CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP006976	Pasteurella multocida subsp. multocida HB01 chromosome, complete genome	3 crisprs	cas14j,DEDDh,cas3,cas8f,cas5f,cas7f,cas6f,cas1,cas3-cas2,DinG,csa3	1	20	4	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006976_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006976_1

336325-337253

TypeI-F

Consensus_repeat	Method
GTTCACCATCGTGTAGATGGCTTAGAAA	PILER-CR
GTTCACCATCGTGTAGATGGCTTAGAAA	CRISPRCasFinder
GTTCACCATCGTGTAGATGGCTTAGAAA	CRT

15 spacers

cas6f,cas7f,cas5f,cas8f,cas1,cas3-cas2

The CRISPR arrays of NZ_CP006976_1

>merge|NZ_CP006976|1|336325-337253|PILER-CR,CRISPRCasFinder,CRT
GTTCACCATCGTGTAGATGGCTTAGAAAATTCGTGACAAAAGACGAATATAAGAAAAGAAGTTCACCATCGTGTAGATGGCTTAGAAAGTCGTTGAAACGGCACCATGGGCGTTTGCATTTGTTCACCATCGTGTAGATGGCTTAGAAAGAAACACTAGAAGATTTAACGGTCATTGAAAAGTTCACCATCGTGTAGATGGCTTAGAAAATTCGATTTCCAGTGCCGAAAATCCATGCCCTGTTCACCATCGTGTAGATGGCTTAGAAAATAATGACGTGTTCAACTAACGGCTGACAATCGTTCACCATCGTGTAGATGGCTTAGAAACACAACATGTGCTGAAAGTGCGTGAGATTTGAGTTCACCATCGTGTAGATGGCTTAGAAATACCCGATGTTAGAGGCAATCAAAGTGGAGCTGTTCACCATCGTGTAGATGGCTTAGAAAAAAGTCTCATTTAACACCGCGCGACGCTGGAAGTTCACCATCGTGTAGATGGCTTAGAAAAAGCCCACCTTGCGCTTGAACAGATGAATTAAGTTCACCATCGTGTAGATGGCTTAGAAATTTAAGCTACGTTTATCCGCAAGATTCACTACGTTCACCATCGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATTGTGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCGTGTAGATGGCTTAGAAAAGTTAAAGCTAAGAAACTAACGGATATTGCGAGTTCACCATCGTGTAGATGGCTTAAAAA

>NZ_CP006976|1|1|336325-337253|PILER-CR
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGTGACAAAAGACGAATATAAGAAAAGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	GTCGTTGAAACGGCACCATGGGCGTTTGCATTT
GTTCACCATCGTGTAGATGGCTTAGAAA	GAAACACTAGAAGATTTAACGGTCATTGAAAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGATTTCCAGTGCCGAAAATCCATGCCCT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA	AAAGTCTCATTTAACACCGCGCGACGCTGGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	AAGCCCACCTTGCGCTTGAACAGATGAATTAA
GTTCACCATCGTGTAGATGGCTTAGAAA	TTTAAGCTACGTTTATCCGCAAGATTCACTAC
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATTGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	AGTTAAAGCTAAGAAACTAACGGATATTGCGA
GTTCACCATCGTGTAGATGGCTTAAAAA

>NZ_CP006976|1|1|336325-337253|CRISPRCasFinder
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGTGACAAAAGACGAATATAAGAAAAGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	GTCGTTGAAACGGCACCATGGGCGTTTGCATTT
GTTCACCATCGTGTAGATGGCTTAGAAA	GAAACACTAGAAGATTTAACGGTCATTGAAAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGATTTCCAGTGCCGAAAATCCATGCCCT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA	AAAGTCTCATTTAACACCGCGCGACGCTGGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	AAGCCCACCTTGCGCTTGAACAGATGAATTAA
GTTCACCATCGTGTAGATGGCTTAGAAA	TTTAAGCTACGTTTATCCGCAAGATTCACTAC
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATTGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	AGTTAAAGCTAAGAAACTAACGGATATTGCGA
GTTCACCATCGTGTAGATGGCTTAAAAA

>NZ_CP006976|1|1|336325-337253|CRT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGTGACAAAAGACGAATATAAGAAAAGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	GTCGTTGAAACGGCACCATGGGCGTTTGCATTT
GTTCACCATCGTGTAGATGGCTTAGAAA	GAAACACTAGAAGATTTAACGGTCATTGAAAA
GTTCACCATCGTGTAGATGGCTTAGAAA	ATTCGATTTCCAGTGCCGAAAATCCATGCCCT
GTTCACCATCGTGTAGATGGCTTAGAAA	ATAATGACGTGTTCAACTAACGGCTGACAATC
GTTCACCATCGTGTAGATGGCTTAGAAA	CACAACATGTGCTGAAAGTGCGTGAGATTTGA
GTTCACCATCGTGTAGATGGCTTAGAAA	TACCCGATGTTAGAGGCAATCAAAGTGGAGCT
GTTCACCATCGTGTAGATGGCTTAGAAA	AAAGTCTCATTTAACACCGCGCGACGCTGGAA
GTTCACCATCGTGTAGATGGCTTAGAAA	AAGCCCACCTTGCGCTTGAACAGATGAATTAA
GTTCACCATCGTGTAGATGGCTTAGAAA	TTTAAGCTACGTTTATCCGCAAGATTCACTAC
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATTGTGTAGATGGCTTAGAAA	GTTGGTGCGAATTTCACATCTAAGCTTGAAAT
GTTCACCATCGTGTAGATGGCTTAGAAA	AGTTAAAGCTAAGAAACTAACGGATATTGCGA
GTTCACCATCGTGTAGATGGCTTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006976.1\|WP_014325850.1\|345429_346146_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	unknown	unknown	gnl\|CDD\|223639
NZ_CP006976.1\|WP_014325840.1\|322939_325843_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP006976.1\|WP_005721377.1\|348182_348569_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NZ_CP006976.1\|WP_005753654.1\|334613_335621_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP006976.1\|WP_014325848.1\|338383_341704_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|187804
NZ_CP006976.1\|WP_005721273.1\|326009_326279_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP006976.1\|WP_016504384.1\|333627_334611_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|274204
NZ_CP006976.1\|WP_005725867.1\|343758_344349_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006976.1\|WP_014325841.1\|326417_327530_-\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|183270
NZ_CP006976.1\|WP_005721326.1\|346224_346689_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927
NZ_CP006976.1\|WP_014325849.1\|344412_345216_-\|inositol-1-monophosphatase	unknown	unknown	gnl\|CDD\|236753
NZ_CP006976.1\|WP_005753659.1\|337422_338403_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849
NZ_CP006976.1\|WP_016504385.1\|332283_333618_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
NZ_CP006976.1\|WP_005721328.1\|346736_347951_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NZ_CP006976.1\|WP_014325842.1\|327711_329760_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655
NZ_CP006976.1\|WP_005753664.1\|341761_343618_+\|response-regulator	unknown	unknown	gnl\|CDD\|236842
NZ_CP006976.1\|WP_005721379.1\|348638_348962_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|213674
NZ_CP006976.1\|WP_005751227.1\|322382_322898_+\|heme-utilization-protein-HutZ	unknown	unknown	gnl\|CDD\|200361
NZ_CP006976.1\|WP_014325847.1\|335623_336184_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|274202
NZ_CP006976.1\|WP_014325843.1\|329893_332053_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl\|CDD\|236981

Protein	Function_ID	Function_description	E-value
NZ_CP006976.1\|WP_014325850.1\|345429_346146_+\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	3.89077e-117
NZ_CP006976.1\|WP_014325840.1\|322939_325843_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.24483e-109
NZ_CP006976.1\|WP_005721377.1\|348182_348569_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	1.51567e-94
NZ_CP006976.1\|WP_005753654.1\|334613_335621_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP006976.1\|WP_014325848.1\|338383_341704_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP006976.1\|WP_005721273.1\|326009_326279_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.85836e-50
NZ_CP006976.1\|WP_016504384.1\|333627_334611_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|274204	TIGR02565, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	5.3086e-151
NZ_CP006976.1\|WP_014325841.1\|326417_327530_-\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|183270	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC.	0
NZ_CP006976.1\|WP_005721326.1\|346224_346689_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	5.78928e-83
NZ_CP006976.1\|WP_014325849.1\|344412_345216_-\|inositol-1-monophosphatase	gnl\|CDD\|236753	PRK10757, PRK10757, inositol-1-monophosphatase.	9.50997e-153
NZ_CP006976.1\|WP_005753659.1\|337422_338403_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	0
NZ_CP006976.1\|WP_016504385.1\|332283_333618_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	5.29485e-151
NZ_CP006976.1\|WP_005721328.1\|346736_347951_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NZ_CP006976.1\|WP_014325842.1\|327711_329760_+\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP006976.1\|WP_005753664.1\|341761_343618_+\|response-regulator	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NZ_CP006976.1\|WP_005721379.1\|348638_348962_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	6.36459e-65
NZ_CP006976.1\|WP_005751227.1\|322382_322898_+\|heme-utilization-protein-HutZ	gnl\|CDD\|200361	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ. Members of this family are heme utilization proteins, typically designated HutZ. They are members of the PPOX family (pfam01243) and, except for the lack of an N-terminal extension, are closely related to one form of heme oxidase (1.14.99.3), HugZ (TIGR04109). Members typically are found in a three-gene operon with radical SAM enzyme HutW and a protein of unknown function, HutX.	2.01653e-97
NZ_CP006976.1\|WP_014325847.1\|335623_336184_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|274202	TIGR02563, conserved_hypothetical_protein, CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.09974e-90
NZ_CP006976.1\|WP_014325843.1\|329893_332053_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0

>NZ_CP006976.1|WP_014325847.1|335623_336184_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MTTHYIELKAIPQMDMLQSEVIGHCMQILHQFLPHFEGRVGVAFPAYGLGRTLGGIVRLFANQEDCNQLHQQLLRSGLSDYALISEVSKTPLSTECRSYSRVHRKGQSAIRRTEKRLKSQGRWDESIRADMQQRQQNVAFFPHCHLKSASTGQRFILAVKENRMPQSCVGVFNAYGLSNSATVPHF
>NZ_CP006976.1|WP_005753654.1|334613_335621_+|type-I-F-CRISPR-associated-protein-Csy3
MSKLSTPSVLAFERNLDISDAIFAQKDSKNDKDAPVPLRIREKSVRGTISNRLKNTITNDPAKLDAETEKANLQRVDVATLDDDKDTLVATFSVKVLPFTGRPNVCNDQDYQHQVMTTVAQYLSEQGMDELAKRYATNIANARWLWRNRMGAEKIKIEVTCGENTIHFDDAKQFSLNHFDHQDDKIHQIAKEIKQGLLGEKFVILYVTAYANMGYGQEVYPSQELVLDNSTNNRKSKILYEINQKAGMHSQKVGNAIRTIDTWYAEEVAFPIAAEPYGAVTTLGTAFRQPKTKKNDFYTLFDNWLLKGEVPPVEQQHYVMSVLIRGGVFGASGKE
>NZ_CP006976.1|WP_016504384.1|333627_334611_+|type-I-F-CRISPR-associated-protein-Csy2
MFQTDFYILFDHIKVQSANAISGPLSYGFPALTGLTGAMHALNRKLTHHPVQFGGVMVACHDYELQTYQNSAFSDRTFKQTRNPIKRNGETASIIEEGKIHLDLSLVVEVHVQDDRVFEALTDKTSQASQDFLQTCKNLLWQQRIAGGSVLEIGNVQLFNLEEDQDIPLALMPAFVLMDAKQELTNITEELKTGLRIGQLDEEGNVQKSCLPSCPDATALDALLEMATVHHIPEHANATASAWQTYSVKKGRGWLVPLPVGYQAISPLFAPGQLQHCRTQQYPSQYVETLYSLGKWVFPLSLPENLSQCFWRYTALQNNLYLISQGE
>NZ_CP006976.1|WP_016504385.1|332283_333618_+|type-I-F-CRISPR-associated-protein-Csy1
MSHTFRKRIDLFLQEQNLKKSESDRKKLAKATDPTEIEQLTQLIQEFDQKYQFDTWIANAANVMAKQLKFGTHIAKGIHPDTKGDNVNFQPSDSLPPEYVGSQSVSHLVLDANGNAAALPLASFFNFIVDEEKQVKLRDLLLADDPRLAGCFSDDLALSDVYKKQFQQALTGDLTQPETHERNKQVFWANGENPIEDDDYTCLIPLYPSSLTHAFYQKVNNNRYSEQNKQARENRQKKTVEQTHYLSINQLATVVLGGSKPQNISQLMSAQGGRNYLLPSLPPIIPSSRYFRLSPLQTTIFNDRLAYACRYGLRQLFEVVEARKNVYQVRDSRIDALNNILRTFLFHANLLQKQPAGWSKDSQLEMCEKYWLDPKRVHLPDEEAFRAEYEKGEWVAEVERRFALWLNKRLQKRFPHIAKDFDDVEYHEWRRNIRRTLRYRLRHP
>NZ_CP006976.1|WP_014325843.1|329893_332053_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MKQLFATTARGFEELLKVELTDLGAMDCQITQGGVHFHADEETQYRVLLWTRLASRILLPIVTCKVYSDLDLYSAVVGQNWLDYFDEKAHFMVDFNGTNREIRHTQFGAMRVKDGIVDYFERVGKPRPNVDKSQPDIRIHAYLNREELVISLDLSGDALHMRGYREDTGKAPLRETLAAAIVLRSGWQLGTPLVDPMCGSGTLLIEAAQMQANIAPQLHRLHWGFDFWKGHNQQAWDKVKGEAIELAEQTFNQNQKANFYGCDLDHRVLQKAKRNAQNAGVAHLIQWRQGDVAALKNPFVEAKGTVICNPPYGERLGTTPALIALYSVFGQRLKQQFADWNVSIFSGEPALLDCLRLRSHRQFKAKNGPLDCVQKNYHISARATASDENTQNLPEIDRTLSATQVAVDFANRLQKNSKKIEKWARQQGINAYRLYDADLPEYNLAVDRYDDHIVVQEYAAPKNIDENKARQRLLDAVTATLQVTGVETNKLILKVRQKQKGTNQYEKLANKGDYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMLGKMAKGKDVLNLFAYTGSATVHMALGGAKSTTTVDMSNTYLNWAEQNLLLNDLEGKQHKLIQADCLQWLARCDRQFDLIFVDPPTFSNSKRMEDSWDVQRDHIKLMTQLKRILRPNGTIVFSNNKRGFKMDVEGLETLGLSAVDITAKTLPLDFERNKQIHNCWVVRLKADL
>NZ_CP006976.1|WP_014325842.1|327711_329760_+|methionine--tRNA-ligase
MANSARDILVTCALPYANGAIHLGHLLEHIQADIWVRFQRMRGHKVHFICADDAHGTPIMLNADKLGITPEALIARSKADHVADFEGFNISYDNYHSTHSPENEALTAEMYKKLRANGFIKSRTISQLFDPEKGMFLPDRFVKGTCPKCKAEDQYGDNCEVCSSTYSPTELINPRSVVSGATPVLKESEHFFFDLPAFEGMLKAWIKSGSLQPEIANKMQEWFESGLQQWDISRDAPYFGFKIPDTEDKYFYVWLDAPIGYMASFKNLCDKTGLNFDDFWKKDSSAELYHFIGKDIVYFHSLFWPAMLDGCDLRKPTNVFAHGYVTVNGVKMSKSRGTFIQASTYLRHLAPEYLRYYYAAKLNNRIEDLDLNLEDFVQRLNADVVNKFVNLASRSAGFITKRFDGKLSAEIAEPELLAEFVEKAAQIATYYEEREFGKVVREVMQLADKANKYIDDKAPWVMAKEEGREAELQAVCSMALQLFRVLAIYLKPVIPQIIARAEAFLQDELTWESLNRPLLNHAILPFKALAQRLDLKQIEAIVNETKEQFVAQQALEQKNSAKAEPASQVEPIAETISIEDFAKLDLRVAKVMKCEAVPESNKLLRFELDLGDHTRQVFSGIKEAYNNPAELEGRFVVVIANLAPRKMRFGVSEGMILSAGTGGDDLFLLNADQGVKPGMQVK
>NZ_CP006976.1|WP_014325841.1|326417_327530_-|iron-sulfur-cluster-carrier-protein-ApbC
MGILFSDSLTDSQKQAIQNTFQQFQHPSLQKDLVSLNAIKKIEKGGETLRIEISMPFAWNTAFEQLKSALSTELLTLAECKDIKWQLNYQIATLKRANSHPAVKGVKNIIAVTSGKGGVGKSTISVNLALALQRQGARVGILDADIYGPSIPHMLGVADQRPTSPDNQHITPIQAHHIFANSIGFLMEPDNATIWRGPMASSALSQLLQETLWPDLDYLVIDMPPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGVAMFERVSVPVLGIIENMSMHICSNCGHQETIFGTGGAERIAQKYNVKVLGQQALHIRLREDLDKGIPTVVAAPESDIAQSFMQLAEKVATELYWQGSVIPSEIMFKEVK
>NZ_CP006976.1|WP_005721273.1|326009_326279_+|30S-ribosomal-protein-S15
MSLSTEKKAAIVAEFGRDAKDTGSSEVQIALLTAQINHLQSHFATHKKDHHGRRGLLRMVSRRRKLLDYLKRTNLELYTSTIARLGLRR
>NZ_CP006976.1|WP_014325840.1|322939_325843_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MRTTTIKFSAITLALLSYCGTILADSHQEATELDTITVSSQQDEMNIKEKKIGETVKTASQLKRQQVQDSRDLVRYETGVTVVEAGRFGSSGYAIRGVDENRVAITVDGLHQAETLSSQGFKELFEGYGNFNNTRNSVEIETLKVAKIAKGADSVKVGSGSLGGAVLFETKDARDFLTEKDWHIGYKAGYSTADNQGLNAVTLAGRYQMFDALIMHSKRHGHELENYDYKNGRDIQGKEREKADPYTITKESTLVKFSFSPTENHRFTVASDTYLQHSRGHDLSYNLVATTHIQLDEKESRHANDLTKRKNVSFTYENYTVTPFWDTLKLSYSQQRITTRARTEDYCDGNELCDSYKNPLGLQFKDGQILDPAGNKIKLQGSGLSTQIVDENGKPFPTTTGTNNAAFSNNLRLRPTGFWLDCSVFDCNKPFTVYNISNGTYQAREVLLSEEITVDGKLYKTAKEEGGLPNYLILPNSKGYLPYDYKERDLNTNTKQINLDLTKTFLTFNIENNLSYGGVYSRIEKEMINKAGYEGRNPTWWADRILGQSSYCGYNALKCPKHEPLTSFLIPVEATTQSLYFANILKVHNMISIDLGYRYDHIKYNPEYTPGVTPKIPDDMVKGLFIPMPKEPQLKDFDYNYAKFGEAYKKWKEYLPKNAEENIAYIAQDKTFKKHSYSLGATFDPLNFLRVQVKYSKGFRAPTSDELYFTFKHPDFTILPNPVLKPEEAKNQEIALTVHDNWGFVSTSVFQTKYRHFIDLAYLGSRNLSNSVGGQAQARDFQVYQNVNVDNAKVKGLEINARLNLGYFWHVLDGFNTSYKFTYQRGRLDGDRPMNAIQPKASVFGLGYDHKENKFGADLYITRVSEKKAKDTYNMFYKEQGYKDSAVRWRSDDYTLVDAVGYIKPIKNLTLQFGVYNLTDRKYLTWESARSIKPFGTSNLINQKTGAGINRFYSPGRNFKLSAEITF
>NZ_CP006976.1|WP_005751227.1|322382_322898_+|heme-utilization-protein-HutZ
MTTNRQEVLQNRLGPEIQELKAQCKTVMLATVGEDGNPNVSYAPFAINNGEYQVFISTIARHARNLQEVPKVSLMLIEDESQSRQIFARRRLSFDAVARVVERESEEWHSGVEALKARHGALMDELSRMKDFHLFSFKPSQGLFVKGFGQAFQVSNDDLVSFVHLVEGHQE
>NZ_CP006976.1|WP_005753659.1|337422_338403_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MRKTPYIPSSDLKTIMHSKRANIYYLEHCRVLLNGGRVEYVTDEGRESLYWNIPIANTSCLLLGSGTSITQAAMRELSKAGVMVGFCSGGGTPLFNGTEAEIGCEFFSPQSEYRPVMYLQQWCKFWFDDEKRLAVAKALQQQRLALLEPIWSKLEWVYSCEKLTALVTQYQHEFAQAAHSQALLAAEGRLTTKLYALANQATMNEPDFKRSERGKSIDLVNQFLDHGNYLAYGLGATACWVLGLPHGLAVLHGKTRRGGLVFDAADIIKDSMILPQAFISAQNGDSEKEFRQACIQNLLRFGALDIIIERLQQLALQGASDEYFAG
>NZ_CP006976.1|WP_014325848.1|338383_341704_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLVSQCQKNALTETRRILDQFAERCGDRVWQTAITQAGLETLYKMLRQTARKNTAVACYWTHRKNSAELLWIVGDRRQFNDQGRVPTNRTQRNILRAEEEIAWQDAYSLQILTALSALLHDVGKSSVGFQTKLDKTKNAPRVADSYRHEWISVRLFEAMIEGCQTDQAWLERLANWQVFEETNPTWFSKIIQDRPNENHFSDFAYLPPLARRVIWLITSHHRLPFTHDISRSQDCIKNLRKYAKLTFESLFKAYKPAVGWVSNGAEHPTPQAFWQFQRVATQSQAWQKHMARWAKKALNHPALFSVSENADPFLLLLARLCLMTGDHYYSAQDQNEKLGELNFPLLANTYRENHQPKQRLDEHLIGVCQTAVRFARLLPKFPRELPRIKQHKPFVQLAKDRFAWQNKAVNVARLLQKTSESQGFFGVNMASTGCGKTLANAKMMYALNDSKQGARFTIALGLRVLTLQTGSALKKRLHLSDQDLAVLVGGSAVKKLYALQQEKQNQLAQQGSESAEDWLEDMQVEGATYIESAVENEAVLSFLSKDDKTKKLLYAPIVSCTLDHLISASESVRGGHHIVPILRLLTSDLILDEPDDFAQEDLPALSRLVYLAGLFGSRVLLSSATLTPDFITGLFKAYQAGRKIYNQQKGIVAALPICCAWVDEFQQVQANCGQDEQFIQQHDEFVRKRAENLAKSPVRRQAEILSLPSLKPREGEDLHYGLLADTLLQKAMALHDLHGQTDPHSQKKVSVGLIRFSNIEPMIPLAKALFALQASEKFADYQVHLCCYHSRQLLLLRSYLEEKLDKILDRHTPEQLFQHEEIALPMSQYKAKNHLFIVLGSPVTEVGRDHDYDWAIVDPSSMRSIIQLAGRVWRHRAEKVAEQPNIALLPINWRGLKVRYQQKDVIYHRPGFESHQHKLATHKLDQLISQRDLAHIQATPRIVKPEVLQASTQLADLEHHAIASLLNHPSENLVNLYWDPRYCNYLLANLPLMSEFRKSMAELEVVCVPDEDSHWGFGFYRAQKRDEETLSALPEIQYEPIQQDKHAVVQPWLAAALDTVLSDLAEQLNVVSPEWIAPTYLCASLPQYDGKLDWHYNEVYGFW
>NZ_CP006976.1|WP_005753664.1|341761_343618_+|response-regulator
MKNIKYFTQKYVDWVIRLGRLRFSILGVIVLAILALCTQALLSLFIIGEVYWVDMIRSVVFGLISAPFVIYFFTVLVEKLERSRLGLAKMVENLRKEVSERVLAEKKLSIALDNIEKTSRDKTRLMATISHELRTPLNGIIGLSRILLDEKLTETQQNYLKTIHVSAISLGHIFSDIIDLEKIDARRIELNAKAVELNSFLNDISNVARLLAQQKKLAFQLVTDKNLPTWFMVDYARLSQILWNLIGNAVKFTQEGRITLNVKRVSEYQISFSVSDTGIGIPANELPRVFEMYYQVQSSGHKPLGSGIGLAISQTIAQLMGGDLYATSEMGKGSCFTLMLPVKEVEKPVRVQNQMPSTLNILLVEDIEVNVVVAKSVLEKLGYVVDVAMTGQQAIEKFEQQYYDLLLLDIQLPDMSGFAVAKYLREGYENGQYDFLPPLIALTANVMHDKKEYQAQGMDDVLRKPLSIEELTACLVEYFGHDVSLCLETPTTHQITQDATHFDVKMLSELVEMLGTDFVLKNLALFKETMPEYMQALMTAYSVYQQDESQKADVLSCAHKIKGAAASVGLKRIQQIAAQAQDPEQGEWTENIHDWVQQLAQYWLLDVEALERYLNKSV
>NZ_CP006976.1|WP_005725867.1|343758_344349_+|hypothetical-protein
MKIFAVLSAFLMPFVVPNTTVNGYKDLRFGMTIEQAKETKLCEDQWHLPADDDWRRVVRGYWVCDKFRFDDGYAVARLRFIGGQLKSIELKMPEYPKYPAELLLHVLEEKYGKTIEVEQRDLIEEDILQGKIRKRRKNESALLDTYQFAKGTVSLTLLTYNGIPQPAEIIYSAPELLLLEKKLEDRPQRRTLLRDL
>NZ_CP006976.1|WP_014325849.1|344412_345216_-|inositol-1-monophosphatase
MNPMLNIAIRAARKAGNVIAKGYERRDALQTTLKSTNDYVTNIDKASEEAIIEVIRKSYPDHTIITEESGALEGKDSDIQWVIDPLDGTTNFVKGLPHFSVSIAIRVKGRTEVGVVYDPIRNELFTAVRGEGAKINDMRLRVENKRDLAGTVLTTGFPFKQTRLMPMQFAMMNNLIQDCADFRRMGSAALDLCYVAAGRVDGYFEVGVKAWDIAAGDLIVREAGGLVCDFNGGHSYLTSGHLVAAAPRIVKEILNKIQPCLSDEFKK
>NZ_CP006976.1|WP_014325850.1|345429_346146_+|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ
MLENIRIVLVETSHSGNIGSAARAMKTMGLNQLYLVAPKQPLDEHAIALSAGAEDVLKQAKIVASFDEAVADCALVIGTSARLRHLQNSLIEPRECGTHAIVYAKQAPVAIVFGRERIGLTNEELLKCRYHLTIPANPDYSSLNLAMAVQLICYELRLAFLSQQAMTESLSTIDNTYPTHTEIEHFFQHTERLYTALGFIQNQGVMPKLRRLYQRVQLEKNELNILRGMLTAVEKRLK
>NZ_CP006976.1|WP_005721326.1|346224_346689_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MKLTSKGRYAVTAILDIALNSNRGPVSLSDISERQHISLSYLEQLFAKLRRHGLVKSVRGPGGGYQLGLPANRISVGMVINAVNENIDVTRCLGRGDCQEGTECLTHSLWKELSLRIEAFLNEITLEELVEKNRQKRATIEFRGDFDNLIILDN
>NZ_CP006976.1|WP_005721328.1|346736_347951_+|IscS-subfamily-cysteine-desulfurase
MKLPIYLDYAATCPVDERVAKKMMEYLTVEGNFGNPASRSHKFGWQAEEAVDVARNHIADLIGADSREIVFTSGATESDNLAIKGAAHFYQSKGKHIITCKTEHKAVLDTCRQLEREGFEVTYLNPKSDGLIDLEELKNAMRDDTILVSIMHVNNEIGVIQDIAAIGELCRARKILFHVDATQSVGKLPINLAELKVDLMSMSSHKLYGPKGIGALYVSRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRICKEEMASEMPRLKALRDRLYNGLKDIEETYVNGSMEHRLDSNLNISFNYVEGESLMMALRDIAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFTLGRYTTEEEIDYTIELVKNAVAKLRELSPLWDMFKEGIDLNTIEWTHH
>NZ_CP006976.1|WP_005721377.1|348182_348569_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSNKVIDHYENPRNVGSLDKKDANVGTGMVGAPACGDVMQLQIKVSEEGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLDEAQAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKKEAK
>NZ_CP006976.1|WP_005721379.1|348638_348962_+|iron-sulfur-cluster-assembly-protein-IscA
MGISLTETAADRVRTFLANRGKGIGLRLGIKTSGCSGLAYVLEFVDELNPEDQVFEQHGVKIIVDAKSLVYLDGTELDFAKEGLNEGFKFNNPNVKDQCGCGESFHV

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Crispr_ID: NZ_CP006976_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006976_2

1258211-1258353

Orphan

Consensus_repeat	Method
CCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCATTCCGCCAA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP006976_2

>merge|NZ_CP006976|2|1258211-1258353|CRISPRCasFinder
CCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCATTCCGCCAATTTTATTCTACTACGGAGCGGTAGTTCAGCTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCGTTCCGCCAA

>NZ_CP006976|2|2|1258211-1258353|CRISPRCasFinder
CCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCATTCCGCCAA	TTTTATTCTACTACGGAGCGGTAGTTCAGCTGGTTAGAATA
CCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCGTTCCGCCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006976.1\|WP_014326282.1\|1252755_1254027_+\|SIR2-family-protein	unknown	unknown	gnl\|CDD\|379106
NZ_CP006976.1\|WP_014326278.1\|1248454_1249552_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006976.1\|WP_014326281.1\|1252051_1252612_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006976.1\|WP_014326286.1\|1257327_1258089_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
NZ_CP006976.1\|WP_016504397.1\|1267049_1267793_-\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|224790
NZ_CP006976.1\|WP_014326287.1\|1258537_1260070_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NZ_CP006976.1\|WP_014326292.1\|1265817_1266984_+\|opacity-associated-protein-OapA	unknown	unknown	gnl\|CDD\|225603
NZ_CP006976.1\|WP_005722594.1\|1261994_1262720_-\|1-acylglycerol-3-phosphate-O-acyltransferase	unknown	unknown	gnl\|CDD\|184979
NZ_CP006976.1\|WP_005753379.1\|1263553_1264060_+\|DUF2301-domain-containing-membrane-protein	unknown	unknown	gnl\|CDD\|227700
NZ_CP006976.1\|WP_014326288.1\|1260133_1260523_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006976.1\|WP_014326277.1\|1247449_1248151_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143497
NZ_CP006976.1\|WP_016504218.1\|1249533_1249977_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006976.1\|WP_014326283.1\|1254023_1255766_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223510
NZ_CP006976.1\|WP_014326280.1\|1249976_1251983_+\|DUF3732-domain-containing-protein	unknown	unknown	gnl\|CDD\|372169
NZ_CP006976.1\|WP_014326291.1\|1264710_1265724_+\|EF-P-beta-lysylation-protein-EpmB	unknown	unknown	gnl\|CDD\|163533
NZ_CP006976.1\|WP_005719907.1\|1264108_1264675_-\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NZ_CP006976.1\|WP_014326285.1\|1256794_1257259_-\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NZ_CP006976.1\|WP_014326290.1\|1262830_1263550_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP006976.1\|WP_014326284.1\|1255891_1256731_+\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|224714
NZ_CP006976.1\|WP_014326289.1\|1260584_1261991_-\|multicopper-oxidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|182808

Protein	Function_ID	Function_description	E-value
NZ_CP006976.1\|WP_014326282.1\|1252755_1254027_+\|SIR2-family-protein	gnl\|CDD\|379106	pfam13289, SIR2_2, SIR2-like domain. This family of proteins are related to the sirtuins.	2.69081e-07
NZ_CP006976.1\|WP_014326291.1\|1264710_1265724_+\|EF-P-beta-lysylation-protein-EpmB	gnl\|CDD\|163533	TIGR03821, EFP_modif_epmB, EF-P beta-lysylation protein EpmB. Members of this radical SAM protein subfamily, including yjeK in E. coli, form a distinctive clade, homologous to lysine-2,3-aminomutase of Bacillus, Clostridium, and methanogenic archaea. Members of this family are found in E. coli, Buchnera, Yersinia, etc. The gene symbol is now reassigned as EpmB (Elongation factor P Modification B). [Protein fate, Protein modification and repair].	0
NZ_CP006976.1\|WP_005719907.1\|1264108_1264675_-\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	4.82145e-109
NZ_CP006976.1\|WP_014326286.1\|1257327_1258089_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	5.36222e-159
NZ_CP006976.1\|WP_016504397.1\|1267049_1267793_-\|cyclase-family-protein	gnl\|CDD\|224790	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism].	4.20526e-76
NZ_CP006976.1\|WP_014326287.1\|1258537_1260070_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NZ_CP006976.1\|WP_014326292.1\|1265817_1266984_+\|opacity-associated-protein-OapA	gnl\|CDD\|225603	COG3061, OapA, Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane].	3.60353e-63
NZ_CP006976.1\|WP_005722594.1\|1261994_1262720_-\|1-acylglycerol-3-phosphate-O-acyltransferase	gnl\|CDD\|184979	PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional.	6.28069e-117
NZ_CP006976.1\|WP_005753379.1\|1263553_1264060_+\|DUF2301-domain-containing-membrane-protein	gnl\|CDD\|227700	COG5413, COG5413, Uncharacterized integral membrane protein [Function unknown].	2.97061e-81
NZ_CP006976.1\|WP_014326277.1\|1247449_1248151_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	3.20262e-134
NZ_CP006976.1\|WP_014326283.1\|1254023_1255766_+\|ATP-binding-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	1.14016e-25
NZ_CP006976.1\|WP_014326280.1\|1249976_1251983_+\|DUF3732-domain-containing-protein	gnl\|CDD\|372169	pfam12532, DUF3732, Protein of unknown function (DUF3732). This domain family is found in bacteria and eukaryotes, and is typically between 180 and 198 amino acids in length. There is a conserved DQP sequence motif.	3.86877e-60
NZ_CP006976.1\|WP_014326285.1\|1256794_1257259_-\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	2.55542e-104
NZ_CP006976.1\|WP_014326290.1\|1262830_1263550_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	3.97467e-142
NZ_CP006976.1\|WP_014326284.1\|1255891_1256731_+\|DUF72-domain-containing-protein	gnl\|CDD\|224714	COG1801, COG1801, Uncharacterized conserved protein [Function unknown].	1.84124e-70
NZ_CP006976.1\|WP_014326289.1\|1260584_1261991_-\|multicopper-oxidase-domain-containing-protein	gnl\|CDD\|182808	PRK10883, PRK10883, FtsI repressor; Provisional.	2.94775e-152

>NZ_CP006976.1|WP_014326286.1|1257327_1258089_+|DNA-polymerase-III-subunit-epsilon
MTPVNQPTRQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPNRPVDPDAIKVHGITDEMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNINTDEICMVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSLFDENEPEIAVVAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLNKKSKGNCLWEKRLAELKTH
>NZ_CP006976.1|WP_014326285.1|1256794_1257259_-|ribonuclease-HI
MQKQIEIFTDGSCLGNPGPGGIGVLLRYKQHEKQISAGYFLTTNNRMELRAVIEALNTLKEPCSVTLHSDSQYMKNGITKWIFNWKKNNWKASTGKPVKNQDLWIQLDQAIQRHHINWQWVKGHSGHIENEICDQLAKAGAENPTLEDVGYQPE
>NZ_CP006976.1|WP_014326284.1|1255891_1256731_+|DUF72-domain-containing-protein
MHTPHIYLGTGGYSDTDLIGTLYPFGTDKSEFLAVYSQHYDAIEINSTFHAPIGAKSLLGMVEKAQGRLQFSVKLHQDFSHKRTATKEDARAFLAALQPLKDQDCLANLFIQFPINFERTPANRYYLAELVSWFQEEVLAIEFRHPSWHNQSVLDYFRGKEKLIWCNVDYPQNIGLPAFQFYANQRTAYLRLHGRNPNWWQAQSAQERHDYRYNDTELQNLANLLNQYRNEFDQLYIYFQNTTKSHSFYNIEQLKAYLAEYGFEVKPKPEFLTERQSLF
>NZ_CP006976.1|WP_014326283.1|1254023_1255766_+|ATP-binding-protein
MSNEWFSPYDLKRRIGSLIEISATEAKINLTKAGTGEQVWLLGNRIPIGEVNEFIFIDCGQTSILGRMIRVWLENGERLSVDNLDENYANNNPIGLVQLLVSVDVETGFNHRGIRQYPKLGAQIYSAHPNLVSLLAEGKLASDNNELQLPIAEIPNDSSITIHLTPEKLFARHCAILGSTGGGKSYTMANIINNVKENRGKILLLDATGEYENLLCESYYVGEHPQTKEDDKNKVTYPHWMFTDSDIRALLRPSAGSQAPKLEEAIRSLKIVHYLNRNPEMKTKYALSIQNQVNLEKLEKLKKPFEDIIQSITSPFSDIPWTFHALAEQIIQECVYPTGGTYQTPDPTKWGKRADNDIGYCLNLISRIKAMQNNPHLKWMLDSDPKLTKIPDIIDNLCKNQTDPIIRFDLSFVPFEENAREILVNTIGRKLLDCARKGDISYENPLLVFIDESHQFLNKSIGDDISKMNLTAFGDIAKEGRKYGLNLVMATQRPRDIPEDVLSQIGTLIVHRLTNEKDQEIVKKAVGSIDNRSAAFLPVLGQGEALLLGVDFPFPMKVKIKVPQVAPLSRSASFSKVWSS
>NZ_CP006976.1|WP_014326282.1|1252755_1254027_+|SIR2-family-protein
MQPEQKETEESIKITFLSTDIPNKAPINLSTIKDPDKLQEYKNVLQISLNKILDAENIIVLAGSGTSLTFNTSQNHPAPSMADLWDYCKEKNARVFNEIETYTNYNDFAEKWTDKQGQEHISKDIELLLSRCDTFLSLQNLSTHRLQQLKKFIKDAKLEILKQTNFTGKISDPKNWEHHNKLLRVLGKRQPKQKRLKLFTTNYDLAFETAASNTGMIVIDGFEYGRPYRFNPAWFHYDIVHKTQASDKANSYLPNVFHLYKIHGSVDWLRTEQGIQKRISDSQEGEPVIIYPSSTKYQTSYESPYLDMMSSFLEAVQKPKTAILCLGFGFNDKHINNAITMALRTNPELLLMVSTRSFFDEKGSFNKDIRELLKKAVAAGDSRITLIDCDFATFVEQLPERNKPTPEEQILQFFQKFNTGENK
>NZ_CP006976.1|WP_014326281.1|1252051_1252612_+|hypothetical-protein
MNSELKQDLTEFLRLSLVDDEFIDQYIDDITSLFEEQGEWADEYVYWQEKGILPEDPEHQYYDEYFDWDENAFVVDGKSYPSLSLADILEQQALSKLTDWKFDAEELEYAVNSMLTNKIKIQCPEETYNDALYPYVQQALAPQNYTLCNYWNGNDSCLFMIFSFEEECIREIAGKCNISICAVDEV
>NZ_CP006976.1|WP_014326280.1|1249976_1251983_+|DUF3732-domain-containing-protein
MKTLIHEIGIVDIRDYLHRVKLKEGLNVITGKSSTGKSALIEIFDYCFASSKSNIPKGVITESATLYYLVLQINQLFFVLGREANSSKCFFKIENSNPSDKLGSNYFDNNHFLSLNNYKNKLNEIFIDINDVDESAITVEYRGKKSPTPSIRSFMSLILQHQNLIANKHAIFYRFDEKEKREQVISHMKIFLGFVDQEFYILSQRKEKIEMEIRRIIRENNILSKNLEGKKYELKERLKIFYSVIGVDEKILSIDEVISDPINSKIKLDNTILAQNINHTSDNLNIHYNKLIKERDSEISKLRELQRRKTAIEKTLEDREEFSKNIERSYFPESITIAKTVCPLCYSDNNKLTERAKQLEQAIKILSEDFQFSNGITSELEISLNKTKEEITNKSNIIKKLNREILDIRTKNKELSDKISFNEQVLMKKIEIFFLLDMLSSFKKIDTSEKETYQNELEDIKQKLKLYNIENRVIEANSRINIIMKEIGSKFDFETSYQPINLKFSLDSFDLFHQDNKKGNIYLRTMGSGANWLYCHITLFLALHRYFIELDHKGINCSIPSLLFLDQPTQVYFPNFKFDKSQEFNQNMIKELEHNPETFDEDIKSVENLFKQLAIYCDELKNEFGFSPQIIVTDHADNLNLGNKFNFEDFVNGNRWRTRGLIEPIPNI
>NZ_CP006976.1|WP_016504218.1|1249533_1249977_+|hypothetical-protein
MGLLKMNTINALYFIKYNPFKYAKYIYSFYKSLEPYNNNLLLSPLIIPLCTHPTYSKKKITSRSTLYTIFQDKKELYDLQERVNYFRELTSESIQFCLANDWLYFDSEKLSLYTNEVDIEIEPFPKKLGDLLKDYSVGEIYFNLGVK
>NZ_CP006976.1|WP_014326278.1|1248454_1249552_+|hypothetical-protein
MCGKTKNSALITALAFHYQVLVGLDKCFKLKEGESIFFEKDGDVSLVGQNDSSSLQMEIKNYSDSLTDNHLNFWKTLKNWLQPEFNQAKYGYLILHTTQPFGVSSTLKNWNTIDIEERLELIRKICSKNESSTSEVANIQKEIISSDEQLLRKILGKIYLYTIADNGYELIEKIKRELKGIPDNNLSCYLNALVGYLYGESKSACWEIKYERFKEILIHLTSTYAQKTFTFPNFTGQSASEDEIDKNKTKLFVTKILDIDYEDVLPEAIGNWLEVVNSLMLDLDNSPIYQNMTNDYQRQLISMFKSRFSTASRNKHNPKDLYDKVIGTPPSSMKDQGTPHLAYKNGLLHHAMDDSLQGLKWDCLK
>NZ_CP006976.1|WP_014326277.1|1247449_1248151_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MTIEQNLAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQYFAQKNIPLEWHFIGPLQSNKTKLVAEHFDWMQTLDRKKIADRLNEQRPHYKKPLNVLIQINISDEDSKSGIQPNEMLDLAKQIQNLPHLCLRGLMAIPAPTDDLATQEQAFTQMHSLFEQLKQALPNAKIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARDYSK
>NZ_CP006976.1|WP_014326287.1|1258537_1260070_+|ribosome-biogenesis-GTPase-Der
MTTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQANIAGYDFIVIDTGGIDGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLTSADIGIANYLRQRQNKITVVVANKTDGIDADSHCAEFYQLGLGEVEQIAASQGRGVSALMEQVLAPIAEKMNAESPEQSAVENTDVSETGEQDEWDHDFDFANEEDTALLDDAIAEELEAQDKNIKIAIVGRPNVGKSTLTNRILGEDRVVVYDLPGTTRDSIYIPMERDGQHYTIIDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDAREGVSDQDLSLLGFILNAGRSLVIVVNKWDGLNQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSMLTRILQMATDEHQPPMMGGRRIKLKYAHPGGYNPPIIVVHGNQMDKLPDSYKRYLSNYYRRSLKIIGSPIRLLFQEGNNPFAGKRNKLTPNQLRKRKRLMKFIKKSKR
>NZ_CP006976.1|WP_014326288.1|1260133_1260523_+|hypothetical-protein
MANKKTLLLFPLITQCIFSLFLPFFNAFHLKGLTDVFILTTVPAFLFSLVCVYYQFHQRNLLQIAFFSGTISFFYTLTMLSCFLFNETFREPMSLWEQSLALLFYALMFALPSMMYAMVVLRLFLRKAP
>NZ_CP006976.1|WP_014326289.1|1260584_1261991_-|multicopper-oxidase-domain-containing-protein
MDNPARRQFFKTSLIATALSALPSSLLAATRQALRIPPLLETRRGKPIFLSLDSVQYPLEMGKTVEVWGFNGHYLGPTIKIRKGDFAKLNYRNNLPQGVSMSIQGLQASGELLGGVGRVLQPKETWSPIIPITQAASTCWYHSVSLANSAYQTYRGLAGMWIIEDEQSLKSGLPHKYGVNDIPLILQDMRLNNQGLQLFQPNQTALFGNRLFVNGQEAPYVNVPRGWVRLRLVNASLSRHYELRLDDEREMRLIASDQGFLPQAKVLKSIVLAPSERSELLIDLNEGESVRLIAGEKRDFLHVFTSLFADENELVDNTVLELRPEGLASVFSKQAEPQFNTDAVANLSNKVVQERQFHFDVNTGMVNDKHFDPKRVTNAKLNTTERWTLTANGIMGFRIQGAKFLIESINDTLVEQSEVAWKDSVLINGKVQILVKFEHMSSNNHPFLFGSANLMLADKGCIRLLVVQ
>NZ_CP006976.1|WP_005722594.1|1261994_1262720_-|1-acylglycerol-3-phosphate-O-acyltransferase
MLKLLRTIVIVFCCLLICVLGSIYSFIRFRNPSNVGIMARWFGRLHPLFGLTVEHRFPKNVDKFGRCIYIGNHQNNYDMVTISYMVQPRTVSVGKKSLIWIPFFGLLYWVTGNILIDRENRTKAHGTMNEVARRIHDDDLSVWMFPEGTRSRGRGLLPFKTGAFYAAIAAGVPIVPVVCSTTQGKIDLNRWDNGKVICEMLEPIDVSAYDKENVRELAAHCHQLMAQRIAELDAEIAQQSK
>NZ_CP006976.1|WP_014326290.1|1262830_1263550_+|UDP-2,3-diacylglucosamine-diphosphatase
MKKTYFIADLHLSENRPHLTHLFCDFMQQLAPQAEALYILGDLFDFWIGDDEESALIHTVQQQIHALSAQGVKCYFQHGNRDFLIGKRFAAACGMTLLPTYQRITLYGESVLLCHGDTLCIDDVAYQQYRKKVHQKWRQWLFLHLPLKVRLKIAEKIRTRSKADKKRKSEEIMDVNPDFVLQTFAQFGVKKIIHGHTHRQHIHHIPPHFTRIVLGDWGDTASILEVNEQQQVRFLTGKE
>NZ_CP006976.1|WP_005753379.1|1263553_1264060_+|DUF2301-domain-containing-membrane-protein
MADPHIQSPMDIWDYLTVILYRSGFVLAGIMTLLLPYKADIAHLGLLIAATLCASSLHIYMKSFRLILQLATWVALICQALGFEALALGGALVTLGGLCYKEYFCFRVFLLNAQPFFVALLWGAVQLNSPLFTQVMSLIVALLFFVLAFKKWQMPLHFDIGDKSKYQV
>NZ_CP006976.1|WP_005719907.1|1264108_1264675_-|elongation-factor-P
MATYTTSDFKPGLKFMQDGEPCVIVENEFVKPGKGQAFTRTRIRKLISGKVLDVNFKSGTSVEAADVMDLNLTYSYKDDAFWYFMHPETFEQYSADAKAIGDAEKWLLDQADCIVTLWNGAPISVTPPNFVELEIIDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEYVSRVK
>NZ_CP006976.1|WP_014326291.1|1264710_1265724_+|EF-P-beta-lysylation-protein-EpmB
MHILTQNIAIREEQSWTDHLANAISDPKILLETLNLPTENVEQDLEARRLFPLRVPLPFVEKMQKGNPQDPLFLQVMSFRDEFLQVEGFSKDPLEEQDAVVPSVLHKYHNRLLLMVKGGCAVNCRYCFRRHFPYADNKGNKANWQKALDYIANHPEIEEVIFSGGDPLMAKDHELDWLIKNLENIPHLQRLRIHTRLPVVIPQRITADLCQTLAESRFQTVLVTHINHPNEIDAFFAQAINKLREVGVLLLNQAVLLKGINDNAHILKQLGDKLFATNILPYYLHLLDKVEGASHFYLDDNRALNIYKELQSLTSGYLVPKLAREIAKEPNKTLYTA
>NZ_CP006976.1|WP_014326292.1|1265817_1266984_+|opacity-associated-protein-OapA
MDSEKHTPENQHNPEQSELDLEFSQVEPITPKKMAKPTPSFFDSVKGVFAKKTSHDASLKTTRQAPAFNEATSSSNTQTDLNADELTSEQPTSEDMGAAVVAPAVNWKNPETWPFLQILPQRHRRLFVALFGLILLLIIFFALKPSSQTVQSFEQQNSQAVPIQFQPLEKGQTVENTILDNLNQPADNSASATQDNTVTSAVNSETQPTSSASGTESTPTAIAPTKVEQPVAPKMGAADADKPSAVEKVANEKVTNEKVVTEKPKTVEKPKVVEKAKVPEKPTHTEKAKVEKKVAPVVDANPAKVSNSKTLTIPQGVSLMQVFRNHNLNIADVNAMTKASGAGNALSNFKAGDKVQISVNSQGRVNELRLENGAKFIRQADGSYIYKK
>NZ_CP006976.1|WP_016504397.1|1267049_1267793_-|cyclase-family-protein
MNTVSQAIAFLKTQKWVDLSHPVNPAIPYFPAFKPLETKTLFTVENDGFFSNQYTLVSQYGTHLDAPIHFAPNTRYLEDIPVAELVLPLYVIHKEQAVSENPDYRLSVEDILAFEAEHGKIAEGSFVAFASGWSSRWHDHTAFYNRDETGQAHTPGWSLEALKFLHEQRNVTAIGHETLDTDSALDFAKNNDLVGERYWLSQNKFQVEVLTNLAELPATGAAIFIGVPKIQHAPGFNARVFAVIASE

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Crispr_ID: NZ_CP006976_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006976_3

1610631-1611798

Unclear

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTTAAC	CRISPRCasFinder
TTTCTAAGCTGCCTATACGGCAGTTAAC	CRT
TTTCTAAGCTGCCTACACGGCAGTTAAC	PILER-CR

19 spacers

cas3

The CRISPR arrays of NZ_CP006976_3

>merge|NZ_CP006976|3|1610631-1611798|CRISPRCasFinder,CRT,PILER-CR
AATTGAAACTGCCTATACGGCAGTTAACACCAATCTGATAATCGAGCCAAGATCGCTTTATTTCTAAGCTGCCTACACGGCAGTTAACAAGAGCAGAAAACAGAAGAATTGGAAGATGACTTTCTAAGCTACCTACACGGCAGTTAACAGTGTAATTCCGCTCCGTTGCTTAAAATAATCTTTCTAAGCTGCCTACACGGCAGTTAACGTATGAGTTCGGCATTTGCAGAGCTTAAAGCTTTTCTAAGCTGCCTACACGGCAGTTAACTTGATCCTTTTACGCGTAAACAGAATGCTTTTTTTCTAAGCTGCCTATACGGCAGTTAACTATTCAGAATCAAAACGAATACCCAAAATTGCTTTCTAAGCTGCCTATACGGCAGTTAACATTCCTTTTCTTTTCAGAATTGATACCGCTTCTTTCTAAGCTGCCTATACGGCAGTTAACATCTGTAGCCGATGATGTAATTCAATCTTTTGTTTCTAAGCTGCCTATACGGCAGTTAACTCGCAAATTTTTGCGCTGGTGTAAGAGCTGTTTTTCTAAGCTGCCTATACGGCAGTTAACTAAAAAAATTGGTATTTCGCGCAAACGATCAATTTCTAAGCTGCCTATACGGCAGTTAACGCCCCGAAAGTTTCAAGCCAACACTTTCAAGCTTTCTAAGCTGCCTATACGGCAGTTAACGGTTGCAACAAATGCGTGATGAGCATTCAAAATTTCTAAGCTGCCTATACGGCAGTTAACATTCAATCCCCCCAACACCTGAAAGAAATAATTTTCTAAGCTGCCTATACGGCAGTTAACAAAAATATAACTTTTTTAACCGCTTATACAGCTTTCTAAGCTGCCTATACGGCAGTTAACGTATTGAAAGTGACAATTTTGTAGCGGCCAACTTTCTAAGCTGCCTATACGGCAGTTAACTTGATTTCTTGCTCACCACGTTGAATTGCAACTTTCTAAGCTGCCTATACGGCAGTTAACTTGAGCGGTTACAGTTACTGACACAAGTCCAATTTCTAAGCTGCCTATACGGCAGTTAACCAGTCACTGTTGCTGTACGTTCGCTTGAAACATTTCTAAGCTGCCTATACGGCAGTTAACTGATCAGCTTGTCTTTACAGCAAAAGAAAAATTTTCTAAGCTGCCTATACGGCAGTTAAC

>NZ_CP006976|3|3|1610631-1611798|CRISPRCasFinder
AATTGAAACTGCCTATACGGCAGTTAAC	ACCAATCTGATAATCGAGCCAAGATCGCTTTA
TTTCTAAGCTGCCTACACGGCAGTTAAC	AAGAGCAGAAAACAGAAGAATTGGAAGATGAC
TTTCTAAGCTACCTACACGGCAGTTAAC	AGTGTAATTCCGCTCCGTTGCTTAAAATAATC
TTTCTAAGCTGCCTACACGGCAGTTAAC	GTATGAGTTCGGCATTTGCAGAGCTTAAAGCT
TTTCTAAGCTGCCTACACGGCAGTTAAC	TTGATCCTTTTACGCGTAAACAGAATGCTTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TATTCAGAATCAAAACGAATACCCAAAATTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATTCCTTTTCTTTTCAGAATTGATACCGCTTC
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATCTGTAGCCGATGATGTAATTCAATCTTTTG
TTTCTAAGCTGCCTATACGGCAGTTAAC	TCGCAAATTTTTGCGCTGGTGTAAGAGCTGTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TAAAAAAATTGGTATTTCGCGCAAACGATCAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	GCCCCGAAAGTTTCAAGCCAACACTTTCAAGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	GGTTGCAACAAATGCGTGATGAGCATTCAAAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATTCAATCCCCCCAACACCTGAAAGAAATAAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAAAATATAACTTTTTTAACCGCTTATACAGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	GTATTGAAAGTGACAATTTTGTAGCGGCCAAC
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTGATTTCTTGCTCACCACGTTGAATTGCAAC
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTGAGCGGTTACAGTTACTGACACAAGTCCAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	CAGTCACTGTTGCTGTACGTTCGCTTGAAACA
TTTCTAAGCTGCCTATACGGCAGTTAAC	TGATCAGCTTGTCTTTACAGCAAAAGAAAAAT
TTTCTAAGCTGCCTATACGGCAGTTAAC

>NZ_CP006976|3|2|1610631-1611798|CRT
AATTGAAACTGCCTATACGGCAGTTAAC	ACCAATCTGATAATCGAGCCAAGATCGCTTTA
TTTCTAAGCTGCCTACACGGCAGTTAAC	AAGAGCAGAAAACAGAAGAATTGGAAGATGAC
TTTCTAAGCTACCTACACGGCAGTTAAC	AGTGTAATTCCGCTCCGTTGCTTAAAATAATC
TTTCTAAGCTGCCTACACGGCAGTTAAC	GTATGAGTTCGGCATTTGCAGAGCTTAAAGCT
TTTCTAAGCTGCCTACACGGCAGTTAAC	TTGATCCTTTTACGCGTAAACAGAATGCTTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TATTCAGAATCAAAACGAATACCCAAAATTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATTCCTTTTCTTTTCAGAATTGATACCGCTTC
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATCTGTAGCCGATGATGTAATTCAATCTTTTG
TTTCTAAGCTGCCTATACGGCAGTTAAC	TCGCAAATTTTTGCGCTGGTGTAAGAGCTGTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TAAAAAAATTGGTATTTCGCGCAAACGATCAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	GCCCCGAAAGTTTCAAGCCAACACTTTCAAGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	GGTTGCAACAAATGCGTGATGAGCATTCAAAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATTCAATCCCCCCAACACCTGAAAGAAATAAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAAAATATAACTTTTTTAACCGCTTATACAGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	GTATTGAAAGTGACAATTTTGTAGCGGCCAAC
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTGATTTCTTGCTCACCACGTTGAATTGCAAC
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTGAGCGGTTACAGTTACTGACACAAGTCCAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	CAGTCACTGTTGCTGTACGTTCGCTTGAAACA
TTTCTAAGCTGCCTATACGGCAGTTAAC	TGATCAGCTTGTCTTTACAGCAAAAGAAAAAT
TTTCTAAGCTGCCTATACGGCAGTTAAC

>NZ_CP006976|3|2|1610691-1611798|PILER-CR
TTTCTAAGCTGCCTACACGGCAGTTAAC	AAGAGCAGAAAACAGAAGAATTGGAAGATGAC
TTTCTAAGCTACCTACACGGCAGTTAAC	AGTGTAATTCCGCTCCGTTGCTTAAAATAATC
TTTCTAAGCTGCCTACACGGCAGTTAAC	GTATGAGTTCGGCATTTGCAGAGCTTAAAGCT
TTTCTAAGCTGCCTACACGGCAGTTAAC	TTGATCCTTTTACGCGTAAACAGAATGCTTTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TATTCAGAATCAAAACGAATACCCAAAATTGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATTCCTTTTCTTTTCAGAATTGATACCGCTTC
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATCTGTAGCCGATGATGTAATTCAATCTTTTG
TTTCTAAGCTGCCTATACGGCAGTTAAC	TCGCAAATTTTTGCGCTGGTGTAAGAGCTGTT
TTTCTAAGCTGCCTATACGGCAGTTAAC	TAAAAAAATTGGTATTTCGCGCAAACGATCAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	GCCCCGAAAGTTTCAAGCCAACACTTTCAAGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	GGTTGCAACAAATGCGTGATGAGCATTCAAAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	ATTCAATCCCCCCAACACCTGAAAGAAATAAT
TTTCTAAGCTGCCTATACGGCAGTTAAC	AAAAATATAACTTTTTTAACCGCTTATACAGC
TTTCTAAGCTGCCTATACGGCAGTTAAC	GTATTGAAAGTGACAATTTTGTAGCGGCCAAC
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTGATTTCTTGCTCACCACGTTGAATTGCAAC
TTTCTAAGCTGCCTATACGGCAGTTAAC	TTGAGCGGTTACAGTTACTGACACAAGTCCAA
TTTCTAAGCTGCCTATACGGCAGTTAAC	CAGTCACTGTTGCTGTACGTTCGCTTGAAACA
TTTCTAAGCTGCCTATACGGCAGTTAAC	TGATCAGCTTGTCTTTACAGCAAAAGAAAAAT
TTTCTAAGCTGCCTATACGGCAGTTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006976.1\|WP_014326407.1\|1602077_1602689_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|225467
NZ_CP006976.1\|WP_016504414.1\|1619860_1621228_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
NZ_CP006976.1\|WP_016504356.1\|1603838_1605281_+\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|224536
NZ_CP006976.1\|WP_014326419.1\|1621268_1621937_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380324
NZ_CP006976.1\|WP_014326417.1\|1618833_1619403_+\|Der-GTPase-activating-protein-YihI	unknown	unknown	gnl\|CDD\|367878
NZ_CP006976.1\|WP_016504355.1\|1602874_1603801_+\|aminoimidazole-riboside-kinase	unknown	unknown	gnl\|CDD\|236514
NZ_CP006976.1\|WP_005758057.1\|1611945_1613274_-\|ATP-dependent-RNA-helicase-SrmB	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236877
NZ_CP006976.1\|WP_005758065.1\|1598737_1600324_-\|L-lactate-permease	unknown	unknown	gnl\|CDD\|224535
NZ_CP006976.1\|WP_014326414.1\|1609613_1610579_+\|lipopolysaccharide-heptosyltransferase-RfaC	unknown	unknown	gnl\|CDD\|236809
NZ_CP006976.1\|WP_014326410.1\|1605306_1606326_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|131470
NZ_CP006976.1\|WP_005719208.1\|1619408_1619837_+\|DUF2489-domain-containing-protein	unknown	unknown	gnl\|CDD\|378470
NZ_CP006976.1\|WP_005724867.1\|1614146_1614851_-\|nicotinamide-riboside-transporter-PnuC	unknown	unknown	gnl\|CDD\|225742
NZ_CP006976.1\|WP_005752888.1\|1622032_1622368_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP006976.1\|WP_014326412.1\|1608094_1608502_+\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|225403
NZ_CP006976.1\|WP_014326415.1\|1613385_1614099_+\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|226608
NZ_CP006976.1\|WP_005724904.1\|1600682_1602050_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP006976.1\|WP_014326413.1\|1608570_1609617_+\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|182835
NZ_CP006976.1\|WP_014326411.1\|1606554_1607979_+\|PTS-sucrose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|131051
NZ_CP006976.1\|WP_005724855.1\|1618110_1618770_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP006976.1\|WP_014326416.1\|1615126_1618030_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319

Protein	Function_ID	Function_description	E-value
NZ_CP006976.1\|WP_014326407.1\|1602077_1602689_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|225467	COG2915, COG2915, Uncharacterized protein involved in purine metabolism [General function prediction only].	9.09394e-109
NZ_CP006976.1\|WP_016504414.1\|1619860_1621228_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
NZ_CP006976.1\|WP_016504356.1\|1603838_1605281_+\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	2.82868e-175
NZ_CP006976.1\|WP_014326419.1\|1621268_1621937_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|380324	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB. NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.	3.45531e-76
NZ_CP006976.1\|WP_014326417.1\|1618833_1619403_+\|Der-GTPase-activating-protein-YihI	gnl\|CDD\|367878	pfam04220, YihI, Der GTPase activator (YihI). YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI.	8.55528e-59
NZ_CP006976.1\|WP_016504355.1\|1602874_1603801_+\|aminoimidazole-riboside-kinase	gnl\|CDD\|236514	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.	0
NZ_CP006976.1\|WP_005758057.1\|1611945_1613274_-\|ATP-dependent-RNA-helicase-SrmB	gnl\|CDD\|236877	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.	0
NZ_CP006976.1\|WP_005758065.1\|1598737_1600324_-\|L-lactate-permease	gnl\|CDD\|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	6.14413e-167
NZ_CP006976.1\|WP_014326414.1\|1609613_1610579_+\|lipopolysaccharide-heptosyltransferase-RfaC	gnl\|CDD\|236809	PRK10964, PRK10964, lipopolysaccharide heptosyltransferase RfaC.	0
NZ_CP006976.1\|WP_014326410.1\|1605306_1606326_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|131470	TIGR02417, Fructose_repressor_Catabolite_repressor/activator., D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer. [Regulatory functions, DNA interactions].	0
NZ_CP006976.1\|WP_005719208.1\|1619408_1619837_+\|DUF2489-domain-containing-protein	gnl\|CDD\|378470	pfam10675, DUF2489, Protein of unknown function (DUF2489). This is a bacterial family of uncharacterized proteins.	1.12596e-47
NZ_CP006976.1\|WP_005724867.1\|1614146_1614851_-\|nicotinamide-riboside-transporter-PnuC	gnl\|CDD\|225742	COG3201, PnuC, Nicotinamide mononucleotide transporter [Coenzyme metabolism].	5.27246e-73
NZ_CP006976.1\|WP_005752888.1\|1622032_1622368_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.65249e-05
NZ_CP006976.1\|WP_014326412.1\|1608094_1608502_+\|copper-chaperone-PCu(A)C	gnl\|CDD\|225403	COG2847, COG2847, Copper(I)-binding protein [Inorganic ion transport and metabolism].	1.12449e-42
NZ_CP006976.1\|WP_014326415.1\|1613385_1614099_+\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	2.77606e-93
NZ_CP006976.1\|WP_005724904.1\|1600682_1602050_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP006976.1\|WP_014326413.1\|1608570_1609617_+\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|182835	PRK10916, PRK10916, ADP-heptose--LPS heptosyltransferase RfaF.	0
NZ_CP006976.1\|WP_014326411.1\|1606554_1607979_+\|PTS-sucrose-transporter-subunit-IIBC	gnl\|CDD\|131051	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component. This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).	0
NZ_CP006976.1\|WP_005724855.1\|1618110_1618770_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	6.19774e-102
NZ_CP006976.1\|WP_014326416.1\|1615126_1618030_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0

>NZ_CP006976.1|WP_014326414.1|1609613_1610579_+|lipopolysaccharide-heptosyltransferase-RfaC
MKICLIKTSSMGDILHSLPALTDAQRALPNLQVDWVVEESFAEIPHWHSAVRQVIPIALRRWRKTPFTALTRKQWKTYRTLLQSEQYDAVIDAQGLLKSALFATRLARGTRHGYDRHSIREPIAACFYDKKYAISYQQHAVERIRQLFAQSLNYPLPHTQGDYGIARHFPQHAQTMPYVLFFHGTTRQDKFLPDKQWRTLAEKLTAQGIQIHVPWSNPQEKQRAERIAQGLDLVTILPKSTLSELAQQIVNASAVVSVDTGLAHLSAALDKTNLTLYGATDPKLIGSYGKNQHYLVAESMDKIEADEIFQKLTALLSLNTI
>NZ_CP006976.1|WP_014326413.1|1608570_1609617_+|lipopolysaccharide-heptosyltransferase-II
MHILIIGPSWVGDMMMSHSLYQTLKQQYPQCEIDVMAPNWCKPLLERMPEVRQAITMPLGHGAFALGDRYRLGKALRHQYDMAIVLPNSLKSAFIPFFAKIPLRRGWKGESRYLFLNDLRSNKKDYPMMVQRYIALAFEKGAVPKAEDLPRPVPYLTVDPITQQHTLKKFEKQTALISPRPSIGFCPGAEFGPAKRWPHYHYAKLAEMLIQQGYAIRLFGSAKDEAVGEEIRQALPETMRHFCINLAGQTSLNEAVDLIADCTAIVTNDSGLMHIAAAVQRPLVALYGPTSPTYTPPLSEKAVIIRLIEDGLIKVRKGKDSDEGYHQSLIDIQPELVFDKLTGLLANT
>NZ_CP006976.1|WP_014326412.1|1608094_1608502_+|copper-chaperone-PCu(A)C
MKSLTQLLFILTALLPTSLFAHIHVEQAQMFSAKAGEPSAIFMNIHNTGNEDVSLALVQSDIRADIVLHGTQHGKMIEVTGINLPAHQMTALKRGGLHIMVFNVEQDLNAGDSFPLRLLFDNGEIMHIEAKIIQY
>NZ_CP006976.1|WP_014326411.1|1606554_1607979_+|PTS-sucrose-transporter-subunit-IIBC
MNFSQIAQQVIDKLGGKDNISAAAHCATRLRIVVKNENLIDKKGIENIEGVKGQFAVAGQYQIIFGSGTVNKVYAELSKLLGIGDMTTSEVAAAGTEKQGLLQRLVKGLADIFVPIIPAIVAGGLLMGIHSMLTAKGFFVEEKNVVDLYPAIADLVDFINTIANAPFVFLPVLLGFSATRKFGGNPFLGAALGMLLVHPALSDGWNYALTLTKGNIQYWHIFGLEIERVGYQGTVIPVLVASWVLATLEKNLRKVVPSFLDNLITPLFALFITGLLAFTVIGPIGREAGSLISTGLTWLYDTLGFVGGAIFGTLYAPIVITGMHQTFIAVETQLLAEVARTGGTFIFPIAAMSNIAQGAACLGAAYVMKDAKVRGIGVPSGISALLGITEPAMFGVNLRYRYPFISAMIGAGISSAVIALFNVKAIALGAAGLPGIPSIKPDSLAMYCVGMLISASIAFTLTVILGKRAQLKAE
>NZ_CP006976.1|WP_014326410.1|1605306_1606326_+|substrate-binding-domain-containing-protein
MSITNKKRITLSDIAKCCGLSTTTVSMILNNRGEEFKIKAETCQRVKAIAEQQGYRANVYAKSLKMQRSNVIGFVIPDLTNYGFACTAKILEKQCRENGLQLIITCSDDNPQQEKLAIERLLDRQIDFLITAPTHQDPSYYQKIGQHTPILQLDRYVPDLALNYVISNDSEHITALICRLCDQYQLTEFMYFGGQRTLSPSESRLAGFLQGLKQANLNLKKEWILHRTYQPESGYQMLAETEAKLGRLPQAIFTASYTLLEGVLRYLTEQKKMDLLLNRQLHLATFDDHDILNALPFHIHSIKQNHPQLAQQIFQHIMRYFAGKKSPNQKIDCDVIYRD
>NZ_CP006976.1|WP_016504356.1|1603838_1605281_+|glycoside-hydrolase-family-32-protein
MYIFNQGKYKSLHAQEVGELAQIRQHVLRDTQFRPTYHLAPETGLLNDPNGLVFDGEKYHIFYQWFPYAAIHGMKHWKHFITYDFHHFQAADPLIPDELFESHGCYSGGALLWQDQIVAFYTGNTRNAENQRIPHQNIAIFKKDGTLLKKRCLLNQAPTGYTEHVRDPKPFITEEGKIRFILGAQREDLSGTALIYEMTDLDATPQLIGEFKLPDFDNQQVFMWECPDLLKLQEQDLFLWSPQGKAQKTYCFQNHYHATYALGQYANLHFSAQHIEELDYGFDFYAPQSIQGSEGIYYAWVGLPDLTYPTDEYQWHSMLSLPRQFSIQQGILYQRPIPQVYAQCLPAHKYWVEGKQQIPHLDRSYVAFDAENQPFTLRFFTNQRGQQLILRYQNGILTLDRTYTTQTALMQQFGEQRHCILPQLNHVEIFFDRSVVEIFLNQGEKVMTSRFFIADRENALDSSRPLCVSVAELKPIILTP
>NZ_CP006976.1|WP_016504355.1|1602874_1603801_+|aminoimidazole-riboside-kinase
MGKIWVLGDAVVDLIPEGENTYLRCAGGAPANVAVGIARLGATTGFIGRVGDDPLGRFMLNKLQQENVCTQYMHLDPKQLTSTVIVDLKEGERSFTFMVNPSADQFLELSDLPHFNPNDWLHCCSIALINEPSRSSTFAAIHRIKAEGGFFSFDPNLRESLWNSPAEMKTVVNQVVALADVLKFSEEELLFLTDSDTLSDATAKLTQHYPDKLIIVTLGKLGATYYLQGKSQLISSKKALIPVDTTGAGDAFVSGLLFGISQVKNWQNPTALVEIIKQANACGALATTAKGAMSALPNKQQLDAFLAE
>NZ_CP006976.1|WP_014326407.1|1602077_1602689_-|high-frequency-lysogenization-protein-HflD
MANYYDITLALAGVCQAAKLVQQFAHEGQADQAAFETSLNTLLQIYPEDTLAVFGGKAQNLKLGLETLLEQMHGTGSDLSRYWISLLALESKLNKDPHAKAELARRIQYLPTQLEHDDLLDEQMLSTLASIYVDVISPLGKKIQVTGSTLYLQQLAMHHRIRACLLAGIRSAVLWRQVGGTKWQVLFSRRKIIAMAKQIYSSL
>NZ_CP006976.1|WP_005724904.1|1600682_1602050_-|adenylosuccinate-lyase
MQLNALTALSPIDGRYQDKVSSLRSIFSEFGLLKFRVTVEVRWLQKLAATDQIQEVSLLSQEANDYLNHIVENFSVQDAERIKEIERTTNHDVKAVEYFLKEKSEALPELAKISEFIHFACTSEDINNLSHALMLKTAREEVILPEWQNLIADISALANEYKTIPLLSRTHGQPASPSTIGKEMANVVYRLQRQFKQLQQIDILGKINGAVGNYNAHLSAYPDIDWHQFSEEFVTSLGLTWNPYTTQIEPHDYIAEFFDNVARFNTIIIDFDRDLWGYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGAKLPVSRWQRDLTDSTVLRNLGVGLGYCLIAYAATRKGISKLEVNEQHLRDELDQNWEVLAEPIQTVMRRYGIEKPYEKLKALTRGKRVDAEAMREFIETLDIPAQEKIRLQQMTPATYIGAAVELVEKL
>NZ_CP006976.1|WP_005758065.1|1598737_1600324_-|L-lactate-permease
MVFFLSILPIVLLIYLMVKRNSLPSYIALPLIAVLTYLLQAFYFGTDLTRLNANVIAGLIATQTPITIIFGAILFNRMMEVSGSTDVLRKWLANINPNPVAQIMIIGWAFAFMIEGASGFGTPAAIAAPILMGLGFKPLQVAMLALVMNSVPVSFGAVGTPTWFGFGPLGLSEDVVLEVGQKTAFIHFIAAFVIPVLALRFLVSWQQIKQNLVFIYISILACTIPYFLLAQVNYEFPALVGGAIGLFISILVANKGIGVSKTAQAEIQLEKVEFGVLVKALFPTMMLIAILIVTRIHQLGIKQLLNDATTWFSVSLGAFGEFKVSQALILSLNNILGQGINESYKTLYVPSLIPFIVTVIISIFVFKLNGTKAKTIAVSTYQQTKKPFFALLGALVMVKLMLVGNENYDSMVITIGKTFADVTGDKWVYFSSYLGAIGAFFSGSNTVSNLTFGGIQLSIAETTGMSVPLILALQSVGGAMGNMVCLNNIIAVCTVLNVSNQEGSILKRTVVPMFLYGVIAALVAVVIY
>NZ_CP006976.1|WP_005758057.1|1611945_1613274_-|ATP-dependent-RNA-helicase-SrmB
MTLATFQDFDLAPALLKALAKKGYTRPTAIQQETIPAAMEQRDVLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAESFAEFTNLSIATITGGVAYQNHGEIFNSNQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFASRLLTDPVQIDAEPSRRERKKIQQWYYHADSNEHKIKLLARFIDEEQVSRGIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTVLVATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGKIKRYTQELLKARIIEGLAPRTKAPKEGEVKTVSKKQKARIKAKREEKQKQEQKKKVKLRHKDTKNIGKRRKSNTPPANAE
>NZ_CP006976.1|WP_014326415.1|1613385_1614099_+|tRNA1(Val)-(adenine(37)-N6)-methyltransferase
MSAKQNGFTFKQFHIEHHRCAMKVGTDGILLGAWADVSQAERILDLGTGTGLIALMLAQRSTKESEIHAVELDQAAYLQAQANIHASPWAQRVHVYQQDAAEFCRNAVNKFDLIVANPPYFPQGVDCATPQRDLARYTATHRHVDWLNWASHCLSEQGKISMVLPFEAGETLLKQTALYCIARCEVITKKGKAPQRLLLTFSLQAQPLQPSQLIIYDESNRYHPDFIGLTKDFYLAF
>NZ_CP006976.1|WP_005724867.1|1614146_1614851_-|nicotinamide-riboside-transporter-PnuC
MNLQAVKNEFLGGWKPFEVAWLSLFLIAQIVIYIQNPDSILGMISGISGILCVVFVSKGKVSNYFFGLIFAYTYFYVAWQANYLGEMNTVLYVYIPAQFIGYFLWRENLQKGSEGAESVIAKSLTLKGWAIVLGTITIGTLLFVQALNAAGGSSTGLDGLTTVIVVVAQLLMILRYREQWLLWIALNVISIVLWTQAKEGSLAMVTMYSAYLLNSLYGYYNWTKLEKAHRQSVQ
>NZ_CP006976.1|WP_014326416.1|1615126_1618030_+|RNA-polymerase-associated-protein-RapA
MTFAVGQRWMSESENNLGLGLIVAIDMRTVTILFPASEEQRIYALNSAPLTRVLFQIGDEIVHHEGWKGNVLDILENNGVAFYLLKRQDNGEEITIQERDIAHQMTFSKPQDRLFTTQIDRNEHFTLRYQALTHQQAQFQSPLRGLRGIRAGLIPHQLHIAREVGQRTAPRVLLADEVGLGKTIEAGMILQQQLFAEKVERVLIIVPETLQHQWLVEMLRRFNLHFALFDEERCADFEDPASALWINPFSTESQIICALDWLCEKPKRVEQLLEAGFDMLIVDEAHHLGWSEHNPSLEYQLVEQLARQIPAVLLLTATPEQLGQESHFARLSLLDPDRFYDYQAFVQEQQQYQPVADAVQSLLADKPLSTVEKNHIADLLSEQDVEPMLKVIDSQAHDEQKALARQELIDNLIDRHGTSRVLFRNTRQGVKSFPHRTYNQITLELPKQYNNAANVLAMLGEKSENDSFYPEQMFQKLNPDARWWEFDPRLAWLITFLKNHREEKVLVICRHANTAIQLEQALREKEAIRAAVFHEKLSIVERDRAAAYFAQQEDGAQVLLSSSIGSEGRNFQFASHLVLFNLPDDPDLLEQCIGRLDRIGQSRDIQIHVPCFADTAQVVLARWYHEGLNAFEETCPMGMTLFETHQTQLNKFLQKPTALEGFAEFVSLTRKQQHELKQALEKGRDRLLELNSNGGEQAQQLATDIAEQDSTTELVNFTLNLFDIIGVDQEDLGEKSIVITPASNMLVPDFPGLKEEGATVTFDRQLSLAREDVEFMSWDHPLIRHGIDLITSGDIGKSAVSLLINKALPAGTLLLEMIYVVEAQAPKGLQLTRFLPPTPIRLLLDQKGNNLAEQVSFNALQKQLKPIGKNMANKVVKMVRPNIEQLVKLSEQKIVAQAQQIIHNTQQLADQTLSAELNRLTALQAVNKNIRQDEVDALENIRSQSLAQLQQATWRLDSLRVIVSNKE
>NZ_CP006976.1|WP_005724855.1|1618110_1618770_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MALISYTPPTDPYLDIVHYDDHFVVINKPSGLLSVPGNQPQYYDSAMSRVKEKYGFCEPAHRLDMSTSGLILFALSKAADRELKRQFREREPKKHYQALVWGHLEEDQGEVNLPLICDWENRPRQKICFERGKPALTLYEVLARYPNNTTRVKLTPITGRSHQLRLHMLALGHPILGDKFYAPPQAKALSPRLCLHAEQLAFRHPITQEWLSFSAPPAF
>NZ_CP006976.1|WP_014326417.1|1618833_1619403_+|Der-GTPase-activating-protein-YihI
MARKKKTRRVSDIMPARKVDKKVELPKGKPGKKLTRYELDAKAREDKKKKKRKGLASGSRHSATENNNKHQALEKKDPRIGSRKKVPLVVEFVNKPEKGMTIPPMKLEEKLPKQDPMLELELLESNECLNQLLDDLEAGKTLSAEDQQFVDDCLDRIAELMDELGISEDDDPEEDLLRTFEKIDINQFR
>NZ_CP006976.1|WP_005719208.1|1619408_1619837_+|DUF2489-domain-containing-protein
MWTNILLILAVLVIVAMASYAGYLLLALQKQKKAIANMRTARSQRLTESIVIIAKAMQNGDCNHSEGVIRLKMLLDPLGKKLKNYQAMYQLYEVVMEMPTHEKRRELKKNERMRLDLQRESAEAELEQKIRLELQQLLIDMK
>NZ_CP006976.1|WP_016504414.1|1619860_1621228_+|oxygen-independent-coproporphyrinogen-III-oxidase
MSDIVWDLALIQKYNQSGPRYTSYPTALEFNENYTNQDFIQATKRYPNRPLSLYVHIPFCHKLCYFCACNKTITRHQHKADIYLDFLEREIENRASLFKNRIATQVHWGGGTPTYLTEQQSARLMAMLRKHFTIAPDAEISIEMDPREIELNMLDHLRRIGFNRMSMGVQDFNKDVQKAINRVQDEDFIEALLKRARELGFQSTNLDLIYGLPLQNVDSFMFTLQKVIALNPDRLSVFNYAHLPSRFAGQAKIKNEQLPAPETKLTILQKMIETLGDAGYKFIGMDHFAKPDDELAIAQKQGVLHRNFQGYTTQEECDLLGLGVSAISLLGDTYAQNQKELKHYYTAIDNTGIALHKGFAMSEEDCLRRDVIKQLICNFKLDYQPIEQQYGIQFTSHFAEDLKLLAPLSEDGLLTIGEKDIQVSAKGRLLIRNICLCFDTYSREQAKRQQFSRII
>NZ_CP006976.1|WP_014326419.1|1621268_1621937_+|NAD(P)H-dependent-oxidoreductase
MSISKTDILNAFHFRHACKAYDPSKKISEEDFRFILETGRLSPSSFGFEPWKFLVIENPDIKALIRDTAWGAKDKVMDCSHFVVVLVRQPETLLADGEYVQHMMRDIHHIPEEMRKIRQNFYRTFSEQDFALTENPKAFYDWACRQSYIALANMLTSAAMIGIDSTPIEGFPLEKMDHIFVEQGLYDPKTYKLSVMIAFGYRLNEPKAKTRQAFDDVVEWVR
>NZ_CP006976.1|WP_005752888.1|1622032_1622368_-|helix-turn-helix-transcriptional-regulator
MQITRRNASTKGASVAEIDRKKVRNEIIQAMLMGELSQGEALRKLRIEMFGINQQHYIQLVKVSRQTLSNIENDKGNYSVETINKVFKPFGLELGLVPVSKALLKELFSTA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP006976_3	3.13\|1611379\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611379-1611410	32	NZ_CP006976.1	2300167-2300198	2	0.938

1. spacer 3.13|1611379|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to position: 2300167-2300198, mismatch: 2, identity: 0.938

attcaatccccccaacacctgaaagaaataat	CRISPR spacer
attcaatccccccaacacccgagagaaataat	Protospacer
*******************.**.*********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP006976_3	3.10\|1611199\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611199-1611230	32	NC_008193	Pasteurella phage F108, complete genome	7600-7631	0	1.0
NZ_CP006976_3	3.10\|1611199\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611199-1611230	32	DQ114220	Bacteriophage F108, complete genome	7600-7631	0	1.0
NZ_CP006976_3	3.17\|1611619\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611619-1611650	32	NC_003315	Haemophilus phage HP2, complete genome	7449-7480	0	1.0
NZ_CP006976_3	3.17\|1611619\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611619-1611650	32	AY027935	Haemophilus influenzae phage HP2, complete genome	7449-7480	0	1.0
NZ_CP006976_3	3.17\|1611619\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611619-1611650	32	U24159	Bacteriophage HP1 strain HP1c1, complete genome	7789-7820	0	1.0
NZ_CP006976_3	3.17\|1611619\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611619-1611650	32	NC_001697	Haemophilus phage HP1, complete genome	7789-7820	0	1.0
NZ_CP006976_3	3.19\|1611739\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611739-1611770	32	MH238466	Pasteurella phage AFS-2018a, complete genome	27063-27094	0	1.0
NZ_CP006976_3	3.1\|1610659\|32\|NZ_CP006976\|CRISPRCasFinder,CRT	1610659-1610690	32	MH238467	Pasteurella phage Pm86, complete genome	42601-42632	1	0.969
NZ_CP006976_3	3.4\|1610839\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610839-1610870	32	MH238466	Pasteurella phage AFS-2018a, complete genome	23770-23801	1	0.969
NZ_CP006976_3	3.14\|1611439\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611439-1611470	32	MH238467	Pasteurella phage Pm86, complete genome	53406-53437	1	0.969
NZ_CP006976_3	3.17\|1611619\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611619-1611650	32	NC_008193	Pasteurella phage F108, complete genome	7373-7404	1	0.969
NZ_CP006976_3	3.17\|1611619\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611619-1611650	32	DQ114220	Bacteriophage F108, complete genome	7373-7404	1	0.969
NZ_CP006976_3	3.3\|1610779\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610779-1610810	32	NC_008193	Pasteurella phage F108, complete genome	11445-11476	2	0.938
NZ_CP006976_3	3.3\|1610779\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610779-1610810	32	DQ114220	Bacteriophage F108, complete genome	11445-11476	2	0.938
NZ_CP006976_3	3.13\|1611379\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611379-1611410	32	MT902335	Pasteurella phage vB_PmuP_Pa7, complete genome	31794-31825	2	0.938
NZ_CP006976_3	3.13\|1611379\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611379-1611410	32	NC_047831	Pasteurella phage PHB02, complete genome	5648-5679	2	0.938
NZ_CP006976_1	1.4\|336534\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336534-336565	32	NZ_CP017756	Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence	73488-73519	5	0.844
NZ_CP006976_3	3.14\|1611439\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611439-1611470	32	JX157235	Uncultured phage contig22 genomic sequence	395-426	5	0.844
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	NZ_KX086582	Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence	25794-25825	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	NZ_KF831355	Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence	23170-23201	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	NZ_AP018563	Staphylococcus argenteus strain 58113 plasmid p1, complete sequence	18411-18442	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	NC_013327	Staphylococcus aureus plasmid pWBG749, complete sequence	26168-26199	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	CP030569	Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence	12940-12971	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	CP030458	Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence	15652-15683	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	NZ_AP017923	Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence	17835-17866	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	NC_013325	Staphylococcus aureus plasmid pWBG745, complete sequence	13088-13119	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	CP030696	Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence	28191-28222	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	CP030710	Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence	7547-7578	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	NZ_CP012757	Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence	37721-37752	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	NZ_CP042004	Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence	11471-11502	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	NZ_CP047857	Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence	26882-26913	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	NZ_CP012594	Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence	9160-9191	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	NZ_MH587575	Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence	17922-17953	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	NZ_MH587574	Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence	17842-17873	6	0.812
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	CP030603	Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence	34556-34587	6	0.812
NZ_CP006976_1	1.5\|336594\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336594-336625	32	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	465830-465861	7	0.781
NZ_CP006976_1	1.5\|336594\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336594-336625	32	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	650120-650151	7	0.781
NZ_CP006976_1	1.5\|336594\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336594-336625	32	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	1110688-1110719	7	0.781
NZ_CP006976_3	3.14\|1611439\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611439-1611470	32	NZ_CP054008	Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3	2771-2802	7	0.781
NZ_CP006976_3	3.14\|1611439\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611439-1611470	32	NZ_CP054008	Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3	20238-20269	7	0.781
NZ_CP006976_3	3.14\|1611439\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611439-1611470	32	NZ_LR134420	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 11	28159-28190	7	0.781
NZ_CP006976_3	3.17\|1611619\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611619-1611650	32	KC462197	Burkholderia phage ST79, complete genome	5655-5686	7	0.781
NZ_CP006976_1	1.3\|336474\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336474-336505	32	MN694758	Marine virus AFVG_250M853, complete genome	27038-27069	8	0.75
NZ_CP006976_1	1.3\|336474\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336474-336505	32	MN694774	Marine virus AFVG_250M941, complete genome	26488-26519	8	0.75
NZ_CP006976_1	1.3\|336474\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336474-336505	32	MN694077	Marine virus AFVG_250M852, complete genome	27041-27072	8	0.75
NZ_CP006976_1	1.3\|336474\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336474-336505	32	MN693487	Marine virus AFVG_25M100, complete genome	6473-6504	8	0.75
NZ_CP006976_1	1.3\|336474\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336474-336505	32	MN694586	Marine virus AFVG_250M370, complete genome	8206-8237	8	0.75
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	MK905543	Vibrio phage USC-1, complete genome	55483-55514	8	0.75
NZ_CP006976_3	3.2\|1610719\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1610719-1610750	32	MK358448	Vibrio phage 5, complete genome	209261-209292	8	0.75
NZ_CP006976_3	3.8\|1611079\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611079-1611110	32	KU686197	Synechococcus phage S-CAM3 isolate 0808SB25, complete genome	49711-49742	8	0.75
NZ_CP006976_3	3.8\|1611079\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611079-1611110	32	KU686199	Synechococcus phage S-CAM3 isolate 1010CC42, complete genome	49699-49730	8	0.75
NZ_CP006976_3	3.8\|1611079\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611079-1611110	32	KU686198	Synechococcus phage S-CAM3 isolate 0910TB04, complete genome	49699-49730	8	0.75
NZ_CP006976_3	3.15\|1611499\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611499-1611530	32	NZ_CP040048	Acinetobacter baumannii strain VB1190 plasmid unnamed1, complete sequence	504367-504398	8	0.75
NZ_CP006976_3	3.15\|1611499\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611499-1611530	32	NZ_CP053953	Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence	131657-131688	8	0.75
NZ_CP006976_3	3.15\|1611499\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611499-1611530	32	NZ_CP053950	Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence	25904-25935	8	0.75
NZ_CP006976_3	3.16\|1611559\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611559-1611590	32	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	81775-81806	8	0.75
NZ_CP006976_3	3.16\|1611559\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611559-1611590	32	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	82182-82213	8	0.75
NZ_CP006976_3	3.16\|1611559\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611559-1611590	32	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	85050-85081	8	0.75
NZ_CP006976_3	3.17\|1611619\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611619-1611650	32	NC_006882	Prochlorococcus phage P-SSP7, complete genome	10258-10289	8	0.75
NZ_CP006976_3	3.17\|1611619\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611619-1611650	32	GU071093	Prochlorococcus phage P-SSP7, partial genome	9484-9515	8	0.75
NZ_CP006976_1	1.1\|336353\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336353-336384	32	AM087120	Acidianus filamentous virus 3, partial viral genome	1603-1634	9	0.719
NZ_CP006976_1	1.1\|336353\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336353-336384	32	MN693550	Marine virus AFVG_25M93, complete genome	8160-8191	9	0.719
NZ_CP006976_1	1.2\|336413\|33\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336413-336445	33	NC_048656	Klebsiella phage vB_KpnM_BIS47, complete genome	11367-11399	9	0.727
NZ_CP006976_1	1.9\|336834\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336834-336865	32	LN846932	Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome	1949-1980	9	0.719
NZ_CP006976_3	3.7\|1611019\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611019-1611050	32	MN689509	Lactococcus phage CHPC1175, complete genome	2767-2798	9	0.719
NZ_CP006976_3	3.7\|1611019\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611019-1611050	32	MN689521	Lactococcus phage CHPC836, complete genome	2787-2818	9	0.719
NZ_CP006976_3	3.7\|1611019\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611019-1611050	32	MN689516	Lactococcus phage CHPC148, complete genome	2895-2926	9	0.719
NZ_CP006976_3	3.7\|1611019\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611019-1611050	32	NC_004746	Lactococcus phage 4268, complete genome	16547-16578	9	0.719
NZ_CP006976_3	3.7\|1611019\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611019-1611050	32	MN534316	Lactococcus phage proPhi2, complete genome	17507-17538	9	0.719
NZ_CP006976_3	3.7\|1611019\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611019-1611050	32	AF323669	Bacteriophage bIL286, complete genome	20242-20273	9	0.719
NZ_CP006976_3	3.7\|1611019\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611019-1611050	32	MN689530	Lactococcus phage CHPC974, partial genome	2882-2913	9	0.719
NZ_CP006976_3	3.7\|1611019\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611019-1611050	32	AJ245616	Lactococcus lactis phage BK5-T complete genome	2890-2921	9	0.719
NZ_CP006976_3	3.7\|1611019\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611019-1611050	32	AF176025	Lactococcus phage BK5-T, complete genome	2890-2921	9	0.719
NZ_CP006976_3	3.7\|1611019\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611019-1611050	32	AF489521	Lactococcus bacteriophage 4268, complete genome	16547-16578	9	0.719
NZ_CP006976_3	3.7\|1611019\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611019-1611050	32	MN534317	Lactococcus phage proPhi4, complete genome	17507-17538	9	0.719
NZ_CP006976_3	3.7\|1611019\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611019-1611050	32	NC_002667	Lactococcus prophage bIL286, complete genome	20242-20273	9	0.719
NZ_CP006976_3	3.8\|1611079\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611079-1611110	32	NC_018694	Bacillus thuringiensis MC28 plasmid pMC54, complete sequence	2727-2758	9	0.719
NZ_CP006976_3	3.15\|1611499\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611499-1611530	32	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	697616-697647	9	0.719
NZ_CP006976_3	3.17\|1611619\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611619-1611650	32	MH986725	Pseudoalteromonas phage DW, complete genome	24109-24140	9	0.719
NZ_CP006976_3	3.17\|1611619\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611619-1611650	32	NC_009236	Burkholderia phage phiE12-2 chromosome, complete genome	11050-11081	9	0.719
NZ_CP006976_3	3.17\|1611619\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611619-1611650	32	CP000624	Burkholderia phage phiE12-2, complete genome	11050-11081	9	0.719
NZ_CP006976_3	3.19\|1611739\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611739-1611770	32	CP002510	Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence	62817-62848	9	0.719
NZ_CP006976_1	1.3\|336474\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336474-336505	32	NZ_CP026928	Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence	5680-5711	10	0.688
NZ_CP006976_1	1.3\|336474\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336474-336505	32	GU943040	Uncultured phage MedDCM-OCT-S09-C28 genomic sequence	16896-16927	10	0.688
NZ_CP006976_1	1.4\|336534\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336534-336565	32	NZ_CP025547	Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence	284092-284123	10	0.688
NZ_CP006976_1	1.10\|336894\|32\|NZ_CP006976\|PILER-CR,CRISPRCasFinder,CRT	336894-336925	32	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	505837-505868	10	0.688
NZ_CP006976_3	3.7\|1611019\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611019-1611050	32	NZ_CP044537	Borrelia sp. CA690 plasmid lp28-4, complete sequence	34383-34414	10	0.688
NZ_CP006976_3	3.10\|1611199\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611199-1611230	32	MK496701	Capybara microvirus Cap1_SP_93, complete genome	2200-2231	11	0.656

1. spacer 3.10|1611199|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 0, identity: 1.0

taaaaaaattggtatttcgcgcaaacgatcaa	CRISPR spacer
taaaaaaattggtatttcgcgcaaacgatcaa	Protospacer
********************************

2. spacer 3.10|1611199|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 0, identity: 1.0

taaaaaaattggtatttcgcgcaaacgatcaa	CRISPR spacer
taaaaaaattggtatttcgcgcaaacgatcaa	Protospacer
********************************

3. spacer 3.17|1611619|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NC_003315 (Haemophilus phage HP2, complete genome) position: , mismatch: 0, identity: 1.0

ttgagcggttacagttactgacacaagtccaa	CRISPR spacer
ttgagcggttacagttactgacacaagtccaa	Protospacer
********************************

4. spacer 3.17|1611619|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to AY027935 (Haemophilus influenzae phage HP2, complete genome) position: , mismatch: 0, identity: 1.0

ttgagcggttacagttactgacacaagtccaa	CRISPR spacer
ttgagcggttacagttactgacacaagtccaa	Protospacer
********************************

5. spacer 3.17|1611619|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to U24159 (Bacteriophage HP1 strain HP1c1, complete genome) position: , mismatch: 0, identity: 1.0

ttgagcggttacagttactgacacaagtccaa	CRISPR spacer
ttgagcggttacagttactgacacaagtccaa	Protospacer
********************************

6. spacer 3.17|1611619|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NC_001697 (Haemophilus phage HP1, complete genome) position: , mismatch: 0, identity: 1.0

ttgagcggttacagttactgacacaagtccaa	CRISPR spacer
ttgagcggttacagttactgacacaagtccaa	Protospacer
********************************

7. spacer 3.19|1611739|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MH238466 (Pasteurella phage AFS-2018a, complete genome) position: , mismatch: 0, identity: 1.0

tgatcagcttgtctttacagcaaaagaaaaat	CRISPR spacer
tgatcagcttgtctttacagcaaaagaaaaat	Protospacer
********************************

8. spacer 3.1|1610659|32|NZ_CP006976|CRISPRCasFinder,CRT matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 1, identity: 0.969

accaatctgataatcgagccaagatcgcttta	CRISPR spacer
accaatctgataatcgagccaaaatcgcttta	Protospacer
**********************.*********

9. spacer 3.4|1610839|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MH238466 (Pasteurella phage AFS-2018a, complete genome) position: , mismatch: 1, identity: 0.969

gtatgagttcggcatttgcagagcttaaagct	CRISPR spacer
gcatgagttcggcatttgcagagcttaaagct	Protospacer
*.******************************

10. spacer 3.14|1611439|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MH238467 (Pasteurella phage Pm86, complete genome) position: , mismatch: 1, identity: 0.969

aaaaatataacttttttaaccgcttatacagc	CRISPR spacer
aaaaatataacttttttaaccgcttattcagc	Protospacer
*************************** ****

11. spacer 3.17|1611619|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 1, identity: 0.969

ttgagcggttacagttactgacacaagtccaa	CRISPR spacer
ttgagcggttacagttactgacacaagtccag	Protospacer
*******************************.

12. spacer 3.17|1611619|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 1, identity: 0.969

ttgagcggttacagttactgacacaagtccaa	CRISPR spacer
ttgagcggttacagttactgacacaagtccag	Protospacer
*******************************.

13. spacer 3.3|1610779|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NC_008193 (Pasteurella phage F108, complete genome) position: , mismatch: 2, identity: 0.938

agtgtaattccgctccgttgcttaaaataatc	CRISPR spacer
agtgtaattccgcgccattgcttaaaataatc	Protospacer
************* **.***************

14. spacer 3.3|1610779|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to DQ114220 (Bacteriophage F108, complete genome) position: , mismatch: 2, identity: 0.938

agtgtaattccgctccgttgcttaaaataatc	CRISPR spacer
agtgtaattccgcgccattgcttaaaataatc	Protospacer
************* **.***************

15. spacer 3.13|1611379|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MT902335 (Pasteurella phage vB_PmuP_Pa7, complete genome) position: , mismatch: 2, identity: 0.938

attcaatccccccaacacctgaaagaaataat	CRISPR spacer
attcaatccccccaacacccgagagaaataat	Protospacer
*******************.**.*********

16. spacer 3.13|1611379|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NC_047831 (Pasteurella phage PHB02, complete genome) position: , mismatch: 2, identity: 0.938

attcaatccccccaacacctgaaagaaataat	CRISPR spacer
attcaatccccccaacacccgagagaaataat	Protospacer
*******************.**.*********

17. spacer 1.4|336534|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017756 (Cupriavidus malaysiensis strain USMAA1020 isolate pure plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

attcgatttccagtgccgaaaat-ccatgccct	CRISPR spacer
attcgatttctggtgccgaaaatggcttgccc-	Protospacer
**********..***********  * *****

18. spacer 3.14|1611439|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to JX157235 (Uncultured phage contig22 genomic sequence) position: , mismatch: 5, identity: 0.844

aaaaatataacttttttaaccgcttatacagc-	CRISPR spacer
caaaatataactattttaacggc-tatacaacg	Protospacer
 *********** ******* ** ******.*

19. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX086582 (Staphylococcus aureus strain WBG1024 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

20. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KF831355 (Staphylococcus aureus strain A960649 plasmid pBU108a, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

21. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018563 (Staphylococcus argenteus strain 58113 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

22. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NC_013327 (Staphylococcus aureus plasmid pWBG749, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

23. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to CP030569 (Staphylococcus aureus strain ER01892.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

24. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to CP030458 (Staphylococcus aureus strain ER04013.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

25. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017923 (Staphylococcus aureus strain JP02758 plasmid pJP080, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

26. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NC_013325 (Staphylococcus aureus plasmid pWBG745, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

27. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to CP030696 (Staphylococcus aureus strain ER01532.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

28. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to CP030710 (Staphylococcus aureus strain ER01174.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

29. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012757 (Staphylococcus aureus subsp. aureus strain JS395 plasmid, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

30. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042004 (Staphylococcus aureus strain B3-14B plasmid pSALNT46, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

31. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047857 (Staphylococcus aureus strain UP_1435 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

32. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012594 (Staphylococcus aureus strain HOU1444-VR plasmid pVR-MSSA_01, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

33. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH587575 (Staphylococcus aureus strain WBG4880 plasmid pWBG637, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

34. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH587574 (Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

35. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to CP030603 (Staphylococcus aureus strain ER00484.3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
taacggtag-aaacagaagaatttgaatatgac	Protospacer
 ** .*.** ************* *** *****

36. spacer 1.5|336594|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  **

37. spacer 1.5|336594|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  **

38. spacer 1.5|336594|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 7, identity: 0.781

ataatgacgtgttcaactaacggctgacaatc	CRISPR spacer
tttctgacgtgttcaactatcggctgaacata	Protospacer
 *  *************** *******  **

39. spacer 3.14|1611439|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054008 (Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3) position: , mismatch: 7, identity: 0.781

aaaaatataacttttttaaccgct-tatacagc	CRISPR spacer
gaaaatataaattttttgaccgctctgtagaa-	Protospacer
.********* ******.****** *.** *.

40. spacer 3.14|1611439|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054008 (Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3) position: , mismatch: 7, identity: 0.781

aaaaatataacttttttaaccgct-tatacagc	CRISPR spacer
gaaaatataaattttttgaccgctctgtagaa-	Protospacer
.********* ******.****** *.** *.

41. spacer 3.14|1611439|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134420 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 11) position: , mismatch: 7, identity: 0.781

-aaaaatataacttttttaaccgcttatacagc	CRISPR spacer
ccatcatct-acttttttaaccgcttttatagc	Protospacer
  *  ** * **************** **.***

42. spacer 3.17|1611619|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to KC462197 (Burkholderia phage ST79, complete genome) position: , mismatch: 7, identity: 0.781

--ttgagcggttacagttactgacacaagtccaa	CRISPR spacer
cgtcctgcg--tacagttattgacacgagtccaa	Protospacer
  *.  ***  ********.******.*******

43. spacer 1.3|336474|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to MN694758 (Marine virus AFVG_250M853, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

44. spacer 1.3|336474|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to MN694774 (Marine virus AFVG_250M941, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

45. spacer 1.3|336474|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to MN694077 (Marine virus AFVG_250M852, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

46. spacer 1.3|336474|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to MN693487 (Marine virus AFVG_25M100, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

47. spacer 1.3|336474|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to MN694586 (Marine virus AFVG_250M370, complete genome) position: , mismatch: 8, identity: 0.75

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
aaaacactagaagatttaaaggtcgagggagg	Protospacer
.****************** ****.  *.*..

48. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MK905543 (Vibrio phage USC-1, complete genome) position: , mismatch: 8, identity: 0.75

aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
agtctgaggaaacagaagaattggaagacgat	Protospacer
*.    **.*******************.**.

49. spacer 3.2|1610719|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MK358448 (Vibrio phage 5, complete genome) position: , mismatch: 8, identity: 0.75

aagagcagaaaacagaagaattggaagatgac	CRISPR spacer
agtctgaggaaacagaagaattggaagacgat	Protospacer
*.    **.*******************.**.

50. spacer 3.8|1611079|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 8, identity: 0.75

atctgtagccgatgatgtaattcaatcttttg	CRISPR spacer
gtattcatccgatgatggaattgaatctttta	Protospacer
.* * .* ********* **** ********.

51. spacer 3.8|1611079|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 8, identity: 0.75

atctgtagccgatgatgtaattcaatcttttg	CRISPR spacer
gtattcatccgatgatggaattgaatctttta	Protospacer
.* * .* ********* **** ********.

52. spacer 3.8|1611079|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 8, identity: 0.75

atctgtagccgatgatgtaattcaatcttttg	CRISPR spacer
gtattcatccgatgatggaattgaatctttta	Protospacer
.* * .* ********* **** ********.

53. spacer 3.15|1611499|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040048 (Acinetobacter baumannii strain VB1190 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gtattgaaagtgacaattttgtagcggccaac	CRISPR spacer
ttattgaaagtgaaaattttgtaccgttagat	Protospacer
 ************ ********* ** . .*.

54. spacer 3.15|1611499|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gtattgaaagtgacaattttgta-----gcggccaac	CRISPR spacer
gttttgaatgtgacaattttgtaatcttgctg-----	Protospacer
** ***** **************     ** *

55. spacer 3.15|1611499|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gtattgaaagtgacaattttgta-----gcggccaac	CRISPR spacer
gttttgaatgtgacaattttgtaatcttgctg-----	Protospacer
** ***** **************     ** *

56. spacer 3.16|1611559|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 8, identity: 0.75

ttgatttcttgctcaccacgttgaattgcaac	CRISPR spacer
tagaccggttgctcaccgcgctgaattgcaat	Protospacer
* **..  *********.**.**********.

57. spacer 3.16|1611559|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 8, identity: 0.75

ttgatttcttgctcaccacgttgaattgcaac	CRISPR spacer
tagaccggttgctcaccgcgctgaattgcaat	Protospacer
* **..  *********.**.**********.

58. spacer 3.16|1611559|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 8, identity: 0.75

ttgatttcttgctcaccacgttgaattgcaac	CRISPR spacer
tagaccggttgctcaccgcgctgaattgcaat	Protospacer
* **..  *********.**.**********.

59. spacer 3.17|1611619|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NC_006882 (Prochlorococcus phage P-SSP7, complete genome) position: , mismatch: 8, identity: 0.75

---ttgagcggttacagttactgacacaagtccaa	CRISPR spacer
ggctt---tgcctacagctactgacataagtccaa	Protospacer
   **   .* .*****.********.********

60. spacer 3.17|1611619|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to GU071093 (Prochlorococcus phage P-SSP7, partial genome) position: , mismatch: 8, identity: 0.75

---ttgagcggttacagttactgacacaagtccaa	CRISPR spacer
ggctt---tgcctacagctactgacataagtccaa	Protospacer
   **   .* .*****.********.********

61. spacer 1.1|336353|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to AM087120 (Acidianus filamentous virus 3, partial viral genome) position: , mismatch: 9, identity: 0.719

attcgtgacaaaagacgaatataagaaaagaa	CRISPR spacer
aaggaaagaaaatgacgaatataagaaaagaa	Protospacer
*   . .. *** *******************

62. spacer 1.1|336353|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

attcgtgacaaaagacgaatataagaaaagaa	CRISPR spacer
gcttttatcaaaagaagaatataaaaaaagat	Protospacer
..*. *. ******* ********.******

63. spacer 1.2|336413|33|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 9, identity: 0.727

gtcgttgaaacggcaccatgggcgtttgcattt	CRISPR spacer
ctgatggaaacgtcaccattggcgtttgcagcg	Protospacer
 * .* ****** ****** ********** .

64. spacer 1.9|336834|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to LN846932 (Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome) position: , mismatch: 9, identity: 0.719

aagcccaccttgcgcttgaacagatgaattaa	CRISPR spacer
ttgctttccttgcgctttaacagatgtatttt	Protospacer
  **.. ********** ******** ***

65. spacer 3.7|1611019|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgatcttaacta	Protospacer
****.************ ****** ... .*

66. spacer 3.7|1611019|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MN689521 (Lactococcus phage CHPC836, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgatcttaacta	Protospacer
****.************ ****** ... .*

67. spacer 3.7|1611019|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MN689516 (Lactococcus phage CHPC148, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgatcttaacta	Protospacer
****.************ ****** ... .*

68. spacer 3.7|1611019|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NC_004746 (Lactococcus phage 4268, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgatcttaacta	Protospacer
****.************ ****** ... .*

69. spacer 3.7|1611019|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MN534316 (Lactococcus phage proPhi2, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgattttaacta	Protospacer
****.************ ****** ... .*

70. spacer 3.7|1611019|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to AF323669 (Bacteriophage bIL286, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgattttaacta	Protospacer
****.************ ****** ... .*

71. spacer 3.7|1611019|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MN689530 (Lactococcus phage CHPC974, partial genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgatcttaacta	Protospacer
****.************ ****** ... .*

72. spacer 3.7|1611019|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to AJ245616 (Lactococcus lactis phage BK5-T complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgattttaacta	Protospacer
****.************ ****** ... .*

73. spacer 3.7|1611019|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to AF176025 (Lactococcus phage BK5-T, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgattttaacta	Protospacer
****.************ ****** ... .*

74. spacer 3.7|1611019|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to AF489521 (Lactococcus bacteriophage 4268, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgatcttaacta	Protospacer
****.************ ****** ... .*

75. spacer 3.7|1611019|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MN534317 (Lactococcus phage proPhi4, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgattttaacta	Protospacer
****.************ ****** ... .*

76. spacer 3.7|1611019|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NC_002667 (Lactococcus prophage bIL286, complete genome) position: , mismatch: 9, identity: 0.719

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attctttttcttttcagcattgattttaacta	Protospacer
****.************ ****** ... .*

77. spacer 3.8|1611079|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NC_018694 (Bacillus thuringiensis MC28 plasmid pMC54, complete sequence) position: , mismatch: 9, identity: 0.719

atctgtagccgatgatgtaattcaatcttttg	CRISPR spacer
atctttagcagatgatgtaattcttcttgcag	Protospacer
**** **** *************  ..* . *

78. spacer 3.15|1611499|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 9, identity: 0.719

gtattgaaagtgacaattttgtagcg--gccaac	CRISPR spacer
gttttgaatgtgacaattttgtaatattgctg--	Protospacer
** ***** **************...  **..

79. spacer 3.17|1611619|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MH986725 (Pseudoalteromonas phage DW, complete genome) position: , mismatch: 9, identity: 0.719

ttgagcggttacagttactgacacaagtccaa	CRISPR spacer
ctggaaccgtacagttattgacacgagtccaa	Protospacer
.**..    ********.******.*******

80. spacer 3.17|1611619|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NC_009236 (Burkholderia phage phiE12-2 chromosome, complete genome) position: , mismatch: 9, identity: 0.719

ttgagcggttacagttactgacacaagtccaa	CRISPR spacer
cgtcccgcgtacagttattgacacgagtccaa	Protospacer
.    **  ********.******.*******

81. spacer 3.17|1611619|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to CP000624 (Burkholderia phage phiE12-2, complete genome) position: , mismatch: 9, identity: 0.719

ttgagcggttacagttactgacacaagtccaa	CRISPR spacer
cgtcccgcgtacagttattgacacgagtccaa	Protospacer
.    **  ********.******.*******

82. spacer 3.19|1611739|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to CP002510 (Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence) position: , mismatch: 9, identity: 0.719

tgatcagcttgtctttacagcaaaagaaaaat	CRISPR spacer
acgtgagcttgaatttacagcaaaagaatata	Protospacer
  .* ******  *************** *

83. spacer 1.3|336474|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026928 (Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
tcgcggcaagaagatttaaccgtcatcgaaat	Protospacer
  .  .* ************ *****.****

84. spacer 1.3|336474|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to GU943040 (Uncultured phage MedDCM-OCT-S09-C28 genomic sequence) position: , mismatch: 10, identity: 0.688

gaaacactagaagatttaacggtcattgaaaa	CRISPR spacer
gaaacactagaacttttaacggttcaggcggt	Protospacer
************  *********.   * ..

85. spacer 1.4|336534|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025547 (Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

attcgatttccagtgccgaaaatccatgccct	CRISPR spacer
gctgctgttccagccccgaaaatccatgccga	Protospacer
..*    ******. ***************

86. spacer 1.10|336894|32|NZ_CP006976|PILER-CR,CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

tttaagctacgtttatccgcaagattcactac	CRISPR spacer
acaaagccacggttatccgcaagattgtagag	Protospacer
 . ****.*** **************    *

87. spacer 3.7|1611019|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044537 (Borrelia sp. CA690 plasmid lp28-4, complete sequence) position: , mismatch: 10, identity: 0.688

attccttttcttttcagaattgataccgcttc	CRISPR spacer
attgcttttcttttgagaattgacttcttcat	Protospacer
*** ********** ********. .* .. .

88. spacer 3.10|1611199|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to MK496701 (Capybara microvirus Cap1_SP_93, complete genome) position: , mismatch: 11, identity: 0.656

taaaaaaattggtatttcgcgcaaacgatcaa	CRISPR spacer
caaaataattggtattacgcgcaagaaggtgc	Protospacer
.**** ********** *******. .. ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

35036 : 140119

113

Mannheimia_phage(40.32%)

transposase,integrase,tail,terminase,tRNA

attL 34887:34932|attR 81145:81190

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
34887:34932	attL	NA	NA	NA	NA
WP_064775600.1\|35036_36209_-\|integrase	tyrosine-type recombinase/integrase	A0A059VF45	Pseudomonas_phage	5.9e-111	52.9
WP_051127937.1\|36584_36857_-	hypothetical protein	A0A0M3LQA6	Mannheimia_phage	4.9e-08	41.1
WP_016533427.1\|37155_37455_-	hypothetical protein	NA	NA	NA	NA
WP_016570062.1\|37464_37998_-	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	1.3e-20	36.6
WP_014391447.1\|38132_38732_-	hypothetical protein	A0A218KC93	Bacillus_phage	4.6e-19	37.6
WP_014391448.1\|38782_39571_-	DUF2303 family protein	C5IHK3	Burkholderia_virus	3.2e-20	29.2
WP_016570064.1\|39642_39996_-	hypothetical protein	I6XKT1	Burkholderia_virus	1.7e-05	31.8
WP_016533530.1\|40038_40230_-	hypothetical protein	NA	NA	NA	NA
WP_016570065.1\|40241_40706_-	single-stranded DNA-binding protein	A0A2I7RK19	Vibrio_phage	6.1e-35	69.0
WP_064775601.1\|40709_41321_-	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	6.3e-88	76.4
WP_016533454.1\|41313_42165_-	phage recombination protein Bet	A0A2H4JAQ4	uncultured_Caudovirales_phage	4.8e-62	63.9
WP_016570067.1\|42168_43155_-	hypothetical protein	A0A0M3LR66	Mannheimia_phage	5.8e-51	39.9
WP_016570068.1\|43332_43569_-	hypothetical protein	NA	NA	NA	NA
WP_064775602.1\|43555_43840_-	hypothetical protein	NA	NA	NA	NA
WP_014390710.1\|43906_44218_+	hypothetical protein	NA	NA	NA	NA
WP_016569990.1\|44279_44915_-	antirepressor	A6XMM0	Bacillus_virus	2.1e-22	53.3
WP_014391102.1\|45376_45910_-	hypothetical protein	NA	NA	NA	NA
WP_014391456.1\|45997_46261_-	hypothetical protein	NA	NA	NA	NA
WP_016533507.1\|46485_46716_-	hypothetical protein	A0A0M3LNV4	Mannheimia_phage	3.4e-10	52.8
WP_016533476.1\|47334_47718_-	hypothetical protein	NA	NA	NA	NA
WP_016533477.1\|47714_48194_-	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	8.3e-19	47.1
WP_016533478.1\|48196_48460_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_064775603.1\|48605_49295_-	helix-turn-helix transcriptional regulator	Q7Y5W5	Haemophilus_phage	1.7e-73	58.2
WP_005720263.1\|49422_49632_+	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	5.5e-12	52.3
WP_014391093.1\|49700_49928_+	hypothetical protein	NA	NA	NA	NA
WP_064775604.1\|49985_50687_+	DNA-binding protein	A0A2I7RHG4	Vibrio_phage	7.1e-35	55.8
WP_014390722.1\|50683_51037_+	HNH endonuclease	A0A1C9LVX4	Vibrio_phage	1.3e-08	33.6
WP_016533442.1\|51038_51941_+	hypothetical protein	A0A0U4JX08	Bacillus_phage	5.5e-32	37.7
WP_016533441.1\|51940_52630_+	replication protein P	D0UIL4	Aggregatibacter_phage	1.4e-32	34.1
WP_041423202.1\|52639_53170_+	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	1.0e-54	58.9
WP_016569985.1\|53159_53618_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	5.8e-38	53.4
WP_016533468.1\|53691_53904_+	hypothetical protein	NA	NA	NA	NA
WP_064775605.1\|53991_54594_+	recombinase NinG	H6WRY9	Salmonella_phage	6.3e-32	38.2
WP_016533470.1\|54593_54959_+	hypothetical protein	A0A0M3LR87	Mannheimia_phage	3.5e-09	27.3
WP_143930513.1\|55148_55334_+	hypothetical protein	NA	NA	NA	NA
WP_014391475.1\|55547_55808_+	hypothetical protein	NA	NA	NA	NA
WP_014667794.1\|55804_56335_+	lysozyme	A0A0M3LPQ1	Mannheimia_phage	9.7e-45	50.9
WP_014667795.1\|56307_56631_+	DUF2570 family protein	NA	NA	NA	NA
WP_064775606.1\|56536_56818_+	hypothetical protein	NA	NA	NA	NA
WP_014390736.1\|56852_57287_-	CopG family transcriptional regulator	A0A0R6PJ17	Moraxella_phage	1.0e-20	38.0
WP_016533497.1\|57315_57498_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	3.8e-09	54.2
WP_014390737.1\|57580_58078_+\|terminase	terminase	C7U0W1	Enterobacteria_phage	7.4e-47	70.7
WP_016533292.1\|58061_59288_+\|terminase	PBSX family phage terminase large subunit	A0A0M3LTA2	Mannheimia_phage	9.4e-192	77.0
WP_016533291.1\|59302_60748_+	DUF1073 domain-containing protein	A0A0M3LPQ5	Mannheimia_phage	2.4e-146	58.6
WP_014390740.1\|60701_61673_+	hypothetical protein	F1C5D8	Cronobacter_phage	1.6e-53	41.0
WP_016533290.1\|61687_63034_+	hypothetical protein	A0A0M3LQ78	Mannheimia_phage	4.0e-127	55.3
WP_016533289.1\|63033_63468_+	hypothetical protein	A0A0M3LPQ2	Mannheimia_phage	1.1e-54	75.7
WP_016533288.1\|63479_64478_+	hypothetical protein	A0A0M3LQZ1	Mannheimia_phage	9.1e-145	74.7
WP_151202332.1\|64488_65037_+	hypothetical protein	A0A0M3LR32	Mannheimia_phage	5.9e-13	73.9
WP_042743192.1\|65017_65386_+	hypothetical protein	A0A0M3LQS8	Mannheimia_phage	4.7e-22	42.1
WP_014390746.1\|65388_65733_+	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	3.0e-31	57.9
WP_014390747.1\|65737_66109_+	hypothetical protein	F1C5E3	Cronobacter_phage	1.3e-24	51.2
WP_016533319.1\|66105_66477_+	hypothetical protein	NA	NA	NA	NA
WP_014390749.1\|66488_66971_+\|tail	phage tail protein	A0A0M3LPR0	Mannheimia_phage	2.0e-44	62.0
WP_016533320.1\|67024_67696_+	hypothetical protein	A0A0M3LPR4	Mannheimia_phage	1.5e-42	42.9
WP_016533321.1\|67726_68191_+	hypothetical protein	A0A0M3LR40	Mannheimia_phage	5.2e-34	50.0
WP_016533322.1\|68258_68654_+	hypothetical protein	A0A0M3LR23	Mannheimia_phage	7.7e-55	83.2
WP_042743193.1\|68712_71157_+\|tail	tail length tape measure protein	A0A0M3LSE2	Mannheimia_phage	1.6e-150	57.0
WP_014390756.1\|71159_71489_+	Gifsy-1 prophage VmtM	S5MW28	Escherichia_phage	3.2e-14	37.1
WP_023430089.1\|71578_72292_+\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	2.1e-82	63.9
WP_064775607.1\|72296_73040_+	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	1.1e-83	60.0
WP_014667799.1\|72982_73603_+\|tail	tail assembly protein	A0A0M3LQC4	Mannheimia_phage	1.1e-52	57.4
WP_064775608.1\|73606_78610_+\|tail	phage tail protein	A0A0M3LQ61	Mannheimia_phage	1.2e-250	38.9
WP_064775609.1\|78657_78984_+	hypothetical protein	NA	NA	NA	NA
WP_064775610.1\|79123_80260_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	3.8e-123	58.0
WP_005720092.1\|80306_80723_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
WP_005723319.1\|81474_83619_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
81145:81190	attR	NA	NA	NA	NA
WP_005723318.1\|83702_84599_+	lipoprotein NlpI	NA	NA	NA	NA
WP_005754621.1\|84706_86539_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.8e-53	33.7
WP_014325701.1\|86638_87487_-	ModD protein	NA	NA	NA	NA
WP_014325702.1\|87504_88104_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	9.7e-17	33.5
WP_016504294.1\|88105_88903_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_014325704.1\|89755_91390_-	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	1.7e-188	68.6
WP_005717461.1\|91485_91776_-	co-chaperone GroES	A0A221S322	uncultured_virus	4.5e-12	40.0
WP_005717460.1\|91864_92335_-	membrane protein FxsA	NA	NA	NA	NA
WP_005723307.1\|92465_94037_-	AbgT family transporter	NA	NA	NA	NA
WP_014325705.1\|94365_95784_+	aspartate ammonia-lyase	NA	NA	NA	NA
WP_014325706.1\|95919_97989_-\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_005751822.1\|98018_98399_-	hypothetical protein	NA	NA	NA	NA
WP_014325707.1\|98529_99153_-	glutathione S-transferase	NA	NA	NA	NA
WP_014325708.1\|99170_99434_-	hypothetical protein	NA	NA	NA	NA
WP_005723293.1\|99464_100367_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_016504292.1\|100648_101902_+	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_005723289.1\|102012_102870_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_005717448.1\|103122_104136_+	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_005717447.1\|104206_104653_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_005717446.1\|104807_105269_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_005723284.1\|105370_106717_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_005723282.1\|106799_107051_+	YhdT family protein	NA	NA	NA	NA
WP_014325712.1\|107040_108474_+	sodium/pantothenate symporter	NA	NA	NA	NA
WP_005717441.1\|108616_109498_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_005723278.1\|109774_110779_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_005723276.1\|110759_111059_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_014325715.1\|111283_115177_+	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.7e-114	53.4
WP_014325716.1\|115592_116165_-	hypothetical protein	NA	NA	NA	NA
WP_014325717.1\|116178_117417_-	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	1.0e-12	25.6
WP_005720092.1\|118705_119122_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
WP_064775610.1\|119168_120305_+\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	3.8e-123	58.0
WP_016504262.1\|121743_124173_+	TonB-dependent receptor	NA	NA	NA	NA
WP_005723258.1\|124318_125056_-	ABC transporter ATP-binding protein	M1HP82	Acanthocystis_turfacea_Chlorella_virus	1.5e-14	32.5
WP_014325720.1\|125067_126012_-	iron ABC transporter permease	NA	NA	NA	NA
WP_005717426.1\|126024_126813_-	hemin ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014325721.1\|127120_127675_-	hypothetical protein	NA	NA	NA	NA
WP_014325722.1\|128155_129235_+	endonuclease	NA	NA	NA	NA
WP_010907004.1\|129324_130980_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	7.4e-83	34.9
WP_005723242.1\|131197_131752_-	DUF5358 domain-containing protein	NA	NA	NA	NA
WP_064775613.1\|133841_135503_+	putative transporter	NA	NA	NA	NA
WP_005723236.1\|135550_135841_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_014325723.1\|136085_137396_+	porin	NA	NA	NA	NA
WP_014325724.1\|137458_138001_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	4.8e-23	45.7
WP_014325725.1\|138010_138679_+	DNA mismatch repair endonuclease MutH	NA	NA	NA	NA
WP_005717387.1\|138744_139473_+	TerC family protein	A0A0R6PEZ3	Moraxella_phage	4.9e-31	38.1
WP_014325726.1\|139654_140119_+\|transposase	IS200/IS605 family transposase	A0A0A8WIU6	Clostridium_phage	2.3e-13	36.1

DBSCAN-SWA_2

1103887 : 1113245

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014326205.1\|1103887_1105162_+	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	1.8e-92	49.5
WP_005753554.1\|1105202_1105820_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_014326206.1\|1105819_1106707_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_064775639.1\|1106776_1107724_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.9e-43	38.7
WP_005753553.1\|1107799_1109353_-	murein DD-endopeptidase MepM	A0A2K9VGT1	Pontimonas_phage	8.4e-20	49.6
WP_010906540.1\|1109587_1110379_+	zinc ABC transporter ATP-binding protein ZnuC	A0A2K9L3Z8	Tupanvirus	3.7e-16	32.8
WP_005724066.1\|1110387_1111173_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_005724065.1\|1111249_1112230_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-15	26.4
WP_014326208.1\|1112246_1113245_-	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-15	29.4

DBSCAN-SWA_3

1464331 : 1520613

Mannheimia_phage(36.17%)

holin,capsid,transposase,integrase,tail,terminase

attL 1470211:1470261|attR 1521065:1521115

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014326374.1\|1464331_1467163_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	57.3
WP_005719438.1\|1467334_1467835_+	single-stranded DNA-binding protein	I3PUY5	Vibrio_phage	4.0e-40	55.6
WP_014325726.1\|1468017_1468482_+\|transposase	IS200/IS605 family transposase	A0A0A8WIU6	Clostridium_phage	2.3e-13	36.1
WP_005725034.1\|1469058_1469913_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	5.8e-31	40.3
1470211:1470261	attL	NA	NA	NA	NA
WP_014391441.1\|1470287_1471343_-\|integrase	site-specific integrase	A0A077KGX2	Edwardsiella_phage	1.6e-62	37.9
WP_075271365.1\|1471246_1471549_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014391442.1\|1471732_1472455_-	DNA-binding protein	G0ZND1	Cronobacter_phage	3.3e-35	52.5
WP_064775645.1\|1472465_1472687_-	hypothetical protein	NA	NA	NA	NA
WP_015691048.1\|1472931_1473840_-	hypothetical protein	A0A0M4S6X1	Salmonella_phage	2.5e-40	36.1
WP_064775646.1\|1473943_1474432_-	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	3.2e-34	51.2
WP_080637896.1\|1474443_1474656_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_016533502.1\|1474643_1475009_-	hypothetical protein	NA	NA	NA	NA
WP_064775647.1\|1475005_1475605_-	hypothetical protein	A0A218KC93	Bacillus_phage	3.9e-18	34.2
WP_014391448.1\|1475655_1476444_-	DUF2303 family protein	C5IHK3	Burkholderia_virus	3.2e-20	29.2
WP_016570064.1\|1476515_1476869_-	hypothetical protein	I6XKT1	Burkholderia_virus	1.7e-05	31.8
WP_016533530.1\|1476911_1477103_-	hypothetical protein	NA	NA	NA	NA
WP_016570065.1\|1477114_1477579_-	single-stranded DNA-binding protein	A0A2I7RK19	Vibrio_phage	6.1e-35	69.0
WP_064775601.1\|1477582_1478194_-	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	6.3e-88	76.4
WP_016533454.1\|1478186_1479038_-	phage recombination protein Bet	A0A2H4JAQ4	uncultured_Caudovirales_phage	4.8e-62	63.9
WP_016570067.1\|1479041_1480028_-	hypothetical protein	A0A0M3LR66	Mannheimia_phage	5.8e-51	39.9
WP_016570068.1\|1480205_1480442_-	hypothetical protein	NA	NA	NA	NA
WP_064775602.1\|1480428_1480713_-	hypothetical protein	NA	NA	NA	NA
WP_014390710.1\|1480779_1481091_+	hypothetical protein	NA	NA	NA	NA
WP_016569990.1\|1481152_1481788_-	antirepressor	A6XMM0	Bacillus_virus	2.1e-22	53.3
WP_014391102.1\|1482249_1482783_-	hypothetical protein	NA	NA	NA	NA
WP_014391456.1\|1482870_1483134_-	hypothetical protein	NA	NA	NA	NA
WP_016533507.1\|1483358_1483589_-	hypothetical protein	A0A0M3LNV4	Mannheimia_phage	3.4e-10	52.8
WP_016533476.1\|1484207_1484591_-	hypothetical protein	NA	NA	NA	NA
WP_016533477.1\|1484587_1485067_-	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	8.3e-19	47.1
WP_016533478.1\|1485069_1485333_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_064775603.1\|1485478_1486168_-	helix-turn-helix transcriptional regulator	Q7Y5W5	Haemophilus_phage	1.7e-73	58.2
WP_005720263.1\|1486295_1486505_+	helix-turn-helix transcriptional regulator	A0A077K9X2	Edwardsiella_phage	5.5e-12	52.3
WP_014391093.1\|1486573_1486801_+	hypothetical protein	NA	NA	NA	NA
WP_064775604.1\|1486858_1487560_+	DNA-binding protein	A0A2I7RHG4	Vibrio_phage	7.1e-35	55.8
WP_014390722.1\|1487556_1487910_+	HNH endonuclease	A0A1C9LVX4	Vibrio_phage	1.3e-08	33.6
WP_016533442.1\|1487911_1488814_+	hypothetical protein	A0A0U4JX08	Bacillus_phage	5.5e-32	37.7
WP_016533441.1\|1488813_1489503_+	replication protein P	D0UIL4	Aggregatibacter_phage	1.4e-32	34.1
WP_041423202.1\|1489512_1490043_+	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	1.0e-54	58.9
WP_016569985.1\|1490032_1490491_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	5.8e-38	53.4
WP_016533468.1\|1490564_1490777_+	hypothetical protein	NA	NA	NA	NA
WP_064775605.1\|1490864_1491467_+	recombinase NinG	H6WRY9	Salmonella_phage	6.3e-32	38.2
WP_016533470.1\|1491466_1491832_+	hypothetical protein	A0A0M3LR87	Mannheimia_phage	3.5e-09	27.3
WP_143930513.1\|1492021_1492207_+	hypothetical protein	NA	NA	NA	NA
WP_016533461.1\|1492420_1492786_+\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_016533462.1\|1492757_1493342_+	glycoside hydrolase family 19 protein	Q7Y5V0	Haemophilus_phage	6.5e-58	55.3
WP_016569983.1\|1493344_1493668_+	DUF2570 family protein	NA	NA	NA	NA
WP_064775648.1\|1493946_1494303_+	hypothetical protein	NA	NA	NA	NA
WP_064775649.1\|1494432_1494687_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_064775650.1\|1494674_1495055_-	hypothetical protein	NA	NA	NA	NA
WP_064775651.1\|1495193_1495895_+	hypothetical protein	NA	NA	NA	NA
WP_016533416.1\|1495881_1496310_+	hypothetical protein	NA	NA	NA	NA
WP_081273988.1\|1496625_1497216_+	hypothetical protein	A0A2H4J1J5	uncultured_Caudovirales_phage	4.9e-21	39.5
WP_064775652.1\|1497218_1498490_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	8.6e-148	61.7
WP_064775653.1\|1498499_1499903_+	DUF4055 domain-containing protein	A0A0M3LQA1	Mannheimia_phage	4.4e-153	59.6
WP_064775738.1\|1499892_1501494_+\|capsid	minor capsid protein	A0A0M3LQ07	Mannheimia_phage	3.3e-152	52.1
WP_015691070.1\|1501496_1501715_+	hypothetical protein	NA	NA	NA	NA
WP_015691071.1\|1501689_1502124_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	D0UIJ3	Aggregatibacter_phage	3.1e-41	61.2
WP_015691073.1\|1502459_1503230_+	hypothetical protein	A0A1V0DY60	Dinoroseobacter_phage	1.5e-25	36.2
WP_015691074.1\|1503247_1504405_+	hypothetical protein	G8C7P7	Escherichia_phage	8.3e-81	43.3
WP_015691075.1\|1504461_1504698_+	hypothetical protein	NA	NA	NA	NA
WP_015691076.1\|1504714_1505182_+	hypothetical protein	A0A0M3LSP7	Mannheimia_phage	1.4e-34	55.7
WP_015691077.1\|1505183_1505558_+	hypothetical protein	NA	NA	NA	NA
WP_015691078.1\|1505559_1505961_+	HK97 gp10 family phage protein	A0A0M3LPJ5	Mannheimia_phage	2.1e-39	61.4
WP_015691079.1\|1505960_1506353_+	hypothetical protein	A0A0M3LQB6	Mannheimia_phage	5.5e-29	46.2
WP_016533104.1\|1506365_1507382_+	hypothetical protein	A0A0M3LQ19	Mannheimia_phage	7.6e-131	69.9
WP_016533103.1\|1507454_1507871_+	hypothetical protein	NA	NA	NA	NA
WP_016533102.1\|1508240_1508570_+\|tail	phage tail protein	A0A0M3LQW6	Mannheimia_phage	4.8e-26	49.1
WP_064775655.1\|1508874_1509570_+	hypothetical protein	NA	NA	NA	NA
WP_064775657.1\|1512403_1513108_+\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	1.6e-82	64.1
WP_064775658.1\|1513110_1513851_+	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	1.3e-84	60.0
WP_042743292.1\|1513793_1514384_+\|tail	tail assembly protein	A0A0M3LQC4	Mannheimia_phage	3.1e-52	57.1
WP_064775659.1\|1514387_1518500_+\|tail	phage tail protein	A0A0M3LQG1	Mannheimia_phage	9.3e-236	40.6
WP_064775609.1\|1518547_1518874_+	hypothetical protein	NA	NA	NA	NA
WP_064775610.1\|1519013_1520150_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	3.8e-123	58.0
WP_005720092.1\|1520196_1520613_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
1521065:1521115	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2265543 : 2338167

Vibrio_phage(22.58%)

plate,head,transposase,integrase,tail,tRNA

attL 2283355:2283369|attR 2298992:2299006

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005723723.1\|2265543_2266575_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.1e-111	58.6
WP_005717662.1\|2266595_2266832_+	hypothetical protein	NA	NA	NA	NA
WP_005717659.1\|2266833_2267412_+	thymidine kinase	A0A1Z1LZ42	Serratia_phage	2.4e-52	52.1
WP_015702704.1\|2267499_2268855_-	glutathione-disulfide reductase	NA	NA	NA	NA
WP_015702705.1\|2268951_2269797_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_015702706.1\|2269957_2270539_-	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA	NA	NA	NA
WP_015702707.1\|2270541_2271429_-	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA
WP_016504289.1\|2271539_2272952_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_015702709.1\|2272983_2275545_-	penicillin-binding protein 1A	NA	NA	NA	NA
WP_015702710.1\|2275680_2276454_+	pilus assembly protein PilM	NA	NA	NA	NA
WP_015702711.1\|2276493_2277009_+	hypothetical protein	NA	NA	NA	NA
WP_005751903.1\|2277008_2277533_+	hypothetical protein	NA	NA	NA	NA
WP_015702712.1\|2277535_2277898_+	protein ComD	NA	NA	NA	NA
WP_015702713.1\|2277907_2279242_+	type IV pilus secretin PilQ	NA	NA	NA	NA
WP_005717623.1\|2279424_2279952_+	shikimate kinase AroK	NA	NA	NA	NA
WP_005754750.1\|2279968_2281057_+	3-dehydroquinate synthase	NA	NA	NA	NA
WP_005723696.1\|2281060_2281966_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S6L1V5	Vibrio_phage	1.8e-62	48.9
WP_005723691.1\|2282012_2282318_-	DUF721 domain-containing protein	NA	NA	NA	NA
WP_005723689.1\|2282410_2282722_+	DUF2547 family protein	NA	NA	NA	NA
WP_005754746.1\|2282805_2285493_+	preprotein translocase subunit SecA	NA	NA	NA	NA
2283355:2283369	attL	NA	NA	NA	NA
WP_005717611.1\|2285585_2285987_+	8-oxo-dGTP diphosphatase MutT	NA	NA	NA	NA
WP_005717609.1\|2286052_2286319_-	DUF5339 domain-containing protein	NA	NA	NA	NA
WP_016533093.1\|2286447_2287527_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_005723681.1\|2287526_2288030_-	hypothetical protein	NA	NA	NA	NA
WP_016533094.1\|2288085_2290668_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	4.5e-188	41.9
WP_064775695.1\|2290876_2293171_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_005717653.1\|2294112_2294958_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_064775740.1\|2295272_2296271_+\|integrase	site-specific integrase	Q19US1	Mannheimia_phage	1.7e-106	60.7
WP_005723677.1\|2296415_2296721_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_005723675.1\|2296730_2297084_-	mercuric transporter MerT	NA	NA	NA	NA
WP_064775696.1\|2297055_2298108_-	transglutaminase family protein	NA	NA	NA	NA
WP_016570130.1\|2298292_2298472_-	hypothetical protein	NA	NA	NA	NA
WP_064775698.1\|2301003_2301570_-\|tail	phage tail protein	Q6QI98	Burkholderia_phage	5.3e-41	46.4
2298992:2299006	attR	NA	NA	NA	NA
WP_064775699.1\|2301562_2302675_-\|plate	baseplate J/gp47 family protein	A4JWL6	Burkholderia_virus	3.6e-57	35.6
WP_064775741.1\|2302664_2303030_-\|plate	phage baseplate protein	NA	NA	NA	NA
WP_064775700.1\|2303082_2303664_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_064775701.1\|2303678_2304731_-	hypothetical protein	A4JWL3	Burkholderia_virus	2.1e-59	40.3
WP_064775702.1\|2304730_2304952_-	hypothetical protein	Q6QIA3	Burkholderia_phage	8.5e-11	43.3
WP_064775703.1\|2304939_2305890_-\|tail	phage tail protein	NA	NA	NA	NA
WP_064775704.1\|2305898_2308202_-\|tail	phage tail tape measure protein	K4ICR4	Acidithiobacillus_phage	4.2e-68	38.1
WP_064775705.1\|2308241_2308433_+	hypothetical protein	NA	NA	NA	NA
WP_075284997.1\|2308429_2308552_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_064775706.1\|2308578_2308857_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_064775707.1\|2308939_2309455_-\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_101766767.1\|2309454_2310849_-\|tail	phage tail protein	A4JWK5	Burkholderia_virus	5.1e-109	47.3
WP_064775709.1\|2310855_2311323_-	hypothetical protein	NA	NA	NA	NA
WP_064775710.1\|2311322_2311772_-	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_064775711.1\|2311771_2312230_-	hypothetical protein	NA	NA	NA	NA
WP_064775712.1\|2312282_2313209_-	hypothetical protein	A4JWK0	Burkholderia_virus	1.7e-76	49.3
WP_064775713.1\|2313218_2314322_-	hypothetical protein	A4JWJ9	Burkholderia_virus	3.3e-71	41.8
WP_064775714.1\|2314558_2315014_-	phage virion morphogenesis protein	NA	NA	NA	NA
WP_064775715.1\|2315215_2315404_-	hypothetical protein	NA	NA	NA	NA
WP_064775742.1\|2315540_2316806_-\|head	phage head morphogenesis protein	J9STS2	Pseudomonas_phage	3.1e-65	44.4
WP_151202333.1\|2316807_2318250_-	DUF935 family protein	Q6QIC0	Burkholderia_phage	2.6e-116	53.5
WP_064775743.1\|2318245_2319718_-	hypothetical protein	M1NVQ0	Vibrio_phage	6.0e-161	62.1
WP_064775717.1\|2319804_2320386_-	DUF3486 family protein	A0A2I7S9D1	Vibrio_phage	2.4e-36	44.5
WP_064775718.1\|2320408_2320711_-	hypothetical protein	A0A0C4UR00	Shigella_phage	2.2e-25	60.4
WP_064775719.1\|2320707_2321037_-	DUF2730 family protein	NA	NA	NA	NA
WP_064775721.1\|2321154_2321415_-	DUF2681 domain-containing protein	NA	NA	NA	NA
WP_064775722.1\|2321411_2321639_-	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	6.0e-20	72.4
WP_064775723.1\|2321649_2322186_-	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	1.1e-72	69.1
WP_064775724.1\|2322263_2322626_-	hypothetical protein	NA	NA	NA	NA
WP_064775725.1\|2322700_2323075_-	transcriptional regulator	Q6QIE8	Burkholderia_phage	3.3e-23	46.2
WP_064775726.1\|2323074_2323620_-	hypothetical protein	A0A0M3LPP6	Mannheimia_phage	1.8e-38	44.1
WP_064775727.1\|2323616_2324123_-	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	5.0e-14	32.7
WP_064775728.1\|2324196_2324898_-	DUF2786 domain-containing protein	L7P7W8	Pseudomonas_phage	3.9e-17	30.6
WP_061406041.1\|2324906_2325122_-	hypothetical protein	NA	NA	NA	NA
WP_061406042.1\|2325139_2325331_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_061406043.1\|2325408_2325927_-	host-nuclease inhibitor protein Gam	C9DGL8	Escherichia_phage	2.3e-54	64.3
WP_046339044.1\|2325919_2326159_-	hypothetical protein	NA	NA	NA	NA
WP_064775729.1\|2326368_2326614_-	hypothetical protein	NA	NA	NA	NA
WP_064775730.1\|2326634_2326838_-	hypothetical protein	NA	NA	NA	NA
WP_016533375.1\|2326837_2327755_-	AAA family ATPase	A0A2I7S9C3	Vibrio_phage	2.3e-62	43.4
WP_064775731.1\|2327781_2329785_-\|transposase	transposase	M4M9R2	Vibrio_phage	1.0e-94	35.2
WP_064775732.1\|2329768_2330005_-	transcriptional regulator	M1PVU4	Vibrio_phage	3.7e-12	57.1
WP_081273992.1\|2330244_2330718_+	ci repressor-like protein	NA	NA	NA	NA
WP_064775694.1\|2332893_2334762_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	4.5e-36	33.8
WP_005751910.1\|2334837_2336586_-	DNA primase	A0A1S5RF71	Helicobacter_phage	1.1e-41	32.6
WP_005717672.1\|2336701_2336917_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_005723723.1\|2337135_2338167_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.1e-111	58.6

Anti-CRISPR protein detection

Acr_ID: NZ_CP006976.1|WP_075284997.1|2308429_2308552_-|GpE-family-phage-tail-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP006976.1|WP_075284997.1|2308429_2308552_-|GpE-family-phage-tail-protein

2308429_2308552_-

40 aa aa

2265543-2338167

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP006976_3	Unclear	3.13\|1611379\|32\|NZ_CP006976\|CRISPRCasFinder,CRT,PILER-CR	1611379-1611410	32	2300167-2300198	2

1. spacer 3.13|1611379|32|NZ_CP006976|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006976 position: 2300167-2300198, mismatch: 2

attcaatccccccaacacctgaaagaaataat	CRISPR spacer
attcaatccccccaacacccgagagaaataat	Protospacer
*******************.**.*********

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP006976

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information