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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015377 Pseudomonas aeruginosa strain BAMCPA07-48, complete genome 5 crisprs csa3,DEDDh,cas3,RT,PD-DExK,DinG,WYL 0 7 12 0

Results visualization

1. NZ_CP015377
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015377_1 711178-711342 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015377_2 2011395-2011492 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015377_3 2427462-2427575 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015377_4 6981408-6981505 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015377_5 6991531-6991695 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP015377_1 1.1|711201|21|NZ_CP015377|CRISPRCasFinder 711201-711221 21 NC_016138 Pseudomonas aeruginosa plasmid pUM505, complete sequence 1068-1088 0 1.0
NZ_CP015377_1 1.1|711201|21|NZ_CP015377|CRISPRCasFinder 711201-711221 21 NC_019202 Pseudomonas aeruginosa plasmid pKLC102, complete sequence 13811-13831 0 1.0
NZ_CP015377_1 1.3|711299|21|NZ_CP015377|CRISPRCasFinder 711299-711319 21 NC_019202 Pseudomonas aeruginosa plasmid pKLC102, complete sequence 13909-13929 0 1.0
NZ_CP015377_1 1.3|711299|21|NZ_CP015377|CRISPRCasFinder 711299-711319 21 NC_016138 Pseudomonas aeruginosa plasmid pUM505, complete sequence 970-990 0 1.0
NZ_CP015377_4 4.1|6981431|52|NZ_CP015377|CRISPRCasFinder 6981431-6981482 52 NC_016138 Pseudomonas aeruginosa plasmid pUM505, complete sequence 10884-10935 0 1.0
NZ_CP015377_5 5.1|6991554|21|NZ_CP015377|CRISPRCasFinder 6991554-6991574 21 NC_016138 Pseudomonas aeruginosa plasmid pUM505, complete sequence 1068-1088 0 1.0
NZ_CP015377_5 5.1|6991554|21|NZ_CP015377|CRISPRCasFinder 6991554-6991574 21 NC_019202 Pseudomonas aeruginosa plasmid pKLC102, complete sequence 13811-13831 0 1.0
NZ_CP015377_5 5.3|6991652|21|NZ_CP015377|CRISPRCasFinder 6991652-6991672 21 NC_019202 Pseudomonas aeruginosa plasmid pKLC102, complete sequence 13909-13929 0 1.0
NZ_CP015377_5 5.3|6991652|21|NZ_CP015377|CRISPRCasFinder 6991652-6991672 21 NC_016138 Pseudomonas aeruginosa plasmid pUM505, complete sequence 970-990 0 1.0
NZ_CP015377_1 1.1|711201|21|NZ_CP015377|CRISPRCasFinder 711201-711221 21 NZ_CP030914 Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence 25226-25246 1 0.952
NZ_CP015377_1 1.2|711245|31|NZ_CP015377|CRISPRCasFinder 711245-711275 31 NC_016138 Pseudomonas aeruginosa plasmid pUM505, complete sequence 1014-1044 1 0.968
NZ_CP015377_1 1.2|711245|31|NZ_CP015377|CRISPRCasFinder 711245-711275 31 NZ_CP030914 Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence 25270-25300 1 0.968
NZ_CP015377_1 1.2|711245|31|NZ_CP015377|CRISPRCasFinder 711245-711275 31 NC_019202 Pseudomonas aeruginosa plasmid pKLC102, complete sequence 13855-13885 1 0.968
NZ_CP015377_5 5.1|6991554|21|NZ_CP015377|CRISPRCasFinder 6991554-6991574 21 NZ_CP030914 Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence 25226-25246 1 0.952
NZ_CP015377_5 5.2|6991598|31|NZ_CP015377|CRISPRCasFinder 6991598-6991628 31 NC_016138 Pseudomonas aeruginosa plasmid pUM505, complete sequence 1014-1044 1 0.968
NZ_CP015377_5 5.2|6991598|31|NZ_CP015377|CRISPRCasFinder 6991598-6991628 31 NZ_CP030914 Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence 25270-25300 1 0.968
NZ_CP015377_5 5.2|6991598|31|NZ_CP015377|CRISPRCasFinder 6991598-6991628 31 NC_019202 Pseudomonas aeruginosa plasmid pKLC102, complete sequence 13855-13885 1 0.968
NZ_CP015377_1 1.2|711245|31|NZ_CP015377|CRISPRCasFinder 711245-711275 31 NZ_CP036407 Komagataeibacter saccharivorans strain JH1 plasmid p92689, complete sequence 31172-31202 9 0.71
NZ_CP015377_5 5.2|6991598|31|NZ_CP015377|CRISPRCasFinder 6991598-6991628 31 NZ_CP036407 Komagataeibacter saccharivorans strain JH1 plasmid p92689, complete sequence 31172-31202 9 0.71
NZ_CP015377_1 1.2|711245|31|NZ_CP015377|CRISPRCasFinder 711245-711275 31 NZ_CP045351 Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence 1090068-1090098 10 0.677
NZ_CP015377_5 5.2|6991598|31|NZ_CP015377|CRISPRCasFinder 6991598-6991628 31 NZ_CP045351 Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence 1090068-1090098 10 0.677

1. spacer 1.1|711201|21|NZ_CP015377|CRISPRCasFinder matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 0, identity: 1.0

cccgatctacctcattcaacc	CRISPR spacer
cccgatctacctcattcaacc	Protospacer
*********************

2. spacer 1.1|711201|21|NZ_CP015377|CRISPRCasFinder matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 0, identity: 1.0

cccgatctacctcattcaacc	CRISPR spacer
cccgatctacctcattcaacc	Protospacer
*********************

3. spacer 1.3|711299|21|NZ_CP015377|CRISPRCasFinder matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 0, identity: 1.0

acagaatccgccgagtacgcc	CRISPR spacer
acagaatccgccgagtacgcc	Protospacer
*********************

4. spacer 1.3|711299|21|NZ_CP015377|CRISPRCasFinder matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 0, identity: 1.0

acagaatccgccgagtacgcc	CRISPR spacer
acagaatccgccgagtacgcc	Protospacer
*********************

5. spacer 4.1|6981431|52|NZ_CP015377|CRISPRCasFinder matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 0, identity: 1.0

tacgccatggaactgcggcatgaaggggcttctcgcgcgaggacgctcgtcg	CRISPR spacer
tacgccatggaactgcggcatgaaggggcttctcgcgcgaggacgctcgtcg	Protospacer
****************************************************

6. spacer 5.1|6991554|21|NZ_CP015377|CRISPRCasFinder matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 0, identity: 1.0

cccgatctacctcattcaacc	CRISPR spacer
cccgatctacctcattcaacc	Protospacer
*********************

7. spacer 5.1|6991554|21|NZ_CP015377|CRISPRCasFinder matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 0, identity: 1.0

cccgatctacctcattcaacc	CRISPR spacer
cccgatctacctcattcaacc	Protospacer
*********************

8. spacer 5.3|6991652|21|NZ_CP015377|CRISPRCasFinder matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 0, identity: 1.0

acagaatccgccgagtacgcc	CRISPR spacer
acagaatccgccgagtacgcc	Protospacer
*********************

9. spacer 5.3|6991652|21|NZ_CP015377|CRISPRCasFinder matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 0, identity: 1.0

acagaatccgccgagtacgcc	CRISPR spacer
acagaatccgccgagtacgcc	Protospacer
*********************

10. spacer 1.1|711201|21|NZ_CP015377|CRISPRCasFinder matches to NZ_CP030914 (Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence) position: , mismatch: 1, identity: 0.952

cccgatctacctcattcaacc	CRISPR spacer
cccgatctaccccattcaacc	Protospacer
***********.*********

11. spacer 1.2|711245|31|NZ_CP015377|CRISPRCasFinder matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 1, identity: 0.968

tgaaaccagcggcaagcaatgcgctttaccg	CRISPR spacer
tgaaatcagcggcaagcaatgcgctttaccg	Protospacer
*****.*************************

12. spacer 1.2|711245|31|NZ_CP015377|CRISPRCasFinder matches to NZ_CP030914 (Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence) position: , mismatch: 1, identity: 0.968

tgaaaccagcggcaagcaatgcgctttaccg	CRISPR spacer
tgaaatcagcggcaagcaatgcgctttaccg	Protospacer
*****.*************************

13. spacer 1.2|711245|31|NZ_CP015377|CRISPRCasFinder matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 1, identity: 0.968

tgaaaccagcggcaagcaatgcgctttaccg	CRISPR spacer
tgaaatcagcggcaagcaatgcgctttaccg	Protospacer
*****.*************************

14. spacer 5.1|6991554|21|NZ_CP015377|CRISPRCasFinder matches to NZ_CP030914 (Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence) position: , mismatch: 1, identity: 0.952

cccgatctacctcattcaacc	CRISPR spacer
cccgatctaccccattcaacc	Protospacer
***********.*********

15. spacer 5.2|6991598|31|NZ_CP015377|CRISPRCasFinder matches to NC_016138 (Pseudomonas aeruginosa plasmid pUM505, complete sequence) position: , mismatch: 1, identity: 0.968

tgaaaccagcggcaagcaatgcgctttaccg	CRISPR spacer
tgaaatcagcggcaagcaatgcgctttaccg	Protospacer
*****.*************************

16. spacer 5.2|6991598|31|NZ_CP015377|CRISPRCasFinder matches to NZ_CP030914 (Pseudomonas aeruginosa strain Y89 plasmid pY89, complete sequence) position: , mismatch: 1, identity: 0.968

tgaaaccagcggcaagcaatgcgctttaccg	CRISPR spacer
tgaaatcagcggcaagcaatgcgctttaccg	Protospacer
*****.*************************

17. spacer 5.2|6991598|31|NZ_CP015377|CRISPRCasFinder matches to NC_019202 (Pseudomonas aeruginosa plasmid pKLC102, complete sequence) position: , mismatch: 1, identity: 0.968

tgaaaccagcggcaagcaatgcgctttaccg	CRISPR spacer
tgaaatcagcggcaagcaatgcgctttaccg	Protospacer
*****.*************************

18. spacer 1.2|711245|31|NZ_CP015377|CRISPRCasFinder matches to NZ_CP036407 (Komagataeibacter saccharivorans strain JH1 plasmid p92689, complete sequence) position: , mismatch: 9, identity: 0.71

tgaaaccagcggcaagcaatgcgctttaccg	CRISPR spacer
ccatcccagcggcaggcaatgcgctttcatc	Protospacer
. *  *********.************  . 

19. spacer 5.2|6991598|31|NZ_CP015377|CRISPRCasFinder matches to NZ_CP036407 (Komagataeibacter saccharivorans strain JH1 plasmid p92689, complete sequence) position: , mismatch: 9, identity: 0.71

tgaaaccagcggcaagcaatgcgctttaccg	CRISPR spacer
ccatcccagcggcaggcaatgcgctttcatc	Protospacer
. *  *********.************  . 

20. spacer 1.2|711245|31|NZ_CP015377|CRISPRCasFinder matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 10, identity: 0.677

tgaaaccagcggcaagcaatgcgctttaccg	CRISPR spacer
ggaaacaagcgccaagcaatgcgcgaccata	Protospacer
 ***** **** ************  .  ..

21. spacer 5.2|6991598|31|NZ_CP015377|CRISPRCasFinder matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 10, identity: 0.677

tgaaaccagcggcaagcaatgcgctttaccg	CRISPR spacer
ggaaacaagcgccaagcaatgcgcgaccata	Protospacer
 ***** **** ************  .  ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 329962 : 337127 10 Pseudomonas_phage(100.0%) integrase,coat attL 329606:329636|attR 340955:340985
DBSCAN-SWA_2 803142 : 833484 28 Salmonella_phage(50.0%) bacteriocin,integrase,transposase attL 808195:808211|attR 812300:812316
DBSCAN-SWA_3 1541364 : 1625492 92 Pseudomonas_virus(75.0%) tRNA,portal,protease,plate,tail,capsid,head,terminase,integrase,holin attL 1572053:1572069|attR 1633756:1633772
DBSCAN-SWA_4 2080717 : 2154920 58 uncultured_virus(20.0%) transposase,tRNA,holin NA
DBSCAN-SWA_5 2721953 : 2809611 87 Pseudomonas_phage(37.5%) tRNA,tail,transposase,plate,holin NA
DBSCAN-SWA_6 3513085 : 3628108 117 Pseudomonas_phage(53.23%) tRNA,portal,protease,tail,capsid,head,lysis,terminase,integrase,holin attL 3533647:3533665|attR 3581693:3581711
DBSCAN-SWA_7 3715766 : 3763811 66 Pseudomonas_phage(85.71%) portal,protease,tail,capsid,head,transposase,terminase,integrase,holin attL 3720991:3721049|attR 3764430:3764488
DBSCAN-SWA_8 4892842 : 4899736 9 uncultured_Caudovirales_phage(83.33%) tRNA NA
DBSCAN-SWA_9 4926729 : 4985397 71 Pseudomonas_phage(73.44%) terminase,integrase,holin,tail attL 4930649:4930708|attR 4985624:4985715
DBSCAN-SWA_10 5763614 : 5783858 30 Pseudomonas_phage(76.92%) tail NA
DBSCAN-SWA_11 5787120 : 5803700 25 Pseudomonas_phage(63.64%) integrase attL 5788548:5788563|attR 5805553:5805568
DBSCAN-SWA_12 6022157 : 6074515 54 Pseudomonas_phage(57.45%) terminase,integrase,tRNA attL 6005223:6005239|attR 6069301:6069317
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage