CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012019	Legionella pneumophila subsp. pneumophila strain Toronto-20052 chromosome, complete genome	1 crisprs	cas3,DEDDh,DinG,PD-DExK,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,csa3	0	13	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012019_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012019_1

2540371-2543282

TypeI

I-C

Consensus_repeat	Method
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CRISPRCasFinder
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CRT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	PILER-CR

43 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP012019_1

>merge|NZ_CP012019|1|2540371-2543282|CRISPRCasFinder,CRT,PILER-CR
GATTCAATCCGCACGCCCGCACGGGGCGCGACCGTCTACTTTTCTATTTGACACAATTGCTATTCCTGTTTCAATCCACGCGCCCGCACGGGGCGCGACCCTATTGGCATTGACGACCTAATCACCAAACTCAAAGTTTCAATCCACGCGCCCGCACGGGGCGCGACGAATGATGATGTGCAAGCTATTTTACCTTGGGATGTTTCAATCCACGCGCCCGCACGGGGCGCGACCTATATTGAAATATTTTTCTTCTTTTTCTATACCTATGTTTCAATCCACGCGCCCGCACGGGGCGCGACAGTTAAATACAAACGCGTAAAATCTAAGTTATCTGTTTCAATCCACGCGCCCGCACGGGGCGCGACATGAAAACTCTAGTTTTTAATGTCTTAGACGACGGTTTCAATCCACGCGCCCGCACGGGGCGCGACATTTTTACATTCATTCTATAAGTTTGCGAAATATGTTTCAATCCACGCGCCCGCACGGGGCGCGACGACAGCATTGCGTCAAGAGTTTATTGCTTTAGATAAGTTTCAATCCACGCGCCCGCACGGGGCGCGACTTCTTCAATAGTCATTACTTTACCTCTCTTTAGATGTTTCAATCCACGCGCCCGCACGGGGCGCGACTCCAAGGCTTCTTTTTGTAACCCTTGTTTTTGCTTGTTTCAATCCACGCGCCCGCACGGGGCGCGACAACAACCCAATCATTATTTTCTGAGCCTATAAAATGTTTCAATCCACGCGCCCGCACGGGGCGCGACATGCCCTATCACAAGAGCTATTTCATCATCATTTTCCGTTTCAATCCACGCGCCCGCACGGGGCGCGACCTAAGACAACTATTCTTAATTCACATAGAGACACAAGTTTCAATCCACGCGCCCGCACGGGGCGCGACAAATTATTAGCAATTCCCTGATCCAACTAGGCCATGTTTCAATCCACGCGCCCGCACGGGGCGCGACGTAAATCATATATAAATAGTGGTGAGTGGTGTGAGTTTCAATCCACGCGCCCGCACGGGGCGCGACACCATACACTAAGAATAGACGTTACTGATAAACTAGTTTCAATCCACGCGCCCGCACGGGGCGCGACAGGACCTATAGCCACACCTTGGGCGGGCCATAAAGTTTCAATCCACGCGCCCGCACGGGGCGCGACCAATAAATCTAGTCCTATCCCTAACTAATTGTAATTGTTTCAATCCACGCGCCCGCACGGGGCGCGACCCCCTATGACATAAATGTACCTGAGATTTACGAAGTTTCAATCCACGCGCCCGCACGGGGCGCGACAACGACAGCGAAACATGTTGATCAGCCATACAAAGGTTTCAATCCACGCGCCCGCACGGGGCGCGACGCATCAGGACGGGCTTTAAATAACAATCCAGTTTCGTTTCAATCCACGCGCCCGCACGGGGCGCGACCACCTGTAAACAATCCTTTCAAACTTCCTAAAACAAGTTTCAATCCACGCGCCCGCACGGGGCGCGACACTACAATATAAATCACATTTACTATTTTCTTGAGTTTCAATCCACGCGCCCGCACGGGGCGCGACACCATGAAAGCATTGAAGTAACCGCTTGCTGCAATCGGTTTCAATCCACGCGCCCGCACGGGGCGCGACCTGTCCCTTTAACTGCTGCCAACATCATTGCCATGTTTCAATCCACGCGCCCGCACGGGGCGCGACTCTATATGCGTACATGTTGCCCTTACTGTGGCATTGTTTCAATCCACGCGCCCGCACGGGGCGCGACTCGACTTGGCCTTATCCAAAGCTAGATTTATAATTGTTTCAATCCACGCGCCCGCACGGGGCGCGACACTAAACACGAAAAATGGGCAATCGAATTAAGAAGTTTCAATCCACGCGCCCGCACGGGGCGCGACTCGCTAAAAGCCCCTGCCAAGATTATTAATGTATTAGTTTCAATCCACGCGCCCGCACGGGGCGCGACCCATTTTATAGCAGTAAGTGATACCAAGTATCCGGTTTCAATCCACGCGCCCGCACGGGGCGCGACGTTGGTTTCCCTCACAGACAAATATCATTATACATGTTTCAATCCACGCGCCCGCACGGGGCGCGACACCATACACTAAGAATAGACGTTACTGATAAACTAGTTTCAATCCACGCGCCCGCACGGGGCGCGACAGTAAAGTTTGGTTTACGTTGTGAGATTATTATGTTTCAATCCACGCGCCCGCACGGGGCGCGACATGCATTGGTTCTATACGAATTTCATGGAGTACGCTGTTTCAATCCACGCGCCCGCACGGGGCGCGACGTAAGTGCTATAGCAATGTGGTTTGACAAGAACATGTTTCAATCCACGCGCCCGCACGGGGCGCGACCTGTCCCTTTAACTGCTGCCAACATCATTGCGATGTTTCAATCCACGCGCCCGCACGGGGCGCGACAGCATCGTTGATTACATTAATAGCAATGGCACATGGGTTTCAATCCACGCGCCCGCACGGGGCGCGACACCTTTGCCAAGAGCAACGTTCACCATGAAAGCATTGTTTCAATCCACGCGCCCGCACGGGGCGCGACCCTGTGATCCCGGTTACGGCTGTGCCGTTAAAAGTGTTTCAATCCACGCGCCCGCACGGGGCGCGACCTGTTGTTTTTTGACATAGAAACCAGTTTAATTGTTTCAATCCACGCGCCCGCACGGGGCGCGACGAAACAGATGATCAGGTGATTAAAAACGATTTAAAGTTTCAATCCACGCGCCCGCACGGGGCGCGACACCCGGACTGGGTTAAAGCCTATCACCGCGAGATGGTTTCAATCCACGCGCCCGCACGGGGCGCGACCGGAAAGATGAAACCTAGCCAACCTATAGACTTAAGTTTCAATCCACGCGCCCGCACGGGGCGCGAC

>NZ_CP012019|1|1|2540371-2543282|CRISPRCasFinder
GATTCAATCCGCACGCCCGCACGGGGCGCGAC	CGTCTACTTTTCTATTTGACACAATTGCTATTCCT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CCTATTGGCATTGACGACCTAATCACCAAACTCAAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GAATGATGATGTGCAAGCTATTTTACCTTGGGAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTATATTGAAATATTTTTCTTCTTTTTCTATACCTAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AGTTAAATACAAACGCGTAAAATCTAAGTTATCT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ATGAAAACTCTAGTTTTTAATGTCTTAGACGACG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ATTTTTACATTCATTCTATAAGTTTGCGAAATAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GACAGCATTGCGTCAAGAGTTTATTGCTTTAGATAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TTCTTCAATAGTCATTACTTTACCTCTCTTTAGAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TCCAAGGCTTCTTTTTGTAACCCTTGTTTTTGCTT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AACAACCCAATCATTATTTTCTGAGCCTATAAAAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ATGCCCTATCACAAGAGCTATTTCATCATCATTTTCC
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTAAGACAACTATTCTTAATTCACATAGAGACACAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AAATTATTAGCAATTCCCTGATCCAACTAGGCCAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GTAAATCATATATAAATAGTGGTGAGTGGTGTGA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCATACACTAAGAATAGACGTTACTGATAAACTA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AGGACCTATAGCCACACCTTGGGCGGGCCATAAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CAATAAATCTAGTCCTATCCCTAACTAATTGTAATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CCCCTATGACATAAATGTACCTGAGATTTACGAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AACGACAGCGAAACATGTTGATCAGCCATACAAAG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GCATCAGGACGGGCTTTAAATAACAATCCAGTTTC
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CACCTGTAAACAATCCTTTCAAACTTCCTAAAACAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACTACAATATAAATCACATTTACTATTTTCTTGA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCATGAAAGCATTGAAGTAACCGCTTGCTGCAATCG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTGTCCCTTTAACTGCTGCCAACATCATTGCCAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TCTATATGCGTACATGTTGCCCTTACTGTGGCATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TCGACTTGGCCTTATCCAAAGCTAGATTTATAATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACTAAACACGAAAAATGGGCAATCGAATTAAGAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TCGCTAAAAGCCCCTGCCAAGATTATTAATGTATTA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CCATTTTATAGCAGTAAGTGATACCAAGTATCCG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GTTGGTTTCCCTCACAGACAAATATCATTATACAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCATACACTAAGAATAGACGTTACTGATAAACTA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AGTAAAGTTTGGTTTACGTTGTGAGATTATTAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ATGCATTGGTTCTATACGAATTTCATGGAGTACGCT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GTAAGTGCTATAGCAATGTGGTTTGACAAGAACAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTGTCCCTTTAACTGCTGCCAACATCATTGCGAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AGCATCGTTGATTACATTAATAGCAATGGCACATGG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCTTTGCCAAGAGCAACGTTCACCATGAAAGCATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CCTGTGATCCCGGTTACGGCTGTGCCGTTAAAAGT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTGTTGTTTTTTGACATAGAAACCAGTTTAATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GAAACAGATGATCAGGTGATTAAAAACGATTTAAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCCGGACTGGGTTAAAGCCTATCACCGCGAGATG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CGGAAAGATGAAACCTAGCCAACCTATAGACTTAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC

>NZ_CP012019|1|1|2540371-2543282|CRT
GATTCAATCCGCACGCCCGCACGGGGCGCGAC	CGTCTACTTTTCTATTTGACACAATTGCTATTCCT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CCTATTGGCATTGACGACCTAATCACCAAACTCAAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GAATGATGATGTGCAAGCTATTTTACCTTGGGAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTATATTGAAATATTTTTCTTCTTTTTCTATACCTAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AGTTAAATACAAACGCGTAAAATCTAAGTTATCT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ATGAAAACTCTAGTTTTTAATGTCTTAGACGACG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ATTTTTACATTCATTCTATAAGTTTGCGAAATAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GACAGCATTGCGTCAAGAGTTTATTGCTTTAGATAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TTCTTCAATAGTCATTACTTTACCTCTCTTTAGAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TCCAAGGCTTCTTTTTGTAACCCTTGTTTTTGCTT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AACAACCCAATCATTATTTTCTGAGCCTATAAAAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ATGCCCTATCACAAGAGCTATTTCATCATCATTTTCC
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTAAGACAACTATTCTTAATTCACATAGAGACACAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AAATTATTAGCAATTCCCTGATCCAACTAGGCCAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GTAAATCATATATAAATAGTGGTGAGTGGTGTGA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCATACACTAAGAATAGACGTTACTGATAAACTA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AGGACCTATAGCCACACCTTGGGCGGGCCATAAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CAATAAATCTAGTCCTATCCCTAACTAATTGTAATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CCCCTATGACATAAATGTACCTGAGATTTACGAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AACGACAGCGAAACATGTTGATCAGCCATACAAAG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GCATCAGGACGGGCTTTAAATAACAATCCAGTTTC
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CACCTGTAAACAATCCTTTCAAACTTCCTAAAACAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACTACAATATAAATCACATTTACTATTTTCTTGA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCATGAAAGCATTGAAGTAACCGCTTGCTGCAATCG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTGTCCCTTTAACTGCTGCCAACATCATTGCCAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TCTATATGCGTACATGTTGCCCTTACTGTGGCATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TCGACTTGGCCTTATCCAAAGCTAGATTTATAATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACTAAACACGAAAAATGGGCAATCGAATTAAGAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TCGCTAAAAGCCCCTGCCAAGATTATTAATGTATTA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CCATTTTATAGCAGTAAGTGATACCAAGTATCCG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GTTGGTTTCCCTCACAGACAAATATCATTATACAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCATACACTAAGAATAGACGTTACTGATAAACTA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AGTAAAGTTTGGTTTACGTTGTGAGATTATTAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ATGCATTGGTTCTATACGAATTTCATGGAGTACGCT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GTAAGTGCTATAGCAATGTGGTTTGACAAGAACAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTGTCCCTTTAACTGCTGCCAACATCATTGCGAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AGCATCGTTGATTACATTAATAGCAATGGCACATGG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCTTTGCCAAGAGCAACGTTCACCATGAAAGCATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CCTGTGATCCCGGTTACGGCTGTGCCGTTAAAAGT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTGTTGTTTTTTGACATAGAAACCAGTTTAATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GAAACAGATGATCAGGTGATTAAAAACGATTTAAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCCGGACTGGGTTAAAGCCTATCACCGCGAGATG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CGGAAAGATGAAACCTAGCCAACCTATAGACTTAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC

>NZ_CP012019|1|1|2540438-2543282|PILER-CR
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CCTATTGGCATTGACGACCTAATCACCAAACTCAAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GAATGATGATGTGCAAGCTATTTTACCTTGGGAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTATATTGAAATATTTTTCTTCTTTTTCTATACCTAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AGTTAAATACAAACGCGTAAAATCTAAGTTATCT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ATGAAAACTCTAGTTTTTAATGTCTTAGACGACG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ATTTTTACATTCATTCTATAAGTTTGCGAAATAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GACAGCATTGCGTCAAGAGTTTATTGCTTTAGATAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TTCTTCAATAGTCATTACTTTACCTCTCTTTAGAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TCCAAGGCTTCTTTTTGTAACCCTTGTTTTTGCTT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AACAACCCAATCATTATTTTCTGAGCCTATAAAAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ATGCCCTATCACAAGAGCTATTTCATCATCATTTTCC
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTAAGACAACTATTCTTAATTCACATAGAGACACAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AAATTATTAGCAATTCCCTGATCCAACTAGGCCAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GTAAATCATATATAAATAGTGGTGAGTGGTGTGA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCATACACTAAGAATAGACGTTACTGATAAACTA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AGGACCTATAGCCACACCTTGGGCGGGCCATAAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CAATAAATCTAGTCCTATCCCTAACTAATTGTAATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CCCCTATGACATAAATGTACCTGAGATTTACGAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AACGACAGCGAAACATGTTGATCAGCCATACAAAG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GCATCAGGACGGGCTTTAAATAACAATCCAGTTTC
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CACCTGTAAACAATCCTTTCAAACTTCCTAAAACAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACTACAATATAAATCACATTTACTATTTTCTTGA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCATGAAAGCATTGAAGTAACCGCTTGCTGCAATCG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTGTCCCTTTAACTGCTGCCAACATCATTGCCAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TCTATATGCGTACATGTTGCCCTTACTGTGGCATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TCGACTTGGCCTTATCCAAAGCTAGATTTATAATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACTAAACACGAAAAATGGGCAATCGAATTAAGAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	TCGCTAAAAGCCCCTGCCAAGATTATTAATGTATTA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CCATTTTATAGCAGTAAGTGATACCAAGTATCCG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GTTGGTTTCCCTCACAGACAAATATCATTATACAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCATACACTAAGAATAGACGTTACTGATAAACTA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AGTAAAGTTTGGTTTACGTTGTGAGATTATTAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ATGCATTGGTTCTATACGAATTTCATGGAGTACGCT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GTAAGTGCTATAGCAATGTGGTTTGACAAGAACAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTGTCCCTTTAACTGCTGCCAACATCATTGCGAT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	AGCATCGTTGATTACATTAATAGCAATGGCACATGG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCTTTGCCAAGAGCAACGTTCACCATGAAAGCATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CCTGTGATCCCGGTTACGGCTGTGCCGTTAAAAGT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CTGTTGTTTTTTGACATAGAAACCAGTTTAATT
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	GAAACAGATGATCAGGTGATTAAAAACGATTTAAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	ACCCGGACTGGGTTAAAGCCTATCACCGCGAGATG
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC	CGGAAAGATGAAACCTAGCCAACCTATAGACTTAA
GTTTCAATCCACGCGCCCGCACGGGGCGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012019.1\|WP_027225850.1\|2533066_2534290_-\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP012019.1\|WP_027225856.1\|2543753_2544770_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP012019.1\|WP_011216134.1\|2530520_2530754_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|376348
NZ_CP012019.1\|WP_061784392.1\|2548015_2548651_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP012019.1\|WP_027225847.1\|2529151_2530531_+\|acyl--CoA-ligase	unknown	unknown	gnl\|CDD\|223395
NZ_CP012019.1\|WP_027225852.1\|2538331_2540164_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP012019.1\|WP_027225857.1\|2544766_2545384_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP012019.1\|WP_010947947.1\|2551273_2551660_-\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|226211
NZ_CP012019.1\|WP_027225855.1\|2543457_2543751_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP012019.1\|WP_021436960.1\|2527401_2529147_+\|fatty-acyl-AMP-ligase	unknown	unknown	gnl\|CDD\|341254
NZ_CP012019.1\|WP_061784393.1\|2551870_2555728_+\|lpg2239-family-Dot/Icm-T4SS-effector	unknown	unknown	unknown
NZ_CP012019.1\|WP_021436962.1\|2534443_2535646_+\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP012019.1\|WP_027225858.1\|2545385_2546297_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP012019.1\|WP_061636642.1\|2531499_2532510_+\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|238426
NZ_CP012019.1\|WP_011216137.1\|2532829_2533057_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP012019.1\|WP_061784391.1\|2535798_2538141_+\|cbb3-type-cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|225795
NZ_CP012019.1\|WP_027268492.1\|2546300_2548019_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP012019.1\|WP_027225848.1\|2530750_2531503_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP012019.1\|WP_061721285.1\|2548664_2550875_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP012019.1\|WP_015961369.1\|2555964_2557173_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669

Protein	Function_ID	Function_description	E-value
NZ_CP012019.1\|WP_027225850.1\|2533066_2534290_-\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.29936e-88
NZ_CP012019.1\|WP_027225856.1\|2543753_2544770_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP012019.1\|WP_011216134.1\|2530520_2530754_+\|acyl-carrier-protein	gnl\|CDD\|376348	pfam00550, PP-binding, Phosphopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of the anguibactin system regulator AngR has the attachment serine replaced by an alanine.	0.00271462
NZ_CP012019.1\|WP_061784392.1\|2548015_2548651_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.58449e-95
NZ_CP012019.1\|WP_027225847.1\|2529151_2530531_+\|acyl--CoA-ligase	gnl\|CDD\|223395	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	3.01367e-61
NZ_CP012019.1\|WP_027225852.1\|2538331_2540164_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.70525e-141
NZ_CP012019.1\|WP_027225857.1\|2544766_2545384_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	4.58313e-34
NZ_CP012019.1\|WP_010947947.1\|2551273_2551660_-\|MAPEG-family-protein	gnl\|CDD\|226211	COG3686, COG3686, Predicted membrane protein [Function unknown].	1.23593e-22
NZ_CP012019.1\|WP_027225855.1\|2543457_2543751_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.62808e-28
NZ_CP012019.1\|WP_021436960.1\|2527401_2529147_+\|fatty-acyl-AMP-ligase	gnl\|CDD\|341254	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin.	0
NZ_CP012019.1\|WP_021436962.1\|2534443_2535646_+\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	1.47944e-32
NZ_CP012019.1\|WP_027225858.1\|2545385_2546297_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.55067e-146
NZ_CP012019.1\|WP_061636642.1\|2531499_2532510_+\|ketoacyl-ACP-synthase-III	gnl\|CDD\|238426	cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.	6.23498e-93
NZ_CP012019.1\|WP_011216137.1\|2532829_2533057_-\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	9.14848e-08
NZ_CP012019.1\|WP_061784391.1\|2535798_2538141_+\|cbb3-type-cytochrome-c-oxidase-subunit-I	gnl\|CDD\|225795	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism].	1.58323e-143
NZ_CP012019.1\|WP_027268492.1\|2546300_2548019_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NZ_CP012019.1\|WP_027225848.1\|2530750_2531503_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.63789e-42
NZ_CP012019.1\|WP_061721285.1\|2548664_2550875_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.44617e-55
NZ_CP012019.1\|WP_015961369.1\|2555964_2557173_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.56806e-05

>NZ_CP012019.1|WP_027225852.1|2538331_2540164_-|ABC-transporter-ATP-binding-protein
MSDLQQLPKTILRFSWHFIKKSPWLYALFFIAPVVMVLETNVIPYALKMIIDGITNHKGGKESIFQDIAPALYLGGVAWFGVILVLRLHNWWQAYLVPQFQANIRMTLFGYLIQHSHHFFSNQLAGNLANKISDIPRSLEAIRKIVSCNVNTTFAAIVVSIVLMLTINPWFAFILLSWIIIQLFISFYSAKEINKLARVNAEDKSILKGKIVDSLNNINTVKLFVQNEYEKKYVWKTQDKEVQSNKRLVLFINFFRLLVDVPVSIMLIAMIYSVISFWQRNLISTGDVVFIFATSFAIMNQMWSLSNSLCDLFVEIGIVKQALAILSQPIEVQDIASAKELKVTHGEIRFENVTFRHRDGQELFTNKSLVIPAKQKVGLVGYSGGGKTTFINLILRYFDVDSGRILIDNQDISEITQYSLRKSISMIPQDTNLFHRTLLENIQYGKEDADRDEVVTAASLANCMDFIQNLPQGFNTIVGERGTKLSGGQRQRIAIARAFLHHTPILILDEATSQLDSLTEECIQESLQPLCEGKTTIVVAHRLSTLLNMDRILVFDKGTIVEDGTHQELIENNGLYKSMWDAQTSGFLPVEQEDEAELAKEFDRPYLAQV
>NZ_CP012019.1|WP_061784391.1|2535798_2538141_+|cbb3-type-cytochrome-c-oxidase-subunit-I
MHTIANETPVQKDHSFDPITNILKWVLLVTAILCFLILIWGTVKTYQLVPPLPDRFVTSTGETVMTSQDIVEGKAGFQRADLMDYGSLYGMGSYFGEDYTAKYLVRLGELVQEELAKIRFNKAYSELTESEQFVINKEMQNSLQRLDLNKKTSILTPAIATSIRQLQAEISQSLLNHNFMAGYTQAYSLNPDTALQTANFLIYSSLTTIARRPNQNISYTNNWPYEPSVGNTPSSGTFYWTWISFCFVFMGFGAVIYIYHRYLSDVDHGPMEPIFSGFKPLTQSQRKVGQYFLVAALFLLLQIAVGAIMAHYYAERESFYGINVNTWLPFNFLRDVHIQTPIIWIGLSWISAGIFMAPIISGKEAKGQGFLVDLLFYVTLLVVGGAILGNYLGIMGYIDKAWFWLGNQGLSYIQLGRLWQIGFCIGLFLWSFIVFRGMWPTWDGLKKATIEFWTGRIKLENLFWASTINVAVLYCFGMIPLTGIEKSFTITDFWRWWVVHLWVEQSFEFFAACATAYLLMGTGLVSRKAAERTVYFESILIFLGGVIGTGHHWYWTGTPEMWIPLGSMFSFIEVLPLVLLIIDAIEHRQLIKKQGTFTYNLAYLYILGAAFWNFVGAGVFGGGTLNAPLINYYEHGTFLTLNHAHTALFGAFGLLALGLIYFCLRYAAGEGKTWSDRLGVYAFWLYNAGLFLWIVLNFFPIGWSQLMAVYEHGLSYARSLEFYNTTLLWQWLRFPGDVVFALGALLMAYDFIVKIGPFFPKFARNRRFIAGPPKATDPSL
>NZ_CP012019.1|WP_021436962.1|2534443_2535646_+|sterol-desaturase-family-protein
MDINLMVFASPLFLILIGIETWVAYYKKSGVYQLNDSVNNFSSGILEEIGALPIKGLIIYSYYYLYEHYAIFNVNTQSIFSWLLLWIGVDFFYYWYHRVSHRNSFFWIGHSVHHQSEHFNLSVALRQGYFQTLTSWVFYLPLALIGFPTWMFVIVASVNTIYQFWIHTESIRKMGWFEKIFNTPSHHRVHHGKNPQYIDKNYAGSLIIWDKLFGTFEPEEAPADYGVTEPLDSWNPFYANIKVVKDILYYGKGLKSKWGVLRAFFMPPEWIIHRLQQENSPVSKKTVIKKNTTSPGIYMLTNTAFAVFLYTYLSLVFDPAMVTSWLMGALILLTLYTLGRIADGHSNTLYLEISRATLILLILLLFKNTLLLSLGCSVLFYVINYALCTTLPYKRTASSF
>NZ_CP012019.1|WP_027225850.1|2533066_2534290_-|multidrug-effflux-MFS-transporter
MHQEHPGQTDTPKIDPWLIFVILMLMALMQTTTDQYIPSLPAITTALNSTEASIQLTISMFMLGLSLSHIFYGPLSDKIGRKPPLMFGVGLSILGSLVCFFAPNVSVLILGRFLQGFGIGCCNSVGRSLVRDLFTDRLLAKIGSYVGVVSIFIMAASPTLGGFIQEIAGWKANFMFLFVFGILVWLLAFCILPETNKHLNPEATKIKVMAKNYFTLLRSKIFVGYTLCACFAFAGMVSYLTIAPFLFQNTMGLSPLEFGRLTFFIAGAICFSGIVNSQLVMRKGISFMVCTGVLFMIVGGLSLLLITILGWSQIYFIMISMTLFSAGAGFTFINAFAGAFHPFPQMAGTVGALYASMQDLSAALTSGFIAGIKGYGQYSLAMILLILGLSSLVAWYYLGLQDDAISN
>NZ_CP012019.1|WP_011216137.1|2532829_2533057_-|acyl-carrier-protein
MKITDEELKKIISKLSGSKADDIQDDTALIEDLHLDSLKIVELLAILSEEYQLEVSEEDAMNFHTYKDLYDFTQA
>NZ_CP012019.1|WP_061636642.1|2531499_2532510_+|ketoacyl-ACP-synthase-III
MNFFRCEKTIYIKGPFVALPERVMSNQDVLNWMNSTQNPAVIGFSTGIKNRHWVNEDQACSDLAVRAAEHLFMEKPREKHKVNQVILATISGDYPSPPSSPLVQYRLGLQNAGAFDIGAACAGFVVGLHTSAALAQTNDGSVLLIASEIRSKFLNKNNFATSVLFGDGAAACCVSQDKEEADFRFIASALFADGEVYDAVSTPAGGSRLPAAVCNDNEQFYITIKESTALFVKAVHGMADSAKDFLKELNLTISDIQWLVPHQGNKNLVLSVAKQLGFPEEKTIKTVEETGNTSGSSVGIALDRLRSDGKIKSGEKVLLVAAGGGGIAACSLLEVI
>NZ_CP012019.1|WP_027225848.1|2530750_2531503_+|SDR-family-oxidoreductase
MNILITGGSSDIAQAIAKRRSASGDKIIITCSNDDSLNETLAIYRQQNIDVTGFIYNFSDPQACENDLELILREPLDGIILNAFTRVTQLRKLHALPYHAVRTYLDNNLNGNIWLIHRLLPALLKNKFGRLVLISSLSATAGTSRYPVYCTAKAALEGLFLNLAVDYSANNILSNIVRVGLIKTSRTEQFWKNPAYQEKVIQIIPQGTMGEPTQVAEAIDPLLSKTSFMTGSVVTVSGGLPLMRSEGLLS
>NZ_CP012019.1|WP_011216134.1|2530520_2530754_+|acyl-carrier-protein
MLSNRIEQVLERIGLTNLPENKQAKLEQGGLDSLMLALLIIELEREFEIKIPVIPLEKEHYESINTIEQYLIELGAK
>NZ_CP012019.1|WP_027225847.1|2529151_2530531_+|acyl--CoA-ligase
MLFLASDVPNKVAITQDNRAITFDELTHEVLASSKQFLKLPKTIIVLHATPEIGFIIQLLACLETGRPIALFPNSISEEEKQRRLSLLGNAVMINEEGELQEICENKTIQPHPQTALILFTSGSTGSVKAVQLSSINIKANCHAVIKALEFKKIQDQLLFLPLSYSFGLLGQLLPGLMFGLTTRLITHFTDIKMLMEQSTVPQMWSGVPSHWVAINAIAKRYPDSAAKINAIVSAGAPLSTALRTDLKQIFPKAIIYNNYGLTEASPRVLTYSSKDPLFTENYAGYPVGDWKVKLSAEHELLINGTQMMLGYLGEKDSTKIQNGWLSTGDIAEILPNGLVAIKGRRDSLVNIGGEKVSLSEIEQKICQIDVIKEAIVIPQEDKIYGTRLIVCIEKKSLPSPISEQNLIEKIQTQLLPRKLPIQLQLMSSLPRNQHGKLDRKALVLNIDGLDNKEKNNAK
>NZ_CP012019.1|WP_021436960.1|2527401_2529147_+|fatty-acyl-AMP-ligase
MKKEYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQTEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALDSIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYRATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVRAETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSPYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQAVKIIDPDTLVPCDFDQVGEIWVQSNSVAKGYWNQPEETKHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLPIVATWQLNKIEE
>NZ_CP012019.1|WP_027225855.1|2543457_2543751_-|CRISPR-associated-endonuclease-Cas2
MFVVITYDVNVTTSGGQKRLRNIAKTCLDYGFRVQNSVFECEVEPDRFVALKNTLLELFDPDADSLRFYFLGKKGKDKIEHFGANKVIDPLRDPLIL
>NZ_CP012019.1|WP_027225856.1|2543753_2544770_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYVTRQETYLHKDRETIVIMLGKEKLGQFPALTIGNILCFGQVSVSPQLMGFCGERGIGLSFYSEYGKFFARVLGKQTGNVLLRRTQYRWADHQDKSLSIARIMVGAKIANCRSVLMREIRNHGENALLENSAEKLLRNLHRSRSALNIQELMGIEGDSAAVYFGVFSELIHGEKFTFSSRNRRPPTDPVNALLSFIYSLLTQECISALLGVGLDPYVGFLHRDRPGRASMALDLLEEFRAPLADRFILTLINRRQIQLSDFVTEASGAVRLTENARKSLLVSYQERKQMEVIHPYLKEQVTVGLLPHCQALLLARHLRGDTEFYTPYLVK
>NZ_CP012019.1|WP_027225857.1|2544766_2545384_-|CRISPR-associated-protein-Cas4
MTEDDYLLVSAIQHYAYCPRQCALIHIEQVWSENFWTAEGRALHARVDAGGSEQRGNLRSERGVMVISHRLCIRGKLDLLEVQGKSPVSYFPVEYKRGKPKLEIWDKAQLCAQVLCLEEMRNVQIKEAALWYWQIRHREIVPIDKQLREKTEEIIAAAHAMIESGITPRALFSKRCNACSLIDLCEPQCLQHDHSKIYVNSMYLL
>NZ_CP012019.1|WP_027225858.1|2545385_2546297_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MVIQNRYDLVFIFDVKDGNPNGDPDAGNLPRIDVETGCGLVTDVCLKRKIRNYVSLVKNPMELTQPLDKNQMRYEIYVREKAILNKQNERAYIGIGEEELLKVDNKKRKGGGKVEEARQWMCLNFYDVRTFGAVMSTGINAGQVRGPVQLTFARSVEPIVTSEHTITRMAVATEDEAENQEGDNRTMGRKFTIPYGLYRMHGFISAPLAEQTNFNEDDLELLFESFKNMFEHDRSAARGEMTARGLYVFKHESKLGNAQAHTLFERIKISRQTEGPARSFDDYKVEVDTSNFPQGVMLERIIG
>NZ_CP012019.1|WP_027268492.1|2546300_2548019_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQSLQVYYDRKSVDPESGIAPEGFERKEIPFIIVIDKQGNFVQIEDTRYQDGKHIRAKSFLVPQSEKRSSGVKACLLWDNAEYIFGLVRNQSKSIRIDQQRQDFFNRIRALNIEEDEGISAVLHFLSSDNLVCFLEQSNYSDEIKETNPFMSFRLNEDSHLVCERWRVVDKIKDMKTTGDIGICLVSGEKGELTRLQPPIKGVRGTNSTGGNLVSFNLSAFNSFGKIQGANAQISKKSSFAYTTALNHLLAKDSSQKIQVGDATTVFWADKDSHFEKYFLELFEEPPKDNPDHLSEKVAALLKAVDTGVLPESDHETKFFILGLSPNAARISVRFWHAGTIAEFSKRIAQHFHDLELIHALGKQNYMSIGALLRATALQGKSENIVPNLSGEWMRCILEGLPYPELLFQAVMRRIKAEREVSFARAAMIKAYLNRKARFLNKLEEEITVSLDDENKNLGYRLGRLFAVLEKIQEEANPRINAGIREKYYSSASCTPASVMPVLMRLKNHHLAKLTRGKGIYFERLLGEILCEIHSFPPQLNLTDQGRFAIGYYHQRQAFFTKSEISSAEG
>NZ_CP012019.1|WP_061784392.1|2548015_2548651_-|type-I-C-CRISPR-associated-protein-Cas5
MPNNYCLEVRSAFACFTRPEMKVERVSYDVITPSAARAIFEAIFWKPAISWRVTRIDVLNPIRWISIRRNEVGTVMSSRSNGIYIEDARQQRASLLLRDVRYRIYADLSFDQSKDVSSQYGKYTSMFERRAEKGQCFNQPYLGCREFSCDYRLVTNLLNEPSPIAEDRSLGWMLYDMDYHDPKNPTPRFFNAQLNAGVLQVPAWDSEEVKG
>NZ_CP012019.1|WP_061721285.1|2548664_2550875_-|CRISPR-associated-helicase/endonuclease-Cas3
MNTTEIAHVKKDKNGQWKLHLLDEHLRSVASLASKNAMIFGSSDWAFLAGLWHDLGKYRPAFQNYIKGMTGFDPEAHIEQGRVDHSTAGAIYACEQLGKVGRLLSYLIAGHHAGLPDWIGIDEESRSALEYRLNKGRSYLEEVLAQTIPKDILQHTKPKEKPLGGIDGLHLWIRMLFSCLVDADFLDTESFMSPEKTAQRSEWPDLHTLKSHFDNYMQAQILSKAEKTLVNEIRINILDMCREAASMAPGLFTLTVPTGGGKTLSSMAFALEHALKHHKRRVIVVIPYTSIIEQTADQYRKIFKDAVVEHHSNLDPEQETAKSRLASENWDAPIIVTTNVQLLESLFAARTSKCRKLHNLVNSVIVIDEVQLLPPEFLQPVLDVFRLLTAYYGVTLVLSTATQPALNTIKNAFGQILFRGLDGVREIIQDVPALYQKLSRIKIEKPANLNEQISWQNLAQEVCQHESALVIVNTRKDCRALFDLMPEGTIHLSGLMCGEHRSAVIQEIKRLLREGTSVRVVSTQLVEAGVDLDFPIVYRALSGLDSIAQAAGRCNREGKLKQGQVIVFVPPNPSPMGMLRQAEQATVSVWHGWDEDPLDHRLYQRYFEQYFNVDKDKKQICSLLTKDARQLCIQFRTAAEKFRIIEDAGLQILVPYNEKSEMLLRSLSQNGPERWLMRQLQRYTVTIYEEEFCKLRDVGAIEEIYPGIYALSSLNVYSPKTGLLSVIDIMSACNVF
>NZ_CP012019.1|WP_010947947.1|2551273_2551660_-|MAPEG-family-protein
MYTIIVCLFIAILLPYLAKVPVAYAMHKAGGYNNRYPREQQARLQGFGARALAAHQNAFESLLIFATASLTALATNSVTLMTQYFAIAYIISRLFYHLFYLLNWSSLRSTVWFLGVICCLSILWLSIP
>NZ_CP012019.1|WP_061784393.1|2551870_2555728_+|lpg2239-family-Dot/Icm-T4SS-effector
MKMNEYIELYERHRYEGNNTIDSLILTLNSLKQNRESWGQDNKLAKYLGFGLRNAKHPFFQPKVTQKNLHVIETVIEKLNALKESPDYQQEGETSTTRLDILGILGERFNELSKNGKTRELFNYVMFNEGSIDFSMRESTLVEPSPLEILTGSEEPYEDEQTWEPPYIHQLLDSKGIPYTIFDSLETNDLNLENDLGDHVRWAYDNIYRYSYQDSHQESTIARFHHGIQHVTRAANYACAFANLYRRHGNEEAQNLTETDIKLIQIALLFHDSAREGDDEDLWDHESAIFLYYYLTRVLHIDAETARFVAEATANKDPSPENGYFQLIEDEYGQLFWQFAKYEEGDFPAKNIYQKIIHDCDCLDIIRARNQYDATYLDFYKDIASKDNVALEEMAELVVEARGLIYSQGDSYITKKAEIKAGYENEEAHTRIIRDMQSEAYPILSTLYGKLLSIEELKAMTLVNLTPFDETAGMAGENLAAALRQGRVLARGITTPSAMPTPRPNKPTLTDETLAEREMRKSMRSDNINIKSRKEAPNLKYKNPLRSTSILGYGSGVYPAAGMLIFNPDIGQIKRISAEDFDSGRGQKNHLAHLQEKEYKESREILERELDDLHHKMKLGLFGKKTQLGSNYVELLYDINKYDAIFFTNDPTIGNEIAYNDFNPAHPLSPLLQAIYLQKQYARQYEETRKAYYERYGQERGETLFLERFGPNQFLPIYEYSGLRNKLTPYDTEKLTDENIVNMWVEMSSDFMRNALSHMGRDNSYDFYDELLYNMSIEDIKVLSMYKTKGNILAKVNQPADLSYNVELREKITDAIAKAKEKIIAEYEEAVFKRLQDNQLSPFSKEAFLALEYSPRLRELCSDKIKDDLLRFIYSPDGVISYKLSDIAPTSLKEKATTLDIQHCSTDERNFLCKNQFLQAFILCQQLGLKGEIHFLRNKVNELAIQVINDQNAFITGSKYELQSGLHQMINLNNIMTLIDKDNHLRDNIESILLEIVSKLIDTYTNERLNLYDSYMLLKTLQNAGIPDVKLKHYFRPVLNKANETLHERKSHDWGHYCSIAKLVGDEAKPYIYSWLNDYDKPFYSEINSMLETFKNAGIVFDDENLDVFKSLLEKIHYNDVAYNYVRLSYWLRVMNNLQSLASESHYSESQLEILKNQFDRVIEKLIKTTKSEYEHASYYSQEQKCYRQLTSFAEEINTILASDFCLPVPDSLITEFNLTLIAFSEMDLSQTKVDKSKFHLLKQLHNKLPNPEKREHAMEKLTEYMDSTEKVEKDQNQNISTAGL
>NZ_CP012019.1|WP_015961369.1|2555964_2557173_+|alpha/beta-hydrolase
MSDISRGDIRVKGFTDSEMDFQLIRQLGSSSYKAASVGECLNIANTMKNEDPEEWVRQFEQLAEWQKKDGLERMVKNHVISGREQLFKASNSFRAAEYYSPPSSEHHRKLGLNSADCFCTAISSMDIHFENHSIPYKNINLPCYFISPANDGEKRDTVMIVSGFDGTLEEEFLMRGLAAVERGYNVIHFAGPGQMDVFRKYPDTYFEPDFEQVVKRIINYFEFRQEINMAKLTLMGISFGGYFATRAASHEPRIKVLIANSPILDLHAYMCSFVKMDPCEMPDSEDFSINDLPSIPNEVMPPQLKAQTEHLIRRFGQPTFKATFNYLREFTVGNSLNHIKIPCLALLGSGEGGEPGKQFAEFCKITNSAQYEFSDFEGAGSHCQVGNVSYSNAVVYDWLDSL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012019_1	1.24\|2541945\|37\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2541945-2541981	37	KT271770	Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence	8173-8209	0	1.0
NZ_CP012019_1	1.36\|2542748\|34\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2542748-2542781	34	KT271770	Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence	8479-8512	0	1.0
NZ_CP012019_1	1.38\|2542882\|36\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2542882-2542917	36	KT271770	Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence	8196-8231	0	1.0
NZ_CP012019_1	1.25\|2542014\|34\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2542014-2542047	34	KT271770	Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence	8479-8512	1	0.971
NZ_CP012019_1	1.37\|2542814\|36\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2542814-2542849	36	KT271770	Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence	10766-10801	1	0.972
NZ_CP012019_1	1.22\|2541811\|36\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2541811-2541846	36	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	45764-45799	5	0.861
NZ_CP012019_1	1.35\|2542681\|35\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2542681-2542715	35	KT271770	Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence	3771-3805	5	0.857
NZ_CP012019_1	1.4\|2540604\|37\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2540604-2540640	37	MN812234	Flavobacterium phage vB_FspS_snusmum6-1, complete genome	2083-2119	6	0.838
NZ_CP012019_1	1.4\|2540604\|37\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2540604-2540640	37	MN812236	Flavobacterium phage vB_FspS_snusmum6-3, complete genome	2083-2119	6	0.838
NZ_CP012019_1	1.4\|2540604\|37\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2540604-2540640	37	MN812235	Flavobacterium phage vB_FspS_snusmum6-2, complete genome	2083-2119	6	0.838
NZ_CP012019_1	1.9\|2540939\|35\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2540939-2540973	35	MK288021	Bacillus phage pW2, complete genome	87640-87674	7	0.8
NZ_CP012019_1	1.23\|2541879\|34\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2541879-2541912	34	MN694803	Marine virus AFVG_250M814, complete genome	14801-14834	7	0.794
NZ_CP012019_1	1.25\|2542014\|34\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2542014-2542047	34	MN855968	Bacteriophage sp. isolate 450, complete genome	2290-2323	7	0.794
NZ_CP012019_1	1.7\|2540805\|34\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2540805-2540838	34	NC_019688	Clostridium perfringens plasmid pNetB-NE10, complete sequence	73102-73135	8	0.765
NZ_CP012019_1	1.7\|2540805\|34\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2540805-2540838	34	NZ_CP025502	Clostridium perfringens strain EHE-NE18 plasmid pJIR3535, complete sequence	30069-30102	8	0.765
NZ_CP012019_1	1.5\|2540673\|34\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2540673-2540706	34	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	1392850-1392883	9	0.735
NZ_CP012019_1	1.36\|2542748\|34\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2542748-2542781	34	NZ_CP018869	Sporosarcina sp. P37 plasmid pSporoP37, complete sequence	41490-41523	10	0.706
NZ_CP012019_1	1.3\|2540538\|34\|NZ_CP012019\|CRISPRCasFinder,CRT,PILER-CR	2540538-2540571	34	MF417875	Uncultured Caudovirales phage clone 10S_11, partial genome	27775-27808	11	0.676

1. spacer 1.24|2541945|37|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to KT271770 (Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence) position: , mismatch: 0, identity: 1.0

accatgaaagcattgaagtaaccgcttgctgcaatcg	CRISPR spacer
accatgaaagcattgaagtaaccgcttgctgcaatcg	Protospacer
*************************************

2. spacer 1.36|2542748|34|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to KT271770 (Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtccctttaactgctgccaacatcattgcgat	CRISPR spacer
ctgtccctttaactgctgccaacatcattgcgat	Protospacer
**********************************

3. spacer 1.38|2542882|36|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to KT271770 (Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence) position: , mismatch: 0, identity: 1.0

acctttgccaagagcaacgttcaccatgaaagcatt	CRISPR spacer
acctttgccaagagcaacgttcaccatgaaagcatt	Protospacer
************************************

4. spacer 1.25|2542014|34|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to KT271770 (Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence) position: , mismatch: 1, identity: 0.971

ctgtccctttaactgctgccaacatcattgccat	CRISPR spacer
ctgtccctttaactgctgccaacatcattgcgat	Protospacer
******************************* **

5. spacer 1.37|2542814|36|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to KT271770 (Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence) position: , mismatch: 1, identity: 0.972

agcatcgttgattacattaatagcaatggcacatgg	CRISPR spacer
agcatcgttgattacatcaatagcaatggcacatgg	Protospacer
*****************.******************

6. spacer 1.22|2541811|36|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 5, identity: 0.861

cacctgtaaacaatcctttcaaacttcctaaaacaa	CRISPR spacer
gaaatgtaaacaatccttttaaactgcctaaaacaa	Protospacer
 *  ***************.***** **********

7. spacer 1.35|2542681|35|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to KT271770 (Legionella pneumophila strain Murcia-2001 4983 plasmid Mobile Element-1, complete sequence) position: , mismatch: 5, identity: 0.857

gtaagtgctatagcaatgtggtttgacaagaacat	CRISPR spacer
gtaagcgctatagcaatgtggtttgacatatatat	Protospacer
*****.********************** . *.**

8. spacer 1.4|2540604|37|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to MN812234 (Flavobacterium phage vB_FspS_snusmum6-1, complete genome) position: , mismatch: 6, identity: 0.838

ctatattgaaatatttttcttctttttctatacctat	CRISPR spacer
ccatctcaaaatatttttcatctttttcgatacctat	Protospacer
*.** *..*********** ******** ********

9. spacer 1.4|2540604|37|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to MN812236 (Flavobacterium phage vB_FspS_snusmum6-3, complete genome) position: , mismatch: 6, identity: 0.838

ctatattgaaatatttttcttctttttctatacctat	CRISPR spacer
ccatctcaaaatatttttcatctttttcgatacctat	Protospacer
*.** *..*********** ******** ********

10. spacer 1.4|2540604|37|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to MN812235 (Flavobacterium phage vB_FspS_snusmum6-2, complete genome) position: , mismatch: 6, identity: 0.838

ctatattgaaatatttttcttctttttctatacctat	CRISPR spacer
ccatctcaaaatatttttcatctttttcgatacctat	Protospacer
*.** *..*********** ******** ********

11. spacer 1.9|2540939|35|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to MK288021 (Bacillus phage pW2, complete genome) position: , mismatch: 7, identity: 0.8

ttcttcaatagtcattactttacctct--ctttagat	CRISPR spacer
ttctgcaattgtcattactttacctccaacttcaa--	Protospacer
**** **** ****************.  ***.*.

12. spacer 1.23|2541879|34|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to MN694803 (Marine virus AFVG_250M814, complete genome) position: , mismatch: 7, identity: 0.794

actacaatataaatcacatttactattttcttga	CRISPR spacer
tgcctaatataaatcacttttacgattttcttga	Protospacer
  . .************ ***** **********

13. spacer 1.25|2542014|34|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to MN855968 (Bacteriophage sp. isolate 450, complete genome) position: , mismatch: 7, identity: 0.794

ctgtccctttaactgctgccaacatcattgccat	CRISPR spacer
ctggcatcataactgctgccatcatcatcgccat	Protospacer
*** * .. ************ ******.*****

14. spacer 1.7|2540805|34|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to NC_019688 (Clostridium perfringens plasmid pNetB-NE10, complete sequence) position: , mismatch: 8, identity: 0.765

atttttacattcattctataagtttgcgaaatat-	CRISPR spacer
ctttttacattaattctataagttt-caggccatt	Protospacer
 ********** ************* *... .**

15. spacer 1.7|2540805|34|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025502 (Clostridium perfringens strain EHE-NE18 plasmid pJIR3535, complete sequence) position: , mismatch: 8, identity: 0.765

atttttacattcattctataagtttgcgaaatat-	CRISPR spacer
ctttttacattaattctataagttt-caggccatt	Protospacer
 ********** ************* *... .**

16. spacer 1.5|2540673|34|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 9, identity: 0.735

agttaaatacaaacgcgtaaaatctaagttatct	CRISPR spacer
aggcgcatagatacgcgtaaaatctaagtttaat	Protospacer
** .. *** * ******************   *

17. spacer 1.36|2542748|34|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018869 (Sporosarcina sp. P37 plasmid pSporoP37, complete sequence) position: , mismatch: 10, identity: 0.706

ctgtccctttaactgctgccaacatcattgcgat	CRISPR spacer
aattcaagataaatgctgccaacatgattgcgaa	Protospacer
   **    *** ************ *******

18. spacer 1.3|2540538|34|NZ_CP012019|CRISPRCasFinder,CRT,PILER-CR matches to MF417875 (Uncultured Caudovirales phage clone 10S_11, partial genome) position: , mismatch: 11, identity: 0.676

gaatgatgatgtgcaagctattttaccttgggat	CRISPR spacer
cgttgatgctgtgctagctattttacctaattga	Protospacer
 . ***** ***** ************* .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1028791 : 1035630

Acinetobacter_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027226249.1\|1028791_1029568_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	3.3e-57	48.2
WP_014841226.1\|1029560_1030595_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.7e-75	47.3
WP_011945952.1\|1030572_1031151_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.3e-55	53.2
WP_010946572.1\|1031184_1031910_-	LPS export ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-17	28.3
WP_011215024.1\|1031906_1032416_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_011945954.1\|1032396_1032966_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_011945955.1\|1032962_1033490_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	1.4e-27	47.7
WP_010946576.1\|1033503_1034466_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.2e-38	34.1
WP_010946577.1\|1034832_1035630_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.3e-21	33.8

DBSCAN-SWA_2

1129689 : 1203280

Megavirus(16.67%)

tRNA,transposase,protease,integrase

attL 1157681:1157695|attR 1203216:1203230

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013101272.1\|1129689_1132485_+\|tRNA	isoleucine--tRNA ligase	K7YVP8	Megavirus	5.2e-89	27.7
WP_011213363.1\|1132481_1132946_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_011946028.1\|1133414_1133978_-	multidrug DMT transporter permease	NA	NA	NA	NA
WP_027226224.1\|1134153_1136343_-	hypothetical protein	NA	NA	NA	NA
WP_027220947.1\|1136584_1139710_-	hypothetical protein	NA	NA	NA	NA
WP_027220948.1\|1139972_1140860_+	GTPase Era	NA	NA	NA	NA
WP_027220949.1\|1140849_1141539_+	DNA repair protein RecO	NA	NA	NA	NA
WP_027226223.1\|1141793_1142540_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_014841290.1\|1142526_1144344_+	2-oxoacid:acceptor oxidoreductase subunit alpha	NA	NA	NA	NA
WP_061636284.1\|1144327_1145296_+	2-oxoacid:ferredoxin oxidoreductase subunit beta	NA	NA	NA	NA
WP_014843513.1\|1145499_1146696_-\|transposase	IS4-like element ISLpn1 family transposase	S5FM71	Shigella_phage	2.3e-46	32.7
WP_010946684.1\|1147048_1147723_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	4.0e-27	44.5
WP_061784220.1\|1147941_1148748_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_061784221.1\|1148759_1150202_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_011213376.1\|1150247_1151126_+	patatin-like phospholipase RssA	NA	NA	NA	NA
WP_027225604.1\|1151152_1152820_+	AMP-binding protein	A0A1V0SBX8	Catovirus	3.4e-43	26.0
WP_061784222.1\|1152798_1156260_-	transcription-repair coupling factor	NA	NA	NA	NA
WP_061784223.1\|1156336_1157599_-	DNA recombination protein RmuC	NA	NA	NA	NA
WP_011946047.1\|1157602_1158781_-	DUF4785 family protein	NA	NA	NA	NA
1157681:1157695	attL	NA	NA	NA	NA
WP_027219615.1\|1158777_1159677_-	hypothetical protein	NA	NA	NA	NA
WP_011946049.1\|1159898_1161920_+	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	8.6e-134	41.5
WP_061784224.1\|1162039_1164205_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011213384.1\|1164201_1165179_+	ABC transporter permease	NA	NA	NA	NA
WP_027220957.1\|1165202_1166549_+	ABC transporter permease	NA	NA	NA	NA
WP_061637662.1\|1166623_1170070_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	1.7e-185	35.5
WP_061784225.1\|1170155_1171397_-	lpg0963 family Dot/Icm T4SS effector	NA	NA	NA	NA
WP_061637661.1\|1171726_1172611_+	decaprenyl-phosphate phosphoribosyltransferase	NA	NA	NA	NA
WP_027225598.1\|1172571_1174119_+	hypothetical protein	NA	NA	NA	NA
WP_027225597.1\|1174173_1176051_+	polysaccharide biosynthesis protein	L7Y3T9	Megavirus	1.4e-24	28.9
WP_080274557.1\|1176196_1176790_-	lpg0967 family Dot/Icm T4SS effector	NA	NA	NA	NA
WP_027225595.1\|1177073_1178768_-	Dot/Icm T4SS effector v-ATPase inhibitor SidK	NA	NA	NA	NA
WP_061784226.1\|1179235_1179976_+	Dot/Icm T4SS effector RavK	NA	NA	NA	NA
WP_014843513.1\|1180320_1181517_+\|transposase	IS4-like element ISLpn1 family transposase	S5FM71	Shigella_phage	2.3e-46	32.7
WP_010946705.1\|1181635_1183099_-	amino acid permease	NA	NA	NA	NA
WP_027225594.1\|1183479_1184625_+	multidrug DMT transporter permease	NA	NA	NA	NA
WP_042755007.1\|1185026_1188143_+	site-specific DNA-methyltransferase	A0A2R3ZYF2	Campylobacter_phage	3.3e-15	24.6
WP_042755006.1\|1188142_1191448_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_042755005.1\|1191889_1192162_+	hypothetical protein	NA	NA	NA	NA
WP_042755004.1\|1192237_1193989_+	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	1.3e-66	32.7
WP_042755003.1\|1194111_1194921_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_136629085.1\|1195322_1195511_+	hypothetical protein	NA	NA	NA	NA
WP_042755002.1\|1195524_1197297_-	AAA family ATPase	NA	NA	NA	NA
WP_042755001.1\|1197490_1197754_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_042755000.1\|1198289_1198649_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_042754999.1\|1199024_1199531_-	type II toxin-antitoxin system YhaV family toxin	NA	NA	NA	NA
WP_042754998.1\|1199530_1199878_-	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA
WP_061784227.1\|1199947_1201198_-\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	3.6e-13	26.1
WP_105625152.1\|1202112_1203280_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.0e-62	45.1
1203216:1203230	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1315654 : 1321591

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027220755.1\|1315654_1316728_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.1e-30	28.6
WP_027220754.1\|1316712_1317327_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	6.0e-22	38.4
WP_027220753.1\|1317323_1318532_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.5e-98	48.5
WP_050598095.1\|1318539_1319007_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.2e-23	49.1
WP_010946915.1\|1319132_1320770_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.6e-154	52.3
WP_027226714.1\|1320766_1321591_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.3e-53	43.5

DBSCAN-SWA_4

2238200 : 2248323

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011214266.1\|2238200_2239889_-	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	8.0e-16	30.4
WP_011214267.1\|2240020_2241028_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011214268.1\|2241151_2242477_-	adenosylhomocysteinase	S4VPF6	Pandoravirus	1.8e-47	31.2
WP_061638022.1\|2242495_2243644_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	3.8e-126	58.2
WP_011214270.1\|2243852_2244965_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.7e-51	35.4
WP_010947740.1\|2245060_2246200_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.6e-23	26.9
WP_011946925.1\|2246388_2248323_-	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	1.3e-147	49.6

DBSCAN-SWA_5

2717570 : 2747245

Klebsiella_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072356411.1\|2717570_2717651_-\|transposase	transposase	NA	NA	NA	NA
WP_014842352.1\|2718159_2719011_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_027265135.1\|2719007_2719616_-	AbiEi antitoxin N-terminal domain-containing protein	NA	NA	NA	NA
WP_014842354.1\|2719858_2720122_+	hypothetical protein	NA	NA	NA	NA
WP_014842355.1\|2720121_2720772_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_014842356.1\|2720920_2723008_+	hypothetical protein	NA	NA	NA	NA
WP_014842357.1\|2723009_2723390_-	hypothetical protein	NA	NA	NA	NA
WP_014842358.1\|2723609_2724170_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	1.9e-54	57.7
WP_014842359.1\|2724180_2724498_-	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_014842360.1\|2724452_2724713_-	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_014842361.1\|2724883_2727928_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_014842362.1\|2728598_2729747_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_014842363.1\|2729776_2730895_+	DUF3494 domain-containing protein	NA	NA	NA	NA
WP_154080660.1\|2731198_2731357_+	hypothetical protein	NA	NA	NA	NA
WP_027265134.1\|2731404_2731746_+	helix-turn-helix domain-containing protein	A0A218MNC9	uncultured_virus	4.5e-11	39.0
WP_027265133.1\|2731762_2732254_+\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	1.3e-11	25.8
WP_014842364.1\|2732502_2732754_-	hypothetical protein	NA	NA	NA	NA
WP_014842365.1\|2732834_2733029_-	CsbD family protein	NA	NA	NA	NA
WP_014842366.1\|2733161_2733515_-	PRC-barrel domain-containing protein	NA	NA	NA	NA
WP_014842368.1\|2734371_2734875_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014842369.1\|2734877_2736059_-	acetylornithine deacetylase	NA	NA	NA	NA
WP_065211439.1\|2736363_2736531_+	DUF3309 domain-containing protein	NA	NA	NA	NA
WP_014842370.1\|2736655_2737861_+	fatty acid desaturase	NA	NA	NA	NA
WP_014842371.1\|2738067_2739843_-	SLC13 family permease	NA	NA	NA	NA
WP_080031823.1\|2740182_2740617_+	TIGR00341 family protein	NA	NA	NA	NA
WP_014842373.1\|2740652_2740979_+\|transposase	transposase	NA	NA	NA	NA
WP_110540214.1\|2741037_2741478_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_014842375.1\|2741493_2741820_+	DUF389 domain-containing protein	NA	NA	NA	NA
WP_014842376.1\|2742087_2743098_+	fatty acid desaturase	NA	NA	NA	NA
WP_014842377.1\|2743392_2743728_+	hypothetical protein	NA	NA	NA	NA
WP_014842378.1\|2743897_2745229_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	3.0e-58	35.6
WP_061784407.1\|2746069_2747245_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	2.5e-16	23.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage