CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013912	Staphylococcus haemolyticus strain S167 plasmid pSH108, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP013911	Staphylococcus haemolyticus strain S167 chromosome, complete genome	3 crisprs	cas3,DEDDh,DinG,csa3,WYL	0	31	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013911_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013911_1

645558-645644

Orphan

Consensus_repeat	Method
CCCAGCAAAGAGAATTTCACATGGAAATTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013911_1

>merge|NZ_CP013911|1|645558-645644|CRISPRCasFinder
CCCAGCAAAGAGAATTTCACATGGAAATTCCACAAGCAAAGCAGGCTGGGGTTGGGGCCCAGCAGAGAGAATTTCACATGGAAATTC

>NZ_CP013911|1|1|645558-645644|CRISPRCasFinder
CCCAGCAAAGAGAATTTCACATGGAAATTC	CACAAGCAAAGCAGGCTGGGGTTGGGG
CCCAGCAGAGAGAATTTCACATGGAAATTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013911.1\|WP_016931167.1\|635301_635874_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP013911.1\|WP_011276247.1\|645764_646166_+\|YisL-family-protein	unknown	unknown	gnl\|CDD\|237465
NZ_CP013911.1\|WP_033079768.1\|657123_657501_-\|DUF3899-domain-containing-protein	unknown	unknown	gnl\|CDD\|372441
NZ_CP013911.1\|WP_011276239.1\|655806_657051_+\|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|274452
NZ_CP013911.1\|WP_011276253.1\|635878_636403_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP013911.1\|WP_033079770.1\|648668_648977_+\|metal-sulfur-cluster-assembly-factor	unknown	unknown	gnl\|CDD\|225062
NZ_CP013911.1\|WP_011276252.1\|636417_636990_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP013911.1\|WP_011276243.1\|649423_651250_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP013911.1\|WP_011276241.1\|654451_654646_-\|YjzD-family-protein	unknown	unknown	gnl\|CDD\|371396
NZ_CP013911.1\|WP_053022716.1\|640633_644311_+\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NZ_CP013911.1\|WP_053015824.1\|651543_654153_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP013911.1\|WP_016931166.1\|632204_633407_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP013911.1\|WP_011276240.1\|654851_655793_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NZ_CP013911.1\|WP_053022719.1\|647643_648468_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP013911.1\|WP_011276257.1\|630829_632212_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP013911.1\|WP_053027542.1\|646239_647562_-\|CoA-disulfide-reductase	unknown	unknown	gnl\|CDD\|184103
NZ_CP013911.1\|WP_016931165.1\|629679_630642_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
NZ_CP013911.1\|WP_062931946.1\|637152_640641_+\|helicase-exonuclease-AddAB-subunit-AddB	unknown	unknown	gnl\|CDD\|213736
NZ_CP013911.1\|WP_011276255.1\|633740_635072_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504
NZ_CP013911.1\|WP_033079771.1\|644436_645342_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257

Protein	Function_ID	Function_description	E-value
NZ_CP013911.1\|WP_016931167.1\|635301_635874_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	2.23065e-27
NZ_CP013911.1\|WP_011276247.1\|645764_646166_+\|YisL-family-protein	gnl\|CDD\|237465	PRK13673, PRK13673, hypothetical protein; Provisional.	9.78366e-34
NZ_CP013911.1\|WP_033079768.1\|657123_657501_-\|DUF3899-domain-containing-protein	gnl\|CDD\|372441	pfam13038, DUF3899, Domain of unknown function (DUF3899). Putative Tryptophanyl-tRNA synthetase.	5.68363e-13
NZ_CP013911.1\|WP_011276239.1\|655806_657051_+\|beta-ketoacyl-ACP-synthase-II	gnl\|CDD\|274452	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. 3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NZ_CP013911.1\|WP_011276253.1\|635878_636403_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.23511e-34
NZ_CP013911.1\|WP_033079770.1\|648668_648977_+\|metal-sulfur-cluster-assembly-factor	gnl\|CDD\|225062	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only].	4.83853e-41
NZ_CP013911.1\|WP_011276252.1\|636417_636990_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.60968e-52
NZ_CP013911.1\|WP_011276243.1\|649423_651250_+\|acetyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	2.63283e-79
NZ_CP013911.1\|WP_011276241.1\|654451_654646_-\|YjzD-family-protein	gnl\|CDD\|371396	pfam11151, DUF2929, Protein of unknown function (DUF2929). This family of proteins with unknown function appears to be restricted to Firmicutes.	3.7724e-11
NZ_CP013911.1\|WP_053022716.1\|640633_644311_+\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP013911.1\|WP_053015824.1\|651543_654153_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP013911.1\|WP_016931166.1\|632204_633407_-\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP013911.1\|WP_011276240.1\|654851_655793_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	0
NZ_CP013911.1\|WP_053022719.1\|647643_648468_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.2819e-78
NZ_CP013911.1\|WP_011276257.1\|630829_632212_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP013911.1\|WP_053027542.1\|646239_647562_-\|CoA-disulfide-reductase	gnl\|CDD\|184103	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.	0
NZ_CP013911.1\|WP_016931165.1\|629679_630642_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	4.11104e-138
NZ_CP013911.1\|WP_062931946.1\|637152_640641_+\|helicase-exonuclease-AddAB-subunit-AddB	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP013911.1\|WP_011276255.1\|633740_635072_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP013911.1\|WP_033079771.1\|644436_645342_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.58675e-86

>NZ_CP013911.1|WP_033079771.1|644436_645342_+|fumarylacetoacetate-hydrolase-family-protein
MKFLSFNYKDAESYGVKVKREDAVWDLKKVFAEFGEGDFHPQTLLEGLQQNQTLDFQEQVRKAVVAAEDSGKADEFKIAFNDIEFLPPVTPPNNVIAFGRNYQDHASELNHEVQRLYVFTKAASSLTGDESTIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYIYGYTIINDITDRKAQNEQDQAFLSKSLTGGCPMGPYIVTKDELPTPENVNIVTKVNNDIRQDGNTSQMINKIDDLIEEISKYVALHPGDIIATGTPAGVGAGLQPPQFLQPGDEVKVTIDNIGTLTTYIAKD
>NZ_CP013911.1|WP_053022716.1|640633_644311_+|helicase-exonuclease-AddAB-subunit-AddA
MNNIPIKPKDAQWTDAQWKSIYANGQDILVAAAAGSGKTAVLVERIIQKIIRDEIDVDKLLVVTFTNLSAREMKHRVDQRIQQAAIENPNNEHLKNQRIKIHQAQISTLHSFCLKIIQQHYDVIDLDPNFRTISDVENVLLLEQSIDEVLEKHYDTPDIEFLTLVEQLSSDRNDDNFRDLLKRFYNFSIANPSPFEWLDSLVEIYTDDNKHKLYLDELERLSKIYIKAAYHTLLEAENNFLNCIEAEKHLDVIKLEKFKCEKMIEGNVINFEEIINYTSEKLPTITKKLKDTNEDEGISSQFLTNAKDFYDDYKKLLSEVKNKYLMRSYEDLKVDMKRLAPRIQYLVQIVKDIINGFAEKKRSRNVLDFSDYEHFALQILTDQEGNASPIAKEYRSQFEEILVDEYQDTNQVQEAIISKIKRGDESNGNLFMVGDVKQSIYKFRQADPTLFMDKYHRFTKDGDQSGLRIDLSKNFRSRKEVLATTNYLFDHMMDEEVGEIEYDADARLYFGATKYSDKSMPLELHALIQDKSSDNDLEKSEQEARYIAEQVKYIIEHKQVYDMKSETYRQATFKDIVILERGLKNARNLQQVFKDYNIPFHVNSKEGYFEQTEVRLVLSFLRTVDNPLQDIYLVGLMRSVIYQFTEDELANIRVQSMNDDYFYQSILHYMKDQEANPLLVEKLEHFMDDINMYQEYSQSHPVYQLIDKFYNDHYVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLYQFIRFIDELIERNKDFGEENVIGPNDNVVRMMTVHSSKGLEFPYVIYSELSKNFNKGDLRKPLILNQKYGLGIDYFDLEQNVTYPSLSSVVIKSITEKELISEEMRLMYVALTRAKEQLILIGTIDKEETLEKLERLPISGNQIALHKRLSADRPFDLIYSILAKYQSTSLLPEYQFEKSIDNLDESLRPTVDIKIAQFEELSIEDSESEQESRDVSDLEVEGSHDKTLKQQINDQLSFKYPYLKDTEKPSKQSVSELKRQLETEESGTSYERVRQYRIGVSTYERPKFLRENKKRKANEIGTLMHTVMQHLPFKETRMTETELNDYINELIEKHIIEEDAKKDIQFEAVMNFIRSDLYMTITQADKVYRELPFVVNQARVDEMPESDEDVSIIQGMIDLIFLKDDQYYFVDYKTDAFNKRRGMTDEEVGIQLRDKYKIQMKYYKNTLETILNSKVYGYLYFFQFGQMSIEEDV
>NZ_CP013911.1|WP_062931946.1|637152_640641_+|helicase-exonuclease-AddAB-subunit-AddB
MELNAYIGRAGTGKSHHMIDNIKQQMKEDPLGDPIVLIAPTQSTFQLEQAFVNDKELNGSLRTEVLHFERLSYRVFQEVGGLTEERLTQAATEMMIYDLVQQHKSELKLYQSQVNYYGFSEKLSEQIQDFKKYSVTPEHLHTFLQDNDLKTRTRHKLEDISLIYQYFEERINGEFITSEDSLNHFIDILSQSEWIKRAEVYIDGFHNFSTLEYQIIKALVQSAKKVTVLLTTDGNEDPFSLFRKPSEVLTHLKEIAKDLNIELQQQFFKQQYRFNNKDLIQLEQQFDALQINPIAYDGSINILESSSIREEVNEVARQIIKDTRDKQYRYQDIAILYRDEAYAYLFDSVLPQYDIPFNIDTKRSMTHHPIMEMVRSLLEVIQTNWNISPMMRLIKTNILTNHFKDSAYLIDLLENFVVERGVYGKRWLDEKLFSIDNFTKMGRKEHKLTTEEREDFEQVVHLKNDIIDKILTFEKAMNEAENVRGFATAFYETMEAFDLPKYLMTHRDQLDVDGRHEEAEEIDQIWNGLIQILDDLVTVFDNEEMTLKRFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGAMPQPVSSSSLITDEEKKVFEQQAQVELSPTSDILQMDEAFVCYIAMTRGSEQVTFSYSLMGAQGEDKEKSPFIDQIQELFNGLEVMNIHYQHNAQPLSLMEHPHQTKVVLFESLKAWLEAEMVADVWVDAYQVMRDNDKLNNGLEYLLTALTYDNETVKLDEPLAASLYGSTINASVSRFEGYNDCPFKHYANHGLRLNERTKYKLENFDLGNIFHTALKYISDKVDGDFKNLDNKKIHALTVEALENVLPQVQFNLMDSNAYYRYVSKRIGVIVESTLKALRYQNKNTKFKPQRFEAGFRKTPNNSEELIAQPLITKQGIPVNIRGQIDRIDAYTKDDKSYINIIDYKSSNPSAKLDLKKVYYGKQMQMMTYMDIALQNAQRLGLSNEIKPGGLLYFHVHDERLSFKDWGELEDDALTQDKLEQAFLKEYKLRGLVNSDMDVVDALDIRLEEIGKSDIVPVSLKKDGSIGSRGSSVADETTIHKFIKHNKDNFIKTATNIMEGHTEVAPLKFDDQLPCQFCNFQSVCHVDTIIDSKHYRHVDETIDPIKAIQDVELESGDHNE
>NZ_CP013911.1|WP_011276252.1|636417_636990_+|signal-peptidase-I
MKKEIVEWIVAIAVGLLLVWVMVNFVAKSYTIKGDSMDPTLKDGEHVMVNILGYKVGDIKKGNVIVFHANQQDDYVKRVIGVPGDNVIYKNDKLYVNGKKINEPYLDYNEKRKQGEYITGSFETKDLLNANPKSNIIPKGKYLVLGDNREVSKDSRAFGLIDRDQIVGKVSFRFWPFSEFKFNFNPDNEK
>NZ_CP013911.1|WP_011276253.1|635878_636403_+|signal-peptidase-I
MRRVTSWIVAFLFACLFVMFIQMFLVKSAVVQTDDMSPTLNKGDRVIINKIKVTFNMLKDGDIIMYRHNNQLHFGRLVGKPGESIEVRNGKLYRDDRQVNKFYAKNRDINNFAIRDLHDSDGDIILPNSYFILNDNGDKQSDSRTYGLIDKDDIVGDVSLKYYPFKEFTYQFNK
>NZ_CP013911.1|WP_016931167.1|635301_635874_+|TVP38/TMEM64-family-protein
MFHQIEQWFDLLQGFGYLAGFIILFFRAIVPVLPLTLYVILCVHAYGFIAGTIISWLGVVAGTYTVFFFCRKFVNANFMKRIKSRRSIERLIHFIDRQGLVPIFILMCFPFTPNTLVNFVASFSHIRGKYYFIILLISKLISITFLAIMGKSVTSFFTHPVRAIMVLIVTIALWFVGKKVEGYFMGSDKE
>NZ_CP013911.1|WP_011276255.1|633740_635072_+|glucose-6-phosphate-isomerase
MTHIQLDYGKALEFFGQHEIDQQQDIVKTIHKTIHEGTGAGSDFLGWVNLPEDYDKKEFSRIVEASKRIKSNSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLSDKDFSVNVISKSGTTTEPAVAFRLFKQLVEDKYGKAEAKKRIFATTDKAKGALKQLADNEGYETFVVPDDVGGRYSVLTAVGLLPIATAGINIESIMIGANKARKELSSDKLDENIAYQYATIRNILYSKGYTTEMLINYEPSMQYFNEWWKQLYGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNNPKHDITIEEDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNVVVNIPRLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDKKKELEERL
>NZ_CP013911.1|WP_016931166.1|632204_633407_-|argininosuccinate-synthase
MKEKIVLAYSGGLDTSVAVKWLIDKGYDVVAVCLDVGEGKDLDVVYSKALDMGAVECHIIDATKEFSDDFVSYAIKGNLMYENSYPLVSALSRPLIAKKLVEIAEQTNSVGIAHGCTGKGNDQVRFEVAIKALNPNLKAFAPVREWGWSREEEIDYAIKHNIPVGINHDSPYSIDQNLWGRANECGILEDPYAAPPKDAYDLTAELEDTPDTPDEIILSFKNGVPVQLNHQDYDLDQLILTLNELAGKHGIGRIDHVENRLVGIKSREIYETPGAEVILKAHKALETLTLTKDVAHFKPVIEKQLAEQTYNGLWFSPLTDSLKLFIDSTQQYVEGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQSAAVGFIDIYGLPTQVNAYLHGGYSNE
>NZ_CP013911.1|WP_011276257.1|630829_632212_-|argininosuccinate-lyase
MSSKAWGGRFQQQPEDWVDEFNASIDFDQTLLDEDVQGSIAHATMLANQNIISQDDKDAIINGLKEIQQDFHNGKLAFKKSLEDIHLNIEHELIQRVGDAGGKLHTGRSRNDQVATDLHLYVKKEVLEIQDLIRSFQTSILKLAQSHVDTIMPGYTHLQRAQPISFAHHVMTYFWMLERDYSRFVDSMKRIDISPLGAAALSGTTHPIDRHETQQLLEFSSVYENSLDAVSDRDYIIETLHNISLTMIHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRATGHLMSMLVTLKGLPLAYNKDLQEDKEGLFDSVRTIKGSLRIFEGMLDTMTVNTDRLNETVHQDFSNATELADYLVAKDVPFRKAHEIVGKIVFECIQQGIYLLDVPLERYKELNSNIDQDVYDYLKPENCLSRRKSYGSTGQDAVRHQLKVAEKLLNND
>NZ_CP013911.1|WP_016931165.1|629679_630642_-|glycerophosphodiester-phosphodiesterase
MKASNKGIISCLTVASLSLAIIHTPVEASGGESSNTTTTNLTNASKTQNNHTNWSRNLTGERHTTIAHRGASGYAPEHTFAAYDKSHNELGASYIEIDLQRTKDGHLVAMHDETVDRTTNGSGRVEDYTLAELKKLDAGSSFNEQNPQLAKDSYKGATVPTLDEILTRYGTDANYYIETKQPDVYPGMEQQLLDTLNRHNMLTSNSLENGHVLVQSFSEASLLKMHQLNSNVPLIRLLDKGELAQQSEADLQRIRSYAIGVGPEYSDLNAQNTAHLKDLGFLVHPFTVNETADMQRLNQYGVDGVFTNYADQFKAISAQK
>NZ_CP013911.1|WP_011276247.1|645764_646166_+|YisL-family-protein
MLHMHIASWALTIILYVIAFLHISKSQGPTPMFKPLQMALRVFMLLTLFSGFWLLIQEFMAASHGGGGNHMLLTLKMLCGIAVVALMEVSIAKRKKHEASHGLFWATIILIIITMSLGIILPWGPISSLFGIS
>NZ_CP013911.1|WP_053027542.1|646239_647562_-|CoA-disulfide-reductase
MRKIIVVGAVAGGATCASQIRRLDKDSEITIFEKDRDMSFANCGLPYFIGNIVNERKDVLPITPDVFKEKKDITVKTYHEVIAINDKDQTVTVVNRQTNEKFEASYDKLILSPGAGANSLGFDSDYIFTLRNMEDTDAIDQFIDQHQAKKALVVGAGYISLEVLENLYARGLDVTLIHRSEKVNKLMDQDMNQVIFDELDSRHIPYRLNEEIVSVKDHLVTFKSGIQEDFDIIIEGVGTHPNSKFIESSNVALDDKGFVKVNYKFETNIPNIYALGDVITSTYRHVNLPAQVPLAWGAHRGASVIAEQLAGNKNIIFKGFLGTNIVKFFDYTLASVGIKVEELTHFDYQMVELNSGTHAGYYPGNTNVHLRVYFDTNNRHLLRAAAVGKTGVDKRIDVLSMAMMSELTIDELTEFEVAYAPPYSHPKDLVNMIGYKARDL
>NZ_CP013911.1|WP_053022719.1|647643_648468_-|Cof-type-HAD-IIB-family-hydrolase
MKPYLICLDLDGTLLNDNKEISDYTKQVLTTLKKQGHRIMIATGRPYRASQIYYHELNMDTPIVNFNGAYVHHPKSDDFKTTHEVLDVDLARNMIETLQKAKVTNIIAEVRDHVFINNHDPRLFEGFSMGNPKIETGNLLEELDEAPTSLLVEAEEIYIPRIKQMLTRFYAENIEHRRWGAPFPVIEIVKRGISKARGIDQVKDYLGIEPSHIIAFGDEDNDIEMIKYAKYGIAMENGLDELKHIANHITYSNNDDGIGRYLNNFFKLNIPYKG
>NZ_CP013911.1|WP_033079770.1|648668_648977_+|metal-sulfur-cluster-assembly-factor
MEEALKDSILGALEMVIDPELGIDIVNLGLVYKVNVDDDGLCTVEMTLTSMGCPLGPQIIEQIKTVLAEIPEIQDTEVNIVWNPPWNKDMMSRYAKIALGVS
>NZ_CP013911.1|WP_011276243.1|649423_651250_+|acetyltransferase
MKQDFEKGKQRKTKMRYMPGLDGLRAIAVLGIIIYHLNRKWLTGGFIGVDTFFVISGYLITSLLLKEYEERGIISLKQFWIRRVKRLLPAVVALLIVVGIATLIFEPQQIVRVKHDIIAALFYVSNWWYIAKDVNYFEQFSFMPLKHLWSLAIEEQFYLFFPFVLVILLLTIKKYRNVTLILWIISLVSLLAMVIISQPNVGYSRVYFGTDTRLQTLLLGVILAFVWPPFKLKANPPKVLQRSIDGIGILGLIILIYLFFTVKDTSAWIYNGGFYLISGMTLFIIASVVHPSSILAKVLGHRIFVYIGKRSYSLYLWHFPVISFIHIHFVDGQLPIYVYFVDIILTVLFAELSYRYIETPFRREGLKAFSFNYLKRPKFIRTIVSIIAVIPIVLLFLGVFDRFGKDEIDNKANSFNTNDQDKYLVRMMPGENIKIDGSSSNSKSKKQVYTNISPLLIGDSVMVDIGEEFKSQVPKATIDGKVGRHLQEALSIAGNYSNYNKPSDKVVLELGTNGDFTEEELNQLINKFGKAQIYLVNTRVPRDWQDNVNKQLANAAKKHKNVTLVDWYQRSAGHSEYFAPDGVHLENSGVKALSDEIIKTIKKNSKNK
>NZ_CP013911.1|WP_053015824.1|651543_654153_+|ATP-dependent-chaperone-ClpB
MDINQMTYAIQGALQKAVELSKENELQNIEIEAILKGTLEETDSLFKSILERANIDTDELNQAYTNKLKNYPSVQGDNIQYGQYIGAKANELLNKAESYMKEYEDEYISMEHVLRAAMDIDDTTKQFVGNKEEVVKEIITKVRGGNHVTSQNPEVNYEALEKYGRDLVEEVRQGKMDPVIGRDEEIRNTIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPESLLDKTIFELDLSALVAGAKFRGEFEERLKAVLKEVKESDGRIILFIDEIHMLVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLNEYREYIEKDSALERRFQKVGVSEPDVEDTISILRGLKERYEVYHGVRIQDRALVAAAELSDRYITDRFLPDKAIDLVDQACATIRTEMGSNPTELDQVNRRVMQLEIEESALKNESDNASKHRLEELQEELSNEKEKQASLQSRVEQEKEKIANVQEKRAELDRSRQALEDAQTEGNLEKAAELQYGTIPQLEKELKEFEEAYQDEQGDSERMIREVVSDEEIGDIVSQWTGIPVSKLVETEREKLLNLSDILHERVVGQDKAVDLVSDAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAASLFDSEKHMIRIDMSEYMEKHSVSRLIGAPPGYVGHDEGGQLTEAVRRNPYSVILLDEVEKAHSDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQVLLENVKDTGDITEETEKAVMDSLHAFFKPEILNRMDDIVLFKPLSINDMSMIVDKILTQLNIRLMDQRISIEVSDDAKKWLGEEAYEPQFGARPLKRFVQRQIETPLARMMIKEGMPEGTVVNVDLDDNHELTFDVQKPENE
>NZ_CP013911.1|WP_011276241.1|654451_654646_-|YjzD-family-protein
MKYLVTFIWAVILLQMVNFVLNSLNGGGTLNFITPIVLAVIFTIVIAILAAMIKPDDFTRSGNR
>NZ_CP013911.1|WP_011276240.1|654851_655793_+|ketoacyl-ACP-synthase-III
MNVGIKGFGAYAPEKVVDNAYFESFLETSDEWISKMTGIKERRWASENQDTSDLAFEASKKAIKDAGITPADIDMIIVATATGDMPFPSVANILQEKLDTRKVPTMDQLAACSGFMYSMITAKQYVQSGDYKNILVVGADKLSKITDLTDRSTAVLFGDGAGAVVIGEVSEGRGIISYEMGSDGNGGKYLYLNKDTGKLVMNGREVFKFAVRIMGEASTRVVDKAGLQSDDIDMFIPHQANIRIMESARERLGIEREKMSVSVNRFGNTSAASIPLSISQELENGRIKDDDTLVLVGFGGGLTWGAMVIKWGK
>NZ_CP013911.1|WP_011276239.1|655806_657051_+|beta-ketoacyl-ACP-synthase-II
MTENKRVVITGMGALSPIGNDAQTSWENALKGVNGIDTITRIDTEDYNVHLAGELKDFNIEDHIEKKEARRMDRFTQYAVVAARQAVEDAKLEINDETANRIGVWIGSGIGGMETFETAHTTLQNKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGSTVTACATGTNSIGEAFKIIQRGDADAMITGGTEAPITHMALAGFSASRALSTNDDKETACRPFQEGRDGFVMGEGAGILVIESLESAQARGAQIYAEIVGYGSTGDAYHITAPAPEGEGGSRAMQAALDDAGIEAKDVQYLNAHGTSTPVGDMYEIRAIKNTFGDAANQLKVSSTKSMTGHLLGATGGLEAIFSALSIRDSKVAPTIHANTPDPECDLDIVPNEAQDLEITYAMSNSLGFGGHNAVLVFKKFED
>NZ_CP013911.1|WP_033079768.1|657123_657501_-|DUF3899-domain-containing-protein
MKNLKNWMIWLIITPILSMILWIIFTNHTFVSYINTLFYLSLIIFISIFFILLVQEGIFDATSYGFRRIRYQLSSRSKKRTMADDEFLNPQQVKKEHYFISTWIAPALICNIAYFVMTIIISFLL

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Crispr_ID: NZ_CP013911_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013911_2

1216573-1216679

Unclear

Consensus_repeat	Method
ATAACGGTATTTATAGGTGTGCACGAAATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013911_2

>merge|NZ_CP013911|2|1216573-1216679|CRISPRCasFinder
ATAACGGTATTTATAGGTGTGCACGAAATATTTCACTTCGTGCACAGTTAGTTTTTAAAATACGCACAAATGGCTTAATAACGGTATTTATAGGTGTGCACGAAATA

>NZ_CP013911|2|2|1216573-1216679|CRISPRCasFinder
ATAACGGTATTTATAGGTGTGCACGAAATA	TTTCACTTCGTGCACAGTTAGTTTTTAAAATACGCACAAATGGCTTA
ATAACGGTATTTATAGGTGTGCACGAAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013911.1\|WP_062931971.1\|1220661_1221285_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NZ_CP013911.1\|WP_062931965.1\|1216047_1216317_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013911.1\|WP_062931970.1\|1220277_1220490_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NZ_CP013911.1\|WP_062931967.1\|1219143_1219398_-\|DUF1474-family-protein	unknown	unknown	unknown
NZ_CP013911.1\|WP_037558410.1\|1212545_1212827_-\|phage-gp6-like-head-tail-connector-protein	unknown	unknown	gnl\|CDD\|153446
NZ_CP013911.1\|WP_062931966.1\|1216712_1219046_-\|DNA-primase	unknown	unknown	gnl\|CDD\|273716
NZ_CP013911.1\|WP_062931972.1\|1221295_1222471_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP013911.1\|WP_053038709.1\|1223862_1224849_-\|ROK-family-glucokinase	unknown	unknown	gnl\|CDD\|273246
NZ_CP013911.1\|WP_011275667.1\|1222911_1223538_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293792
NZ_CP013911.1\|WP_062931963.1\|1212894_1214133_-\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690
NZ_CP013911.1\|WP_053017517.1\|1214134_1214701_-\|HK97-family-phage-prohead-protease	unknown	unknown	gnl\|CDD\|226263
NZ_CP013911.1\|WP_011275666.1\|1223539_1223863_-\|MTH1187-family-thiamine-binding-protein	unknown	unknown	gnl\|CDD\|223090
NZ_CP013911.1\|WP_053017508.1\|1209833_1210145_-\|phage-head-closure-protein	unknown	unknown	gnl\|CDD\|377521
NZ_CP013911.1\|WP_053017510.1\|1210156_1211800_-\|terminase-large-subunit	unknown	unknown	gnl\|CDD\|226974
NZ_CP013911.1\|WP_062931968.1\|1219397_1219814_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013911.1\|WP_062931964.1\|1214687_1215866_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|377413
NZ_CP013911.1\|WP_053017512.1\|1211792_1212125_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013911.1\|WP_053017514.1\|1212262_1212553_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013911.1\|WP_062931969.1\|1219953_1220274_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|200128
NZ_CP013911.1\|WP_062931962.1\|1209002_1209500_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013911.1\|WP_062931972.1\|1221295_1222471_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.86145e-44
NZ_CP013911.1\|WP_062931971.1\|1220661_1221285_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	8.50641e-14
NZ_CP013911.1\|WP_011275667.1\|1222911_1223538_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	5.32749e-60
NZ_CP013911.1\|WP_037558410.1\|1212545_1212827_-\|phage-gp6-like-head-tail-connector-protein	gnl\|CDD\|153446	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins. The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.	0.00027937
NZ_CP013911.1\|WP_062931966.1\|1216712_1219046_-\|DNA-primase	gnl\|CDD\|273716	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions].	7.10645e-101
NZ_CP013911.1\|WP_053038709.1\|1223862_1224849_-\|ROK-family-glucokinase	gnl\|CDD\|273246	TIGR00744, Glucokinase_Glucose_kinase., ROK family protein (putative glucokinase). This model models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. [Unknown function, General].	1.72596e-157
NZ_CP013911.1\|WP_062931963.1\|1212894_1214133_-\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	7.2085e-41
NZ_CP013911.1\|WP_053017517.1\|1214134_1214701_-\|HK97-family-phage-prohead-protease	gnl\|CDD\|226263	COG3740, COG3740, Phage head maturation protease [General function prediction only].	4.86917e-31
NZ_CP013911.1\|WP_011275666.1\|1223539_1223863_-\|MTH1187-family-thiamine-binding-protein	gnl\|CDD\|223090	COG0011, COG0011, Uncharacterized conserved protein [Function unknown].	1.49771e-38
NZ_CP013911.1\|WP_053017508.1\|1209833_1210145_-\|phage-head-closure-protein	gnl\|CDD\|377521	pfam05521, Phage_H_T_join, Phage head-tail joining protein.	1.07941e-17
NZ_CP013911.1\|WP_053017510.1\|1210156_1211800_-\|terminase-large-subunit	gnl\|CDD\|226974	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only].	7.73662e-115
NZ_CP013911.1\|WP_062931964.1\|1214687_1215866_-\|phage-portal-protein	gnl\|CDD\|377413	pfam04860, Phage_portal, Phage portal protein. Bacteriophage portal proteins form a dodecamer and is located at a five-fold vertex of the viral capsid. The portal complex forms a channel through which the viral DNA is packaged into the capsid, and exits during infection. The portal protein is though to rotate during DNA packaging. Portal proteins from different phage show little sequence homology, so this family does not represent all portal proteins.	5.27927e-52
NZ_CP013911.1\|WP_062931970.1\|1220277_1220490_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.89959e-09
NZ_CP013911.1\|WP_062931969.1\|1219953_1220274_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	3.31063e-15

>NZ_CP013911.1|WP_062931965.1|1216047_1216317_-|hypothetical-protein
MNEKDKIFNELVYDAPTQIIPAPPNLYFEIEDAGDKWYSPIVCIALTKGHEVFFMDTDDYGNTDIGYNKRVKKYNEKTGEFEQLSKMFD
>NZ_CP013911.1|WP_062931964.1|1214687_1215866_-|phage-portal-protein
MLGLDKIEQTTSRQFEMLSGSFQSFSQFNGDAYSNDIFRSAVDAIARHIAKLSGKHVNDTKDFNNYKINRLLQNRPNPYMSGYDFLYKIATQYYLFNNAFILIQKDNNGNLSGLYPLTPTSVEYVVDGAGEMFLKCLFKDGEIVHFRLSEVAILRRHFNSNELLGDDNSAIMNTLELAHTQNSGMESAIKNSAQIRGILKYNQKLADSKLKEKKDAFMNDYLSMSNNGGVIPLDAMLEYIPLKTSDIQIDTSQMEVVKKKIYDYLGINEDIVTGKYDENLWQAFYESTIEPFAIQLSSELTDKIFTEREQAFSNRIIFESSKLQYASNQSKSNMIKELLPLGLLTINEARDLMNLSAVEDGDERIQSLNYIEKTLAKNYQMGDKEVGQDEGN
>NZ_CP013911.1|WP_053017517.1|1214134_1214701_-|HK97-family-phage-prohead-protease
MKEIRSADIQAETRDDEMVLEGTAIVFDKPALINTPTGSYTEIIKRNALDGVKFNDTRLLVSHDQNRLPLAKSPKTMDVWQDDAGMHFRARLANTSESRSVYESVKRGDMSGVSFGFTVSDGSRYDVETRTRTITKIDKVLEFSVVNFPAYSETSVEARSQMQEAEKRQYEINKAKINLNKLFIKEIN
>NZ_CP013911.1|WP_062931963.1|1212894_1214133_-|phage-major-capsid-protein
MFNTVSEAFNYYRNSSLEEIETRAREIKGQIDTDPETNVTKLNIEIEGLNQAKANIKDKENQQVEQNNTEQRSYNPITGTQLRGQNEVPTNNIFGSEEYRSAFFKTMLGKNLTDIEQRTFNRAMEQQDIEHRADEFASSSNSSAVIPEQTLNEVIKKARTQGGLLANVRTFNMPTKIRIPIGTPQDRAEWHTEGAYVEADKPITASVQFEANEILKVFSISVKAKTMSIQAFESYLVEELTNCVVEAIEYALINGTGKGQGEGILTGIKWDATNSVDVTGKYTDFTKALGMLSRGYAQNAKFAMSNATLYNQVYGVMDNNQRPIFIQDAQRENVGYIFGKQVIIDDNIEDGTIILGDFNYVGYNLPQGIMLESSRESSFRSGLIDYRAMAVADTRVLMSEAFVKLTTTTAEA
>NZ_CP013911.1|WP_037558410.1|1212545_1212827_-|phage-gp6-like-head-tail-connector-protein
MILSIEDARNALRVDGDFNDDIIIPLVEAIPNYLYITTGRDWLDEPVQPLAQTTAKFILQLWFDPQTQDSERLKRTIDSLLGALHALGSEYDG
>NZ_CP013911.1|WP_053017514.1|1212262_1212553_-|hypothetical-protein
MAKSIPRAFYKSAKWQKCKNSYMASQNYICERCGDVASICHHKVYLNAENYTNPYVSLNHDLLESLCQTCHNQEHFGSPSTGEGLRFDEKGNLIKI
>NZ_CP013911.1|WP_053017512.1|1211792_1212125_-|hypothetical-protein
MNKIYKSINLEQLKIQIDKDNNINKPVAYDLIEELNFMKETMNELKNTVRTHGATYIFKQGEQEYLKESPAMKSYNTTVSKYNATLKQLLSLLPQEVEESDAFMDFVTNG
>NZ_CP013911.1|WP_053017510.1|1210156_1211800_-|terminase-large-subunit
MANYIEQYYKAIENGEIVTSKRVKKQYQKLIQDMEHHDKYIFDEAKAMRPIQFIENFCRHSKGELAGKPLVLDLFQKAYISALFGFVDKETGYRRYTESFFFVGRKNGKTTMLAAIALYMMIADGESGSEVYSVASKRDQANILFDQAHEMIVQSPDLNKNIRKRKSDLYFSHNFSKMQSLGKNSNSLDGLNAHLVVIDELHSIQDRNLYEVMKQSQSARTQPLLIMITTAGTHRGTIFDDLYEYACNVVDGNFTDDNFLPIMYELDHKAEYKLPDCWQKANPALGVSKKVEDIERKVARAQNNMNDLTGILTKDFNIREVTHSAWLTFDAINNEDTFDINDFAGWYAIGGADLSITTDLSCATLLFIDPETEMRFAHQMYWLPEDNLYKRVHEDKIPYDKWHEQGLLRLCSGNTIDYSDITDWFNEMMNDYDITPLWIYYDNYSARYWVDEMEAYGFHMVRTPQGAKTLSLPMQNMGADLEKHKINYNNNPILKWCLTNTGVETDRNGNIVPIKNQSPKRRIDGVASLLDAYVGLFDNYEQFLRAM
>NZ_CP013911.1|WP_053017508.1|1209833_1210145_-|phage-head-closure-protein
MAYHFNNRIEILEEQENEGPEAFGSTKVVIATPWADVKTMKGNEFQQWRLTANKENVRFIIRYRKGINPRQYVRYNGKDYNIVSVTNDNGMNQTLTIFAEVSD
>NZ_CP013911.1|WP_062931962.1|1209002_1209500_+|hypothetical-protein
MKLVELQKLDFLLKKVNKRRESKSFKIIFSLNNDFFVGDFIPDIQQTSVKLRDVTSTDIEDHTLFDLDDEKEWKKMFESSHGAYGSYFEMLIDRSNFKNFTDYFRLLENTLEEYSFKFAQDLPPIIYNVESVTQNLGLHFFRVDENINFDSISIISEDVLYNDDK
>NZ_CP013911.1|WP_062931966.1|1216712_1219046_-|DNA-primase
MAIKEKDKIIEVNALEIPEELKELPQWVLWRAEWNEKQQQFSKVPYSFSGYRASSTNKDTWTIFDVINRLNEDNENYNGIGFMLSDDDNYIVLDIDNAIDEHGQIISDLALDMTEITYCEKSPSGTGLHCFFKGQLPSERKKKRSDLDIELYDNARFMTVTGESIGKSEICEEQEILNNLVERFFKEEQNFETTLTYAPNHKSELSDDEVIDLMLKSKQKDKISDLLKGNYEPYFDSPSEAVQSLLHYLAFYTGKNKAQMERIFLNYNNLTDKWDSKRSNSTWGELELDRAIANQNEVYKKSTTKNVKELLNELRKEELQHMREVWEKEKEKGEAFGRPPQTIKPIRCAYILNEHLNFILFDMEEDTKLAFYMENEGIYTQNYTYIRRVISWLEPKHNKRKADDVIYHLVHNFAPVTPRTNDPDLIPVNNGVYNRQTKTLEPFTSKYVFTTKISTNYVANASSPVIDGWTFDEWLYEIACADREVYTLLWQVINDSLNGNYTRKKAIFLVGDGNNGKGTFQVMLSNLIGFDNVASLKVNEFDHDFKLGVLEGKTLVIGDDVPVGVNVEDSSNFNSVVTGDSVLVNIKNKQPFRTVYRCTVIQSTNGMPRFKNKTGGTNRRLLIVPFNADFNGNKENTDIKEKYLKDKKVLEYILYKAINMDFKKFIIPQVSAKMLEEYKQDNDPVYDFKVVEFDTWNIDKVAQVVVYYRYKLFCENSGYRPLSERKFYKTFEQHLSKNWKKDRSRYYSVADLKSKVGYFEPTLLPHGEPKQSYIKVV
>NZ_CP013911.1|WP_062931967.1|1219143_1219398_-|DUF1474-family-protein
MKLFKKKYDHKKVNKVKDVVLYTAYSFEAKTYEEAIELLKGNNKQKAIELMYERLIEAQRNEYEMKLQIEKASSAKFGDRTDNA
>NZ_CP013911.1|WP_062931968.1|1219397_1219814_-|hypothetical-protein
MKIKEKYQLSKVVKVLEKVVSEDSQNGELFMPKQMFHSITDYRYNDTDYYEYMLKLIHKELFNILAELDFEDEAFSILDEVTMTLSDVMNEDKEIYYYTVTDSTGEHEHTTDREGHVIGILEWALDYIVGNIEVEEVE
>NZ_CP013911.1|WP_062931969.1|1219953_1220274_-|helix-turn-helix-domain-containing-protein
MFNINIDEDEARELLEQAINARVDELARQKYFLNYKELSEYLNMSKPTIEELLINNGMKYFKLGSTYRFKKSDVDEFMEQLTAHMDIQNNDFKQVNIKKLLEAQNV
>NZ_CP013911.1|WP_062931970.1|1220277_1220490_-|helix-turn-helix-transcriptional-regulator
MKNNFRVLIAIKKLSIAKINEETGIAKATLYGLYYEKTQNPTLPIILKLCNYLKVTPNEFLGIDNEIKEA
>NZ_CP013911.1|WP_062931971.1|1220661_1221285_+|helix-turn-helix-transcriptional-regulator
MIQSRLSVLMAERGLKISDLYEETGISKTTLMAIAENNGKGVQFDTVDKLCNFLGVTPCEFFEYSPYLVSFQMDKIDSDKNLPIDFTITIKNQNYEKLFYFNVFIYLGNSYDIPVRKDEFKAYINVGLESSDHYNDEEFYNFISNLTISFRTDFINKIIGSITSLLLDFKEVKTIDRKSISFKKGDYIALGLFKESEYETLKKITLK
>NZ_CP013911.1|WP_062931972.1|1221295_1222471_+|site-specific-integrase
MASYDQIAKNNWRYRISLGKNAETGKYEYISKTGFKRKSDAKHQAEMIERQLRNGEYIPPSSSTFKQVADEWLSQYAKDVKISSVRTREKAIKHVLEHFGTKPIQSITKRDYQAFIDNISAKYSDSYVTGIMTTTNMIFKYALEMRLIKTLPTENIKRPKKQVTVEELEGNEIKQKFLEKDELLQFLKVAKNHHSPQNSFEVFTTLAYTGLRIGELQALKWSDIDFENNTISITKTYFNPTNHKKKYQLLPPKTESSIGKISVDHNVIEMLKDYKINKQDTWKNELYVDNNFVFTDVNGYPLVLTKLQNWIQAIMQKTDITNKQISTHSFRHTNCALLIEAGVHIKEIQERLRHKDITTTMNIYAKITNSYKKDASEKFSKLMENVSRELF
>NZ_CP013911.1|WP_011275667.1|1222911_1223538_-|MBL-fold-metallo-hydrolase
MKISSLTLGLVDTNAYFIENEESVILIDPAGEPDKIFKKLNQINKPLKAILLTHAHFDHIGALDDVVNKYEVPLYMNKEEFSFLKDPDKNGSAKFKQYGMPLITSDVKPNHLDEGEYNIEGFEFNVLHTPGHSPGSLTYVFEDFAVVGDTLFNNGIGRTDLYRGDYETLVDSIKDKLFELEGDLPLFPGHGPYTTVDDEQLNPFLDGQ
>NZ_CP013911.1|WP_011275666.1|1223539_1223863_-|MTH1187-family-thiamine-binding-protein
MAIVDVVIIPVGTEGPSVSKYIAEIQMKLESFKQEGKIDYQLTPMNTLIEGDLKDLFEVVQAIHELPFNKGIDRVCTNLRIDDRRDKSRKMNDKLKSVQKHIDNQGE
>NZ_CP013911.1|WP_053038709.1|1223862_1224849_-|ROK-family-glucokinase
MKNIILAADIGGTTCKLGIFNGELEQLHKWSIKTDTSDHTGKTLLKNIYDSFNETLSTHQLKIDDVIGVGIGVPGPVDFETGIVNGAVNLHWPGSVNVRQIFSEFINCPVYVDNDANVAALGEKHKGAGQGADDVVAITLGTGLGGGIISNGELVHGHNGSGAEIGHIRTDFDQRFNCNCGKSGCIETVASATGVVNLVNFYYPKLTFKSSILPLIKDNKVTAKAVFDAAKAGDQFCIFITEKVANHIAYLCSIISATSNPKYIVLGGGMSTAGLILIENIKTEYHNLTFTPAQKDTEIVQAQLGNDAGITGAAGLIKTYILEKAGVK

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Crispr_ID: NZ_CP013911_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013911_3

2261641-2265716

Orphan

Consensus_repeat	Method
GTGCTTGCACTTGNTGANTC	CRT

75 spacers

The CRISPR arrays of NZ_CP013911_3

>merge|NZ_CP013911|3|2261641-2265716|CRT
GTGCTTGCGCTTGTTGAACTTGATTCGCTCATTGATATTGATGTACTGATTGATGTCGATACGCTTGCACTTGTTGAATCACTCACACTTGTTGACGTTGATTCACTTGATGATGTGCTTGCACTTGTTGAATCACTCACACTTGTTGACGTTGATCCACTTAATGATGTGCTTGTGCTTGTTGAGTCACTCACACTTGTTGACGTTGACGCACTCAATGATGTGCTTGTACTTGTTGAATCACTCACGCTTGTTGATGTTGATCCACTTAATGATGTGCTTGCACTTGCTGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAATGACGTACTTGTGCTTGTTGAGTCACTCACACTTGTTGACGTTGACTCACTTAATGACGTGCTTGCACTTGTTGAATCACTCACGCTTGTTGACGCTGAATCACTTAATGATGTGCTTGCACTTGCTGAGTCACTCACACTTGTTGACGTTGACTCACTTAATGATGTGCTTGTACTTGTTGAATCACTCACGCTTGTTGATGTTGATCCACTTAATGACGTGCTTGCACTTGTTGAGTCACTCACACTTGTTGATGTTGATGCACTAACTGATGTGCTTGCACTTAATGAGTCTGAAAGACTCGTACTTTCTGATCCACTTAATGATGTGCTCATACTTGTTGAGTCACTCACACTTGTTGATGTTGATGCACTCAATGATGTGCTTGCACTTGTTGAATCACTCACACTTGTTGACGTTGATCCACTTAATGATGTGCTTGCACTTGCTGAGTTTGAAAGACTCGTACTTGTTGATTCACTTAATGACGTACTTGTGCTTGTTGAGTCACTCACACTTGTTGATGTTGATGCACTAACTGATGTGCTTGCACTTGCTGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAATGACGTACTTGTGCTTGTTGAGTCACTCTCACTTGTTGACGTTGATCCACTTAATGACGTGCTTGCACTTGTTGAATCACTCACGCTTGTTGACGCTGAATCACTTAATGATGTGCTTGCACTTGCTGAGTCACTCACACTTGTTGACGTTGACTCACTTAATGATGTGCTTGTACTTGTTGAATCACTCACGCTTGTTGATGTTGATCCACTTAATGACGTGCTTGCACTTGTTGAGTCACTCACACTTGTTGATGTTGATGCACTAACTGATGTGCTTGCACTTAATGAGTCTGAAAGACTCGTACTTTCTGATCCACTTAATGATGTGCTCATACTTGTTGAGTCACTCACACTTGTTGATGTTGATGCACTCAATGATGTGCTTGCACTTGTTGAGTCACTCACACTTGTTGATGTTGACGCACTCAATGATGTGCTTGCACTTGTTGAATCACTCACGCTTGTTGACGTTGATGCACTATCTGATGTACTTGTGCTTGTTGAGTCACTCACACTTATTGATGTTGACTCACTTAATGATGTGCTTGCACTTGCTGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAGTGATGTGCTTGCACTTGTTGAATCGCTCACACTTGTTGATGTTGACTCACTTAATGATGTGCTTGCACTTGCTGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAATGACGTACTTGTGCTTGTTGAGTCACTCTCACTTGTTGATGTTGACGCACTCAATGATGTGCTTGCACTTAATGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAATGACGTGCTTGCGCTTGTTGAGTCACTCTCACTTGTTGATGTTGACTCACTTAATGATGTGCTTGCACTTGCTGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAGTGATGTGCTTGCACTTGTTGAATCACTCACGCTTGTTGATGTAGATGCACTAACTGATGTGCTTGCACTTGCTGAGTCTGAAAGACTCGCACTTTCTGATCCACTTAATGACGTGCTTGCACTTGCTGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAATGACGTGCTTGCACTTGTTGAGTCACTCACGCTTGTTGACGTTGATGCACTATCTGATGTGCTTGCACTTAATGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAATGACGTGCTTGCGCTTGTTGAGTCACTCTCACTTGTTGATGTTGACTCACTCAATGATGTGCTTGCACTTGTTGAATCGCTCACACTTGTTGATGTTGATCCACTTAATGACGTACTTGTACTTGTTGAATCACTCACGCTTGTTGACGTTGATGCACTATCTGATGTACTTGTGCTTGTTGAATCGCTCACACTTGTTGATGTTGACGCACTCAATGATGTGCTTGCACTTGTTGAATCGCTCACACTTGTTGATGTTGATCCACTTAATGACGTACTTGTACTTGTTGAATCACTCACGCTTGTTGACGTTGATGCACTATCTGATGTACTTGTGCTTGTTGAATCGCTCACACTTGTTGATGTTGACTCACTTAATGATGTGCTTGCACTTGCTGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAGTGATGTGCTTGCACTTGTTGAATCGCTCACACTTGTTGATGTTGACTCACTTAATGATGTGCTTGCACTTGCTGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAATGACGTACTTGTGCTTGTTGAGTCACTCTCACTTGTTGATGTTGACGCACTCAATGATGTGCTTGCACTTAATGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAATGACGTGCTTGCGCTTGTTGAGTCACTCTCACTTGTTGATGTTGACTCACTTAATGATGTGCTTGCACTTGCTGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAGTGATGTGCTTGCACTTGTTGAATCACTCACGCTTGTTGATGTAGATGCACTAACTGATGTGCTTGCACTTGCTGAGTCTGAAAGACTCGCACTTTCTGATCCACTTAATGACGTGCTTGCACTTGCTGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAATGACGTGCTTGCACTTGTTGAGTCACTCACGCTTGTTGACGTTGATGCACTATCTGATGTGCTTGCACTTGTTGAATCGCTCACACTTGTTGATGTTGACTCACTTAATGATGTGCTTGCACTTGCTGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAATGACGTGCTTGCACTTGTTGAGTCACTCACGCTTGTTGACGTTGATGCACTATCTGATGTGCTTGCACTTAATGAGTCTGAAAGACTCGTACTTGTTGATTCACTTAATGACGTGCTTGCACTTGCTGAGTCTGAAAGACTCGCACTTTCTGATCCACTTAATGACGTGCTTGCACTTGCTGAGTCTGAAAGACTCGCACTTTCTGATCCACTTAATGACGTGCTTGCACTTGCCGAGTCTGAAAGACTCGCACTTTCTGATCCACTTAATGACGTGCTTGCACTTGCTGAGTCTGAAAGACTCGCACTTTCTGATCCACTTAATGACGTGCTTGCACTTGCTGAGTCTGAAAGACTCGCACTTTCTGATCCACTTAATGACGTGCTTGCACTTGCTGAGTCTGAAAGACTCGCACTTTCTGATCCACTTAATGACGTGCTTGCACTTGCTGAGTCTGAAAGACTCGCACTTTCTGATCCACTTAATGACGTGCTTGCACTTGCTGAGTCTGAAAGACTCGCACTTTCTGATCCACTTAATGACGTGCTTGCACTTGTTGAATCACTCACGCTTGTTGACGCTGAATCACTTAATGATGTGCTTGCACTTAATGAGTCTGAGAGACTCGTACTTGTTGATTCACTTAATGACGTGCTTGCACTTAATGAGTCTGAGAGACTCGTACTTGTTGATTCACTTAATGACGTGCTTGCGCTTGTTGAGTCACTCACACTTGTTGATGTTGACGCACTCAATGATGTGCTTGCACTTGTTGAATCACTCACACTTGTTGACGCTGAATCACTTAATGATGTGCTTGCACTTGTTGAGTCACTCACGCTTGTTGACGTTGATCCACTTAATGATGTGCTTGCACTTGTTGAATC

>NZ_CP013911|3|1|2261641-2265716|CRT
GTGCTTGCGCTTGTTGAACT	TGATTCGCTCATTGATATTGATGTACTGATTGATGTCGAT
ACGCTTGCACTTGTTGAATC	ACTCACACTTGTTGACGTTGATTCACTTGATGAT
GTGCTTGCACTTGTTGAATC	ACTCACACTTGTTGACGTTGATCCACTTAATGAT
GTGCTTGTGCTTGTTGAGTC	ACTCACACTTGTTGACGTTGACGCACTCAATGAT
GTGCTTGTACTTGTTGAATC	ACTCACGCTTGTTGATGTTGATCCACTTAATGAT
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAATGAC
GTACTTGTGCTTGTTGAGTC	ACTCACACTTGTTGACGTTGACTCACTTAATGAC
GTGCTTGCACTTGTTGAATC	ACTCACGCTTGTTGACGCTGAATCACTTAATGAT
GTGCTTGCACTTGCTGAGTC	ACTCACACTTGTTGACGTTGACTCACTTAATGAT
GTGCTTGTACTTGTTGAATC	ACTCACGCTTGTTGATGTTGATCCACTTAATGAC
GTGCTTGCACTTGTTGAGTC	ACTCACACTTGTTGATGTTGATGCACTAACTGAT
GTGCTTGCACTTAATGAGTC	TGAAAGACTCGTACTTTCTGATCCACTTAATGAT
GTGCTCATACTTGTTGAGTC	ACTCACACTTGTTGATGTTGATGCACTCAATGAT
GTGCTTGCACTTGTTGAATC	ACTCACACTTGTTGACGTTGATCCACTTAATGAT
GTGCTTGCACTTGCTGAGTT	TGAAAGACTCGTACTTGTTGATTCACTTAATGAC
GTACTTGTGCTTGTTGAGTC	ACTCACACTTGTTGATGTTGATGCACTAACTGAT
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAATGAC
GTACTTGTGCTTGTTGAGTC	ACTCTCACTTGTTGACGTTGATCCACTTAATGAC
GTGCTTGCACTTGTTGAATC	ACTCACGCTTGTTGACGCTGAATCACTTAATGAT
GTGCTTGCACTTGCTGAGTC	ACTCACACTTGTTGACGTTGACTCACTTAATGAT
GTGCTTGTACTTGTTGAATC	ACTCACGCTTGTTGATGTTGATCCACTTAATGAC
GTGCTTGCACTTGTTGAGTC	ACTCACACTTGTTGATGTTGATGCACTAACTGAT
GTGCTTGCACTTAATGAGTC	TGAAAGACTCGTACTTTCTGATCCACTTAATGAT
GTGCTCATACTTGTTGAGTC	ACTCACACTTGTTGATGTTGATGCACTCAATGAT
GTGCTTGCACTTGTTGAGTC	ACTCACACTTGTTGATGTTGACGCACTCAATGAT
GTGCTTGCACTTGTTGAATC	ACTCACGCTTGTTGACGTTGATGCACTATCTGAT
GTACTTGTGCTTGTTGAGTC	ACTCACACTTATTGATGTTGACTCACTTAATGAT
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAGTGAT
GTGCTTGCACTTGTTGAATC	GCTCACACTTGTTGATGTTGACTCACTTAATGAT
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAATGAC
GTACTTGTGCTTGTTGAGTC	ACTCTCACTTGTTGATGTTGACGCACTCAATGAT
GTGCTTGCACTTAATGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAATGAC
GTGCTTGCGCTTGTTGAGTC	ACTCTCACTTGTTGATGTTGACTCACTTAATGAT
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAGTGAT
GTGCTTGCACTTGTTGAATC	ACTCACGCTTGTTGATGTAGATGCACTAACTGAT
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGCACTTTCTGATCCACTTAATGAC
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAATGAC
GTGCTTGCACTTGTTGAGTC	ACTCACGCTTGTTGACGTTGATGCACTATCTGAT
GTGCTTGCACTTAATGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAATGAC
GTGCTTGCGCTTGTTGAGTC	ACTCTCACTTGTTGATGTTGACTCACTCAATGAT
GTGCTTGCACTTGTTGAATC	GCTCACACTTGTTGATGTTGATCCACTTAATGAC
GTACTTGTACTTGTTGAATC	ACTCACGCTTGTTGACGTTGATGCACTATCTGAT
GTACTTGTGCTTGTTGAATC	GCTCACACTTGTTGATGTTGACGCACTCAATGAT
GTGCTTGCACTTGTTGAATC	GCTCACACTTGTTGATGTTGATCCACTTAATGAC
GTACTTGTACTTGTTGAATC	ACTCACGCTTGTTGACGTTGATGCACTATCTGAT
GTACTTGTGCTTGTTGAATC	GCTCACACTTGTTGATGTTGACTCACTTAATGAT
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAGTGAT
GTGCTTGCACTTGTTGAATC	GCTCACACTTGTTGATGTTGACTCACTTAATGAT
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAATGAC
GTACTTGTGCTTGTTGAGTC	ACTCTCACTTGTTGATGTTGACGCACTCAATGAT
GTGCTTGCACTTAATGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAATGAC
GTGCTTGCGCTTGTTGAGTC	ACTCTCACTTGTTGATGTTGACTCACTTAATGAT
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAGTGAT
GTGCTTGCACTTGTTGAATC	ACTCACGCTTGTTGATGTAGATGCACTAACTGAT
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGCACTTTCTGATCCACTTAATGAC
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAATGAC
GTGCTTGCACTTGTTGAGTC	ACTCACGCTTGTTGACGTTGATGCACTATCTGAT
GTGCTTGCACTTGTTGAATC	GCTCACACTTGTTGATGTTGACTCACTTAATGAT
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAATGAC
GTGCTTGCACTTGTTGAGTC	ACTCACGCTTGTTGACGTTGATGCACTATCTGAT
GTGCTTGCACTTAATGAGTC	TGAAAGACTCGTACTTGTTGATTCACTTAATGAC
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGCACTTTCTGATCCACTTAATGAC
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGCACTTTCTGATCCACTTAATGAC
GTGCTTGCACTTGCCGAGTC	TGAAAGACTCGCACTTTCTGATCCACTTAATGAC
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGCACTTTCTGATCCACTTAATGAC
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGCACTTTCTGATCCACTTAATGAC
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGCACTTTCTGATCCACTTAATGAC
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGCACTTTCTGATCCACTTAATGAC
GTGCTTGCACTTGCTGAGTC	TGAAAGACTCGCACTTTCTGATCCACTTAATGAC
GTGCTTGCACTTGTTGAATC	ACTCACGCTTGTTGACGCTGAATCACTTAATGAT
GTGCTTGCACTTAATGAGTC	TGAGAGACTCGTACTTGTTGATTCACTTAATGAC
GTGCTTGCACTTAATGAGTC	TGAGAGACTCGTACTTGTTGATTCACTTAATGAC
GTGCTTGCGCTTGTTGAGTC	ACTCACACTTGTTGATGTTGACGCACTCAATGAT
GTGCTTGCACTTGTTGAATC	ACTCACACTTGTTGACGCTGAATCACTTAATGAT
GTGCTTGCACTTGTTGAGTC	ACTCACGCTTGTTGACGTTGATCCACTTAATGAT
GTGCTTGCACTTGTTGAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013911.1\|WP_033079657.1\|2248732_2249389_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP013911.1\|WP_049394559.1\|2259663_2260863_-\|accessory-Sec-system-protein-translocase-subunit-SecY2	unknown	unknown	gnl\|CDD\|237095
NZ_CP013911.1\|WP_037558223.1\|2271003_2271831_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP013911.1\|WP_037558373.1\|2253618_2256009_-\|accessory-Sec-system-translocase-SecA2	unknown	unknown	gnl\|CDD\|163426
NZ_CP013911.1\|WP_011274649.1\|2271827_2272628_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP013911.1\|WP_037558371.1\|2250763_2252101_-\|accessory-Sec-system-glycosylation-chaperone-GtfB	unknown	unknown	gnl\|CDD\|274351
NZ_CP013911.1\|WP_011274651.1\|2270170_2270548_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013911.1\|WP_011274648.1\|2272629_2273403_-\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|131368
NZ_CP013911.1\|WP_037558221.1\|2268102_2268585_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP013911.1\|WP_011274647.1\|2273679_2274639_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225762
NZ_CP013911.1\|WP_037558374.1\|2256001_2256544_-\|accessory-Sec-system-protein-Asp3	unknown	unknown	gnl\|CDD\|163423
NZ_CP013911.1\|WP_011274666.1\|2248519_2248711_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013911.1\|WP_037558370.1\|2249392_2250391_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP013911.1\|WP_011274656.1\|2258079_2259654_-\|accessory-Sec-system-protein-Asp1	unknown	unknown	gnl\|CDD\|274740
NZ_CP013911.1\|WP_011274646.1\|2274948_2276490_+\|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|223808
NZ_CP013911.1\|WP_011274644.1\|2277197_2278367_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP013911.1\|WP_049394846.1\|2266980_2267448_-\|KxYKxGKxW-signal-peptide-domain-containing-protein	unknown	unknown	gnl\|CDD\|274741
NZ_CP013911.1\|WP_049394811.1\|2276563_2277127_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013911.1\|WP_049394560.1\|2256527_2258090_-\|accessory-Sec-system-protein-Asp2	unknown	unknown	gnl\|CDD\|274739
NZ_CP013911.1\|WP_037558372.1\|2252093_2253602_-\|accessory-Sec-system-glycosyltransferase-GtfA	unknown	unknown	gnl\|CDD\|131964

Protein	Function_ID	Function_description	E-value
NZ_CP013911.1\|WP_033079657.1\|2248732_2249389_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.71884e-53
NZ_CP013911.1\|WP_049394559.1\|2259663_2260863_-\|accessory-Sec-system-protein-translocase-subunit-SecY2	gnl\|CDD\|237095	PRK12417, secY, preprotein translocase subunit SecY; Reviewed.	1.45249e-171
NZ_CP013911.1\|WP_037558223.1\|2271003_2271831_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	3.02036e-82
NZ_CP013911.1\|WP_037558373.1\|2253618_2256009_-\|accessory-Sec-system-translocase-SecA2	gnl\|CDD\|163426	TIGR03714, Protein_translocase_subunit_SecA_2, accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP013911.1\|WP_011274649.1\|2271827_2272628_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	1.62752e-100
NZ_CP013911.1\|WP_037558371.1\|2250763_2252101_-\|accessory-Sec-system-glycosylation-chaperone-GtfB	gnl\|CDD\|274351	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. [Protein fate, Protein modification and repair].	0
NZ_CP013911.1\|WP_011274648.1\|2272629_2273403_-\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|131368	TIGR02315, Phosphonates_import_ATP-binding_protein_PhnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions].	1.30013e-144
NZ_CP013911.1\|WP_037558221.1\|2268102_2268585_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.91419e-13
NZ_CP013911.1\|WP_011274647.1\|2273679_2274639_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|225762	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism].	3.60042e-92
NZ_CP013911.1\|WP_037558374.1\|2256001_2256544_-\|accessory-Sec-system-protein-Asp3	gnl\|CDD\|163423	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.46832e-64
NZ_CP013911.1\|WP_037558370.1\|2249392_2250391_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.0518e-15
NZ_CP013911.1\|WP_011274656.1\|2258079_2259654_-\|accessory-Sec-system-protein-Asp1	gnl\|CDD\|274740	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP013911.1\|WP_011274646.1\|2274948_2276490_+\|bifunctional-metallophosphatase/5'-nucleotidase	gnl\|CDD\|223808	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism].	1.21963e-88
NZ_CP013911.1\|WP_011274644.1\|2277197_2278367_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	2.51639e-74
NZ_CP013911.1\|WP_049394846.1\|2266980_2267448_-\|KxYKxGKxW-signal-peptide-domain-containing-protein	gnl\|CDD\|274741	TIGR03715, cell_surface_protein_precursor, KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.	5.7759e-05
NZ_CP013911.1\|WP_049394560.1\|2256527_2258090_-\|accessory-Sec-system-protein-Asp2	gnl\|CDD\|274739	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP013911.1\|WP_037558372.1\|2252093_2253602_-\|accessory-Sec-system-glycosyltransferase-GtfA	gnl\|CDD\|131964	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. [Protein fate, Protein modification and repair].	0

>NZ_CP013911.1|WP_049394559.1|2259663_2260863_-|accessory-Sec-system-protein-translocase-subunit-SecY2
MIKKHEYKILYKRILFTCFILIVYIFGSNISIVGSEGIYDNKDTFFKLAVSNVGGDLHTLNVFSLGLGPWLTSLVIIMLLNYRNLDQATKQTRSEKHYKERIITIVFAIFQSYFVISTYIHNNFIKDSNIILLMLILVAGTMLLVWLADQNITYGICGPMPIVLTSLIKSLFNNQHFFKLSVSVLLLILVIVTLVIALLILLFIELSEYRLNYKDIMNNSTNKTPTYLAWKLNPAGSISIMISLSVYVLLNNMINLIATLLGSNANFEFLSFANPIGIMFYIVLQIVLSYLLSRFLINTKKKADEFLKNGNYFDSIRPGRETERYLNSKARRVCWTGGILVALILAVPLYSTLLVPNLSTEIYFSMQLIILVYISINIGETIRTYLYFDRYKQILNKYW
>NZ_CP013911.1|WP_011274656.1|2258079_2259654_-|accessory-Sec-system-protein-Asp1
MKQFIPAWYDSNNWWDSAVVPFYIKRKTTEFDDMVSLMLMHHKNNEPFNTIILNYNPLLRLFLHRHELYEMNYWSLFDEIQGATHGTPVAIDYRELSWPEDTEFIYTPFQVLAIKSDNQFSKMIFSQEGYLICIEDYEHKTLSRKLIFDDRGFVSSIEIYHDGQSPMKRYYLAVKGQIIMTQDFMTEKITIQPEFYDLFQKKSYGNMDELIFEKIQQYNTSTLADDDKVIIAADKRHNYVLTDTFKPENMCFSLFSQRNAYIDATLLETIGKANQCIVDTQANATKLNQFITQNPEYQPFKIMRVTPFDAQMLPNISSQLYETNIGVWIDSLSEEDLKTVIDQLSQYVSQHEQTIIHLLTRLNENDIQQWLRDEIDQLNALLNVEEEEFSPEVQDILQTELEEDEIEKVKLIYVPFEEDLMKELSQLRVIVDLNQEPDLYLQISSISAGVPQINRRETDYVDDKLNGLIIDNIQQLRVALNYFINNLKNWNYSFAHSIKLSDEFSSEKIIQRLNSVIEGEIHGT
>NZ_CP013911.1|WP_049394560.1|2256527_2258090_-|accessory-Sec-system-protein-Asp2
MARKFRILQVGGKDLEPLFDSKKGVEWDYLDDALFTFDSGYIEAVKSIIKAFGNFDLVFVQSAYSPELMDLLRVVATPHNTVIDAQMWSPNYDAEPLIQHKFVKKLNYQTEEDLHHQLLAVTFPGQYGDRVSPIKTTVNPHFQGTYKYEGNKSLVLEGDFGTSFKPIVTWTQSLVSDEDKVNELWPEYSLEGDVEIEYTFRLSPFGSTEYPDTTLRFEHKDLNQPIQLPLRTTQMNVSVSLKAKGKGKLRIGAIHKRWSRLEMGQFIMGGQRFTDEKRDEFIHYFNPSDMKPPLNVYFSGYRPAEGFEGYFMMNKMNAPFILIGDPRLEGGSFYLGSETFEQGIINVIQNALDFLGFKHDELILSGLSMGSFGALYYAAQLEPAAVVVGKPLLNIGTIADNMKLLRPNEFGTANDVLLANTGGISTSDVQHLDSRFWEKLKNSNLTNTIFAIAYMYNDDYDATAFQNLSPVLSQQGSHVMSRGVPGRHNDDSPTITSWFVNFYNIILKDQFGRDSDVSIK
>NZ_CP013911.1|WP_037558374.1|2256001_2256544_-|accessory-Sec-system-protein-Asp3
MSALNSYTLTWRHINTTTFMYGTKLRIEDDGTYFNNPLMPSGTVIHDWRMLTTFSEHKYAPSLPILKKKQHYKVALNYNVKPLGSVYIKITFYRKNDTEHSNLIIQNSDAEFEFPEEAYAYKIELINAGLSELFFKNIIIQELDTDESETQSIVESKVNLDVLNRVIFGESVNARGDQNG
>NZ_CP013911.1|WP_037558373.1|2253618_2256009_-|accessory-Sec-system-translocase-SecA2
MANQVSNVINSMRLKRLQKQLTAVNRLSDQMRDYSDEALQAKTAEFKQRLEKRETTLDKLLPEAYATIREASKRVLGMYPKDVQVMGAIVMHQGNIAEMQTGEGKTLTATMPLYLNALTGKSAFLITTNDYLANRDFQEMRPLYEWLGLTASLGFVDIPDYEYADNEKQMLYNHDIIYTTNGRLGFDYLFDNLADHINAKYLPELNFAIIDEVDSIILDAAQTPLVISGAPRVQSNLFHIIKMFVETLVEDEHFKLNVNKKEVWLTDKGIDVANHYFKVNNIYLPQYFDLVRVINLSLRAKYLFKDNLDYFIYNGEVVLIDRITGRMLPGTKLQSGLHQAIEAKEGVELSQDLSVMATITFQNLFKLFNGFSGMTGTGKLGEKEFFDLYSKLVVEIPTNHPIIRNDKEDRVYAKSDEKNKAILEKVKEIHATKQPVLLITRTAEAAEYFSTQLFKDNIPNNLLIAQNVAKEAQMIAEAGQLGAVTVSTSMAGRGTDIKLGSGVYELGGLAVIINEHMENSRVDRQLRGRSGRQGDPGVSQIYVSLDDYIVKRWSNSKLAENEKLKDVDPDKLQDSPFFRRRVRGIVSKAQRVSEETAMMAREMANEFEKSIGIQRDRVYEERNRILETSDFSAFDFDSLARDVFDYDLRTKHIHNKDDIIKYIYEQLSFSFKDDAISQQIQTREQTIDYLVQQFNKQLKENMKIANNDYFKLRFLQKAILKAIDVEWINQVDQLQQLKASVNNRQNGQRNAIFEYHKVALETYEMMLINIKRATIRNLCLSILTFDKDQDLVVHFP
>NZ_CP013911.1|WP_037558372.1|2252093_2253602_-|accessory-Sec-system-glycosyltransferase-GtfA
MTIYNINFGIGWASSGVEYAQAYRAKLLREVNQPAKFIFLDFISAENIQTLTDNIGFKDDEVIWLYQYFSDIPIAPTTYTVDDLKKDLGNPVTAQVVTGKTMRLYIGNDKSYVSCYLKNEDDIIVDRAEFVVNGMLVRKDYYSYVRTFSEYYAPYENRAKLYKRQFYNEDGSIAYKEYIDGESSVYVFEDARLYSKQEFVAYFMKKLHLTEQDIVIIDRSTEVGQSILEHKGSSKVGIVVHAEHYSENATNDSYILWNNYYEYVFAQAPYIDFYITATDLQNQVLSEQFQKYTSHQPSVRTIPVGSLHQLSYPIGERKRYSMLTASRLASEKHVDWIAKAVIKAKKKVPQLTFDIYGHGNERSRIEEIIKENEAQDYIQLKGHKKLDEIYANYDLFVSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPTFISHGENGYLIPIDKDNQDVEVITNLMAEKIVQYFNNGPKHSHEKSYKIAESFKTEHITQKWQNLIDEVLYD
>NZ_CP013911.1|WP_037558371.1|2250763_2252101_-|accessory-Sec-system-glycosylation-chaperone-GtfB
MINLFEIFDEASQKLQQSLQFAGFKHETIVMDDDGFLPDNVMTPYQFFANYKRNDDDKPAFFNEVQVPPLWEIKGNHNHAEIIDNGNVRGRIFYREHFKNRIVSFVEWFDTKDRLRSVDFYNKDGFKFAETVYDLNKKPILKTYVDRQGKEVLYENFVTKDIILDWQGQSHFFASKQDFISFYLDQIDVDTSTVFINSLATPFFVLYQTNHVSNAVLFWQEQSHGNVPGNMKLLLDKETLNSKVIIPDSAEFESITSNVEAQYRPLISQLGYLYDYQKSNNYNKQVFNLTNSDDLPNLEEIIRQCEDYELHIGAITEMSATLMGLGKYDNVKLYPTITQAKINQLFQTCDIYLDINKGGEIVNAVERAMLHNQLILSYDETAHRRSFIAKKNITKQDEPQQLIDILNEIAKEPRVFKERVIAQQEQNNCIDESTFRNVIMTALNH
>NZ_CP013911.1|WP_037558370.1|2249392_2250391_+|HAMP-domain-containing-histidine-kinase
MRLLKKYYMFMGLGLLSIPLVFLAINSMILLCILFIEKVLGYPIGLNFKSSGLTIIFYIFFFLILITLVIIASRYVYKIVNRLRLLNDKLLDIANSDKLPNKLDIPTHINDEIDEVGQSINILIDRLRFRELEIIENKKQEQNYINQLAHDINTPLTALNLELYQLGFQYQINDNDIELSYEKINYISNLIKALPNKDDISKFYTFNHQVDIQACINTTIDKWHYLLDSKNILTILNVEGNCIYWHGDQLWYERLFDNIISNVYKHSNSSRITIYLNENYITIQDNGIGFNDMSTKSKGLTIIKDICERFSLKLNIKSDSNGTIITIENNRE
>NZ_CP013911.1|WP_033079657.1|2248732_2249389_+|response-regulator-transcription-factor
MEGFHILLVEDDETIAKNLKQILQQKGAQVTLDRTGDSVFNVLNDVHIIIMDIMLPNNDGLSITDEIRSISTIPIIYLSARVDIDSKVKGLNNGDDYLTKPFNPRELISRINNLLTIHYADKEAQFYEFKVNAKDKIIKSNDGNQLSLTKTERRLFFYMYENRDLILTKDQIIDYVWQFESASENTLNAYVKKLRTKLLDSGTIIETIYGIGYRLNGG
>NZ_CP013911.1|WP_011274666.1|2248519_2248711_+|hypothetical-protein
MTGIISSVLLLISMGSLAIAFLTGIYEILSWLRDKDYSPTFKIPVLFFGLYVLFYIPTFILIN
>NZ_CP013911.1|WP_049394846.1|2266980_2267448_-|KxYKxGKxW-signal-peptide-domain-containing-protein
MSRKERNLKRSFGQEKARVKLYKSGKQWVKAGIREVQLLKVLGLPFLNKDVEQINNLDTNKDKNFKNQAMKATGLAGGAFTFAMLNDHHAYAASETPMTSEIASNSETVANQNSTTVTKSETSTTEYISSQTSTSQDATSSTNSTEKKYFIIYNR
>NZ_CP013911.1|WP_037558221.1|2268102_2268585_-|GNAT-family-N-acetyltransferase
MLLRRVTEEDLFSLIKLENEGFTPDEAATPEALKQRINKIPDTFIIAEKEGRIIGYINGPVINQRYITDDLFEEIQSNPNSGGYLSVLGLVVNKDYQRQGIAGKLLEQFEKLAKQQVRCGVTLTCREALVSLYERYGYNNEGESTSQHAGIKWYNMVKEV
>NZ_CP013911.1|WP_011274651.1|2270170_2270548_-|hypothetical-protein
MENVNSNKYRNDEFYGSRNENIASSISYLSVFFAPVLLPIVMWIIADKPVSIHARKALFNHILTWVCFTLAPLALMLSASVMGNASTNTESWIVFGSWTIAVVLVVVGVYLFIKNIIRGIKLLLV
>NZ_CP013911.1|WP_037558223.1|2271003_2271831_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MTQNKDNLEQKFPIKSKKHKQKIIKNWIIAIVVLAIIAWGFVGMPALELKSKSIEILKSIFHGLFHPDWGYVYIPAGEDLLRGLLETFAIAVIGTFIAAIICIPFAFLGAQNLIKIRPVTGITKFLLSVIRVFPEIVMALIFIKAVGPGSFSGVLALGIHSVGMLGKLFVEDIERLDFTSVEALKASGANKTKTLIFAVIPQILPSFLSLVLYRFELNLRSASILGLIGAGGIGTPLIFALQTRSWDRVGIILIGLVIMVAIVDLISGAIRKRIV
>NZ_CP013911.1|WP_011274649.1|2271827_2272628_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MTTPTTSKYDEYLNKKFSLKTSFTIFLVLALIIWSFLYTGFSFADLMVGLPQIGSFFGQMVPPDWAYIHTILKPMLDTIRMAIVGTFLGAIVSIPIALICASNIVKTKWISIPARFILNIVRTIPDLLLAAIFVAVFGIGQIPGVLALFILTICVIAKLLYEALETIDPGPMEAMTAVGANKTKWIVFGVVPQILSTFFSYVLFAFEINIRASAVLGLVGAGGIGLFYDSTLGLFQYPKTAMIILFTLVIVVIIDYVSSKVREQLA
>NZ_CP013911.1|WP_011274648.1|2272629_2273403_-|phosphonate-ABC-transporter-ATP-binding-protein
MSQIEFKDVNKVYPNGHVGLKDINLNIEKGDFAVIVGLSGAGKSTLLRSVNRLHDITSGDILIEGKSITKAKGNDLLMMRRNIGMIFQHFNLVKRSSVLRNVLSGRVGYHPTWKMVLGLFPKEDKVKAMDALERVNILDKYDQRSDELSGGQQQRISIARALAQEPAIILADEPVASLDPLTTKQVMDDLKKINEELGITILINLHFVDLALEYGTRIIGLRAGELVFDGPASEATEEVFNDIYGRKLKDDEKLGVE
>NZ_CP013911.1|WP_011274647.1|2273679_2274639_-|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MKQMKYLLVLALTVIIFAAACGNNSSLDSNNKSSDSGSDSGKDGYKPKELTVQFVPSQNADTLEAKAKPLEKLLSKKLDIPVKVSVSTNYNTIVEAMKSKKVDVGFLPPTAYTLAHDQKAADLLLKAQRYGVNEDGSNSKKLVDDYKSEILVKKDSGINSLKDLKGKKIALQDVTSTAGYTFPISTLKEEAGIDATKDMKIVNVKGHDQAVISLLNGDVDAAAVFQDARTIVKKDQPNVFKDTKIIKLTEPIPNDTISVRPDMDKAFQDKLKKAFKDIAKTKEGHKIISEVYSHEGYTDAKDSDFDIVRKYEKQVQDMK
>NZ_CP013911.1|WP_011274646.1|2274948_2276490_+|bifunctional-metallophosphatase/5'-nucleotidase
MTQLSFYIVSDVHGYIFPTDFSKTNQQLPMGLLYANLLIEQSSKNDDIYFKIDNGDFLQGAPLCNYLVSELRSSKPLTTIYNRLNFDLGTIGNHEFNYGLPYLIDTLQNLNHPVLCANILDSKQQPFTGEGVHYFEKEGLTIGVIGLTTQNIPNWEQPHHIEGLIFKSAIETLTQLLPNVREKADIVVVSYHGGFERDIDTEEPTEDLTGENEASEILHRFHESIDVLITGHQHRDIATVKYETAVIQPGTRATQIGKVTLTIGDNNQIIDTQSELLPVVGDSEYSLLPEDSKLLTHLEDWLDTEITTLPEPMLVEDQFEARMKPHPLINLINVMLLEKSGADIASTALFDSAAGFNKRITMRDIINNYPFPNTFQVLKLTGAGIKDALEKSASYFTLNDKNEITINDAFLYPKPQHFNYDMYGGITYTIHVREPIGQRVTDIKVGNEPLISDKTYTICVNNYRAVGGGNYDMFAEAPVVKDIQEEGAQLLIDFITNNDISNIPQVLNFKVEL
>NZ_CP013911.1|WP_049394811.1|2276563_2277127_+|hypothetical-protein
MSEFLAAIVGGIFALIGTFWGIKYQITKEKEEKREDYKNDILSMIDLTAYKASKISKIHLSETNALINKPQTLEKCDDVEGLFVKLDDQIQELLGTMSHHEEESNKPIRDLLNCYESLENYISKFSIAARIYNDKYETNSDDKRVIIVKTKEKLDRNIDTFINDLRQFSKHHFNHDMYEPTLKFESE
>NZ_CP013911.1|WP_011274644.1|2277197_2278367_-|MFS-transporter
MKGNRMMFFIFMLGTFTVGMAEYVVTGLLTQIASDMKVSISSAGLLISVYAVSVALIGPFMRIFTMNVRAKRLLPILVAIFIGSNVVGMLAPNFQVLLLSRLLSASMHAPFFGVCMSVAAAVAPRGKQPQAIALVQAGLTIAVMIGVPFGSFLGGFANWRAVFGVMIGLAIITMLGMLKFVPDVSLSTESNVKNELKVFKNPHILIVMSIIVFGYSGVFTTYTFMEPMIHDFAPFKIVGLTICLFMFGLGGVLGNLITGNVPEPKLTKYLFYTFLLLFLTIVLFVTFVHNAILAIIICFLFGFGTFGTTPLLNSKIILSAKEAPLLASTLAASIFNVANFLGAIIGSILLSIGLPYLMITFVSGGIIILGILINAVNYFYEKKHFQFEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013911_1	1.1\|645588\|27\|NZ_CP013911\|CRISPRCasFinder	645588-645614	27	MN693238	Marine virus AFVG_25M402, complete genome	24675-24701	6	0.778
NZ_CP013911_3	3.6\|2261937\|34\|NZ_CP013911\|CRT	2261937-2261970	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.13\|2262315\|34\|NZ_CP013911\|CRT	2262315-2262348	34	NC_011777	Bacillus cereus AH820 plasmid pAH820_272, complete sequence	83650-83683	9	0.735
NZ_CP013911_3	3.13\|2262315\|34\|NZ_CP013911\|CRT	2262315-2262348	34	MN693262	Marine virus AFVG_25M29, complete genome	44447-44480	9	0.735
NZ_CP013911_3	3.15\|2262423\|34\|NZ_CP013911\|CRT	2262423-2262456	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.17\|2262531\|34\|NZ_CP013911\|CRT	2262531-2262564	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.24\|2262909\|34\|NZ_CP013911\|CRT	2262909-2262942	34	NC_011777	Bacillus cereus AH820 plasmid pAH820_272, complete sequence	83650-83683	9	0.735
NZ_CP013911_3	3.24\|2262909\|34\|NZ_CP013911\|CRT	2262909-2262942	34	MN693262	Marine virus AFVG_25M29, complete genome	44447-44480	9	0.735
NZ_CP013911_3	3.30\|2263233\|34\|NZ_CP013911\|CRT	2263233-2263266	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.32\|2263341\|34\|NZ_CP013911\|CRT	2263341-2263374	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.37\|2263611\|34\|NZ_CP013911\|CRT	2263611-2263644	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.39\|2263719\|34\|NZ_CP013911\|CRT	2263719-2263752	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.49\|2264259\|34\|NZ_CP013911\|CRT	2264259-2264292	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.51\|2264367\|34\|NZ_CP013911\|CRT	2264367-2264400	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.56\|2264637\|34\|NZ_CP013911\|CRT	2264637-2264670	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.59\|2264799\|34\|NZ_CP013911\|CRT	2264799-2264832	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.61\|2264907\|34\|NZ_CP013911\|CRT	2264907-2264940	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.71\|2265447\|34\|NZ_CP013911\|CRT	2265447-2265480	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.72\|2265501\|34\|NZ_CP013911\|CRT	2265501-2265534	34	NZ_CP046029	Staphylococcus chromogenes strain 1401 plasmid unnamed1	30572-30605	9	0.735
NZ_CP013911_3	3.2\|2261721\|34\|NZ_CP013911\|CRT	2261721-2261754	34	NZ_LT571450	Staphylococcus epidermidis isolate BPH0662 plasmid 2	6502-6535	10	0.706
NZ_CP013911_3	3.2\|2261721\|34\|NZ_CP013911\|CRT	2261721-2261754	34	NZ_LT571450	Staphylococcus epidermidis isolate BPH0662 plasmid 2	6814-6847	10	0.706
NZ_CP013911_3	3.2\|2261721\|34\|NZ_CP013911\|CRT	2261721-2261754	34	NZ_LT571450	Staphylococcus epidermidis isolate BPH0662 plasmid 2	7474-7507	10	0.706
NZ_CP013911_3	3.5\|2261883\|34\|NZ_CP013911\|CRT	2261883-2261916	34	MK448933	Streptococcus phage Javan420, complete genome	36622-36655	10	0.706
NZ_CP013911_3	3.8\|2262045\|34\|NZ_CP013911\|CRT	2262045-2262078	34	NC_013381	Staphylococcus epidermidis plasmid SAP107A, complete sequence	40371-40404	10	0.706
NZ_CP013911_3	3.8\|2262045\|34\|NZ_CP013911\|CRT	2262045-2262078	34	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	47513-47546	10	0.706
NZ_CP013911_3	3.8\|2262045\|34\|NZ_CP013911\|CRT	2262045-2262078	34	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	49475-49508	10	0.706
NZ_CP013911_3	3.8\|2262045\|34\|NZ_CP013911\|CRT	2262045-2262078	34	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	49769-49802	10	0.706
NZ_CP013911_3	3.8\|2262045\|34\|NZ_CP013911\|CRT	2262045-2262078	34	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	50519-50552	10	0.706
NZ_CP013911_3	3.10\|2262153\|34\|NZ_CP013911\|CRT	2262153-2262186	34	MK448933	Streptococcus phage Javan420, complete genome	36622-36655	10	0.706
NZ_CP013911_3	3.13\|2262315\|34\|NZ_CP013911\|CRT	2262315-2262348	34	MK448933	Streptococcus phage Javan420, complete genome	36622-36655	10	0.706
NZ_CP013911_3	3.19\|2262639\|34\|NZ_CP013911\|CRT	2262639-2262672	34	NC_013381	Staphylococcus epidermidis plasmid SAP107A, complete sequence	40371-40404	10	0.706
NZ_CP013911_3	3.19\|2262639\|34\|NZ_CP013911\|CRT	2262639-2262672	34	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	47513-47546	10	0.706
NZ_CP013911_3	3.19\|2262639\|34\|NZ_CP013911\|CRT	2262639-2262672	34	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	49475-49508	10	0.706
NZ_CP013911_3	3.19\|2262639\|34\|NZ_CP013911\|CRT	2262639-2262672	34	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	49769-49802	10	0.706
NZ_CP013911_3	3.19\|2262639\|34\|NZ_CP013911\|CRT	2262639-2262672	34	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	50519-50552	10	0.706
NZ_CP013911_3	3.21\|2262747\|34\|NZ_CP013911\|CRT	2262747-2262780	34	MK448933	Streptococcus phage Javan420, complete genome	36622-36655	10	0.706
NZ_CP013911_3	3.24\|2262909\|34\|NZ_CP013911\|CRT	2262909-2262942	34	MK448933	Streptococcus phage Javan420, complete genome	36622-36655	10	0.706
NZ_CP013911_3	3.35\|2263503\|34\|NZ_CP013911\|CRT	2263503-2263536	34	KU682439	Stenotrophomonas phage vB_SmaS-DLP_6, complete genome	155872-155905	10	0.706
NZ_CP013911_3	3.41\|2263827\|34\|NZ_CP013911\|CRT	2263827-2263860	34	NC_006557	Bacillus phage BCJA1c, complete genome	40851-40884	10	0.706
NZ_CP013911_3	3.41\|2263827\|34\|NZ_CP013911\|CRT	2263827-2263860	34	AY616446	Bacillus clarkii bacteriophage BCJA1c, complete genome	40851-40884	10	0.706
NZ_CP013911_3	3.41\|2263827\|34\|NZ_CP013911\|CRT	2263827-2263860	34	KF623293	Vibrio phage SHOU24, complete genome	41506-41539	10	0.706
NZ_CP013911_3	3.44\|2263989\|34\|NZ_CP013911\|CRT	2263989-2264022	34	NC_006557	Bacillus phage BCJA1c, complete genome	40851-40884	10	0.706
NZ_CP013911_3	3.44\|2263989\|34\|NZ_CP013911\|CRT	2263989-2264022	34	AY616446	Bacillus clarkii bacteriophage BCJA1c, complete genome	40851-40884	10	0.706
NZ_CP013911_3	3.44\|2263989\|34\|NZ_CP013911\|CRT	2263989-2264022	34	KF623293	Vibrio phage SHOU24, complete genome	41506-41539	10	0.706
NZ_CP013911_3	3.54\|2264529\|34\|NZ_CP013911\|CRT	2264529-2264562	34	KU682439	Stenotrophomonas phage vB_SmaS-DLP_6, complete genome	155872-155905	10	0.706
NZ_CP013911_3	3.70\|2265393\|34\|NZ_CP013911\|CRT	2265393-2265426	34	NC_013381	Staphylococcus epidermidis plasmid SAP107A, complete sequence	40371-40404	10	0.706
NZ_CP013911_3	3.70\|2265393\|34\|NZ_CP013911\|CRT	2265393-2265426	34	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	47513-47546	10	0.706
NZ_CP013911_3	3.70\|2265393\|34\|NZ_CP013911\|CRT	2265393-2265426	34	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	49475-49508	10	0.706
NZ_CP013911_3	3.70\|2265393\|34\|NZ_CP013911\|CRT	2265393-2265426	34	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	49769-49802	10	0.706
NZ_CP013911_3	3.70\|2265393\|34\|NZ_CP013911\|CRT	2265393-2265426	34	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	50519-50552	10	0.706
NZ_CP013911_3	3.5\|2261883\|34\|NZ_CP013911\|CRT	2261883-2261916	34	NC_006557	Bacillus phage BCJA1c, complete genome	40851-40884	11	0.676
NZ_CP013911_3	3.5\|2261883\|34\|NZ_CP013911\|CRT	2261883-2261916	34	AY616446	Bacillus clarkii bacteriophage BCJA1c, complete genome	40851-40884	11	0.676
NZ_CP013911_3	3.10\|2262153\|34\|NZ_CP013911\|CRT	2262153-2262186	34	NC_006557	Bacillus phage BCJA1c, complete genome	40851-40884	11	0.676
NZ_CP013911_3	3.10\|2262153\|34\|NZ_CP013911\|CRT	2262153-2262186	34	AY616446	Bacillus clarkii bacteriophage BCJA1c, complete genome	40851-40884	11	0.676
NZ_CP013911_3	3.11\|2262207\|34\|NZ_CP013911\|CRT	2262207-2262240	34	CP040041	Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence	114574-114607	11	0.676
NZ_CP013911_3	3.16\|2262477\|34\|NZ_CP013911\|CRT	2262477-2262510	34	CP040041	Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence	114574-114607	11	0.676
NZ_CP013911_3	3.21\|2262747\|34\|NZ_CP013911\|CRT	2262747-2262780	34	NC_006557	Bacillus phage BCJA1c, complete genome	40851-40884	11	0.676
NZ_CP013911_3	3.21\|2262747\|34\|NZ_CP013911\|CRT	2262747-2262780	34	AY616446	Bacillus clarkii bacteriophage BCJA1c, complete genome	40851-40884	11	0.676
NZ_CP013911_3	3.22\|2262801\|34\|NZ_CP013911\|CRT	2262801-2262834	34	CP040041	Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence	114574-114607	11	0.676
NZ_CP013911_3	3.41\|2263827\|34\|NZ_CP013911\|CRT	2263827-2263860	34	MK448933	Streptococcus phage Javan420, complete genome	36622-36655	11	0.676
NZ_CP013911_3	3.44\|2263989\|34\|NZ_CP013911\|CRT	2263989-2264022	34	MK448933	Streptococcus phage Javan420, complete genome	36622-36655	11	0.676

1. spacer 1.1|645588|27|NZ_CP013911|CRISPRCasFinder matches to MN693238 (Marine virus AFVG_25M402, complete genome) position: , mismatch: 6, identity: 0.778

cacaagcaaagcaggctggggttgggg	CRISPR spacer
cacaagcaacgcaggctgggattctta	Protospacer
********* **********.**   .

2. spacer 3.6|2261937|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgaaagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

3. spacer 3.13|2262315|34|NZ_CP013911|CRT matches to NC_011777 (Bacillus cereus AH820 plasmid pAH820_272, complete sequence) position: , mismatch: 9, identity: 0.735

actcacacttgttgatgttgatgcactcaatgat	CRISPR spacer
ccaatcactagttgatgttgatgcagtcagtttt	Protospacer
 *   **** *************** ***.*  *

4. spacer 3.13|2262315|34|NZ_CP013911|CRT matches to MN693262 (Marine virus AFVG_25M29, complete genome) position: , mismatch: 9, identity: 0.735

actcacactt----gttgatgttgatgcactcaatgat	CRISPR spacer
----aggttttaaagtagatgttgatgtactcaatgat	Protospacer
    * ..**    ** **********.**********

5. spacer 3.15|2262423|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgaaagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

6. spacer 3.17|2262531|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgaaagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

7. spacer 3.24|2262909|34|NZ_CP013911|CRT matches to NC_011777 (Bacillus cereus AH820 plasmid pAH820_272, complete sequence) position: , mismatch: 9, identity: 0.735

actcacacttgttgatgttgatgcactcaatgat	CRISPR spacer
ccaatcactagttgatgttgatgcagtcagtttt	Protospacer
 *   **** *************** ***.*  *

8. spacer 3.24|2262909|34|NZ_CP013911|CRT matches to MN693262 (Marine virus AFVG_25M29, complete genome) position: , mismatch: 9, identity: 0.735

actcacactt----gttgatgttgatgcactcaatgat	CRISPR spacer
----aggttttaaagtagatgttgatgtactcaatgat	Protospacer
    * ..**    ** **********.**********

9. spacer 3.30|2263233|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgaaagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

10. spacer 3.32|2263341|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgaaagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

11. spacer 3.37|2263611|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgaaagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

12. spacer 3.39|2263719|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgaaagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

13. spacer 3.49|2264259|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgaaagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

14. spacer 3.51|2264367|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgaaagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

15. spacer 3.56|2264637|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgaaagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

16. spacer 3.59|2264799|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgaaagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

17. spacer 3.61|2264907|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgaaagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

18. spacer 3.71|2265447|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgagagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

19. spacer 3.72|2265501|34|NZ_CP013911|CRT matches to NZ_CP046029 (Staphylococcus chromogenes strain 1401 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tgagagact------cgtacttgttgattcacttaatgac	CRISPR spacer
------acttgtcgacgtacttgttgatgcactcaatgag	Protospacer
      ***      ************* ****.*****

20. spacer 3.2|2261721|34|NZ_CP013911|CRT matches to NZ_LT571450 (Staphylococcus epidermidis isolate BPH0662 plasmid 2) position: , mismatch: 10, identity: 0.706

actcacacttgttgacgttgattcacttgatgat	CRISPR spacer
agatgcacttgttgacgctgattcgcttgcactt	Protospacer
*  ..************.******.****    *

21. spacer 3.2|2261721|34|NZ_CP013911|CRT matches to NZ_LT571450 (Staphylococcus epidermidis isolate BPH0662 plasmid 2) position: , mismatch: 10, identity: 0.706

actcacacttgttgacgttgattcacttgatgat	CRISPR spacer
agatgcacttgttgacgctgattcgcttgcactt	Protospacer
*  ..************.******.****    *

22. spacer 3.2|2261721|34|NZ_CP013911|CRT matches to NZ_LT571450 (Staphylococcus epidermidis isolate BPH0662 plasmid 2) position: , mismatch: 10, identity: 0.706

actcacacttgttgacgttgattcacttgatgat	CRISPR spacer
agatgcacttgttgacgctgattcgcttgcactt	Protospacer
*  ..************.******.****    *

23. spacer 3.5|2261883|34|NZ_CP013911|CRT matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 10, identity: 0.706

actcacgcttgttgatgttgatccacttaatgat	CRISPR spacer
aaaaaatagtgttgatgttgatgcaattaatgaa	Protospacer
*   *    ************* ** *******

24. spacer 3.8|2262045|34|NZ_CP013911|CRT matches to NC_013381 (Staphylococcus epidermidis plasmid SAP107A, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

25. spacer 3.8|2262045|34|NZ_CP013911|CRT matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

26. spacer 3.8|2262045|34|NZ_CP013911|CRT matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

27. spacer 3.8|2262045|34|NZ_CP013911|CRT matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

28. spacer 3.8|2262045|34|NZ_CP013911|CRT matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

29. spacer 3.10|2262153|34|NZ_CP013911|CRT matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 10, identity: 0.706

actcacgcttgttgatgttgatccacttaatgac	CRISPR spacer
aaaaaatagtgttgatgttgatgcaattaatgaa	Protospacer
*   *    ************* ** *******

30. spacer 3.13|2262315|34|NZ_CP013911|CRT matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 10, identity: 0.706

actcacacttgttgatgttgatgcactcaatgat	CRISPR spacer
aaaaaatagtgttgatgttgatgcaattaatgaa	Protospacer
*   *    **************** *.*****

31. spacer 3.19|2262639|34|NZ_CP013911|CRT matches to NC_013381 (Staphylococcus epidermidis plasmid SAP107A, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

32. spacer 3.19|2262639|34|NZ_CP013911|CRT matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

33. spacer 3.19|2262639|34|NZ_CP013911|CRT matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

34. spacer 3.19|2262639|34|NZ_CP013911|CRT matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

35. spacer 3.19|2262639|34|NZ_CP013911|CRT matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

36. spacer 3.21|2262747|34|NZ_CP013911|CRT matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 10, identity: 0.706

actcacgcttgttgatgttgatccacttaatgac	CRISPR spacer
aaaaaatagtgttgatgttgatgcaattaatgaa	Protospacer
*   *    ************* ** *******

37. spacer 3.24|2262909|34|NZ_CP013911|CRT matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 10, identity: 0.706

actcacacttgttgatgttgatgcactcaatgat	CRISPR spacer
aaaaaatagtgttgatgttgatgcaattaatgaa	Protospacer
*   *    **************** *.*****

38. spacer 3.35|2263503|34|NZ_CP013911|CRT matches to KU682439 (Stenotrophomonas phage vB_SmaS-DLP_6, complete genome) position: , mismatch: 10, identity: 0.706

actcacgcttgttgatgtagatgcactaactgat	CRISPR spacer
gagcacgattgttgttgtagatgcacttgaagac	Protospacer
.  **** ****** ************ .  **.

39. spacer 3.41|2263827|34|NZ_CP013911|CRT matches to NC_006557 (Bacillus phage BCJA1c, complete genome) position: , mismatch: 10, identity: 0.706

gctcacacttgttgatgttgatccacttaatgac	CRISPR spacer
gatggttattgttgatgttgatcgtcttaatgta	Protospacer
* * ..  ***************  *******

40. spacer 3.41|2263827|34|NZ_CP013911|CRT matches to AY616446 (Bacillus clarkii bacteriophage BCJA1c, complete genome) position: , mismatch: 10, identity: 0.706

gctcacacttgttgatgttgatccacttaatgac	CRISPR spacer
gatggttattgttgatgttgatcgtcttaatgta	Protospacer
* * ..  ***************  *******

41. spacer 3.41|2263827|34|NZ_CP013911|CRT matches to KF623293 (Vibrio phage SHOU24, complete genome) position: , mismatch: 10, identity: 0.706

gctcacacttgttgatgttgatccacttaatgac	CRISPR spacer
cctcacacttggtgatgttaatccagaagtcgcc	Protospacer
 ********** *******.*****   . .* *

42. spacer 3.44|2263989|34|NZ_CP013911|CRT matches to NC_006557 (Bacillus phage BCJA1c, complete genome) position: , mismatch: 10, identity: 0.706

gctcacacttgttgatgttgatccacttaatgac	CRISPR spacer
gatggttattgttgatgttgatcgtcttaatgta	Protospacer
* * ..  ***************  *******

43. spacer 3.44|2263989|34|NZ_CP013911|CRT matches to AY616446 (Bacillus clarkii bacteriophage BCJA1c, complete genome) position: , mismatch: 10, identity: 0.706

gctcacacttgttgatgttgatccacttaatgac	CRISPR spacer
gatggttattgttgatgttgatcgtcttaatgta	Protospacer
* * ..  ***************  *******

44. spacer 3.44|2263989|34|NZ_CP013911|CRT matches to KF623293 (Vibrio phage SHOU24, complete genome) position: , mismatch: 10, identity: 0.706

gctcacacttgttgatgttgatccacttaatgac	CRISPR spacer
cctcacacttggtgatgttaatccagaagtcgcc	Protospacer
 ********** *******.*****   . .* *

45. spacer 3.54|2264529|34|NZ_CP013911|CRT matches to KU682439 (Stenotrophomonas phage vB_SmaS-DLP_6, complete genome) position: , mismatch: 10, identity: 0.706

actcacgcttgttgatgtagatgcactaactgat	CRISPR spacer
gagcacgattgttgttgtagatgcacttgaagac	Protospacer
.  **** ****** ************ .  **.

46. spacer 3.70|2265393|34|NZ_CP013911|CRT matches to NC_013381 (Staphylococcus epidermidis plasmid SAP107A, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

47. spacer 3.70|2265393|34|NZ_CP013911|CRT matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

48. spacer 3.70|2265393|34|NZ_CP013911|CRT matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

49. spacer 3.70|2265393|34|NZ_CP013911|CRT matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

50. spacer 3.70|2265393|34|NZ_CP013911|CRT matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

actcacgcttgttgacgctgaatcacttaatgat	CRISPR spacer
agacacgcttgttgacgttgaatcgctcgcactt	Protospacer
*  **************.******.**..    *

51. spacer 3.5|2261883|34|NZ_CP013911|CRT matches to NC_006557 (Bacillus phage BCJA1c, complete genome) position: , mismatch: 11, identity: 0.676

actcacgcttgttgatgttgatccacttaatgat	CRISPR spacer
gatggttattgttgatgttgatcgtcttaatgta	Protospacer
. * ..  ***************  *******

52. spacer 3.5|2261883|34|NZ_CP013911|CRT matches to AY616446 (Bacillus clarkii bacteriophage BCJA1c, complete genome) position: , mismatch: 11, identity: 0.676

actcacgcttgttgatgttgatccacttaatgat	CRISPR spacer
gatggttattgttgatgttgatcgtcttaatgta	Protospacer
. * ..  ***************  *******

53. spacer 3.10|2262153|34|NZ_CP013911|CRT matches to NC_006557 (Bacillus phage BCJA1c, complete genome) position: , mismatch: 11, identity: 0.676

actcacgcttgttgatgttgatccacttaatgac	CRISPR spacer
gatggttattgttgatgttgatcgtcttaatgta	Protospacer
. * ..  ***************  *******

54. spacer 3.10|2262153|34|NZ_CP013911|CRT matches to AY616446 (Bacillus clarkii bacteriophage BCJA1c, complete genome) position: , mismatch: 11, identity: 0.676

actcacgcttgttgatgttgatccacttaatgac	CRISPR spacer
gatggttattgttgatgttgatcgtcttaatgta	Protospacer
. * ..  ***************  *******

55. spacer 3.11|2262207|34|NZ_CP013911|CRT matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

actcacacttgttgatgttgatgcactaactgat	CRISPR spacer
tgcggcacttggtgatgttgatgaactaaacgcc	Protospacer
  . .****** *********** ***** .* .

56. spacer 3.16|2262477|34|NZ_CP013911|CRT matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

actcacacttgttgatgttgatgcactaactgat	CRISPR spacer
tgcggcacttggtgatgttgatgaactaaacgcc	Protospacer
  . .****** *********** ***** .* .

57. spacer 3.21|2262747|34|NZ_CP013911|CRT matches to NC_006557 (Bacillus phage BCJA1c, complete genome) position: , mismatch: 11, identity: 0.676

actcacgcttgttgatgttgatccacttaatgac	CRISPR spacer
gatggttattgttgatgttgatcgtcttaatgta	Protospacer
. * ..  ***************  *******

58. spacer 3.21|2262747|34|NZ_CP013911|CRT matches to AY616446 (Bacillus clarkii bacteriophage BCJA1c, complete genome) position: , mismatch: 11, identity: 0.676

actcacgcttgttgatgttgatccacttaatgac	CRISPR spacer
gatggttattgttgatgttgatcgtcttaatgta	Protospacer
. * ..  ***************  *******

59. spacer 3.22|2262801|34|NZ_CP013911|CRT matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

actcacacttgttgatgttgatgcactaactgat	CRISPR spacer
tgcggcacttggtgatgttgatgaactaaacgcc	Protospacer
  . .****** *********** ***** .* .

60. spacer 3.41|2263827|34|NZ_CP013911|CRT matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 11, identity: 0.676

gctcacacttgttgatgttgatccacttaatgac	CRISPR spacer
aaaaaatagtgttgatgttgatgcaattaatgaa	Protospacer
.   *    ************* ** *******

61. spacer 3.44|2263989|34|NZ_CP013911|CRT matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 11, identity: 0.676

gctcacacttgttgatgttgatccacttaatgac	CRISPR spacer
aaaaaatagtgttgatgttgatgcaattaatgaa	Protospacer
.   *    ************* ** *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

48225 : 56633

uncultured_Caudovirales_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053033294.1\|48225_49056_+	ParB/RepB/Spo0J family partition protein	S5VTK0	Leptospira_phage	5.6e-15	37.7
WP_053038692.1\|49236_50118_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_011276871.1\|50139_50343_+	DUF951 domain-containing protein	NA	NA	NA	NA
WP_011276870.1\|50354_51452_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_053038693.1\|51593_51785_-	hypothetical protein	A0A2H4JGI3	uncultured_Caudovirales_phage	3.4e-24	85.0
WP_053021777.1\|51850_52657_-	lysozyme	A0A2P0ZKX1	Lactobacillus_phage	9.6e-36	43.3
WP_011276867.1\|52947_53244_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_011276866.1\|53265_53778_+	single-stranded DNA-binding protein	A0A2H4JCF2	uncultured_Caudovirales_phage	3.2e-61	88.3
WP_002447994.1\|53825_54068_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_052151825.1\|54285_55356_-	Ltp family lipoprotein	A0A0A1ERB0	Lactobacillus_phage	8.1e-06	55.3
WP_000195429.1\|55460_56633_-\|transposase	IS256-like element IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0

DBSCAN-SWA_2

108046 : 116465

uncultured_Caudovirales_phage(57.14%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053019976.1\|108046_108319_+	hypothetical protein	Q4ZE77	Staphylococcus_phage	4.1e-15	37.8
WP_053019978.1\|108488_108893_+	hypothetical protein	A0A2H4JBF1	uncultured_Caudovirales_phage	7.9e-63	92.5
WP_011276360.1\|108897_109101_+	hypothetical protein	A0A2H4JHV9	uncultured_Caudovirales_phage	9.1e-28	97.0
WP_053019980.1\|109115_109421_+	DUF1474 family protein	A0A2H4JB50	uncultured_Caudovirales_phage	1.9e-37	81.1
WP_053019982.1\|109509_110379_+	primase alpha helix C-terminal domain-containing protein	A0A2H4JEH3	uncultured_Caudovirales_phage	3.8e-171	98.6
WP_053019984.1\|110390_111746_+	DNA primase family protein	A0A2H4JBE3	uncultured_Caudovirales_phage	2.7e-240	91.6
WP_053019988.1\|111994_112348_+	hypothetical protein	A0A2H4JBD4	uncultured_Caudovirales_phage	2.3e-42	66.4
WP_053019990.1\|112340_112697_+	hypothetical protein	Q4ZE71	Staphylococcus_phage	7.0e-15	38.6
WP_053019992.1\|112697_113339_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	8.6e-88	73.7
WP_080366117.1\|113677_114016_+	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	6.2e-37	69.6
WP_053019996.1\|114040_114748_+	hypothetical protein	Q4ZE82	Staphylococcus_phage	4.5e-37	35.2
WP_053020002.1\|114810_115269_+	pathogenicity island protein	A0A1W6JQH7	Staphylococcus_phage	6.0e-35	57.4
WP_049395133.1\|115271_115658_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_053020005.1\|115617_116193_+\|terminase	terminase small subunit	A0A2H4JBF3	uncultured_Caudovirales_phage	2.7e-77	72.6
WP_053020006.1\|116195_116465_+	hypothetical protein	A0A2H4JBE4	uncultured_Caudovirales_phage	9.6e-41	92.1

DBSCAN-SWA_3

431830 : 439978

Staphylococcus_phage(12.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011276452.1\|431830_432670_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.6e-62	44.4
WP_011274424.1\|432723_434040_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	5.4e-44	32.0
WP_011276451.1\|434328_435318_+	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	5.3e-60	41.2
WP_011276450.1\|435368_435980_-	hypothetical protein	NA	NA	NA	NA
WP_011276449.1\|436084_436801_-	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	1.6e-50	41.9
WP_011276448.1\|436800_437220_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	2.2e-07	26.9
WP_011276447.1\|437221_437893_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.4e-64	55.9
WP_011276446.1\|438255_438849_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	7.1e-36	40.1
WP_016930964.1\|438832_439978_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	5.4e-24	34.9

DBSCAN-SWA_4

454274 : 468207

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033079624.1\|454274_455330_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	2.8e-19	26.7
WP_011276430.1\|455504_456038_+	5'-3'-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	8.0e-31	39.0
WP_037558381.1\|456110_457037_-	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA
WP_011276428.1\|457713_459219_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.9e-61	32.7
WP_011276427.1\|459519_460020_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.7e-51	70.8
WP_037558382.1\|460025_460910_-	DMT family transporter	NA	NA	NA	NA
WP_011276425.1\|461698_462097_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.9e-53	75.8
WP_011276424.1\|462059_464165_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	94.0
WP_011276423.1\|464292_465261_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	1.4e-177	94.7
WP_011276422.1\|465510_466479_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.7e-151	88.5
WP_011276421.1\|466468_467428_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	5.7e-11	72.0
WP_011276420.1\|467424_468207_+	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	1.4e-15	29.6

DBSCAN-SWA_5

520005 : 564172

Staphylococcus_phage(72.73%)

head,capsid,portal,protease,terminase,integrase,tail

attL 515386:515402|attR 531419:531435

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
515386:515402	attL	NA	NA	NA	NA
WP_037558391.1\|520005_522384_+	ribonuclease R	Q0GXV6	Lactococcus_phage	2.4e-90	38.0
WP_011276368.1\|522408_522879_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.5e-70	86.5
WP_053018063.1\|523496_524546_-\|integrase	site-specific integrase	A0A1W6JNC2	Staphylococcus_phage	6.3e-197	100.0
WP_062931911.1\|524604_525114_-	hypothetical protein	NA	NA	NA	NA
WP_011276083.1\|525195_525867_-	ImmA/IrrE family metallo-endopeptidase	A0A0F6N3H6	Staphylococcus_phage	2.2e-46	44.8
WP_002442276.1\|525880_526219_-	helix-turn-helix transcriptional regulator	R4IH08	Staphylococcus_phage	1.7e-42	74.5
WP_062931912.1\|526482_526677_+	helix-turn-helix transcriptional regulator	A0A0F6N3M9	Staphylococcus_phage	3.2e-22	85.9
WP_062931913.1\|526676_527468_+	antA/AntB antirepressor family protein	A0A2H4J5J5	uncultured_Caudovirales_phage	7.0e-116	79.8
WP_062931914.1\|527672_528140_-	DUF2321 domain-containing protein	A0A1Q1PVY6	Staphylococcus_phage	7.2e-52	59.4
WP_062931915.1\|528203_528416_+	hypothetical protein	A0A1W6JNG8	Staphylococcus_phage	9.9e-25	90.6
WP_062931916.1\|528429_528621_+	hypothetical protein	A0A1W6JQF5	Staphylococcus_phage	1.5e-19	89.8
WP_062931917.1\|528683_528989_+	hypothetical protein	A0A2I6PEL3	Staphylococcus_phage	1.5e-18	64.9
WP_062931918.1\|528972_529458_+	siphovirus Gp157 family protein	A0A2H4JD18	uncultured_Caudovirales_phage	1.9e-79	96.9
WP_062931919.1\|529458_530163_+	AAA family ATPase	A0A1W6JQH5	Staphylococcus_phage	8.4e-129	96.5
WP_062931920.1\|530146_531493_+	DEAD/DEAH box helicase family protein	Q9T1H9	Lactobacillus_phage	2.7e-123	50.9
531419:531435	attR	NA	NA	NA	NA
WP_062931921.1\|531498_532002_+	AP2 domain-containing protein	A0A0H3UZ74	Geobacillus_virus	9.0e-08	50.8
WP_062931922.1\|532004_532508_+	DUF669 domain-containing protein	A8ATF2	Listeria_phage	8.6e-35	47.2
WP_062931923.1\|532526_534827_+	DNA primase	A8ATF3	Listeria_phage	2.1e-208	49.0
WP_062931924.1\|535123_535336_+	hypothetical protein	NA	NA	NA	NA
WP_062931925.1\|535335_535647_+	VRR-NUC domain-containing protein	A0A2H4JHE0	uncultured_Caudovirales_phage	1.5e-50	97.1
WP_011276630.1\|535649_535844_+	hypothetical protein	A0A1W6JNG1	Staphylococcus_phage	4.2e-30	96.9
WP_145912170.1\|535987_536218_+	hypothetical protein	A0A1W6JQG7	Staphylococcus_phage	5.5e-21	100.0
WP_053038609.1\|536456_536690_+	DUF3310 domain-containing protein	A0A1W6JQJ4	Staphylococcus_phage	2.0e-34	94.7
WP_053038570.1\|536691_536937_+	hypothetical protein	NA	NA	NA	NA
WP_062931927.1\|536939_537404_+	nucleoside 2-deoxyribosyltransferase	A0A1W6JQI2	Staphylococcus_phage	1.5e-81	95.5
WP_062931928.1\|537400_537586_+	hypothetical protein	A0A1W6JQJ2	Staphylococcus_phage	3.9e-25	95.1
WP_062932015.1\|537582_537972_+	hypothetical protein	A0A0D4DCF5	Staphylococcus_phage	1.6e-25	53.8
WP_062931929.1\|537972_538239_+	hypothetical protein	A0A0D4DCJ8	Staphylococcus_phage	7.0e-36	91.5
WP_062931930.1\|538228_538465_+	hypothetical protein	A1BUA9	Staphylococcus_virus	1.7e-09	50.0
WP_062931931.1\|538465_538888_+	dUTP diphosphatase	A0A1W6JQI5	Staphylococcus_phage	1.7e-68	95.7
WP_062931932.1\|539193_539502_+	hypothetical protein	A0A1W6JNJ2	Staphylococcus_phage	1.4e-51	98.0
WP_062931933.1\|539508_539727_+	hypothetical protein	A0A1W6JNG6	Staphylococcus_phage	5.9e-33	98.6
WP_062931934.1\|539723_539927_+	DUF1381 domain-containing protein	H9A0T7	Staphylococcus_phage	7.2e-25	86.6
WP_053017332.1\|539939_540218_+	hypothetical protein	H9A0M2	Staphylococcus_phage	4.3e-44	97.8
WP_062931935.1\|540210_540369_+	transcriptional regulator	A0A0D4DCF9	Staphylococcus_phage	2.1e-19	90.4
WP_053020754.1\|540370_540559_+	DUF1514 family protein	A0A0D4DCK3	Staphylococcus_phage	3.7e-23	98.4
WP_062931936.1\|540572_541019_+	transcriptional regulator	A0A0D4DCX6	Staphylococcus_phage	6.6e-79	99.3
WP_048668111.1\|541206_541554_+	HNH endonuclease	A0A0D4DD69	Staphylococcus_phage	1.7e-61	100.0
WP_062931937.1\|541689_542160_+\|terminase	phage terminase small subunit P27 family	A0A1W6JPP8	Staphylococcus_phage	8.8e-82	94.2
WP_062931938.1\|542152_543904_+\|terminase	terminase large subunit	A0A0D4DCY2	Staphylococcus_phage	0.0e+00	97.6
WP_158511272.1\|543917_544094_+	hypothetical protein	A0A0D4DBX4	Staphylococcus_phage	3.4e-23	98.3
WP_062932016.1\|544162_545341_+\|portal	phage portal protein	A0A0D4DC70	Staphylococcus_phage	3.7e-222	99.7
WP_034172773.1\|545312_545882_+\|head,protease	HK97 family phage prohead protease	A0A0D4DCC0	Staphylococcus_phage	1.2e-101	99.5
WP_062931939.1\|545931_547233_+\|capsid	phage major capsid protein	A0A0D4DCP3	Staphylococcus_phage	8.1e-210	99.1
WP_048668117.1\|547432_547756_+\|head,tail	phage gp6-like head-tail connector protein	A0A0D4DBY0	Staphylococcus_phage	1.7e-52	98.1
WP_034172776.1\|547725_548049_+\|head	phage head closure protein	A0A0D4DC77	Staphylococcus_phage	1.4e-54	100.0
WP_048668119.1\|548048_548474_+	hypothetical protein	A0A0D4DCC4	Staphylococcus_phage	5.7e-72	95.7
WP_048668120.1\|548463_548862_+	hypothetical protein	A0A0D4DCP8	Staphylococcus_phage	1.5e-66	94.6
WP_048668121.1\|548868_549459_+	hypothetical protein	A0A0D4DCZ2	Staphylococcus_phage	2.1e-104	95.4
WP_048668122.1\|549530_550064_+	hypothetical protein	A0A1W6JPW8	Staphylococcus_phage	5.0e-73	83.5
WP_062931940.1\|550267_555724_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0D4DC81	Staphylococcus_phage	0.0e+00	79.3
WP_158511273.1\|555788_556556_+\|tail	phage tail family protein	A0A2H4J5C4	uncultured_Caudovirales_phage	2.9e-66	49.4
WP_053090813.1\|556570_558838_+	SGNH/GDSL hydrolase family protein	Q4ZC48	Staphylococcus_virus	2.8e-189	53.8
WP_062931942.1\|558869_560879_+\|tail	phage tail protein	A0A2H4JAC2	uncultured_Caudovirales_phage	2.3e-147	57.9
WP_062931943.1\|560889_561117_+	hypothetical protein	NA	NA	NA	NA
WP_037557869.1\|561118_561307_+	hypothetical protein	NA	NA	NA	NA
WP_011276034.1\|561310_561730_+	hypothetical protein	A0A2H4JIB4	uncultured_Caudovirales_phage	1.0e-52	65.5
WP_011276033.1\|561713_562112_+	hypothetical protein	A0A2H4JAU6	uncultured_Caudovirales_phage	2.6e-34	57.6
WP_049426300.1\|562160_562460_+	hypothetical protein	A0A0D4DCQ8	Staphylococcus_phage	1.3e-43	99.0
WP_062931944.1\|562459_564172_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4J5A3	uncultured_Caudovirales_phage	0.0e+00	94.6

DBSCAN-SWA_6

732602 : 741072

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011276166.1\|732602_733085_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	46.0
WP_029376687.1\|733071_734196_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_011276164.1\|734199_734904_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.6e-47	42.9
WP_011276163.1\|734903_735164_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_011276162.1\|735165_735837_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_011276161.1\|735829_738019_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.1e-137	39.4
WP_011276160.1\|737997_739482_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.7e-47	33.6
WP_011276159.1\|739474_740506_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.7e-69	45.5
WP_011276158.1\|740505_741072_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.7e-29	40.3

DBSCAN-SWA_7

1155897 : 1165752

Bacillus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016931095.1\|1155897_1157277_-	ATP-dependent DNA helicase RecQ	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	3.8e-56	33.5
WP_037558731.1\|1157269_1158223_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002449743.1\|1158332_1158581_+	ferredoxin	A0A127AYY7	Bacillus_phage	5.8e-16	49.3
WP_016931096.1\|1158652_1159195_-	ECF transporter S component	NA	NA	NA	NA
WP_037558727.1\|1159534_1161292_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	2.8e-24	32.3
WP_011275720.1\|1161272_1161998_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.1e-46	41.3
WP_011275719.1\|1162149_1162887_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_011275718.1\|1162883_1163423_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.2e-10	31.2
WP_011275717.1\|1163415_1164147_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.2e-08	24.4
WP_037558725.1\|1164240_1164762_+	DUF309 domain-containing protein	NA	NA	NA	NA
WP_037558723.1\|1164864_1165752_-	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	2.8e-36	30.7

DBSCAN-SWA_8

1177242 : 1222471

Staphylococcus_phage(21.05%)

head,capsid,portal,protease,terminase,transposase,integrase,tail

attL 1169844:1169860|attR 1226943:1226959

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1169844:1169860	attL	NA	NA	NA	NA
WP_011275929.1\|1177242_1178559_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	1.6e-43	33.3
WP_011275702.1\|1178722_1180129_-	NADP-dependent phosphogluconate dehydrogenase	A0A222YX62	Synechococcus_phage	1.4e-29	31.9
WP_011275701.1\|1180202_1181330_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_011275700.1\|1181488_1181584_+	stressosome-associated protein Prli42	NA	NA	NA	NA
WP_011275698.1\|1182512_1183490_-	aromatic acid exporter family protein	NA	NA	NA	NA
WP_011275697.1\|1183502_1183940_-	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA
WP_011275696.1\|1184042_1185371_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_011275695.1\|1185383_1186367_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_011275694.1\|1186359_1187361_-	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA
WP_011275693.1\|1187378_1188803_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	3.1e-45	30.4
WP_011275692.1\|1188979_1190665_-	DNA repair protein RecN	NA	NA	NA	NA
WP_011275691.1\|1190680_1191133_-	transcriptional regulator ArgR	NA	NA	NA	NA
WP_011275690.1\|1191425_1192307_-	polyprenyl synthetase family protein	A0A1V0SE37	Indivirus	2.9e-09	27.8
WP_011275689.1\|1192284_1192515_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_037558207.1\|1192507_1193845_-	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	7.4e-41	34.7
WP_011275687.1\|1193863_1194250_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_011275686.1\|1194281_1194641_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_011275685.1\|1194654_1196010_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_011275684.1\|1196009_1196495_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_011275683.1\|1196711_1197269_-	elongation factor P	NA	NA	NA	NA
WP_011275682.1\|1197296_1198355_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_011275681.1\|1198458_1199040_+	hypothetical protein	NA	NA	NA	NA
WP_011275680.1\|1199054_1199270_+	hypothetical protein	NA	NA	NA	NA
WP_011275679.1\|1199313_1200144_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_011275678.1\|1200295_1200682_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_037536554.1\|1200857_1202336_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPB	E3ST28	Prochlorococcus_phage	1.1e-80	41.1
WP_037558205.1\|1202322_1203675_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	E3SN07	Prochlorococcus_phage	5.1e-66	39.0
WP_011275675.1\|1203691_1204783_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_037558203.1\|1204971_1205490_-	shikimate kinase	NA	NA	NA	NA
WP_037558199.1\|1206058_1206358_-	hypothetical protein	NA	NA	NA	NA
WP_123955564.1\|1206338_1206707_-	hypothetical protein	NA	NA	NA	NA
WP_037558197.1\|1206771_1207092_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_037558195.1\|1207105_1208170_-	type II secretion system F family protein	NA	NA	NA	NA
WP_062931962.1\|1209002_1209500_+	hypothetical protein	NA	NA	NA	NA
WP_053017508.1\|1209833_1210145_-\|head	phage head closure protein	NA	NA	NA	NA
WP_053017510.1\|1210156_1211800_-\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	9.7e-152	49.3
WP_053017512.1\|1211792_1212125_-	hypothetical protein	NA	NA	NA	NA
WP_053017514.1\|1212262_1212553_-	hypothetical protein	R9TNN2	Paenibacillus_phage	1.1e-18	44.9
WP_037558410.1\|1212545_1212827_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_062931963.1\|1212894_1214133_-\|capsid	phage major capsid protein	A0A0K2SUH4	Clostridium_phage	7.4e-19	27.1
WP_053017517.1\|1214134_1214701_-\|head,protease	HK97 family phage prohead protease	Q9AZY6	Lactococcus_phage	1.2e-13	31.7
WP_062931964.1\|1214687_1215866_-\|portal	phage portal protein	A0A1L2BY94	Clostridium_phage	2.4e-59	36.6
WP_062931965.1\|1216047_1216317_-	hypothetical protein	A0A1W6JQE4	Staphylococcus_phage	2.0e-22	55.2
WP_062931966.1\|1216712_1219046_-	DNA primase	A0A2H4JCU9	uncultured_Caudovirales_phage	4.3e-177	50.6
WP_062931967.1\|1219143_1219398_-	DUF1474 family protein	NA	NA	NA	NA
WP_062931968.1\|1219397_1219814_-	hypothetical protein	A0A2H4JBF1	uncultured_Caudovirales_phage	1.2e-53	80.9
WP_062931969.1\|1219953_1220274_-	helix-turn-helix domain-containing protein	A0A1W6JQE0	Staphylococcus_phage	5.3e-46	89.4
WP_062931970.1\|1220277_1220490_-	helix-turn-helix transcriptional regulator	A0A1W6JQE8	Staphylococcus_phage	2.9e-16	60.9
WP_062931971.1\|1220661_1221285_+	helix-turn-helix transcriptional regulator	A0A1W6JQE6	Staphylococcus_phage	2.2e-64	61.3
WP_062931972.1\|1221295_1222471_+\|integrase	site-specific integrase	A0A2H4JBC4	uncultured_Caudovirales_phage	3.7e-185	82.4
1226943:1226959	attR	NA	NA	NA	NA

DBSCAN-SWA_9

1449329 : 1475646

Staphylococcus_phage(91.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011275462.1\|1449329_1450289_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	1.0e-68	85.4
WP_011275461.1\|1450285_1450846_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	3.3e-75	72.4
WP_053038666.1\|1450985_1451387_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_011275459.1\|1451855_1452683_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_011275458.1\|1452908_1453910_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.5e-134	71.2
WP_011275457.1\|1453961_1454420_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	7.8e-59	85.3
WP_011275456.1\|1454431_1455613_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	4.7e-172	73.5
WP_011275455.1\|1455628_1456261_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.5e-79	68.1
WP_011275454.1\|1456267_1457311_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	6.2e-128	62.4
WP_016931324.1\|1457745_1459236_-	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	9.8e-18	80.7
WP_011275452.1\|1459544_1460861_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	1.2e-43	32.0
WP_011275451.1\|1461067_1461919_-	N-acetylglucosaminidase	A0A1J0MFB0	Staphylococcus_phage	1.0e-35	36.9
WP_011275450.1\|1462126_1462348_-	hypothetical protein	NA	NA	NA	NA
WP_011275449.1\|1462604_1463081_+	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	3.6e-30	47.4
WP_011275448.1\|1463082_1463529_+	competence protein ComK	NA	NA	NA	NA
WP_011275447.1\|1463512_1463983_-	membrane protein	A0A2H4PQT8	Staphylococcus_phage	1.7e-16	41.2
WP_011275446.1\|1464203_1464917_-	transaldolase	M1PR54	Cyanophage	5.0e-20	35.0
WP_011275445.1\|1465180_1465486_+	hypothetical protein	NA	NA	NA	NA
WP_011275444.1\|1465578_1465944_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	6.9e-34	59.3
WP_011275443.1\|1465940_1466294_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	5.0e-05	30.8
WP_011275442.1\|1466358_1467195_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	6.3e-123	74.7
WP_016931383.1\|1467473_1468382_-	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	1.3e-108	80.2
WP_011275440.1\|1468475_1469672_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-197	87.4
WP_053038719.1\|1470062_1471655_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	2.0e-274	86.4
WP_016931381.1\|1471718_1472489_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	6.7e-95	67.5
WP_016931380.1\|1472469_1472943_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	5.4e-47	57.1
WP_016931379.1\|1473009_1473246_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	2.4e-32	74.7
WP_016931378.1\|1473242_1474250_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	8.4e-98	52.6
WP_016931377.1\|1474251_1475646_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	7.9e-171	61.6

DBSCAN-SWA_10

2486817 : 2495018

Staphylococcus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062932013.1\|2486817_2488110_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	4.7e-186	80.5
WP_015387314.1\|2488128_2488524_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	4.2e-61	83.2
WP_002487267.1\|2488729_2489212_-	YdhK family protein	NA	NA	NA	NA
WP_049395126.1\|2489231_2490665_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_053038638.1\|2490679_2492740_-	copper-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.6e-66	30.1
WP_011274435.1\|2492992_2493310_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	2.5e-32	64.4
WP_011274434.1\|2493309_2494599_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	5.6e-187	81.6
WP_011274433.1\|2494616_2495018_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	1.3e-57	82.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013911

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection