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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP014635 Corynebacterium simulans strain Wattiau chromosome, complete genome 2 crisprs WYL,cas4,DEDDh,cas3,csa3,DinG,cas3HD,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2 0 7 3 0

Results visualization

1. NZ_CP014635
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014635_1 1389150-1389242 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP014635_2 2200159-2201955 TypeI-E NA
29 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,cas3HD

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP014635_2 2.1|2200187|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2200187-2200219 33 NC_014213 Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence 81153-81185 9 0.727
NZ_CP014635_2 2.17|2201163|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2201163-2201195 33 NZ_CP031943 Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence 14293-14325 9 0.727
NZ_CP014635_2 2.19|2201285|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2201285-2201317 33 NZ_CP040760 Paracoccus sp. 2251 plasmid unnamed6, complete sequence 72488-72520 9 0.727
NZ_CP014635_2 2.19|2201285|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2201285-2201317 33 NZ_CP040765 Paracoccus sp. 2251 plasmid unnamed1, complete sequence 111077-111109 9 0.727
NZ_CP014635_2 2.7|2200553|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2200553-2200585 33 NZ_CP009296 Novosphingobium pentaromativorans US6-1 plasmid pLA2, complete sequence 13937-13969 10 0.697
NZ_CP014635_2 2.9|2200675|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2200675-2200707 33 NZ_CP009296 Novosphingobium pentaromativorans US6-1 plasmid pLA2, complete sequence 13937-13969 10 0.697
NZ_CP014635_2 2.27|2201773|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2201773-2201805 33 MH992213 Apis mellifera associated microvirus 15 isolate INH_SP_268, complete genome 14-46 10 0.697
NZ_CP014635_2 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2201834-2201866 33 AP014097 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C33A-MedDCM-OCT-S23-C1, *** SEQUENCING IN PROGRESS *** 5923-5955 10 0.697
NZ_CP014635_2 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2201834-2201866 33 AP014100 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C33B-MedDCM-OCT-S33-C21, *** SEQUENCING IN PROGRESS *** 35802-35834 10 0.697
NZ_CP014635_2 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2201834-2201866 33 GU943069 Uncultured phage MedDCM-OCT-S08-C1115 genomic sequence 6323-6355 10 0.697
NZ_CP014635_2 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2201834-2201866 33 AP014098 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C33A-MedDCM-OCT-S43-C2, *** SEQUENCING IN PROGRESS *** 5333-5365 10 0.697
NZ_CP014635_2 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2201834-2201866 33 AP014489 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C33B-MedDCM-OCT-S46-C21, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces 4159-4191 10 0.697
NZ_CP014635_2 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2201834-2201866 33 AP014101 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C33B-MedDCM-OCT-S36-C1, *** SEQUENCING IN PROGRESS *** 11377-11409 10 0.697
NZ_CP014635_2 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT 2201834-2201866 33 AP014103 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C33B-MedDCM-OCT-S40-C122, *** SEQUENCING IN PROGRESS *** 5131-5163 10 0.697

1. spacer 2.1|2200187|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to NC_014213 (Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence) position: , mismatch: 9, identity: 0.727

ccaccagctgcgctacccggtcacccttatgca	CRISPR spacer
ggcccagctgcgctacccggtaaacctggcgga	Protospacer
   ****************** * *** ..* *

2. spacer 2.17|2201163|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031943 (Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.727

cgacgctggcttgtttttaacatccgcccacgt	CRISPR spacer
tatcagtggcttgcttttaaaatccgcccagtt	Protospacer
.. *. *******.****** *********  *

3. spacer 2.19|2201285|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040760 (Paracoccus sp. 2251 plasmid unnamed6, complete sequence) position: , mismatch: 9, identity: 0.727

gtagcggcgcgagagcgtccagcgcccccacaa	CRISPR spacer
tgagcggcgcgagagcgtcgagcacccgttcgg	Protospacer
  ***************** ***.*** . *..

4. spacer 2.19|2201285|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040765 (Paracoccus sp. 2251 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

gtagcggcgcgagagcgtccagcgcccccacaa	CRISPR spacer
tgagcggcgcgagagcgtcgagcacccgttcgg	Protospacer
  ***************** ***.*** . *..

5. spacer 2.7|2200553|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009296 (Novosphingobium pentaromativorans US6-1 plasmid pLA2, complete sequence) position: , mismatch: 10, identity: 0.697

catcccctcgacaaatgggtgccgggtgatgag	CRISPR spacer
gccgtgctcgacaaactggtgccgggtgatgct	Protospacer
  . . *********. **************  

6. spacer 2.9|2200675|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009296 (Novosphingobium pentaromativorans US6-1 plasmid pLA2, complete sequence) position: , mismatch: 10, identity: 0.697

catcccctcgacaaatgggtgccgggtgatgag	CRISPR spacer
gccgtgctcgacaaactggtgccgggtgatgct	Protospacer
  . . *********. **************  

7. spacer 2.27|2201773|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to MH992213 (Apis mellifera associated microvirus 15 isolate INH_SP_268, complete genome) position: , mismatch: 10, identity: 0.697

gtatctggacgagctgacaggcaacgagcgggt	CRISPR spacer
cccccgtcacgagctgccaggcatcgagcgggg	Protospacer
 . .*   ******** ****** ******** 

8. spacer 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to AP014097 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C33A-MedDCM-OCT-S23-C1, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.697

cgcagtgatggtcacgttgtacttggtggaagc	CRISPR spacer
attggtgatggtgaagttgtacttggtggtgcg	Protospacer
  ..******** * ************** .  

9. spacer 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to AP014100 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C33B-MedDCM-OCT-S33-C21, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.697

cgcagtgatggtcacgttgtacttggtggaagc	CRISPR spacer
attggtgatggtgaagttgtacttggtggtgcg	Protospacer
  ..******** * ************** .  

10. spacer 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to GU943069 (Uncultured phage MedDCM-OCT-S08-C1115 genomic sequence) position: , mismatch: 10, identity: 0.697

cgcagtgatggtcacgttgtacttggtggaagc	CRISPR spacer
attggtgatggtgaagttgtacttggtggtgcg	Protospacer
  ..******** * ************** .  

11. spacer 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to AP014098 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C33A-MedDCM-OCT-S43-C2, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.697

cgcagtgatggtcacgttgtacttggtggaagc	CRISPR spacer
attggtgatggtgaagttgtacttggtggtgcg	Protospacer
  ..******** * ************** .  

12. spacer 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to AP014489 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C33B-MedDCM-OCT-S46-C21, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 10, identity: 0.697

cgcagtgatggtcacgttgtacttggtggaagc	CRISPR spacer
attggtgatggtgaagttgtacttggtggtgcg	Protospacer
  ..******** * ************** .  

13. spacer 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to AP014101 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C33B-MedDCM-OCT-S36-C1, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.697

cgcagtgatggtcacgttgtacttggtggaagc	CRISPR spacer
attggtgatggtgaagttgtacttggtggtgcg	Protospacer
  ..******** * ************** .  

14. spacer 2.28|2201834|33|NZ_CP014635|PILER-CR,CRISPRCasFinder,CRT matches to AP014103 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C33B-MedDCM-OCT-S40-C122, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.697

cgcagtgatggtcacgttgtacttggtggaagc	CRISPR spacer
attggtgatggtgaagttgtacttggtggtgcg	Protospacer
  ..******** * ************** .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1060075 : 1070287 9 uncultured_virus(33.33%) tRNA NA
DBSCAN-SWA_2 2110906 : 2122201 11 Mycobacterium_phage(12.5%) protease NA
DBSCAN-SWA_3 2257066 : 2314432 54 Corynebacterium_phage(27.27%) transposase,protease,integrase attL 2267885:2267903|attR 2324550:2324568
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage