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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015576 Campylobacter hyointestinalis subsp. lawsonii CCUG 27631 chromosome, complete genome 1 crisprs csa3,DEDDh,WYL,cas4 0 1 3 0

Results visualization

1. NZ_CP015576
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015576_1 650501-650599 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015576_1 1.1|650534|33|NZ_CP015576|CRISPRCasFinder 650534-650566 33 NZ_LR214939 Mycoplasma salivarium strain NCTC10113 plasmid 2 566706-566738 8 0.758
NZ_CP015576_1 1.1|650534|33|NZ_CP015576|CRISPRCasFinder 650534-650566 33 KX513865 Human gut gokushovirus isolate SH-CHD2, complete genome 4632-4664 8 0.758
NZ_CP015576_1 1.1|650534|33|NZ_CP015576|CRISPRCasFinder 650534-650566 33 NZ_CP037749 Campylobacter helveticus strain 2013D-9613 plasmid unnamed1 47537-47569 10 0.697
NZ_CP015576_1 1.1|650534|33|NZ_CP015576|CRISPRCasFinder 650534-650566 33 NZ_CP020479 Campylobacter helveticus strain ATCC 51209 plasmid pHELV-1, complete sequence 19468-19500 10 0.697

1. spacer 1.1|650534|33|NZ_CP015576|CRISPRCasFinder matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 8, identity: 0.758

ttaaatttgtttaatattccaaattttcgctga	CRISPR spacer
ctaaatttgtttaatataccaaatttaaatcta	Protospacer
.**************** ********  ... *

2. spacer 1.1|650534|33|NZ_CP015576|CRISPRCasFinder matches to KX513865 (Human gut gokushovirus isolate SH-CHD2, complete genome) position: , mismatch: 8, identity: 0.758

ttaaatttgtttaatattccaaattttcgctga	CRISPR spacer
atcaatttgtttaatattcaaacttttatttaa	Protospacer
 * **************** ** ****  .*.*

3. spacer 1.1|650534|33|NZ_CP015576|CRISPRCasFinder matches to NZ_CP037749 (Campylobacter helveticus strain 2013D-9613 plasmid unnamed1) position: , mismatch: 10, identity: 0.697

ttaaatttgtttaatattccaaattttcgctga	CRISPR spacer
cctaatttgtttaatattcgtaattttaccatt	Protospacer
.. ****************  ******  *   

4. spacer 1.1|650534|33|NZ_CP015576|CRISPRCasFinder matches to NZ_CP020479 (Campylobacter helveticus strain ATCC 51209 plasmid pHELV-1, complete sequence) position: , mismatch: 10, identity: 0.697

ttaaatttgtttaatattccaaattttcgctga	CRISPR spacer
cctaatttgtttaatattcgtaattttaccatt	Protospacer
.. ****************  ******  *   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 309499 : 351523 60 Campylobacter_phage(35.0%) tRNA,plate,capsid,tail,transposase,terminase,integrase attL 303269:303285|attR 326877:326893
DBSCAN-SWA_2 794501 : 804038 10 Pseudomonas_phage(14.29%) NA NA
DBSCAN-SWA_3 943616 : 957534 26 Campylobacter_phage(30.77%) integrase attL 955342:955358|attR 966502:966518
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage