIEKPFGTDLASAKALNAQILAQIDESQTYRLDHFLGKETVQNLMTARFANMIIESLWNSRYIDHVQITAAEIVDVGSRGKFYDATGALRDMVPNHLFQLLAMIAMEPPNSFDAEAIRNEKSKVLKALRIYTPDESKTHGVRGAYTAGPLNGVELPAYRDTKDVSPDSRTETYVALKLYADTWRWAGVPFYLRTGKALTARDTEIVITFQPVPFAQFRETEVSRRLPPNRLVIQVQPDEGMSMEISIKSPGLSVDTTPVSLDFRYADKFDIGKTTGYESLLYDLFIGDQTLFQRADGIEAGWAAVQPFLDIWAKDPSTPEPYAPGSMGPACADRLIERDGRQWHELGVLLHHNGKDAK
>NZ_CP013574.1|WP_010023895.1|1207380_1207695_+|hypothetical-protein
MRRFIAATSIALLSLSAPVLAQSNMGMDASGRIDGTPPLGTAPGVETQSGLVIPLDSIETGSVDNGAPSGRVDWARCPPRKARGALATEGGNSGASTSAACRDR
>NZ_CP013574.1|WP_010023896.1|1206793_1207249_+|NUDIX-domain-containing-protein
MTVWRPPQQIRVKVIGLAWRQDRLLAAEVEDDGGHIKGIRPLGGSIEFGETREQALQREFREELETAIRIVGPWHLLENIFEHHGATGHEYIFAADVELADASLYARDEIRYSELDETAATARWFGRDIVRDAGIDLYPTGLEKLLSRWRD
>NZ_CP013574.1|WP_012483125.1|1216809_1217364_-|hypothetical-protein
MVIAAFLGIAYAAYDRALDFWPLGFGNGLRGLFDLLGGLLLALLIVGILLVWFVSAIAAQYDRRFRGMASSFIAIIIVPVCFGTIVTVPLFDPWLWYAILNKSSFEAAAATSGSSQNSPKFAIIDARDVSTGIAGVGLNHFVALIYSEGDPYKHVYNDSDEEKLGSNSVLTHLYGNFYRRDEYW
>NZ_CP013574.1|WP_064824988.1|1217507_1218407_-|LysR-family-transcriptional-regulator
MDRLTSLAVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEERLGVRLLNRTTRKVSLTETGKYYYERSSQILAELDEADRTASALSTTPRGTLKVYTSGSIVRFLLPVFSEYMELYPSISVDFSVGERMVDMIEDGYDLVIRTLPPDSSLIARKLTPWRHMLVCSPAYVDSHPLPLKPAEIADHNCLQYAYYPYGDEWRFEDGDGRQESVKVSGNVVSNNAEMLRFLTMNGRGLFLAPSFVVFDDIAEGRLIRIMPDYRPVEFTINAVYPNRSHLPTKVRLFIDLLAERFAEHRKWMT
>NZ_CP013574.1|WP_012483127.1|1218544_1219786_+|HlyD-family-secretion-protein
MVELPRKQFFESAGEAERILAEEAARAPAAEAPATPMTGTPVAQAPEKTGRRMLKRAVIAAALLAGAAFAGDFGYRYWTVGRFIESTDDAYVKADYTTVAPKVAGYIKQVLVNDNDVVKSGQVLARIDDRDFQAALSQARADVKAAEAAITNIDAQIALQQSVIQQAKATVDASQASLDFAVSDAARSARLITNGAGTQSRAEQTQSARDQAAAAVERDRAALVAAENKVPVLRTEREQAAAQRDRAAAAAHQAELNLSYTDIVAAVDGTVGARSIRVGQYVTSGTQLMAVVPLHAVYVVANFKETQLTYVRPGQSVEIKVDSFPDIAIKGHVDSVSPASGLEFSLLPPDNATGNFTKIVQRIPVKIVIDDGALSGLLRSGMSVEPEVDTKAAQSEASQASGETEEEFSSHAG
>NZ_CP013574.1|WP_064824989.1|1219857_1221477_+|multidrug-efflux-MFS-transporter
MATLQIAANGNSLARPAATAPATPAVTSPLRIWSAVVGSTLGAFMAVLNIQIVNASLADIQGAIGAGTDDGGWISTSYLIAEIVVIPLSGWLARVFSLRNYLLANAILFLIFSVACAFAANLQQMIILRAIQGFAGGVLIPMAFTIIITLLPKAKQPIGLALFALSATFAPAIGPTIGGYLTENWGWEYIFYVNLVPGALMVGLLWASLDRAPMNLKLLAKGDWPGIVTMAIGLAALQTVLEEGNKEDWFGSDFILRLSVISAVSTTLFIVIELRAAHPLLNLRLLLRRNFGFGIVANFLLGIALYGSVFVLPIYLTRIQGYNSEQIGMVLAWTGIPQLLLIPLVPRLMKRFDVRLLIIIGFALFAASNFMNVHMTGDYASDQLFWPNIVRAIGQALVFTPLSAIATAGIEQENAGSASSLFNMMRNLGGAVGIASLQTFLSKREQYHSNILTHSVSVFEEATRDRIARLTAYFMSHGVSDQALASNKAMVAIAFKIRKQANIMAFSDAFFLLGVALVVALLAILLLKKPDQLSGGGAH
>NZ_CP013574.1|WP_012483129.1|1221503_1222694_+|adenylate/guanylate-cyclase-domain-containing-protein
MTTAIYAPAAERQTNAVGTGALLAIIEWLSGDECHALDEAGLVSGLGRRLQALGLPVDRLTLHLMTLHPELVGRTIAWAPGEPVEIHDREHGARVAISNTPLRKVMETREPLVVGPGESVHGRWRHIDVFADRGLMQLVIAPLCNIDGPVGAAVFGTRRPAGFTASERQVIERILPALRNTSELRILRQVELSLLDTYVGPLTASRILAGRIRQGEIESMEAALLLCDLRGFTELSNKLPGGTVLGLLNAYFDRVVPAITREGGEVLKFMGDAVLAFFPGYAAAHACGAALASARAILDEIDRFQYDGIGVKAGIALHYGEVSYGNIGSGRRLDFTLIGRDVNLVSRIQTACSELGEALLMSEPFREKAGAGDVMSVGAQGLKGFAEPVELFTIVR
>NZ_CP013574.1|WP_012483130.1|1222857_1223691_+|ammonia-dependent-NAD(+)-synthetase
MTVLFDEQAEIIRELGVATEIDPEREIQRRTAFLKDYLVGSGMRGYVLGISGGVDSLTAALLAQKAVRELRDGGYAAEFIAVRLPYGVQADEADAVKALATIDPDRSMVVNIKAAADAMLAAAQDGGLAFADAGRQDFILGNIKARQRMIAQFALAGALGGLVIGTDHAAEAVMGFFTKFGDGAADILPLAGLNKRRVRLLAKRLGAPDELIFKVPTADLEDQRPLRPDEEAYGVSYDEIDDFLEGKPVGEIARRRILAAYRATAHKRALPVAVNAL
>NZ_CP013574.1|WP_029531567.1|1223700_1224384_-|glutathione-S-transferase-N-terminal-domain-containing-protein
MKLYMNAAACSLSPHIVCRELGLDIELVEVNRETHRTSDGKDYLAINGNGYVPALMLDDGKVLTEGPAIAQFLADSVPQGAAMLPEVGNLRRNEVQSYLNFISAELHKPMVLLFEPAYAGVHERIRAQVSKRLSWLSGRFAGPYLTGEAFTVADAYLFVCLNWSPWTQIHLKQWPALHGFMARVAARPKVREALRAEDLQAFDVDGVFFAPNAYLASSDWTGSPVQP
>NZ_CP013574.1|WP_010025457.1|1224499_1225117_+|TetR/AcrR-family-transcriptional-regulator
MKDEKKRGRPRAFDAKAALGKARDVFWDRGFAAASLDNLSAATNLNRPSLYGAFGDKEDLYLDTLEAYRRDGMNALAQALDPSLPLRDNLARVYESALAIYLHGATAARGCLLIGTATAEAVERERVREVLGRSLSDFDGEIEKRMRLAVERGELPESADPQMLARLASAVMHSLAVRARAGDSRETLEAIARSGVELICGSARS
>NZ_CP013574.1|WP_064832451.1|1225078_1226353_-|multidrug-efflux-MFS-transporter
MPDTQLDAVSVKAGSIHWKRNLTVALIGSFTTIVAMTLLLPFLPLYVEELGVADHAAIVQWSGIAYGATFLAAALVAPLWGRLGDIYGRKLMLVRASLGMTVAISLMGMAGNVWQLMALRLFVGLAGGYSSGSMVLVATQTPKERSAWALGVLSCGIMAGNLVGPLIGGVLPPVIGIRGTFLAAGAMIFLAFLATALLIKEEKSPARKQAAKASGGWISIPDKGPVVAMLATGALLMFANMSIEPIITVYVAQIVPDATEVTKISGLVMSAAALGSILSASRLGRLADRIGHWPVISGALAVAGLLLIPQAFVTSSWQLIVLRFLMGAALGGLLPCIAAVIRHSVPDSAAGSILGLSVSSQYVGQVAGPILGGFVGGHVGMRAVFLGTAVLLLAGGAYAWIVRPKTTETGAGSASRAAADQFDA
>NZ_CP013574.1|WP_010025459.1|1226466_1226808_+|nuclear-transport-factor-2-family-protein
MNDMRTRQQTVRDLYAAYLDDRKDIVGAMLTEDFTFSSPRDDHIDRAEYFERCWPKQPLFRRIDIEFLAIDGNEAAVRYRAEKLDGASFGNMESLRFRGGKIASVEVYFGRDL

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Crispr_ID: NZ_CP013574_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013574_2

1467145-1467238

Orphan

Consensus_repeat	Method
CAAGCTTGCTTGTCCGCCCGCGGCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013574_2

>merge|NZ_CP013574|2|1467145-1467238|CRISPRCasFinder
CAAGCTTGCTTGTCCGCCCGCGGCAAGGTCACTTGTCCGCCCGCGGCAAGCTCACTTGTCCGCCCGGCAAGCTTGCTTGTCCGCCCACGGCAAG

>NZ_CP013574|2|2|1467145-1467238|CRISPRCasFinder
CAAGCTTGCTTGTCCGCCCGCGGCAAG	GTCACTTGTCCGCCCGCGGCAAGCTCACTTGTCCGCCCGG
CAAGCTTGCTTGTCCGCCCACGGCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013574.1\|WP_064825831.1\|1472433_1472895_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP013574.1\|WP_004671846.1\|1473390_1473981_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP013574.1\|WP_016734230.1\|1470375_1470879_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013574.1\|WP_004680549.1\|1469869_1470292_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP013574.1\|WP_010025476.1\|1469098_1469788_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|198311
NZ_CP013574.1\|WP_064825047.1\|1458857_1460216_-\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
NZ_CP013574.1\|WP_064825048.1\|1460225_1461011_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP013574.1\|WP_041683589.1\|1467262_1468312_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP013574.1\|WP_064825052.1\|1471486_1472383_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223633
NZ_CP013574.1\|WP_064825050.1\|1461803_1462550_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP013574.1\|WP_064821750.1\|1463512_1464097_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013574.1\|WP_064825049.1\|1461015_1461807_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP013574.1\|WP_064821749.1\|1462574_1463405_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270411
NZ_CP013574.1\|WP_064825054.1\|1473139_1473394_-\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|273753
NZ_CP013574.1\|WP_064825829.1\|1457538_1458843_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274819
NZ_CP013574.1\|WP_064825046.1\|1455394_1457437_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224422
NZ_CP013574.1\|WP_041683588.1\|1464233_1465079_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NZ_CP013574.1\|WP_064825051.1\|1470875_1471421_-\|CGNR-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|227803
NZ_CP013574.1\|WP_064821752.1\|1468451_1468961_-\|damage-inducible-protein-DinB	unknown	unknown	gnl\|CDD\|225200
NZ_CP013574.1\|WP_064825830.1\|1465207_1467091_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562

Protein	Function_ID	Function_description	E-value
NZ_CP013574.1\|WP_064825831.1\|1472433_1472895_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	3.29209e-53
NZ_CP013574.1\|WP_004671846.1\|1473390_1473981_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.69731e-40
NZ_CP013574.1\|WP_004680549.1\|1469869_1470292_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	1.5797e-87
NZ_CP013574.1\|WP_010025476.1\|1469098_1469788_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|198311	cd03202, GST_C_etherase_LigE, C-terminal, alpha helical domain of Beta etherase LigE. Glutathione S-transferase (GST) C-terminal domain family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.	1.29749e-61
NZ_CP013574.1\|WP_064825047.1\|1458857_1460216_-\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	2.03228e-78
NZ_CP013574.1\|WP_064825048.1\|1460225_1461011_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.03821e-136
NZ_CP013574.1\|WP_041683589.1\|1467262_1468312_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.04729e-34
NZ_CP013574.1\|WP_064825052.1\|1471486_1472383_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|223633	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].	5.27638e-46
NZ_CP013574.1\|WP_064825050.1\|1461803_1462550_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.14684e-46
NZ_CP013574.1\|WP_064821750.1\|1463512_1464097_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.48265e-11
NZ_CP013574.1\|WP_064825049.1\|1461015_1461807_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.14863e-58
NZ_CP013574.1\|WP_064821749.1\|1462574_1463405_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270411	cd13693, PBP2_polar_AA, Substrate binding domain of polar amino-acid uptake ABC transporter; the type 2 periplasmic binding protein fold. This group includes the periplamic-binding protein component of putative polar amino acid ABC transporter. The polar amino-acid binding domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.40222e-115
NZ_CP013574.1\|WP_064825054.1\|1473139_1473394_-\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|273753	TIGR01682, Molybdopterin_synthase_sulfur_carrier_subunit, molybdopterin converting factor, subunit 1, non-archaeal. This model describes MoaD. It excludes archaeal homologs, since many Archaea have two MoaD-like proteins, suggesting two different functions. pfam02597 describes both the thiamine biosynthesis protein ThiS and this protein, MoaD, a subunit (together with MoaE, pfam02391) of the molybdopterin converting factor. Both ThiS and MoaD are involved in sulfur transfer reactions. Distribution of this family appears limited to species that also have a member of pfam02391, but a number of Archaea have two different members, suggesting functionally distinct subtypes. The C-terminal Gly-Gly of this model is critical to function. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	3.70021e-24
NZ_CP013574.1\|WP_064825829.1\|1457538_1458843_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP013574.1\|WP_064825046.1\|1455394_1457437_-\|S9-family-peptidase	gnl\|CDD\|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	3.36156e-149
NZ_CP013574.1\|WP_041683588.1\|1464233_1465079_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	1.7726e-58
NZ_CP013574.1\|WP_064825051.1\|1470875_1471421_-\|CGNR-zinc-finger-domain-containing-protein	gnl\|CDD\|227803	COG5516, COG5516, Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding [General function prediction only].	1.8044e-45
NZ_CP013574.1\|WP_064821752.1\|1468451_1468961_-\|damage-inducible-protein-DinB	gnl\|CDD\|225200	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown].	6.41784e-50
NZ_CP013574.1\|WP_064825830.1\|1465207_1467091_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0

>NZ_CP013574.1|WP_064825830.1|1465207_1467091_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MITLTEISARIAGRLLLDNASLSLPSGTKAGLVGRNGAGKSTLFRVITGDLGSETGSVSIPKAARIGQVAQEAPGTEQPLIEIVLAADKERAALLAEAETASDPHRIAEIQMRLVDIDAHSAEARAASILAGLGFDREAQARPASSFSGGWRMRVALAAVLFAEPDLLLLDEPTNYLDLEGTMWLEDYIRRYPHTVVIISHDRDLLNNAVNSIVHLDQKKLTFYRGNYDQFERQKAEADELQTKAKAKNEAARKHLQSFIDRFKAKASKARQAQSRVKALERMGTVAAVIEDHVQPITFPEPEKQPASPIVAVQGGAVGYQPGKPILKNLNLRIDNDDRIALLGSNGNGKSTFAKFISGRLAPESGEVKLAPSLKIGFFAQHQLDDLIPEQSAVEHVRRLMPGDPEAKVRARVAQMGLATEKMATAAKDLSGGEKARLLMGLAAFHAPNLLILDEPTNHLDIDSRRALIEALNDYDGAVILISHDRHLIEATVDRLWLVNGGTVTAFEGDMDEYRDLIVASGKKKEEKPQPADDATSKADQRKLNAEKRASLTPLKKKINEIESLTAKLEKQIQALDAELADPALYEKAPAKAAEKAKQRGEAAAKLAAAEEDWLMLSSQYEEAMAG
>NZ_CP013574.1|WP_041683588.1|1464233_1465079_-|polysaccharide-deacetylase-family-protein
MHRFLLLACIALTATLSACGTTKHAPDASIKTSSVIAPEGRKLAYAGDDAAAPRMSGWHHLAGRTLEVSSLADLKLQNKEVILSFDDGPIPGRTDKVLAILDQFGVKGAFMMVGEMAEMHPALARKVAEDGNTIGSHTYDHTDLTSLDFDAAMAEVVKGELAVTKATGTDVSFFRFPYLAESHRLRTAIAMRDMVVMDVDIDSKDYFAITPASVTQRTMDLLHRRGHGIILMHDIHKRTATMLPTLLSELEGEGYKVVTLKFKKTQAPNNLVALADFVTTR
>NZ_CP013574.1|WP_064821750.1|1463512_1464097_-|TetR/AcrR-family-transcriptional-regulator
MPFKTAQLSTRGRIIDAISDLFYRRGTYLVGIDEIVRELKIARATLYRHFDGKEGLIVTYLSHRHALVSDQLEKLVAGKSGAPAIFAIFDSLADKTRSENFRGCAFLIAVTENPGSAAIQDVARTHKVFLRALFGRLVPPGPAHDEISEQMLVVYEGVLAASVLRPEARPAEIARKAVAALLQAGDFDASGDEA
>NZ_CP013574.1|WP_064821749.1|1462574_1463405_-|transporter-substrate-binding-domain-containing-protein
MSHKILPKALFAMSISLLAATQAFADATLDRIKARGALTVGVILSGAPFGYIDPTSQTQKGYNLDIAKALADDLGVKLETVTVTPPNRVQFLQQGKVDILIANMQYTEDRAKVLDWVPTPYDRSGGAAVGRKDSGLKDWADLKGKPVCVSQGSNYTQPLIEQYGAEVKGLPSQPESLLALQGGNCVVAVHVGATLGLLLQDRPEDWKDYAILFPTELIPSDSVIWVRKGEKETAEALDKTIRQLHTSGKLLEFAKANRLSNTEYLEQERKTLSASK
>NZ_CP013574.1|WP_064825050.1|1461803_1462550_-|amino-acid-ABC-transporter-permease
MWDSGITSLFVDLTNRLGLNYEFLATGYEAEIWRDGFITTLYLIALLIPVSLIAGLLFAACLTSGRLWLSAPVRVFVEITRNTPTLVQLMFSFLVLNTFVSNLVGGAQNNPLTPFFWVVAVVGLHIAALHAEAIRAGIEAVPASTVEAARGIGFSKLQILRYVEIPLAFRASLPAIVNNLINLVKLTTVGNAIAVSEITYASIMVWTQRDNVVSLMIVILLFFSLINLVVARVGLWAERKLAVPGYGL
>NZ_CP013574.1|WP_064825049.1|1461015_1461807_-|amino-acid-ABC-transporter-permease
MTTVALSEPRKSGHLLRNIGFAALPALILLWSLADLTLGRELVEWLPYLASGFLMNVVISLSAMTLGTVVGTVFGILQLVPYRPVRYPVVAYVQAFRNAPHLVLIFATTYIFPFEIVVFGNYLPFPDWLKAVIGLAIPASAYVAEITRGAILSIPTTQWEAAKGLGFSRSQALRWIILPQCLRRSLPPWMNILASITMGTSLASLVGVHELLHAATDASTAVRRLDFTIIAYIVVMAAFFTLCYPIARLTRRLERRFNAGSRI
>NZ_CP013574.1|WP_064825048.1|1460225_1461011_-|amino-acid-ABC-transporter-ATP-binding-protein
MNMKTDDAIVRLEDVHLSFGQTEVLRGIDLTVNRGNAVSIIGPSGSGKSTILRCINALVTPQRGRITVGGTRVDQLATESERIALRKRVGIVFQQYNLFPHLTVLDNIVLAPTRILGVARGEAEKLARELLEKVRLSEKASAYPGQLSGGQQQRVAIARALAMKPELVLFDEVTSALDPETVGEVLWVIRDLIRDGMTSILVTHEMRFAEEISDTVVFTENGRIVDDGSPEEIFHAFDNPRIRQFVGGLAGGRGMERGEGI
>NZ_CP013574.1|WP_064825047.1|1458857_1460216_-|MmgE/PrpD-family-protein
MTRTFAPLTSAFAEAIIASDPLKDVAAMDAARLAIIDFLACAIAGARDRTTGLLADAVGADLPGEAILIGSARRTDPLAASVVNGYAGHVLDYDDVHASVRGHPTTVIVPALLALAAERAFSAEALVASYIVGLEAMARLGLSLGSKHYEKGFHATATLGTVGAAAAIAHLKRASAEETAVALGLAATQSSGLRLQFGKDAKPFHAGMAARSGLLSARLAAAGFGGASDFLDNSVGFHSVFAFGAERLSALTENWGSPWQIVAPGLTLKAYPCCTASHPVASLGIDLNREGLRAEAIARITFTYPSGADAALVVREPSNGIEARFSPEYVFAAALMDGALRLDHFDGQPVAPRLMALAKRAGRRHDQAAPRMSSDPQTRFVIVDIALADGSTIQRRFDGLPGLTNPTEKFRDATGRHPAFADIPSLVRTMHSAADLRKLLALLNQDAAQNLV
>NZ_CP013574.1|WP_064825829.1|1457538_1458843_-|LLM-class-flavin-dependent-oxidoreductase
MTRKREIHLGLFLQGAGHHVSGWRHPHAESGSENFNLLKRVSEIAEAAKFDMVFLADGLTSGVDAHPSTIARFEPLTLLSALAVVTDKIGLAATASTTYGEPYHTARAFASIDHLSHGRAAWNIVTTSYARTANNFSKAHPEHDERYAVAEEFVDVVRGLWDSWDDDAFVKDKQSGVYADPAKLRILDHKGKYFSVKGPLNIPRPPQGHPILIQAGSSGPGQDLAARTADVVFTAQQSLEEAQAFYRSLKERVARFGRQPDDVAVMPGFLPVIGRTTKEAADKLAELDRWTDIKSAMPLLEERIGHSLAEYDLDGPLPDLPISDQLRSRAELLTALARRETLTIRQLALRVAAGRGHHIVLGTPVKIADRMQQWFDSRAADGFNVMPPFFPGGLEDFTQLVVPILQERGLFRREYGGSTLREHLGLTRPAPISP
>NZ_CP013574.1|WP_064825046.1|1455394_1457437_-|S9-family-peptidase
MNLHLEADEDPRTRQFIDEHNRASDAALRTPEFTEDRDAIKALIERQDRLIVPMRRGGWLFDFRQSKDNPLGVWLRLPADQQPLPEADWEVVFDLDAFCLGEGKRWSWRGVVTCPWEPTRVLLTLSDGGSDLVRLLEFDAESKQIVTGGFDTPAARSHANWLSRDEICYFGSIDRFSATRSGWPRVGRRLKRGQRPEDAAILFEAADEDVYGFDLVIDPDLSGSSANTGLIDIFVAAHEIGVASAYLISDDGRQRRIDLPKEADFQFNRDHCLWRAKTDERVATGSLVLQRFDPRSETMPLGPQRILFQPGEGQSVSQMMLMREWCVFIVSDRLRPRLMVLDLTKPDAEQREIALPADMQTASFRPLYADLHLGDDTLYIVGQGFLQPPTCYRLELSDRSRQPEPVFTAAAPSYFDATGMSSELLEAISEDGTRVAYRLVLPRHWTKGALPVLIYGYGGFDVALSPNYSGVTGRWLEQGGAYVQAYIRGGGEFGPDWYRSAKRQGRDRAFADFVAIARDLVARGYTVPARIACQGGSNGGLLTGVMLTRYPQDFGAVWCQVPVLDMTRFHLFSAGQAWMNEYGDPEVPADRDFMLGYSPLHNVRPASEIAYPPIYIESSTNDDRVHPSHARRFAALLEEEGHKPLFHEFGLGGHGGDGDSQERAARAAMGYSFLRQTIMR
>NZ_CP013574.1|WP_041683589.1|1467262_1468312_-|GGDEF-domain-containing-protein
MQNASANALVPREAGRPGPIADIQKIAQHMARLNVAGLPRNYELFHEAIVGRNGGLAQDIAALGPQPQQAMLDELGLKYRLVSHCGLAGDTSRNEASRLLREVAEKLAEGLRHRDAFARACDTILKSVSGHEDQSLAAFIGELDYLSVSLTSVLSAEMEIGARLADDIKRLETLERGISAMQLAAVADRITGLPNRIALNRVMADLYEREEGAAGSALFMIDIDNFTDLNERYGTPAGNKLLKKLAGLFQKSIKKNDFIARTEADEFALLFANVGMQDAKAIAERLRASVEDNLVFATSDKGDSGRLTISVGVALSADASTPGQLQANARVALLAAQSNPRQPVQAFGR
>NZ_CP013574.1|WP_064821752.1|1468451_1468961_-|damage-inducible-protein-DinB
MLRQYRMFAAYNRWANAQLYAAAAALSDAEFRSDRGAFFGSLHRTLNHLMVADRIWMKRFTGIGEAPTTLDAVLFEEFDALAAARRTEDERIIAWTGTLDEATLAGNFTYMPVTQQIAMTQPLWTALSHLFNHQTHHRGQCHMTLTALGKPSLGLDLIYFLRSEGREWM
>NZ_CP013574.1|WP_010025476.1|1469098_1469788_+|glutathione-S-transferase-family-protein
MTRALYSLCGADERRFFSPHCWKAVMALAHKGLDFEEIPTTYARIREIGGGVSPTLPVLDDNGRLIPDSFAIALYLEEAYPERPSLFGGEGGKALSRLVEGYSQMIIHPAITRIALLDIHAILDEGDKAYFRESREARLGKSFEVIAADSEAEKAAFGAKLEPIRHMLKFQPFIGGQTPLFADYIVFGALQWLRVCTGFSMLAADDPVLAWFERCLDLHESRGRTVTAA
>NZ_CP013574.1|WP_004680549.1|1469869_1470292_+|nucleoside-diphosphate-kinase
MAIERTFSMIKPDATKRNLTGAITKMLEDAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEGMTSGPTVVQVLEGEGAILKNREIMGATNPANADEGTIRKVHALSIGENSVHGSDAPETAAQEIKYWFSDTEIVG
>NZ_CP013574.1|WP_016734230.1|1470375_1470879_-|hypothetical-protein
MRKHLIVTAAAIGLLLSACQRQAENLVEVTGHLFVFNYRVASATYLLTLKKTGPIPDGSVIIAEFENPQGGAPLVLNQKIYPIDDKIALQSQNLHCVRKDRPYSVSIRLVDKDGKLLQELKTQFRSDLDQTVLPSKPLVIGALYDKNPEVFKPDGSVDFSNTDKCPG
>NZ_CP013574.1|WP_064825051.1|1470875_1471421_-|CGNR-zinc-finger-domain-containing-protein
MSFSWTPHRFAGGALALDVANSVVLRHDAARRIDRFAAGDQMRSFPRAAAEFCAERALFGDIAPVPAENTADFIALREAIDRYFRKRILDGSDDRLLAGLLDALATVLHEANPASLATATAHSVLRLIAMPDPERMKICGNCGWLFIDRSKNRSRAWCDMAVCGNRAKANRHYRRKKEEIP
>NZ_CP013574.1|WP_064825052.1|1471486_1472383_+|branched-chain-amino-acid-ABC-transporter-permease
MAYLLQQLANAVPLAALYAALAFGYAVAFGVTKRADITYGAIFAFSGQILLLFTELAFNRFWLVLPAALAVGAGAAIVYSLAAGIWIGRSIMLPLVSKSPNTVIVAALGIMIVLMETARLAADTRAIWLPPFLNDTVVFWSDGPFKVTLTYIQLIDTALMSAIVVIGTLILRRTAWGRIWRAVTDDPLAAELCGTSASRVFLVAYAAAALVATICGILATFYYGSMDFGAGLMFGLKVLLIAAVGGYSDPLRSAGGAAGLAVVETLWGAYGPFVWRDLVIFSLLVLLLVMSRRERVVL
>NZ_CP013574.1|WP_064825831.1|1472433_1472895_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MTITPTIRVQHEDFDLQAEVDLLSNGKPSIGAVVTFSGLCRDDGGALVALELEHYPGMAEAEITRIGELAIARFGLLGLTTIHRYGKIAVGENIVLVVAAAPHRQAAFDGANFVMDFLKTAAPFWKKEHDKDGAAGDWVAAKDADDAARDKWK
>NZ_CP013574.1|WP_064825054.1|1473139_1473394_-|molybdopterin-converting-factor-subunit-1
MTRLVYFAWVRERIGKGEEEIDLPSSVLTVADLLNHLKTLGEEYEAALQYPDVIRVALDMEHVEHDEPISGAREIGIFPPMTGG
>NZ_CP013574.1|WP_004671846.1|1473390_1473981_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MASRAYSIPNLLTYGRILAVPVIVLCFFIEGRLSISNTARWVALWIFIIASITDFLDGYLARIWNQTSNIGRMLDPIADKLLVASILLLVAADQTIAGWSIWAAITILCREILVSGLREYLAALKVSVPVTRIAKWKTTLQLVAIAFLLAGPAGDEIFPYTTQTGIALLWIAALLTIYTGYDYFRAGLKHIVDDEE

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Crispr_ID: NZ_CP013574_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013574_3

1926578-1926666

Orphan

Consensus_repeat	Method
GCCGCTCCGAAGAAGAAGGCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013574_3

>merge|NZ_CP013574|3|1926578-1926666|CRISPRCasFinder
GCCGCTCCGAAGAAGAAGGCTGCCGCCAAGACCGAAGCCGCCGAGGCTGGCGAAGGCGAGGAAGCCGCCGCTCCGAAGAAGAAGGCTGC

>NZ_CP013574|3|3|1926578-1926666|CRISPRCasFinder
GCCGCTCCGAAGAAGAAGGCTGC	CGCCAAGACCGAAGCCGCCGAGGCTGGCGAAGGCGAGGAAGCC
GCCGCTCCGAAGAAGAAGGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013574.1\|WP_004678838.1\|1922040_1922187_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP013574.1\|WP_010020842.1\|1933118_1933943_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP013574.1\|WP_064825181.1\|1919591_1920059_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013574.1\|WP_004673833.1\|1926857_1927280_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|226158
NZ_CP013574.1\|WP_064825179.1\|1915729_1918270_+\|protein-translocase-subunit-SecDF	unknown	unknown	gnl\|CDD\|237805
NZ_CP013574.1\|WP_004678848.1\|1915337_1915685_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|224775
NZ_CP013574.1\|WP_010019030.1\|1935023_1935683_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013574.1\|WP_004673842.1\|1935813_1935987_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013574.1\|WP_064825185.1\|1929309_1930113_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197306
NZ_CP013574.1\|WP_064825186.1\|1930172_1931579_-\|Si-specific-NAD(P)(+)-transhydrogenase	unknown	unknown	gnl\|CDD\|235373
NZ_CP013574.1\|WP_010010978.1\|1931677_1931803_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178801
NZ_CP013574.1\|WP_012483608.1\|1918274_1918661_+\|Mth938-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226260
NZ_CP013574.1\|WP_012483619.1\|1931828_1933016_-\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NZ_CP013574.1\|WP_064825183.1\|1923084_1924188_+\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|227209
NZ_CP013574.1\|WP_064825180.1\|1918663_1919521_+\|phytoene/squalene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NZ_CP013574.1\|WP_064825182.1\|1920068_1921499_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	unknown	unknown	gnl\|CDD\|235416
NZ_CP013574.1\|WP_004678841.1\|1921597_1921741_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP013574.1\|WP_064825184.1\|1927374_1929150_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|214792
NZ_CP013574.1\|WP_016732904.1\|1924184_1924775_+\|GDYXXLXY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379571
NZ_CP013574.1\|WP_004673840.1\|1933950_1934787_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576

Protein	Function_ID	Function_description	E-value
NZ_CP013574.1\|WP_004678838.1\|1922040_1922187_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	7.56647e-09
NZ_CP013574.1\|WP_010020842.1\|1933118_1933943_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	1.07858e-107
NZ_CP013574.1\|WP_016732904.1\|1924184_1924775_+\|GDYXXLXY-domain-containing-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	4.5708e-43
NZ_CP013574.1\|WP_004673833.1\|1926857_1927280_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|226158	COG3631, COG3631, Ketosteroid isomerase-related protein [General function prediction only].	1.35936e-11
NZ_CP013574.1\|WP_064825179.1\|1915729_1918270_+\|protein-translocase-subunit-SecDF	gnl\|CDD\|237805	PRK14726, PRK14726, protein translocase subunit SecDF.	0
NZ_CP013574.1\|WP_004678848.1\|1915337_1915685_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|224775	COG1862, YajC, Preprotein translocase subunit YajC [Intracellular trafficking and secretion].	4.2566e-32
NZ_CP013574.1\|WP_010019030.1\|1935023_1935683_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.24163e-08
NZ_CP013574.1\|WP_064825185.1\|1929309_1930113_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197306	cd08372, EEP, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily. This large superfamily includes the catalytic domain (exonuclease/endonuclease/phosphatase or EEP domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps proteins.	5.07614e-13
NZ_CP013574.1\|WP_064825186.1\|1930172_1931579_-\|Si-specific-NAD(P)(+)-transhydrogenase	gnl\|CDD\|235373	PRK05249, PRK05249, Si-specific NAD(P)(+) transhydrogenase.	0
NZ_CP013574.1\|WP_010010978.1\|1931677_1931803_-\|hypothetical-protein	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	6.2226e-07
NZ_CP013574.1\|WP_012483608.1\|1918274_1918661_+\|Mth938-like-domain-containing-protein	gnl\|CDD\|226260	COG3737, COG3737, Uncharacterized conserved protein [Function unknown].	1.27074e-58
NZ_CP013574.1\|WP_012483619.1\|1931828_1933016_-\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	3.32695e-157
NZ_CP013574.1\|WP_064825183.1\|1923084_1924188_+\|DUF2157-domain-containing-protein	gnl\|CDD\|227209	COG4872, COG4872, Predicted membrane protein [Function unknown].	5.2823e-42
NZ_CP013574.1\|WP_064825180.1\|1918663_1919521_+\|phytoene/squalene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	8.28964e-60
NZ_CP013574.1\|WP_064825182.1\|1920068_1921499_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
NZ_CP013574.1\|WP_004678841.1\|1921597_1921741_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	9.51621e-12
NZ_CP013574.1\|WP_064825184.1\|1927374_1929150_-\|radical-SAM-protein	gnl\|CDD\|214792	smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.	5.93895e-21
NZ_CP013574.1\|WP_004673840.1\|1933950_1934787_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	3.87967e-163

>NZ_CP013574.1|WP_016732904.1|1924184_1924775_+|GDYXXLXY-domain-containing-protein
MSSLMARLQSGKGYLLSAVIVAGLQTIILGMIIQSRASILGNGAEVLLKTAPVDPRDFLRGDYVVLNYDISSVPVQTVSGGIPAEPGERTLWVRLKKQADGFWTVTESSFQRLPPQPETVILRSQPFYSGGLAAGDSIRVEYGIERYYVPEGQGKPLEEARNDGNVAIAVRVSPDGSAQIRSLLVDGKPVYDEPLY
>NZ_CP013574.1|WP_064825183.1|1923084_1924188_+|DUF2157-domain-containing-protein
MYRGRLERDLSLWVGKGLLGEETAGALLAEYDGRPASFSLGRVLMALAAVLLAAAVLLVVASNWEAIPRLVRVGAILALIWAVHIAAALMLARGAAAAAGGLLVIGAMSFGGAISLVGQMYHLSGDEQTVMYLWFAIATISAILFRSGAVVVVAGFLSWASFAVYLENHDTHWIGLDPWMAPVMAVIVIALVRYTGAARARHLAYLLLIGWLAWLYTLYEEIAVALAFAVGGMAGVVLTALPHPRIAPLVRSAGAAPAFYSFLVAAIGFLLLHVEIEQGWRLVVLGLATLAAAVLAIALHGRNNGAVRYLAYTTFAAEMLYLASVTVGSILGTSSLFLFSGLVVALVAWIVIRLERRFSANSREARA
>NZ_CP013574.1|WP_004678838.1|1922040_1922187_-|DUF1127-domain-containing-protein
MNITRSFNNWRKYRQTVTELGRMTNRELHDLGIDRSDIHRVAREASSR
>NZ_CP013574.1|WP_004678841.1|1921597_1921741_-|DUF1127-domain-containing-protein
MNPIRIAKSWLSYRRTLNELGSLSNQTLSDIGVSRYDIRNIASRSFR
>NZ_CP013574.1|WP_064825182.1|1920068_1921499_-|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO
MNTISYPPIHVVGGGLAGSEAAWQIASSGVPVILHEMRGVRGTDAHKTDGLAELVCSNSFRSDDATSNAVGVIHAEMRMAGSLIMAAADRHQVPAGGALAVDRDGFSEAVTKAIHDHPLITVVREEITGLPPRDWDLAIVATGPLTAPSLASAIQAQTGEDSLAFFDAIAPIVYRDSIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALIAGDTVGFKEWEGTPYFDGCLPIEVMAERGRETLRHGPMKPMGLTNAHNPTVKAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQAEIFRMIPGLENAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAERKGEAILLPPATTALGSLLGHITGGHIVTDEEPGKRSFQPMNINFGLFPELEPGSIVKPEGVKRFRGKDKTIMKRQLIARRALADCAAWLGQTPRFAESA
>NZ_CP013574.1|WP_064825181.1|1919591_1920059_+|hypothetical-protein
MGIIVWCVLFAIVIFIAFVATRMAAQNKEDSLHDTGLAIIEFGRAFPNEAIRQLQATENGQAIFVRLHDNKAGLMRNMARHFSCHLIEPGRVRVVSSETGRGLAIEFLDAPNHNGKFEFASPKEASEVALWLLGNYIAEPDKDLPAGHISAANKQ
>NZ_CP013574.1|WP_064825180.1|1918663_1919521_+|phytoene/squalene-synthase-family-protein
MAEENIATNQDICLAMLRDSDRDRYLACLLSPQDKRGALAALYAFNAELARIRDLVHEPLPAEVRMQYWRDLLEGSAHGSTAANPVAAALLTAIETHRLPRKTLVDMIEARTFDLYDDPMETRLSLEGYAGETASALIQLANLVLSPQDAARSADAAGHAGVAQAIAGLLLLMPLHRRRGQLYIPLQILSATGLDRDSFLAGEDRPRIAAAVEAFAGLGREHLAKARGAGPIAPAVFPAFLPATLAEPVLLKAQRRGAQLFDRSLQPPQWRRQLAMALAAARRKI
>NZ_CP013574.1|WP_012483608.1|1918274_1918661_+|Mth938-like-domain-containing-protein
MAKGIEIRAAHFPGRAPIDTYGNGGFRFADMSHRGSILCLPSGIHGWDMDMSKPLSPENFRRVLDEAAAIEVLLVGTGTELRRLPEELKQALKARGIASDPMSTGAAVRTFNIMLAEQRAVAAALIAV
>NZ_CP013574.1|WP_064825179.1|1915729_1918270_+|protein-translocase-subunit-SecDF
MLHFSRWKTLLIWLVAFAAVVIAAPNLLSEAQRASLPDWLRHDRVMLGLDLQGGSQIVLKVERSDIVKDRLEEAVANVRNALRGAGIRYTGLTGNDRIVSVRITDPAETQKAVDRLKSLTTTGRDSASELTLQQGGEGQLSLQISDADITADVASARTRSLDIVGRRIAGFGYENFLVRPEGDDRITVQVLGSVDAERLKNLLNQPAKLSFHLIDESMSGQEALNGRWPATSQVLYSLDDPPVPYLVDRTAFASAGNMVDIQPVVDPQTQDTSIAYRLDAEGTKRLAEVTGQNIGKHLAIVFDDQVMSAPAIDAAITNGEGRISANFSEDGVRDLAVMLRAGALPATLTSVEERSVSPTFGGESIVSGFVAGLVAVVLVAALMIALYRILGVIAVVSLFFNLILIIAALSLAGATLTLPGIAGIVLIVGMAVDSNVLVYERIREEEKTAHSFAEAVGRGFSRAFATIVDANVTIFIAAVILFFLGSEAIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRHPRHLPKSVLTHLFEHANIRFMGIRRYVFTASAAISLIAMAAFATVGLQLGIDFTGGSLIEVTAKQGNADIADLRSRLNDLNLGEVGVERTGGPANARIRIASQGGGENAEQSAATLVRGELEADYDFRRVEVVGPAISGELTMMATLGIAAALAAILLYIWIRFEWQFAVGAIIATLHDVIIMLGLFVLTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLKRYTKMPLPILIDASINQTLSRTVLTAATTLLALLALYLFGGDVMRSFAFAMLFGVALGTFSSIYIAAPVLIVFRLRPESPDGEESNKTDAGVKSGTVV
>NZ_CP013574.1|WP_004678848.1|1915337_1915685_+|preprotein-translocase-subunit-YajC
MFITPAFAQSATDTATGFGGSGFEMIILFVPLMVVWYFLLIRPQRAQAKKREETLKAIRRGDQVVTGGGLVGKVTKVVDDKEVEVEIAEGVRVRIVRSGISEVRVKGEPVKADAA
>NZ_CP013574.1|WP_004673833.1|1926857_1927280_+|nuclear-transport-factor-2-family-protein
MTEKHDMKKLVEEIYAVRGRGDIEGTLALIGDDCTFRMAGNTRLSPLSTEMGGQAFRQVIAQLITVWDLSKVNTTGIYVDEDEHIVFAHREGEVRHIPSGVSFYTEYVDKIHFRDGKPVKIVEFVDTLQVAETSQIIQIA
>NZ_CP013574.1|WP_064825184.1|1927374_1929150_-|radical-SAM-protein
MSHALEAARRRFQLILIKPSHYDDDGYVIRWWRAMIPSNSLAALYGIAAECAERQVLGPDTAIDITVIDETNTRVDFARLLAQFKRHGNFGMVALVGVQSNQYPRALDIARPFRNAGLPVSMGGFHVSGCLSMLDGQAVGLDACRDMGISMFAGEAEGRLDMVLRDAASGELKPLYNFMNDLPGIGGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRMNWAQGIHKFFITDDNFARNKDWEAIFDRLIELKERDGIPLGLMIQVDTLCHKIPNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQGIMTLAGYILGFPADTPESIRRDIAIIQEELPLDVIEFFILTPLPGSEDHQVLWKKGVEMDGDLNIYDVEHVCTAHPKMSKQEWEDIYHEAWSLYYSPDHMKTLLRRAVATGVPLARLVKVLVSFATTVPLENVHPLQSGLLRLKTPSERRPELPRENPLLFWPRFAWETFRKHASLAGTIVGLTISAFLISRDAKSKAYMDQALTPVADDEEETLSLFTKTSGGTAAVSHVRKVAQLTRGAN
>NZ_CP013574.1|WP_064825185.1|1929309_1930113_-|endonuclease/exonuclease/phosphatase-family-protein
MRIISLNAWGGSLHEALIDYVRQADADVLCLQEVLRAPDSGSGWSIYRDSGLELPQRANLFAEIGAALPGHDGFFCPTSRGMLFDGDAAIAAEFGLATFVRKSHSVIAQAIDFVHGSFSAAGWGEHPRPRNAHCIRVFSHANASAITIAHMHGLRDPAGKGDTPAREEQALALAGLVERVWPGSEGLVVCGDFNVLPDSATFNILARMGLSDLVTGNGLVDTRTSYYLKQGRFADYMLVTPEVKVARFEVVATPEVSDHRALLLDIV
>NZ_CP013574.1|WP_064825186.1|1930172_1931579_-|Si-specific-NAD(P)(+)-transhydrogenase
MFQYDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQGKRVGGVSVHTGTIPSKTLRETALNLSGWRERGFYGRSYRVKQEISAEDLRRRLLITLNHEVEVLEHQFARNRVHHMRGKASFVDASTLQVVKDDGEITQVSAASVLLAVGTKPFRPDYMPFDGKTVLDSDELLDIQELPRSMIVIGAGVIGIEYATIFSALDTAVTVIDPKATMLDFIDKEIVEDFTYQLRDRNMKLLLGQKADKVETLENGKVELTLDSGRRLTTDMVLFAAGRMGATDTLNLPAIGLEADSRGRLKVNPETFQTSVANVYAAGDVVGFPSLASTSMEQGRIAARVAIGAVAKEPQKYFPYGIYAVPEISTCGLTEEEMKERGIPYECGIARFRETSRGHIMGLDTGLLKLIFSLKTRRLLGVHIVGEGATELVHIGQAVLNLKGTVEYFVENTFNYPTLAEAYKIAGLDAWNRMGDIKSEL
>NZ_CP013574.1|WP_010010978.1|1931677_1931803_-|hypothetical-protein
MTKVIIDAAKALAIIVHDQIIIGKNGHVGLKGLTLIEHRSG
>NZ_CP013574.1|WP_012483619.1|1931828_1933016_-|alpha-hydroxy-acid-oxidizing-protein
MTIRSGNTDRSSRLCRDVLCLDDFEIKARRHLPKPLFGYIAGATETNASLRHNAEAFQAYAFRPRVLRDVSTRSTATSLFGKTHAVPFGIAPMGISALMAYRGDIVLAQGADQSGIPMIISGSSLIPLEEIAAASPQAWFQAYLPGEPDRIDALIDRVAAAGIDTLLLTVDTATLPNRENNVRAGFSTPLRPGLRLAWQGISHPRWTTGTFLRTIARHGIPHFENSYATRGAPIISSNVTRDFGKRDHLNWSHLERIRKRWSGKLVVKGIMHPEDAARAADTGADGVIVSNHGGRQLDGTASPLQVLPEIAARVGDSIAVMVDGGIRRGTDIMKALALGACFVFVGRPFLYAAAVAGLPGVLRAADILKTELYSNMALLGVTRVGDISADYITRA
>NZ_CP013574.1|WP_010020842.1|1933118_1933943_-|DNA-repair-protein-RadC
MAKRPAATSSNDELPFATEEPVADERSFFGGPPQNPTAPNARAALPASLSGPEHYHGHRERLRDRFREQGDTALADYEILELLLFRLIPRRDTKPIAKALIDRFGSLSGVFGAPAGLLTEVKGVGENVALDLKLISTVAHRTLKSEIRSKQVLSSWSSVIQYCHAAMAHETREQFRILFLDKRNVLIADEVQGRGTVDHTPVYPREVVKRALELSATAIILVHNHPSGDPTPSRADIDMTKVIIEAAKALDITVHDHIIIGKDGHVSLKGLKLI
>NZ_CP013574.1|WP_004673840.1|1933950_1934787_-|type-I-methionyl-aminopeptidase
MVNYIEASSAPPKNTGAIRLYDTQAFDGMRKACQLTARCLDALADIVKPGLLTDEIDRFVFDFGMDHGAYPATLNYRGYTKSTCTSINHVVCHGIPNDKPLREGDIVNIDVTFVLDGWHGDSSRMYPVGTVKRAAERLLEVTYESLMRGIAAVRPGARTGAIGEAIQTYAEAERCSVVRDFCGHGVGRLFHDSPNILHYGRANEGPELREGMIFTIEPMINLGRPHVKVLADGWTAVTRDRSLSAQYEHTVGVTADGCEIFTLSPAGLDRPGLPSLAR
>NZ_CP013574.1|WP_010019030.1|1935023_1935683_+|TetR/AcrR-family-transcriptional-regulator
MLNEAVNLNSSPEAGDEPERRVRDRGATERAILAAAKGLLAEEGFQNFGINAVARRAGCDKQLIYRYYGGLDGLVEAIGADLGTWVRDRIPEDAGGMFLLTYGDLMERLALLLLDALRNDPLMRRILAWEVSENTEQVRRLSEARSKALALWLDRMRGSLAPPKGVDAAAVNAVVIAAIQHLVLAGAAGGQCAGLSLKTSKDWEKAATALKRLVRGVYG
>NZ_CP013574.1|WP_004673842.1|1935813_1935987_+|hypothetical-protein
MGSKIARAVFLVTAIMFFAVLALDIAIPTLVLCTMALSTWVVSLDLPVMRKQRGEAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1512188 : 1521389

Enterobacteria_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012483354.1\|1512188_1513487_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	5.4e-97	51.2
WP_003547190.1\|1513496_1513973_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_012483355.1\|1513976_1515344_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	6.8e-34	38.6
WP_012483356.1\|1515343_1515955_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.0e-17	35.6
WP_012483357.1\|1516006_1516876_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	1.2e-95	59.0
WP_012483358.1\|1516885_1517773_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_064825071.1\|1517776_1518832_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.1e-95	51.5
WP_012483360.1\|1518838_1519417_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	8.1e-37	48.1
WP_064825072.1\|1519406_1521389_-	hypothetical protein	F2Y0P4	Organic_Lake_phycodnavirus	8.8e-06	36.4

DBSCAN-SWA_2

1856627 : 1872040

Pseudomonas_phage(45.45%)

capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150129119.1\|1856627_1857947_+	hypothetical protein	A0A0P0IVT4	Acinetobacter_phage	4.0e-63	36.6
WP_064832551.1\|1858047_1859478_+	DUF4055 domain-containing protein	A0A2D2W2J8	Stenotrophomonas_phage	1.6e-81	40.7
WP_064832553.1\|1859461_1861375_+\|capsid	minor capsid protein	A0A0S0N1M5	Pseudomonas_phage	3.8e-75	41.7
WP_064832556.1\|1861367_1861574_+	hypothetical protein	NA	NA	NA	NA
WP_064832558.1\|1861576_1861846_+	hypothetical protein	NA	NA	NA	NA
WP_064832560.1\|1861864_1862407_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_064832562.1\|1862403_1862958_+	hypothetical protein	A0A0F7L6W0	uncultured_marine_virus	7.9e-05	26.4
WP_064832564.1\|1863054_1863819_+	hypothetical protein	A0A125SA37	Pseudomonas_phage	7.5e-06	28.8
WP_064832566.1\|1863857_1864850_+	hypothetical protein	A0A0S0MZV3	Pseudomonas_phage	2.5e-33	34.4
WP_064832568.1\|1864908_1865313_+	hypothetical protein	A0A2D1GNQ9	Pseudomonas_phage	1.9e-08	60.4
WP_064832570.1\|1865317_1865893_+	hypothetical protein	D6PFP8	uncultured_phage	1.8e-07	37.6
WP_064832572.1\|1865896_1866286_+	hypothetical protein	NA	NA	NA	NA
WP_064832574.1\|1866282_1866468_+	hypothetical protein	NA	NA	NA	NA
WP_064832576.1\|1866467_1866860_+	HK97 gp10 family phage protein	A0A220IHC8	Escherichia_phage	1.2e-15	37.8
WP_064832578.1\|1866856_1867270_+	hypothetical protein	NA	NA	NA	NA
WP_064832580.1\|1867317_1868259_+	hypothetical protein	A0A2I6PI45	Pseudomonas_phage	5.0e-36	34.5
WP_150129120.1\|1868258_1868543_+	hypothetical protein	NA	NA	NA	NA
WP_064832582.1\|1868503_1868926_+	hypothetical protein	NA	NA	NA	NA
WP_064832584.1\|1869027_1869267_+	hypothetical protein	NA	NA	NA	NA
WP_064832586.1\|1869271_1872040_+\|tail	phage tail length tape measure family protein	A0A0B5A0F2	Paracoccus_phage	2.0e-11	26.8

DBSCAN-SWA_3

1878466 : 1884775

Sinorhizobium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064832594.1\|1878466_1878895_+	hypothetical protein	A0A1W6DX38	Sphingobium_phage	3.9e-44	65.5
WP_064832596.1\|1879038_1879410_-	hypothetical protein	NA	NA	NA	NA
WP_190304581.1\|1879396_1880038_-	SocA family protein	A0A139ZPG5	Marinitoga_camini_virus	3.2e-10	27.2
WP_064832601.1\|1880040_1880262_+	hypothetical protein	NA	NA	NA	NA
WP_081278357.1\|1880290_1880725_+	lysozyme	A0A0K1Y6F2	Rhodobacter_phage	2.1e-29	47.1
WP_064832604.1\|1880725_1881100_+	hypothetical protein	NA	NA	NA	NA
WP_064832605.1\|1881081_1881369_+	hypothetical protein	NA	NA	NA	NA
WP_064832606.1\|1881427_1881751_+	DUF1515 family protein	A0A291AUW4	Sinorhizobium_phage	5.0e-20	52.8
WP_064832607.1\|1881918_1882236_-	hypothetical protein	NA	NA	NA	NA
WP_064832641.1\|1882353_1882728_-	thermonuclease family protein	G8DH70	Emiliania_huxleyi_virus	1.1e-23	47.9
WP_064832608.1\|1882958_1883738_-	Ig-like domain-containing protein	NA	NA	NA	NA
WP_064832609.1\|1883778_1884018_-	hypothetical protein	NA	NA	NA	NA
WP_064832642.1\|1884022_1884775_-	SOS response-associated peptidase family protein	A0A291AUP1	Sinorhizobium_phage	6.6e-39	39.7

DBSCAN-SWA_4

1905167 : 1918270

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041683873.1\|1905167_1906181_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	6.2e-24	41.9
WP_029531141.1\|1906199_1907057_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.6e-33	36.7
WP_012483599.1\|1907053_1907758_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	3.3e-40	48.2
WP_012483600.1\|1907945_1908137_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.9e-09	70.5
WP_012483601.1\|1908188_1908815_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_012483602.1\|1908811_1909639_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.2e-52	46.1
WP_012483603.1\|1909735_1911019_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	9.7e-99	45.8
WP_004678859.1\|1911023_1911797_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.8e-23	30.2
WP_010025231.1\|1911793_1912447_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.2e-16	35.7
WP_016732897.1\|1912586_1914176_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	5.0e-12	30.0
WP_064825178.1\|1914261_1915134_-	ATP-binding protein	NA	NA	NA	NA
WP_004678848.1\|1915337_1915685_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.1e-12	39.1
WP_064825179.1\|1915729_1918270_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	4.3e-58	50.2

DBSCAN-SWA_5

2153132 : 2163395

uncultured_Mediterranean_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012483791.1\|2153132_2156054_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.2
WP_004671899.1\|2156336_2156852_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.2e-44	72.9
WP_004671901.1\|2156953_2157601_-	MarC family protein	NA	NA	NA	NA
WP_029531195.1\|2157838_2160661_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	8.8e-76	42.6
WP_003539654.1\|2161062_2161218_-	hypothetical protein	NA	NA	NA	NA
WP_064825256.1\|2161360_2161639_-	hypothetical protein	NA	NA	NA	NA
WP_064825257.1\|2161729_2162224_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.6e-25	37.8
WP_012483798.1\|2162282_2162855_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	5.7e-43	53.2
WP_004671916.1\|2162885_2163395_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.2e-44	58.8

DBSCAN-SWA_6

2649363 : 2656607

Paenibacillus_phage(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_097541909.1\|2649363_2650124_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.4e-23	42.1
WP_064825372.1\|2650192_2650915_-	SOS response-associated peptidase	B7SYF4	Stenotrophomonas_phage	3.9e-20	31.2
WP_064825373.1\|2651197_2651665_+	DUF3828 domain-containing protein	NA	NA	NA	NA
WP_003540801.1\|2652163_2652376_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.5e-12	57.1
WP_064825374.1\|2652531_2653023_+	DUF1643 domain-containing protein	D4FUM9	Pseudomonas_phage	2.8e-62	67.3
WP_064825375.1\|2653179_2654181_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_064825376.1\|2654246_2655203_-	trypsin-like peptidase domain-containing protein	A0A1B1IRH0	uncultured_Mediterranean_phage	7.2e-14	31.8
WP_064825377.1\|2655770_2656607_+	alpha/beta hydrolase	A0A0M4S5M2	Mycobacterium_phage	7.7e-12	26.9

DBSCAN-SWA_7

3920367 : 3930486

Mycobacterium_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012485329.1\|3920367_3921078_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	2.1e-50	48.7
WP_012485330.1\|3921077_3921434_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_012485331.1\|3921430_3922159_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	4.0e-41	38.2
WP_012485332.1\|3922241_3923486_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	1.9e-14	29.5
WP_064825673.1\|3923587_3924562_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	4.7e-138	74.4
WP_041683783.1\|3924741_3926946_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	3.9e-212	51.8
WP_012485335.1\|3926924_3927329_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_010068756.1\|3927345_3927567_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.8e-16	52.1
WP_012485336.1\|3928242_3930486_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.1e-127	37.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013575

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013575_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013575_1

51325-51427

Orphan

Consensus_repeat	Method
CTTCCGCAAGGGTCCCGACTTCTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013575_1

>merge|NZ_CP013575|1|51325-51427|CRISPRCasFinder
CTTCCGCAAGGGTCCCGACTTCTCGGCTGCCCCCAAGCAGGCCGACGGCCAGACGGATGCCAAAAGCGACGCCCCGAGCTTCCGCAAGGGTCCGGACTTCTCG

>NZ_CP013575|1|1|51325-51427|CRISPRCasFinder
CTTCCGCAAGGGTCCCGACTTCTCG	GCTGCCCCCAAGCAGGCCGACGGCCAGACGGATGCCAAAAGCGACGCCCCGAG
CTTCCGCAAGGGTCCGGACTTCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013575.1\|WP_064832695.1\|54181_54457_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_064832699.1\|55674_55872_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_064832685.1\|40032_41196_+\|DUF4263-domain-containing-protein	unknown	unknown	gnl\|CDD\|372906
NZ_CP013575.1\|WP_064832690.1\|48217_48931_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_064832696.1\|54467_54761_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_189637928.1\|47948_48119_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_150129127.1\|53870_54173_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_064832687.1\|43264_43933_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_064832700.1\|55873_56743_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277349
NZ_CP013575.1\|WP_064832688.1\|44385_45177_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_064832701.1\|57168_57681_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_064832691.1\|49071_50340_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_064832756.1\|41208_41784_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198383
NZ_CP013575.1\|WP_081278363.1\|56769_57168_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP013575.1\|WP_064815746.1\|41812_42523_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_150129126.1\|42770_43061_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_064832689.1\|45182_47681_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|313610
NZ_CP013575.1\|WP_064832698.1\|54975_55665_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_064832697.1\|54757_54961_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013575.1\|WP_064832693.1\|52081_53521_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240289

Protein	Function_ID	Function_description	E-value
NZ_CP013575.1\|WP_064832756.1\|41208_41784_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198383	cd10436, GIY-YIG_EndoII_Hpy188I_like, Catalytic GIY-YIG domain of coliphage T4 non-specific endonuclease II, type II restriction endonuclease R.Hpy188I, and similar proteins. This family includes two different GIY-YIG enzymes, coliphage T4 non-specific endonuclease II (EndoII), and type II restriction endonuclease R.Hpy188I. They display high sequence similarity to each other, and both of them contain an extra N-terminal hairpin that lacks counterparts in other GIY-YIG enzymes. EndoII encoded by gene denA catalyzes the initial step in degradation of host DNA, which permits scavenging of host-derived nucleotides for phage DNA synthesis. R.Hpy188I recognizes the unique sequence, 5'-TCNGA-3', and cleaves the DNA between nucleotides N and G in its recognition sequence to generate a single nucleotide 3'-overhang. EndoII binds to two DNA substrates as an X-shaped tetrameric structure composed as a dimer of dimers. In contrast, two subunits of R.Hpy188I form a dimer to embrace one bound DNA. Divalent metal-ion cofactors are required for their catalytic events, but not for the substrates binding.	9.26892e-19
NZ_CP013575.1\|WP_081278363.1\|56769_57168_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.77654e-05
NZ_CP013575.1\|WP_064832693.1\|52081_53521_+\|hypothetical-protein	gnl\|CDD\|240289	PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional.	0.00227345
NZ_CP013575.1\|WP_064832689.1\|45182_47681_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	gnl\|CDD\|313610	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.	1.43587e-07
NZ_CP013575.1\|WP_064832700.1\|55873_56743_+\|metallophosphoesterase	gnl\|CDD\|277349	cd07404, MPP_MS158, Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.77684e-43
NZ_CP013575.1\|WP_064832685.1\|40032_41196_+\|DUF4263-domain-containing-protein	gnl\|CDD\|372906	pfam14082, DUF4263, Domain of unknown function (DUF4263). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 244 and 403 amino acids in length.	6.03309e-28

>NZ_CP013575.1|WP_064832691.1|49071_50340_+|hypothetical-protein
MADETQNPTDKTFTGKHFADVMAQWPSGESTLASIAETVLRGDGAEFKDFGTDYTVEGDQLVATFHDGNIRRTDAAEFMTAVGQRYPAQLEAAESDIEQEHFAALTTRQKLDFLLSDDCHLSEYQQLRGTVELLSTLDGVQSHTTSDLTEYKLQDGKLIVRDVDPASEEKHWSIYDANDLSVINSHTREELAREMRIDEAAFMETLEQTLLHMREEGVSEVENQRHGTFRLEGDMITLVQSDGDFSARALNDLSTDLTDEQIAAHRAPTEQTRSLPVSDAVLDEVFEKHADPYMRSVHGLDDAMPALSSEQVAQLVVQVSEDDRRTQADESFKHGFPSNFMAAEIDEFTANVEAARAYWAENPHPLQQTPSMETPADDQVDYGPAVENVRKLRFAAMADRAEAAACHDKGGRTLETTNEQGA
>NZ_CP013575.1|WP_064832690.1|48217_48931_+|hypothetical-protein
MKFGGSGGGGSFDNDDERNKKSAAASRGSYTPSYDMKGGNAYVGGQSREADSQQAYVRDAGPTMPKQSRHEQARTDNLIDAGKAIEAKEAVEGKMQPPKQPGQQAEQGQKQEKKANIHDTPQAMARQEHLTSRLRGRLDALQGANLQQFGERKPITGEKNMEAARSSYQATKAEIKKGNFAEMAERAQRAAGDQQHGQSTEMSKGGFAGMADRASAAAKPTPQTGTGIKKDTGMEQG
>NZ_CP013575.1|WP_189637928.1|47948_48119_+|hypothetical-protein
MRLIAFAIIGIPIFATFLASQRADRNLQDCWAKHGVTFSCHGDGKYDPDRSLRRPE
>NZ_CP013575.1|WP_064832689.1|45182_47681_+|type-IV-secretion-system-DNA-binding-domain-containing-protein
MDFRPILNAVFFFALYPFKLVFGTIKGILNTILVFVARLLRLDKLVSKMSSWLIRRSDRFFAFHRNPLLRGDLLAYAEQEYPRDLYPTAWEDIPDDVRHELVWDGRLLNGRRVAELAKAKITDEVVGNALVRSGVHALALTFLITSIPLYIAAMDSGRGLAGIFGGHTPFPSWAWVNGAILPVAAWGLLTVIERIGNVLQIAVVSGLGLLAFPLFWLFAFAHAMNGAWDSASYSLRVATRDSEVFWKSNILGRRNQYLAYCREVENACHRLKDQPIIPVGQATGLIRGRGDMEAPDRGTIVCYDGESIRQHTLILGGTGSGKTRLVIKPLFKRIMEANWGVSHKIGAYVTDGKGTLWQALAKVVAHRDDIAILGTHEDHFGLDLCQGMTPLEISTTFKAVAGQINGEPKDSFWPESASLLLMHSATVARAIQMSGGVREKWRTTRRCMPYSLIGIAQIASNTTLMRECFAECAALARFLMDEDDVDDETTAIMTAADQSIEWLEGSHLSLGDHTKGSIIANVSSVLGKLSGAPDITARFCSGAFEKSVDVDHALKGGILFVAIGETEHGMAGKVVNCWLKTRLYILAKRRLLTDPEGCRNTSCALVADEFQMLATVGPDTDTTFWNIARETGVFMIAATQSVAALHQAIGHHATSNLMNLLRSKVILKTEERETLEYAKALAGEVARGWEYESSFYATQAIRQLEYNDNFAPQIEVGGFHGLGPQSFTASTEQYQPYDASHIGAMWERASHQVGGGGAGGSVDIGDGGASQNAQQMAMREEDQNRQSFIGTLQMRPKIDTDELLVGSGMAFAIIQRAGGDRMDVIDLEKIAA
>NZ_CP013575.1|WP_064832688.1|44385_45177_+|hypothetical-protein
MTEHQRNVIAASEVPAIDATPADQVQPEAAPVEYPDGINPRWDVAQIATRGHILVGRLEYIFDKVKLPSIWLWFLLLVLTWLMLNGKIEAFGPRLMRLDSAGTFQRMLTYDPSTYFDIGGGVHAGPDLAWLGHYAPTPESLSVADHEALIAAVVADSAQFGTDLDKWAAVPELKTQPTVTRPAKAFAKNSAELRNGVVSVPEDGRDIVVAAYVEGRWAFTIVRSGECGSMVGPVVKQCHNETRDDGRWSNMVVSTINTLKPKE
>NZ_CP013575.1|WP_064832687.1|43264_43933_-|hypothetical-protein
MNSEKSDDSDSVETFLASRNAASGGPNTKRPNALMLLTIGIVIAGLGYGGTKMYGAIRERQAAVERKKQDEIAARETERAIELARIADQKREQIKNADSETLKGLINSCQDQINAVFSKSVFGINFPHYSPDDLQKFADVGAAFKMPLGGWPSAVLDNYDFDIVAWNLARITDKDYPITSVSFVVEGSQDGFSVRHYAAVFTCDLDGLRAEEPDRTEIHYLD
>NZ_CP013575.1|WP_150129126.1|42770_43061_-|hypothetical-protein
MDSHAVIEALPVTGDQRAALIKIANRVFEKVIDRIEPENESLTRELWDPGDYIDNFFQDKELPMELDYADYLIDALLVHHVIDLAVQADERAEQPD
>NZ_CP013575.1|WP_064815746.1|41812_42523_-|hypothetical-protein
MSFLRNSVVQVGSWIVLIGCGLWIYYEPGFEPAIGLVAGIVGIASNHAPIFGSKTRILTPEEKIALRDKWRPTFKDFFLHAARDKYRTDVIVHEVARVDDYPNTDEKEKGISSWFRVGFMGTYDRGVLLGLRWTYVNKEANGWKEYTSAPPETAIKVMLLGAVPYEAIESFNPDGDEYYNKPHLYCHFDFGGEPYERLYYGEQKQLFEDAPYYFTEIAEFTKPGLFERLKWRFTKR
>NZ_CP013575.1|WP_064832756.1|41208_41784_-|GIY-YIG-nuclease-family-protein
MTTSARIRELASQGLETAEIARQLGIRYQHVYNVLKASRTSPTPTVKQKRVAPSTTTKPPLPLSVLTEGGFAFAGRWMFSPTEELVVDVPLPKEVGVYTFVKHGFALYVGVATMGISKRLYFYGRPGTSQRTSKRLNALIKGELLASGSIDIYVAIPPDLEWNGLPIHGSAGLELGLIKKYALPWNMRSAG
>NZ_CP013575.1|WP_064832685.1|40032_41196_+|DUF4263-domain-containing-protein
MSSEDDIFHNSRPEKTYASPAFKDYTGQRLRIANKVVDGQPGYEFAKVKEEIVLRQTAGGRFQIKASFLEDDRSFRTVTIQKFTSKGNAKAYFAFGPGEVNALLKFITNIKRIHFPDDGRLNIRDSDLEELLLEPDQMRRIAADNQQLLAAIARSEITTEDVVALSYRKKQVGIFERLLFDDDYFDHCVSQHGKGAEGLWQRFLEKNPWILGYSLSLTNFGPLDERKLEQTVRGHDLGGPGKRVDALLRSRAVLNTAAFVELKHHRTELVSAEQYRSGIWAPSKELSGAVAQVQGTVAAAVERWGASVRLTDNDGEPTGEMIYTTEPRSFVICGRLSEFQGDRGVNERKFGCFERFRRSLFRPEVVTFDELYERARLIVEGDDRATS
>NZ_CP013575.1|WP_064832693.1|52081_53521_+|hypothetical-protein
MKKTITATIAALFLTTSLVGPAAAGNDLLRLGIGVGAALIGEAMKGGGNHRSGGREPGKGDTLLGPVGGKQQPTRQASGKSKPAKADDKAQWASYVPTTPPIPASKPTDEEMVAWAAAVPEREAQEQQADAEMAQAPVVATDATTTAAVTATPAADVAVAPTAPAEEATEEARYGDEYWGKITKSQMEKALKFGSLGMSTPDAYRAIGLKGPIDEQAAEPTGFDLIDENGKLWGNVPKEKADNVWKAVDMGMKPSDAIRAIAKLEDPDVVKAKAAAEAEADKVAADKTRASCLDKAVTMPGTKWTECSQYQAEMDAAARKDKADYMARGEPVLAGCIEKRLDPATKDQRFKECEPLEKDIAFVIDLQKHPGTVFEGPSAEEKAYRARIEERQEQAAKEQAKRDEAVAVQKQLNEILGPQSAAPSAENKPAFSAPSAKNQTAAAPSIDDGKTAAIDEAKPEAAKPVEQQPPAKKKMKLDL
>NZ_CP013575.1|WP_150129127.1|53870_54173_+|hypothetical-protein
MSVDETLDEIAEVLMNSTSLYWGRAGVNALLVELGIEDDFLDGYPLDSIGRDGITVYAQRYLVGHYRADHDGPDFDELMMAAGIRRGLKPVVLHEADAIH
>NZ_CP013575.1|WP_064832695.1|54181_54457_+|hypothetical-protein
MTKGFPFIEYDTLARFVTKDRPRELVRAKFLASGEFQTLLEEGGHSVEVIAAQANIDPADIERLLANSLDVDLDTILKAVAAVRYLNDTSH
>NZ_CP013575.1|WP_064832696.1|54467_54761_+|hypothetical-protein
MSQKSNQAAAGLLVIGLVAAAFHVVGSNPLVTGVLGMAQANREWQAESAKAAYERNYTVICPRYRDAGFATRWASPWMWENSWCADYLDRLPPKEQS
>NZ_CP013575.1|WP_064832697.1|54757_54961_+|hypothetical-protein
MTDDKARKAAIRQHFLARHEARKAAMFAEWQDNIREAIEASPIETRMRIEDGIAFLRAGGERKSRAH
>NZ_CP013575.1|WP_064832698.1|54975_55665_+|hypothetical-protein
MSNILQFPTFPKPPEDTFQAAEIVRVLEAMEYPPAREQLAELHEKMNAPEFFHAFGEIAAQRVDLDYQSRERWEGDTDEPPFWSEQYREASDEIAQAFELIRRAKKRLWFTLSYAFETQKAINPGWMYAHIGKAHKAILFQTFDNKDGNHFVSVARDYDGRYMEHSDADMALIGFVLRDAGFRRYDCDGGNGPQWFIPGEITDAMKTTIGEELEPFDFLAISWEDVTRY
>NZ_CP013575.1|WP_064832699.1|55674_55872_+|hypothetical-protein
MRYFDALEATVTAAEAITECQRHDIKACVRGSDGALIEEETGDVIALPIDEGDYSGEDVIGFLGY
>NZ_CP013575.1|WP_064832700.1|55873_56743_+|metallophosphoesterase
MDTVKAAVFSDLHLSYNGQLHYPFDLPDDVEIAIVAGDVSAPVSISLQWLHNVVSGRGRRDVVFVAGNHEHYGQVYEKSMSQGMEDRAKFPHIHFLENEAAVIKGVRFLGATMWTDFNLFGYPAAAMEQAAAFMNDYSAIRSRAADGNYRRFTPEITRAIHQESREWLRQALAESFHGPTVVVTHTSPHIMSVSEEYADDPLTPAFASDFGPEIAEFEPEFWIHGHTHTGFDYIVPGSRTRVVCNPLGYRKSAARVSTMFENLVFDPYKTIEIPLAWRPLPGYVSHMRR
>NZ_CP013575.1|WP_081278363.1|56769_57168_+|helix-turn-helix-transcriptional-regulator
MTDSKVRMTRGSNVVHRQVEHVMAKIGADISLARRVRRMATDDFAKRIGVSRATLHRLEAGDPGISMNTFIMALHALGRLDALAAIVDPARDHVTLTQMMADVPKRIAKPRATTAAAPSDDALKSGTKYKGF
>NZ_CP013575.1|WP_064832701.1|57168_57681_+|hypothetical-protein
MTTFDEIKSSSPDMFPESVHVECREGWAGIVASFLLDARMVCIANATDLRVLAVRQDLGALRIDAEYESADKWLFSRFLLLAEFRSRVTCEECGRPGHMRTTGGWKRCRCDEHSTPEEREQPPRPAWTLGRETSKGFLWYDQAIDDVRIVDDLASIGMPAHHIERRKDGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013575_1	1.1\|51350\|53\|NZ_CP013575\|CRISPRCasFinder	51350-51402	53	NZ_CP013569	Rhizobium phaseoli strain N771 plasmid pRphaN771a, complete sequence	51350-51402	0	1.0
NZ_CP013575_1	1.1\|51350\|53\|NZ_CP013575\|CRISPRCasFinder	51350-51402	53	NZ_CP013558	Rhizobium phaseoli strain N841 plasmid pRphaN841a, complete sequence	37750-37802	3	0.943

1. spacer 1.1|51350|53|NZ_CP013575|CRISPRCasFinder matches to NZ_CP013569 (Rhizobium phaseoli strain N771 plasmid pRphaN771a, complete sequence) position: , mismatch: 0, identity: 1.0

gctgcccccaagcaggccgacggccagacggatgccaaaagcgacgccccgag	CRISPR spacer
gctgcccccaagcaggccgacggccagacggatgccaaaagcgacgccccgag	Protospacer
*****************************************************

2. spacer 1.1|51350|53|NZ_CP013575|CRISPRCasFinder matches to NZ_CP013558 (Rhizobium phaseoli strain N841 plasmid pRphaN841a, complete sequence) position: , mismatch: 3, identity: 0.943

gctgcccccaagcaggccgacggccagacggatgccaaaagcgacgccccgag	CRISPR spacer
gctgcccccaagcaggtcgacggccagacggaagccaaaagcgacgccccgac	Protospacer
****************.*************** *******************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013574

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013575

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection