CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP012489	Enterobacter sp. FY-07 plasmid pAKI40B, complete sequence	0 crisprs	NA	0	0
NZ_CP012490	Enterobacter sp. FY-07 plasmid pAKI40C, complete sequence	0 crisprs	NA	0	0
NZ_CP012487	Enterobacter sp. FY-07, complete genome	4 crisprs	cas3,csa3,PD-DExK,DEDDh,DinG,WYL	1	8
NZ_CP012488	Enterobacter sp. FY-07 plasmid pAKI40A, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012487_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012487_1

616323-616438

Orphan

Consensus_repeat	Method
GCGGCGGAAGAAGCTCGTCGTA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP012487_1

>merge|NZ_CP012487|1|616323-616438|PILER-CR
GGCGGAAAAAGCTCGTCGTGAATCCGAAGCGCAAGAACTCAAGCGCAAAGCGGAGGAAGAGGCTCGTCGTAAACTGGAAGAAAACGCGCGTCGCGTAGCGGAAGAAGCTCGTCGTA

>NZ_CP012487|1|1|616323-616438|PILER-CR
GGCGGAAAAAGCTCGTCGTGAA	TCCGAAGCGCAAGAACTCAAGCGCAAAGC
GGAGGAAGAGGCTCGTCGTAAA	CTGGAAGAAAACGCGCGTCGCGT
AGCGGAAGAAGCTCGTCGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012487.1\|WP_061493023.1\|618596_618998_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP012487.1\|WP_061493028.1\|625980_627225_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_CP012487.1\|WP_061493024.1\|618997_619945_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP012487.1\|WP_061493030.1\|628422_629301_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP012487.1\|WP_061493019.1\|611458_611665_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012487.1\|WP_082794122.1\|613751_614243_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP012487.1\|WP_061493031.1\|629308_630304_-\|protease	unknown	unknown	gnl\|CDD\|223896
NZ_CP012487.1\|WP_061493021.1\|614271_615759_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP012487.1\|WP_061493025.1\|620607_622743_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP012487.1\|WP_061493017.1\|609391_610729_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|236787
NZ_CP012487.1\|WP_061493014.1\|605789_606416_+\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	unknown	unknown	gnl\|CDD\|183025
NZ_CP012487.1\|WP_061493016.1\|608550_609399_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|183230
NZ_CP012487.1\|WP_061493029.1\|627273_628281_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP012487.1\|WP_061493018.1\|610956_611289_+\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NZ_CP012487.1\|WP_017457357.1\|620092_620362_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP012487.1\|WP_061493015.1\|606518_608450_+\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|182683
NZ_CP012487.1\|WP_061493027.1\|623915_625826_+\|DEAD/DEAH-family-ATP-dependent-RNA-helicase	unknown	unknown	gnl\|CDD\|236941
NZ_CP012487.1\|WP_061493026.1\|622851_623736_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_CP012487.1\|WP_061493013.1\|605377_605671_-\|ribosome-assembly-RNA-binding-protein-YhbY	unknown	unknown	gnl\|CDD\|182393
NZ_CP012487.1\|WP_061493020.1\|611782_613129_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434

Protein	Function_ID	Function_description	E-value
NZ_CP012487.1\|WP_061493023.1\|618596_618998_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	2.38523e-52
NZ_CP012487.1\|WP_061493028.1\|625980_627225_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NZ_CP012487.1\|WP_061493024.1\|618997_619945_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP012487.1\|WP_061493030.1\|628422_629301_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP012487.1\|WP_082794122.1\|613751_614243_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	7.45058e-78
NZ_CP012487.1\|WP_061493031.1\|629308_630304_-\|protease	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.34179e-115
NZ_CP012487.1\|WP_061493021.1\|614271_615759_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP012487.1\|WP_061493025.1\|620607_622743_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP012487.1\|WP_061493017.1\|609391_610729_+\|phosphoglucosamine-mutase	gnl\|CDD\|236787	PRK10887, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP012487.1\|WP_061493014.1\|605789_606416_+\|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE	gnl\|CDD\|183025	PRK11188, rrmJ, 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE.	5.44433e-163
NZ_CP012487.1\|WP_061493016.1\|608550_609399_+\|dihydropteroate-synthase	gnl\|CDD\|183230	PRK11613, folP, dihydropteroate synthase; Provisional.	0
NZ_CP012487.1\|WP_061493029.1\|627273_628281_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP012487.1\|WP_061493018.1\|610956_611289_+\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	1.82593e-26
NZ_CP012487.1\|WP_017457357.1\|620092_620362_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.31854e-53
NZ_CP012487.1\|WP_061493015.1\|606518_608450_+\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|182683	PRK10733, hflB, ATP-dependent zinc metalloprotease FtsH.	0
NZ_CP012487.1\|WP_061493027.1\|623915_625826_+\|DEAD/DEAH-family-ATP-dependent-RNA-helicase	gnl\|CDD\|236941	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.	0
NZ_CP012487.1\|WP_061493026.1\|622851_623736_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_CP012487.1\|WP_061493013.1\|605377_605671_-\|ribosome-assembly-RNA-binding-protein-YhbY	gnl\|CDD\|182393	PRK10343, PRK10343, ribosome assembly RNA-binding protein YhbY.	1.76644e-54
NZ_CP012487.1\|WP_061493020.1\|611782_613129_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0

>NZ_CP012487.1|WP_061493021.1|614271_615759_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRRWLVVEEVTQPTREITLEAARYEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVEDLQSKHQAEAHAAIDTFTRYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDTVEALRDRAKNALTTLALAQEESLSDKAPAEDLLNLEGLDRALAFKLAARGVCTLEDLAEQGVDDLSDIEGLTDEKAGELIMAARNICWFGDEA
>NZ_CP012487.1|WP_082794122.1|613751_614243_+|ribosome-maturation-factor-RimP
MGYTPFFYVLGVDLSTLEQKLTEMVTAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLERPLFTAAHYTRFKGEEVSLVLRMAVQNRRKWQGIIKDVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_CP012487.1|WP_061493020.1|611782_613129_-|argininosuccinate-synthase
MTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAKEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELKIYKPWLDTDFIDELGGRQEMSEFMTASGFDYKMSAEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDENVKIQAEEVTVRFERGHPVALNGKTFADDVELMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDPQALMLRDSLQRWVASAITGEVTLELRRGNDYSILNTVSDNLTYKAERLTMEKGESVFSPDDRIGQLTMRNLDITDTREKLFNYVQTGLLSANSGNGLPQVENLENSDKK
>NZ_CP012487.1|WP_061493019.1|611458_611665_+|hypothetical-protein
MVLFFLVTYGFRICISHLFFSSWLSASVKNEDLLFIAALILGQGHIVQTNTGLNEHRFSLLFSKEVVH
>NZ_CP012487.1|WP_061493018.1|610956_611289_+|preprotein-translocase-subunit-SecG
MYEALLVFFLIVALALVGLIMLQQGKGADMGASFGAGASGTLFGSSGSGNFMTRMTAVLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPAKPTSDIPH
>NZ_CP012487.1|WP_061493017.1|609391_610729_+|phosphoglucosamine-mutase
MSNRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARHGSRKIIIGKDTRISGYMLESALEAGLAAAGLSASFTGPMPTPAVAYLTRTFRAEAGIVISASHNPFYDNGIKFFSIDGTKLPDAVEEAIEAEMEKELTCVDSAELGKASRIVDAAGRYIEFCKATFPNELSLNELKIVVDCANGATYHIAPNVFRELGAKVIPMGCEPDGVNINEKCGATDVAALQQRVLAEKADLGIAFDGDGDRVIMVDHLGNKVDGDQIMYIIAREGLRQGQLRGGAVGTLMSNMGLEVALKQLGIPFTRAKVGDRYVLEKMQEKGWRIGAENSGHVILLDKTTTGDGIVAGLQVVAAMVRNHMSLHDLCSGMKMFPQVLVNVRFTAGNGDPLEDDTVKAVTAEVEATLGNRGRVLLRKSGTEPLIRVMVEGEDEAQVTALANRIADAVKAV
>NZ_CP012487.1|WP_061493016.1|608550_609399_+|dihydropteroate-synthase
MKLHAQGTTLDLSHPHVMGILNVTPDSFSDGGTHNTLIEAVKHANLMINAGATIVDIGGESTRPGAADVSVEEELERVIPVVEAIAQRFEVWISVDTSKPEVIRESARAGAHIINDIRSLTEPGALEAAAQTGLPVCLMHMQGQPKTMQEAPKYDDVYTDVNRFFVEHIARCEQAGIAKEKLLLDPGFGFGKNLSHNYALLARLAEFHHFGLPLLVGMSRKSMIGQLLNVGPSERLSGSLACAVIAAMQGAQIIRVHDVKETVEAMRVVEATLSAKENKRYE
>NZ_CP012487.1|WP_061493015.1|606518_608450_+|ATP-dependent-zinc-metalloprotease-FtsH
MAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLANIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVGELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLSPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVATNLARNMVTQWGFSDKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLNDNMDILHAMKDALMKYETIDAPQIDDLMSRRDVRPPAGWEEPGANNSDNNGTPRAPRPVDEPRTPNPGNTMSEQLGDK
>NZ_CP012487.1|WP_061493014.1|605789_606416_+|23S-rRNA-(uridine(2552)-2'-O)-methyltransferase-RlmE
MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTIVDLGAAPGGWSQYAVTQIGGNGRIIACDLLPMDPIVGVDFLQGDFRDELVLKALLDRVGDSKVQVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDVLAPGGSFLVKVFQGEGFDEYLTEIRSLFTKVKVRKPDSSRARSREVYIVATGRK
>NZ_CP012487.1|WP_061493013.1|605377_605671_-|ribosome-assembly-RNA-binding-protein-YhbY
MNLSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALEHHELIKVKIASEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTAERKIALPR
>NZ_CP012487.1|WP_061493023.1|618596_618998_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQELQKEIAIILQREIKDPRLGMMTTVSGVEVSRDLAYAKVFVTFLNDKDEASVKAGIKALHDASGFIRTLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTSVVKHDDERRVNPDDSKED
>NZ_CP012487.1|WP_061493024.1|618997_619945_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDVHGVLLLDKQQGASSNDVLQKVKRLYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPLTFTAEQLAAALESFRGDTQQIPSMYSALKYQGKKLYEYARQGIDVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIVDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEQLRELVEQAEQQAIPAAQLLDPLLMPMDSPASDFPVVNIPSVVAAYFKNGQPVRTSAAPKEGLVRVTEGDEAKFIGMGEIDDEGRIAPRRLVVEYPAV
>NZ_CP012487.1|WP_017457357.1|620092_620362_+|30S-ribosomal-protein-S15
MSLSVEAKAKIVSEFGRGSNDSGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_CP012487.1|WP_061493025.1|620607_622743_+|polyribonucleotide-nucleotidyltransferase
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVSMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKASKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINELVKEAGKPRWDWQPEAVNEALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKKVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDAEKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQTQPAEAAEAPQAEQGE
>NZ_CP012487.1|WP_061493026.1|622851_623736_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALHYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYIVERKLDEKQAKEALKQRFEKSDQEQWGWNIVEFYLGDISEATLMDRLKADATDNTSLAEHLSETNFYLGKYYLSLGDKDSATALFKLAVANNVHNFVEHRYALLELALLGQEHDDLAESDQQ
>NZ_CP012487.1|WP_061493027.1|623915_625826_+|DEAD/DEAH-family-ATP-dependent-RNA-helicase
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPDLRAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSSEEEMDIETLAAALLKMAQGERPLILPPDAPMRPRREFRERDDRFERRGDRNDRGPRGDRPERGGEDRPRRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRERSERRGGGERRGGGFGGERREGGRGGEGRRFSGERQEGRGFGGERRAPRRDRDDSAPRRRNDA
>NZ_CP012487.1|WP_061493028.1|625980_627225_+|tryptophan-permease
MSTLTTTQASPSLFGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSLLALVFTWFCMLHSGLMILEANLNYRSGASFDTITKDLLGKGWNLVNGVSIAFVLYILTYAYISASGSILHHTFSELSLNVPARLAGFCFALGVAFIVWLSTHAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLLNVAQSDTSYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIIRCLVYGTLLALGLYVIWLLVTMGNIPRPAFIDIAAKGGNIDVLVQALSGVLNSRSLDLLLVIFSNFAVASSFLGVTLGLFDYLADLFNVDDSPLGRFKTALLTFTPPIIGGVLWPNGFLYAIGYAGLAATIWAAIVPALLANASRKRFGSPIFRVWGGKPMIVLILLFGAGNAVVHLLSSFNLLPVYQ
>NZ_CP012487.1|WP_061493029.1|627273_628281_-|LLM-class-flavin-dependent-oxidoreductase
MADKTLPFSVLDLAPIPQHSSAREAFTHSLDLAKLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTQTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSERLEKPYAMVCINIVAADSNRDAEFLFTSMQQAFVKLRRGESAQLPPPIESMDQFWSPAEQYGVQQALSMSLVGDKAKVRHGLESILRETDADEIMVNGQIFDHQARLHSFELAMQVKEELLG
>NZ_CP012487.1|WP_061493030.1|628422_629301_-|U32-family-peptidase
MKYSLGPVLYYWSKETLEDFYHQAANSTADVIYLGEAVCSKRRATKVGDWLDMAKALATSGKQVVLSTLALVQASSELNELKRYVDNGEFLLEASDLGVVNMCADRKLPFVAGHALNCYNAVTLRLLLKQGMVRWCMPVELSRDWLINLLDQCDALGIRQQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRSMLSQENQQVFVLNGIQTMSGYVYNLGNELTSMNGIVDMVRLSPMGNDTFAMLDAFRRNETGAAPLPLASNSDCNGYWRRLPGLALQQ
>NZ_CP012487.1|WP_061493031.1|629308_630304_-|protease
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYSRWERAVDMAAQIGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELLAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCMASPQHFVPQPAWMDTLGAMSEGTQTTLGAYHRKWQ

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Crispr_ID: NZ_CP012487_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012487_2

625645-625743

Orphan

Consensus_repeat	Method
GTGGTTTCGGTGGCGAGCGTCGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012487_2

>merge|NZ_CP012487|2|625645-625743|CRISPRCasFinder
GTCGCGGTGGTGGTGAGCGTCGTGGCGGTGGTTTCGGTGGCGAGCGTCGTGAAGGCGGTCGCGGTGGTGAAGGTCGCCGTTTCAGCGGTGAGCGTCAGG

>NZ_CP012487|2|1|625645-625743|CRISPRCasFinder
GTCGCGGTGGTGGTGAGCGTCGTG	GCGGTGGTTTCGGTGGCGAGCGTCGTGAAGGCGGTCGCGGTGGTGAAGGTC
GCCGTTTCAGCGGTGAGCGTCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012487.1\|WP_061493023.1\|618596_618998_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP012487.1\|WP_061493028.1\|625980_627225_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_CP012487.1\|WP_061493024.1\|618997_619945_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP012487.1\|WP_061493036.1\|632330_632849_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
NZ_CP012487.1\|WP_082794122.1\|613751_614243_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP012487.1\|WP_061493019.1\|611458_611665_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012487.1\|WP_061493022.1\|615783_618495_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP012487.1\|WP_061493021.1\|614271_615759_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP012487.1\|WP_061493025.1\|620607_622743_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP012487.1\|WP_061493034.1\|631550_631853_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP012487.1\|WP_061493030.1\|628422_629301_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP012487.1\|WP_061493033.1\|631060_631564_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP012487.1\|WP_061493032.1\|630542_631067_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP012487.1\|WP_061493029.1\|627273_628281_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP012487.1\|WP_061493031.1\|629308_630304_-\|protease	unknown	unknown	gnl\|CDD\|223896
NZ_CP012487.1\|WP_017457357.1\|620092_620362_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP012487.1\|WP_061493035.1\|631907_632345_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP012487.1\|WP_061493037.1\|632970_633624_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP012487.1\|WP_061493026.1\|622851_623736_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_CP012487.1\|WP_061493020.1\|611782_613129_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434

Protein	Function_ID	Function_description	E-value
NZ_CP012487.1\|WP_061493023.1\|618596_618998_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	2.38523e-52
NZ_CP012487.1\|WP_061493028.1\|625980_627225_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NZ_CP012487.1\|WP_061493024.1\|618997_619945_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP012487.1\|WP_061493036.1\|632330_632849_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	1.64037e-80
NZ_CP012487.1\|WP_061493022.1\|615783_618495_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP012487.1\|WP_082794122.1\|613751_614243_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	7.45058e-78
NZ_CP012487.1\|WP_061493021.1\|614271_615759_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP012487.1\|WP_061493025.1\|620607_622743_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP012487.1\|WP_061493034.1\|631550_631853_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	1.6808e-44
NZ_CP012487.1\|WP_061493030.1\|628422_629301_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP012487.1\|WP_061493033.1\|631060_631564_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	6.51108e-60
NZ_CP012487.1\|WP_061493032.1\|630542_631067_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.30761e-73
NZ_CP012487.1\|WP_061493029.1\|627273_628281_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP012487.1\|WP_061493031.1\|629308_630304_-\|protease	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.34179e-115
NZ_CP012487.1\|WP_017457357.1\|620092_620362_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.31854e-53
NZ_CP012487.1\|WP_061493035.1\|631907_632345_+\|hypothetical-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	2.47226e-93
NZ_CP012487.1\|WP_061493037.1\|632970_633624_+\|hypothetical-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.12331e-61
NZ_CP012487.1\|WP_061493026.1\|622851_623736_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_CP012487.1\|WP_061493020.1\|611782_613129_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0

>NZ_CP012487.1|WP_061493026.1|622851_623736_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALHYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYIVERKLDEKQAKEALKQRFEKSDQEQWGWNIVEFYLGDISEATLMDRLKADATDNTSLAEHLSETNFYLGKYYLSLGDKDSATALFKLAVANNVHNFVEHRYALLELALLGQEHDDLAESDQQ
>NZ_CP012487.1|WP_061493025.1|620607_622743_+|polyribonucleotide-nucleotidyltransferase
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVSMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKASKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQNINELVKEAGKPRWDWQPEAVNEALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAIEKKVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQIIDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDAEKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPVKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGDKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQTQPAEAAEAPQAEQGE
>NZ_CP012487.1|WP_017457357.1|620092_620362_+|30S-ribosomal-protein-S15
MSLSVEAKAKIVSEFGRGSNDSGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_CP012487.1|WP_061493024.1|618997_619945_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDVHGVLLLDKQQGASSNDVLQKVKRLYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPLTFTAEQLAAALESFRGDTQQIPSMYSALKYQGKKLYEYARQGIDVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIVDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEQLRELVEQAEQQAIPAAQLLDPLLMPMDSPASDFPVVNIPSVVAAYFKNGQPVRTSAAPKEGLVRVTEGDEAKFIGMGEIDDEGRIAPRRLVVEYPAV
>NZ_CP012487.1|WP_061493023.1|618596_618998_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQELQKEIAIILQREIKDPRLGMMTTVSGVEVSRDLAYAKVFVTFLNDKDEASVKAGIKALHDASGFIRTLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTSVVKHDDERRVNPDDSKED
>NZ_CP012487.1|WP_061493022.1|615783_618495_+|translation-initiation-factor-IF-2
MTDVTVKTLAAEIQTSVDRLVQQFADAGIRKSSEDSVTAQEKQTLLAHLNREHGAGPDKLTLQRKTRSTLSIQGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEEAMREAEEKARREAQEAAEREAEEKAKRDAESRVKREAEEKAKREHAENAKREAAENSKVSNQQSDEMTRTAQAEKARRESEAQELKRKAEEEARRKLEENARRVAEEARRMAEQNENGWSAGSDEEETTGDYHVTTSQHARQAEDDNDREVEGGRGRGRTAKAARPKKGNKHAESKADREEARAAVRGGKGGRQRKGSSLQQGFQKPVQAVNRDVVIGETLTVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTAMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELTQYGIIPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGVVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRDELGREVSEAGPSIPVEILGLSGVPAAGDEATVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVMKADVQGSVEAIADSLLKLSTDEVKVKIVGSGVGGITETDATLAAASNAILVGFNVRADASARRVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRTGDMIEVFEIIEIQRTIE
>NZ_CP012487.1|WP_061493021.1|614271_615759_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRRWLVVEEVTQPTREITLEAARYEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVEDLQSKHQAEAHAAIDTFTRYLDIDEDFATVLVEEGFSTLEELAYVPIKELLEIDGLDEDTVEALRDRAKNALTTLALAQEESLSDKAPAEDLLNLEGLDRALAFKLAARGVCTLEDLAEQGVDDLSDIEGLTDEKAGELIMAARNICWFGDEA
>NZ_CP012487.1|WP_082794122.1|613751_614243_+|ribosome-maturation-factor-RimP
MGYTPFFYVLGVDLSTLEQKLTEMVTAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLERPLFTAAHYTRFKGEEVSLVLRMAVQNRRKWQGIIKDVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_CP012487.1|WP_061493020.1|611782_613129_-|argininosuccinate-synthase
MTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAKEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELKIYKPWLDTDFIDELGGRQEMSEFMTASGFDYKMSAEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDENVKIQAEEVTVRFERGHPVALNGKTFADDVELMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDPQALMLRDSLQRWVASAITGEVTLELRRGNDYSILNTVSDNLTYKAERLTMEKGESVFSPDDRIGQLTMRNLDITDTREKLFNYVQTGLLSANSGNGLPQVENLENSDKK
>NZ_CP012487.1|WP_061493019.1|611458_611665_+|hypothetical-protein
MVLFFLVTYGFRICISHLFFSSWLSASVKNEDLLFIAALILGQGHIVQTNTGLNEHRFSLLFSKEVVH
>NZ_CP012487.1|WP_061493028.1|625980_627225_+|tryptophan-permease
MSTLTTTQASPSLFGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSLLALVFTWFCMLHSGLMILEANLNYRSGASFDTITKDLLGKGWNLVNGVSIAFVLYILTYAYISASGSILHHTFSELSLNVPARLAGFCFALGVAFIVWLSTHAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLLNVAQSDTSYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIIRCLVYGTLLALGLYVIWLLVTMGNIPRPAFIDIAAKGGNIDVLVQALSGVLNSRSLDLLLVIFSNFAVASSFLGVTLGLFDYLADLFNVDDSPLGRFKTALLTFTPPIIGGVLWPNGFLYAIGYAGLAATIWAAIVPALLANASRKRFGSPIFRVWGGKPMIVLILLFGAGNAVVHLLSSFNLLPVYQ
>NZ_CP012487.1|WP_061493029.1|627273_628281_-|LLM-class-flavin-dependent-oxidoreductase
MADKTLPFSVLDLAPIPQHSSAREAFTHSLDLAKLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTQTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSERLEKPYAMVCINIVAADSNRDAEFLFTSMQQAFVKLRRGESAQLPPPIESMDQFWSPAEQYGVQQALSMSLVGDKAKVRHGLESILRETDADEIMVNGQIFDHQARLHSFELAMQVKEELLG
>NZ_CP012487.1|WP_061493030.1|628422_629301_-|U32-family-peptidase
MKYSLGPVLYYWSKETLEDFYHQAANSTADVIYLGEAVCSKRRATKVGDWLDMAKALATSGKQVVLSTLALVQASSELNELKRYVDNGEFLLEASDLGVVNMCADRKLPFVAGHALNCYNAVTLRLLLKQGMVRWCMPVELSRDWLINLLDQCDALGIRQQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRSMLSQENQQVFVLNGIQTMSGYVYNLGNELTSMNGIVDMVRLSPMGNDTFAMLDAFRRNETGAAPLPLASNSDCNGYWRRLPGLALQQ
>NZ_CP012487.1|WP_061493031.1|629308_630304_-|protease
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYSRWERAVDMAAQIGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELLAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCMASPQHFVPQPAWMDTLGAMSEGTQTTLGAYHRKWQ
>NZ_CP012487.1|WP_061493032.1|630542_631067_+|SCP2-domain-containing-protein
MLEKLRSHLVHFGPSLLSVPVKLTPFAIKRQVLEQVLRWQFQQALADGELEFLEGRWLSIQVRDIGLTWYTSVEDGRLIVRESADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKPLRVMLLQLAEFVEAGLQAPPATTQPSVGEPC
>NZ_CP012487.1|WP_061493033.1|631060_631564_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFGGEGEARLVHDLREDGLITLGFVATDDEGQVIGYVAFSPVTVEGEELQWVGLAPLAVDEQYRGQGIARQLVYEGLDSLNEFGYAAAVTLGDPAFYSRLGFENAAQHGLHCRWPDTEAAFLVHRLADDALHGVRGLVEYSEHFNRL
>NZ_CP012487.1|WP_061493034.1|631550_631853_-|GIY-YIG-nuclease-family-protein
MTPWFLYLIRTPDNTLYTGITTDVARRFTQHQNGKGAKALRGKGALQLVFSAQVGDKSIALRLEYRIKQLNKRQKERLVAGDGSFEALRESLLSSAVTGD
>NZ_CP012487.1|WP_061493035.1|631907_632345_+|hypothetical-protein
METLAAINRWLAKQHVVTWCVANRGELWCANAFYFYDPHAVAFYVLSEDQTRHGQMTGLKAQVAGTVNGQPKTVALIRGVQFAGEIRRLDEEESAAPRAQYNRRFPVARVLSAPMWEIRLNEVKFTDNTLGFGKKLHWVRESGAQ
>NZ_CP012487.1|WP_061493036.1|632330_632849_-|type-1-glutamine-amidotransferase
MSKKIAVLITDEFEDSEFTSPAQEFRKAGHEVITIEKQAGKTVHGKKGEADVVIDKAIDDVRPADFDALLLPGGHSPDYLRGDDRFVTFTRDFISAGKPVFAICHGPQLLISADVVRGRKLTAVKPIVVDVKNAGGEFYDQEVVIDNDQLVTSRTPDDLPAFNREALRLLGA
>NZ_CP012487.1|WP_061493037.1|632970_633624_+|hypothetical-protein
MQRILLTGATGLVGGHLLRLLINEPRITAIAAPTRRPLDDVAGVFNPHDPQLTDALAQVTEPVDTVFCCLGTTRREAGSKEAFIHADFTLVVDTAIAGLRLGAKQMLVVSAMGANARSPFFYNRVKGEMENALIAQEWPSLTIARPSMLLGDRQKTRVNESLLAPLFRFLPGNWKSIRAQDVALALLTLAFSPDNRGVQIIRSAQLSAIAAERTFAK

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Crispr_ID: NZ_CP012487_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012487_3

2856433-2856564

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012487_3

>merge|NZ_CP012487|3|2856433-2856564|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCACTGAGAAGGAATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP012487|3|2|2856433-2856564|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCACTGAGAAGGAATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012487.1\|WP_061495309.1\|2867495_2867840_+\|glutaredoxin	unknown	unknown	gnl\|CDD\|182759
NZ_CP012487.1\|WP_061495287.1\|2860577_2861777_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP012487.1\|WP_061495263.1\|2844374_2845391_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|182294
NZ_CP012487.1\|WP_061495275.1\|2849702_2856233_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|380184
NZ_CP012487.1\|WP_061495246.1\|2839129_2840617_+\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990
NZ_CP012487.1\|WP_061495278.1\|2856722_2858096_-\|multidrug-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP012487.1\|WP_061495293.1\|2862821_2863847_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP012487.1\|WP_007374746.1\|2845457_2845694_-\|murein-lipoprotein	unknown	unknown	gnl\|CDD\|185294
NZ_CP012487.1\|WP_061495300.1\|2864404_2865574_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP012487.1\|WP_061495269.1\|2848414_2849671_+\|autotransporter-strand-loop-strand-O-heptosyltransferase	unknown	unknown	gnl\|CDD\|275207
NZ_CP012487.1\|WP_061495266.1\|2846002_2847415_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP012487.1\|WP_061495306.1\|2866311_2867160_-\|peptidoglycan-endopeptidase	unknown	unknown	gnl\|CDD\|366353
NZ_CP012487.1\|WP_061495260.1\|2843858_2844275_+\|cysteine-desulfuration-protein-SufE	unknown	unknown	gnl\|CDD\|181767
NZ_CP012487.1\|WP_061495284.1\|2859131_2860280_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP012487.1\|WP_061495281.1\|2858415_2859060_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP012487.1\|WP_061495290.1\|2861890_2862802_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP012487.1\|WP_061495253.1\|2841355_2842627_+\|signal-peptide-peptidase-SppA	unknown	unknown	gnl\|CDD\|236804
NZ_CP012487.1\|WP_061495250.1\|2840634_2841381_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|181965
NZ_CP012487.1\|WP_061495303.1\|2865607_2866189_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP012487.1\|WP_061495256.1\|2842623_2843844_+\|cysteine-desulfurase-SufS	unknown	unknown	gnl\|CDD\|181766

Protein	Function_ID	Function_description	E-value
NZ_CP012487.1\|WP_061495309.1\|2867495_2867840_+\|glutaredoxin	gnl\|CDD\|182759	PRK10824, PRK10824, Grx4 family monothiol glutaredoxin.	2.8504e-81
NZ_CP012487.1\|WP_061495287.1\|2860577_2861777_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP012487.1\|WP_061495263.1\|2844374_2845391_+\|murein-L,D-transpeptidase	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	6.36407e-91
NZ_CP012487.1\|WP_061495275.1\|2849702_2856233_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|380184	NF033177, auto_Ag43, autotransporter adhesin Ag43. Members of this family, restricted to Escherichia coli (including E. coli K-12) are the autotransporter adhesin Ag43 (antigen 43), also known as flu. The C-terminal region forms an outer membrane beta-barrel autotransporter domain, which enables type V secretion (autotransport).	7.62289e-115
NZ_CP012487.1\|WP_061495246.1\|2839129_2840617_+\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0
NZ_CP012487.1\|WP_061495278.1\|2856722_2858096_-\|multidrug-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP012487.1\|WP_061495293.1\|2862821_2863847_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP012487.1\|WP_007374746.1\|2845457_2845694_-\|murein-lipoprotein	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	3.07419e-39
NZ_CP012487.1\|WP_061495300.1\|2864404_2865574_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.01371e-97
NZ_CP012487.1\|WP_061495269.1\|2848414_2849671_+\|autotransporter-strand-loop-strand-O-heptosyltransferase	gnl\|CDD\|275207	TIGR04414, glycosyltransferase_tibC, autotransporter strand-loop-strand O-heptosyltransferase. Both Aah (autotransporter adhesin heptosyltransferase) and TibC (tib is enterotoxigenic invasion locus B) are protein O-heptosyltransferases that act on multiple sites from repeat regions of proteins exported by autotransporters. Aah glycosylates AIDA, or autotransporter adhesin involved in diffuse adherence, TibC acts on TibA, but TibC can replace Aah. [Protein fate, Protein modification and repair].	0
NZ_CP012487.1\|WP_061495266.1\|2846002_2847415_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP012487.1\|WP_061495306.1\|2866311_2867160_-\|peptidoglycan-endopeptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.37053e-42
NZ_CP012487.1\|WP_061495260.1\|2843858_2844275_+\|cysteine-desulfuration-protein-SufE	gnl\|CDD\|181767	PRK09296, PRK09296, cysteine desulfuration protein SufE.	1.64889e-102
NZ_CP012487.1\|WP_061495284.1\|2859131_2860280_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP012487.1\|WP_061495281.1\|2858415_2859060_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.10301e-123
NZ_CP012487.1\|WP_061495290.1\|2861890_2862802_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP012487.1\|WP_061495253.1\|2841355_2842627_+\|signal-peptide-peptidase-SppA	gnl\|CDD\|236804	PRK10948, PRK10948, Fe-S cluster assembly protein SufD.	0
NZ_CP012487.1\|WP_061495250.1\|2840634_2841381_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|181965	PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.	0
NZ_CP012487.1\|WP_061495303.1\|2865607_2866189_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	6.84496e-135
NZ_CP012487.1\|WP_061495256.1\|2842623_2843844_+\|cysteine-desulfurase-SufS	gnl\|CDD\|181766	PRK09295, PRK09295, cysteine desulfurase SufS.	0

>NZ_CP012487.1|WP_061495275.1|2849702_2856233_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MKKSLNCSYRLVWNDIQRAFVVVSELTRAKGKRASGAVLISAAVGGMFASCGAMAFTPDVTGSTRDEVVQEGVQNVRTGGLATNHTIGNRGTQIVAGGQTVDTHVQNGGSQIVRQNGQTTGTVITDGAQIVEVDGTATGSQLNSGGKQAVAGRANGTIVGAGGVQTVLQSGVASQTIINNGGVQAVNGNSAQGVINAGGIQLINSGGFSQDATVNSGGVQHVNVGGSAADTAIFGGGKQVVAGTVSGAHLNDGGAQLVQQTGKATGTIINNRGTQTVDGTAISAVVNDGGTQLVHSGALAAGTAVNSGGVQHINQGGAASDGVVFGGGTQVVAGTASGTSVNDGGAQLVQKTGKSTGTIINNRGTQTVDGQAISSIVNAGGTQQINRGGLATGGVVNTGGLQHISEGGAASDAILLGGTQLVEGTASGTVINNGGLQQIHASGMSSDAVVNASGEQDVDGVSFSAEVNDGGLQKVRSGGAASSAVINSGGIQNVLSGGATAFTTLLGGIQQLAGVAADTIIGAGGVQHVQVGGSATGSLINDGGLQRVDGTATSSVIYNGGTQLVNRGGLADNATVNSGGLQHINEGGAASDTTVFGGGRQVVAGTASGTSINDGAYQLVQATGKATDTIINSGGTQAVDGTAISAVVNDSGVQLIHSGALATGSLVNSGGLQHINEGGAASDALLFGGTQIVEGTASNTRVDSGGVQQVHVTGKTTDSKIYDGGFQDVDGTANGTIVYTGGKQVIRSGGHANNTRVDKDGVQIVRANGAASKTTLLGGTQQVAGLADDTVIGDGGIQHVQVGGLATGSLINSGGLQRVDGSATSAVVNNGGVQLVNRGGLAAGSIINSGGLQHINLGGAASDGTIFGGGKQLVAGTASGTSISDGGLQIVQATGKTTNTIINSGGVQSVDGDSTSSVVRNGGTQLVNKGGLATDTTVNSGGLQHINLGGSAAGGTIFGGGKQVVAGTASGTSLNDGAYQIVTTSGKAVGTLINSGGVQSVDGNATSAVVRNGGTQLVNKGGLAAGTTVNSGGVQHISLGGAASDGTVFGGGTQLVEGSASGTSISDGGVQLVTKSGQASGTLINSGGVQRVDGQSFDAVINNGGLQIVDPYGWSRQSVINAGGTQILSNAAVAISTVLNGGEQHINNGAKSFAARLLGGTQNIGSGGQAFETRVEKGGVQNVNSGGYTYGGTISTGGRQNVASGGVTDFTFIDGGLQVVDGTSIVSIVKNGGRQVINKNANAEVSVVIDGGIQEVFGTTTGSEITNAEQRIYDGGAATSTVLSDGAVQGIYDGAVVTDTRNRNSIQNLYSGGRAENTLMDNFAVQNIAAGATAVKTSMINSSQQNVRGSAVDTELSANGVQNIYRGGTATRTTLYERGIQNIYSGGSSVLAVIQAGGIQNVLNGGTSISTTINDGGTQNVSSGGTVISTIIREGGIQNVNDGAIVIDNMVVGDQVVNQGGTVASSTVSENGTQSVSFGGTAIATTVSKGGAQFVRAGGVADLTAIERGGILALEDGATVTNINLNSGAALMAGTDTSLTGTNALGSFSIANSVAENVLLENGGLLLVAADGTANNTVVSENGTLSVAEGGMLTGVTQVNDGATLAGSVNNSGELHITTDTSNNTINAAISGNGTLYKEGDNTLTLSGVLDQSGGTYLQSGTLVFSGLDAVTDIIAQRGTSLQLTNGTSLTGMIDPTDLTIDAGSNWLMTANSLLNNLTLGGSIDFQAPTGTFVPKTLTVTNLVGNGGTITLNTLFNGNTAVSDSLVLDGGTATGNTQIAIRSQGGLGARTTGNGIQVVNAINGATTTDDAFSLSGSLQAGAYNYTLQQGSADQSWYLTTADAGSNENGPQNYRSAMYLYNSIYAQAMDYDSALLGSLDARRYAARTAAESGSNMWARFQAGQMSHDHGSNDLRSGNTPDSKGGYTFLQIGSDLWQGSASTMEWTVGVYGAAGLSAVDVQRNNKSKAGTVRDDAYSGGLYLNGVHESGWWMDVVAQGTRHNFDTNPRDGDGLKTHGWGYLGSFETGLPFEIGGGLVLEPQVQYQYRGVNLKEGNDDVANVQFGDGHSQQVRAGLRLGNNATLKETGKPVPVSWWVRPSFIQTFDSKGTLNVNAPGVAGSEVAFNPDQDGTAAALDVGIDGQIRDNVTLGVRAGYTRSINDAGTGGYGGQITLKVGF
>NZ_CP012487.1|WP_061495269.1|2848414_2849671_+|autotransporter-strand-loop-strand-O-heptosyltransferase
MTTSAVVGHGYAFISPPEFPTQQGPMGILYDFNDGARLLLPPGNWRVEISDEETGNILFSDDVAQGWVISTKKYYVRFRLRVWDGVQSEPVLDHVLDMHGKKVLVSFPCGTLGDLIGWVPYAERFRQTYQCNVDCTMAQPIVDLFKPVYPQLNCFTPEAWQTGPGVSEPPYASWRVGLFFHGDLNKQPFDFRAVGLHRSAGHILGVDPTEIVPDLRQRSSRRIAEPYVCIATQSTSQAKFWNNGSGWHEVIDYLKEQGYRVLCIDKERVVGRGYIWNKIPHGAEDFTGNLPLADRVALLEHAEFFIGLGSGLSWLAWGCRIPVVLISGFSLPNSEFHTPWRVINTHVCNGCWDDVRFNFDHQDYFWCPRHKGTERQYECTRFITGKQVIGHLRRLIALQSDPFGIKTTAFADPDQHAA
>NZ_CP012487.1|WP_061495266.1|2846002_2847415_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTGKKAAILLDTKGPEIRTIKLEGGNDVSLKAGQTFTFTTDKSVVGNADTVAVTYEGFTTDLNVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVVEIREHLKAHGGEHIQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVTIMATICERTDRVMTSRLDFNNDSRKLRITEAVCRGAVETAEKLEAPLIVVATQGGKSARAVRKYFPDATILALTTNEVTARQLVLSKGVVAQLVKEISSTDDFYRLGKEVALESGLAAKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP012487.1|WP_007374746.1|2845457_2845694_-|murein-lipoprotein
MNRTKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAIRSDVQAAKDDAARANQRLDNQAHSYRK
>NZ_CP012487.1|WP_061495263.1|2844374_2845391_+|murein-L,D-transpeptidase
MKRASLLSLCLFGAFSAIQLAHAAEYVLPPDGSRLIGENQTWTVRAEDKNLQAIARHFDTAAMLILEANDTIAPVPRPGTVVTIPSQMLLPDTPREGIVVNLAELRLYYFPPGKNSVQVYPIGIGQQGLETPVSVTRVSQKIPNPTWTPTVGIRARSLANGIELPPVVPAGPHNPLGRFALRLGIGHGEYLIHGTNAPDSVGLRVSSGCMRMSAPDIQALFAQVSAGTRVTIINEPVKYAVEPDGRHYIEVHRPLSQTVEEDTQRVPIQLSPALATFINQSGGDKKLIEKALNRRAGYPVAVASGKSAAVNPESVLSVQNSAEAAAMNTETGQRAITQ
>NZ_CP012487.1|WP_061495260.1|2843858_2844275_+|cysteine-desulfuration-protein-SufE
MAALPDKEKLLRNFNRCANWEEKYLYIIELGQRLPDLSEEAHNPDNIIQGCQSQVWIVMQRNDAGVIELSGDSDAAIVKGLIAIVFVLYQQMTAQDIVAFDVRPWFEQLSLTQHLTPSRSQGLEAMIRAIRNKAANIS
>NZ_CP012487.1|WP_061495256.1|2842623_2843844_+|cysteine-desulfurase-SufS
MSFPVNAVRADFPVLLREVNGLPLAYLDSAASAQKPNQVIDAEAAFFRHGYAAVHRGIHTLSAEATQRMENVRVQAAAFLNARLPEELVFVRGTTEGINLVANSWGNSQVHAGDNIVISAMEHHANIVPWQMLCERVGAQLRVIPLNQDGTLQLDVLPTLFDERTRLLAITQVSNVLGTENPVAEMITLAHQHGAKVLVDGAQAVMHHSVDVQALDCDFYVFSGHKLYGPTGIGVLYVKEAILQDMPPWEGGGSMIATVSLTEGTTYAKAPWRFEAGTPNTGGIIGLGAAIDYVTRLGLDAIGEYEQTLMRYALTALAEVPDLTLYGPAQRQGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAFYKVPAMCRASLVMYNTEEEVDRLVAGLKRIHQLLG
>NZ_CP012487.1|WP_061495253.1|2841355_2842627_+|signal-peptide-peptidase-SppA
MAGLQNSSNALQQWHHLFEKQGGARSDAAQQHLQQMLRLGLPTRKQENWKYTPLDGLLSSQFVVAAGTVSEQQRDALALPVDAVRLVFVNGIFNAALSDDTAGSGFDVTFNDARQQLPAPVQPEIFLHLTESLAQSVTWIQVAKDLRPSKPLLLMHITQGVAGDEMNTAHYRHHLSLAQGAEATIYEHYVSLNDNPHFTGSRLTMSVAANARLHHVKLAFENPASYHFAHNDIWLADNGSAKSHSFLLGGAVLRHNTSTQLNGENTQLNINSLAMPVKSEVCDTRTWLEHNKGYCHSRQLHKTIVSDKGRAVFNGLIKVAQHSIKTDGQMTNNNLLLGRLAEVDTKPQLEIYADDVKCSHGATIGRIDDEQMFYLRSRGINQQAAQKMIIHAFAAELTEAINDEALKHQVLAQISQRLAGGVA
>NZ_CP012487.1|WP_061495250.1|2840634_2841381_+|Fe-S-cluster-assembly-ATPase-SufC
MLSIKDLQVSVDDKAILRGLSLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVVGGSVEFKGKDLLELSPEDRAGEGVFMAFQYPVEIPGVSNQFFLQTALNAVREYRGEDALDRFDFQDLMEEKIKLLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPDLCILDETDSGLDIDALKIVADGVNALRDEKRAFIIVTHYQRILDYIKPDFVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ
>NZ_CP012487.1|WP_061495246.1|2839129_2840617_+|Fe-S-cluster-assembly-protein-SufB
MSRNTEATDDVKIWTGGNLNYKEGFFTRLSTDELAKGINEDVVRAISAKRNEPEWMLEFRLNAYHAWLEMEEPHWLKAHYDKLDYQDYSYYSAPSCGNCDDTCASQPGAVQQTGTNAWLTEEVEEAFNQLGVPVREGKEVAVDAIFDSVSVATTYREKLSEQGIIFCSFGEAIHDHPELVKKYLGTVVPSNDNFFAALNAAVASDGTFIYIPKGVRCPMELSTYFRINAEKTGQFERTILVADEGSYVSYIEGCSAPVRDSYQLHAAVVEVIIHRDAEVKYSTVQNWFPGDNNTGGILNFVTKRALCEGDNSKMSWTQSETGSAITWKYPSCILRGDNSIGEFFSVALTSGHQQADTGTKMIHIGKNTKSTIISKGISAGHSQNSYRGLVKIMPTATNARNFTQCDSMLIGPDSGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQRGISEDDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG
>NZ_CP012487.1|WP_061495278.1|2856722_2858096_-|multidrug-transporter-MdtK
MQKYVTEARQLLALALPVIVAQVAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWFPAILFGHGLLLAMTPVIAQLNGSGRRDRIAHQVGQGFWLAGIVAVLIMIVLWNAGHIIHAMHNIDPILAEKAVRFLRALMWGAPGYLFFQVMRNQCEGLARTQPGMVMGFVGLLVNIPVNYIFIYGHFGMPELGGVGCGVATASVYWVMFICMRMYVKRARVMRDIQHAQRFAKPDFEVLKRLAQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGFRLGQGSTLDAKTSAHTGLIVGVCMAAVTAVFTVLMREQIALLYNKNPEVVTLASHLMLLAAIYQISDSIQVIGSGILRGYKDTRSIFFITFTAYWVLGLPSGYILALTDLVVERMGPAGFWMGFIIGLTSAAILIMLRMRYLQRLPSATILQRAAR
>NZ_CP012487.1|WP_061495281.1|2858415_2859060_+|riboflavin-synthase
MFTGIVQGTAKLVSIDDKPNFRTHVVELPEHMLDGIETGASIANNGCCLTVTAIDGSRISFDLMKETLRITNLGELGVGDEVNVERAAKFSDEIGGHLMSGHIMTTAEIVKILTSENNRQIWFKVSDPTLMKYILYKGFIGIDGISLTVGEVTSSRFCVHLIPETLQRTTLGAKKLGHRVNIEIDPQTQAVVDTVERVLAAKEAAAVAAMISEE
>NZ_CP012487.1|WP_061495284.1|2859131_2860280_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVRDDNWFRIANELLSRAGIQVNGPAASDIQVKNPDFFKRVLQEGSLGLGESYMDGWWDCDRLDIFFTKVLRAGLENQLPHHLKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFTRMLDPQMQYSCAYWKEADTLEDAQLAKLRLCCEKLQLRPGMRVLDIGCGWGGLAQFMAQNYGVSVVGVTISAEQQKLAQQRCEGLDVEIRLQDYRDMNDQFDRIVSVGMFEHVGPKNYATYFSVVDRNLKPDGIFLLHTIGSKRTDHNVDPWIDRYIFPNGCLPSVRQIADASEAHFVLEDWHNFGADYDRTLMAWYARFLDAWPEIADNYSERFKRMFSYYLNACAGAFRARDIQLWQVVFSRGIERGLRVAR
>NZ_CP012487.1|WP_061495287.1|2860577_2861777_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKGFLVWLAGLSVLGFLATDMYLPAFSAIQQDLETSSAVVSATLSLFLAGFAVAQLLWGPLSDRYGRKPILLTGLGIFAVGCLGTVWVRDATLLLVLRFVQAVGVCAATVSWQALVTDYYPSHRVNRIFATIMPLVGLTPALAPLLGAWILAHLGWQAIFATLLVITLVLMIPALRLKSSAEATAPDEQSLTFMDLLRARDYRGNVIIYAACSASFFAWLTGSPFILHEMGYGPSAIGLSYVPQTIAFLVGGYGCRAALQKWQGEQLLPWLLSAFALSVMTTWAVGFMPNVSLTALLIPFCVMAMANGAIYPIVVAQALRPFPQATGRAAALQNTLQLGLCFLASLVVSWLIATPLLTTTSVMLSMVLLATLGYRLQRQPHRRYAKEATTTASSRG
>NZ_CP012487.1|WP_061495290.1|2861890_2862802_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSGAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTPAGVWFLKEGRSVIKKMQVTRQQCQQIANGWRGQLAIAVDNIVRPERTRQLIVDFYRHFSDVELQVYQEVFNGVWDALADGRVELAIGATQAIPVGGRYAFRDMGMLSWKCVVSCRHPLAALPGPLSDETLRNWPSLIQEDTSRSLPKRITWLLDNQKRVIVPDWKSSEACLSAGLCVGMVPAHFARPWLDRGEWVALELENPFPDAACCLTWQQNEASPALNWLLEYLGDSETLNREWLREPE
>NZ_CP012487.1|WP_061495293.1|2862821_2863847_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKKCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPESLLSMLEEYRHIPMVVMDWGEAKADFTDTVIDNAFEGGYMAGRYLIERGHRDIGVIPGPLERNTGAGRLAGFMKAMEEATISVPESWIVQGDFEPESGYRAMQQILAQTHRPTAVFCGGDIMAMGALCAADEMGLRVPQDISVIGYDNVRNSRFFTPSLTTIHQPKDSLGETAFTMLLDRIVNKREESQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP012487.1|WP_061495300.1|2864404_2865574_+|MFS-transporter
MKMNFPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRGRRNALIFLMAIFTLGNVLSAIAPNYATLMLARIVTSLNHGAFFGLGSVVAASVVAKEKQASAVATMFMGLTIANIGGVPAATWLGETIGWRMSFMATAALGIVAMLSLFFSLPKGGTGERPEVRKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLRTITDATPVFITAMLVLIGVGFSIGNYLGGKLADRSVTGTLKGFLVLLIAIMLAIPFLAQSAIGAAISMVVWGAATFAVVPPLQMRVMRVAHEAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYSFVPVMGAIIAGLGLLVVLSSGRTQPERACTAAE
>NZ_CP012487.1|WP_061495303.1|2865607_2866189_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETLDYHYGKHHQAYVTNLNNLIKGTAFEGKSLEAIVKSSEGGVFNNAAQVWNHTFYWHCLAPNAGGEPTGALASAIAKSFGSFAEFKAQFTDAAVKNFGAGWTWLVKKADGELAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPNYLEHFWALVNWDFVAKNLAA
>NZ_CP012487.1|WP_061495306.1|2866311_2867160_-|peptidoglycan-endopeptidase
MARIPKSSITLCALLFTTLSFTPLANASEQARASAVQKSHLAKASERKKKTTSQKTSKKNSRNAETKTTNKITNKKTTETKKSPATKKVTTSSKASQLSTRRNKSSQTKTAAVTWTEKCTPRKGHKPHCVKVKSTKTAALADVHKVRIQKAQKTAMSKLMNQIGKPYHWGGTSPNTGFDCSGLVYYAYKDLVKFRIPRTANEMYHLRDASPVNVAELESGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRSGQDIQVTSLSEDYWQRHYVGARRVVTPKTIR
>NZ_CP012487.1|WP_061495309.1|2867495_2867840_+|glutaredoxin
MSTTLEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVEGELVGGCDILIEMYQRGELQTLIKEAAAKHKGEQGAE

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Crispr_ID: NZ_CP012487_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012487_4

5043615-5043715

Orphan

Consensus_repeat	Method
TTTAGCGGAAGGCGCTTCCATAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012487_4

>merge|NZ_CP012487|4|5043615-5043715|CRISPRCasFinder
TTTAGCGGAAGGCGCTTCCATAACAATCAACGGTTTTGGCGCTTATGGGGTGTACGCCATCAATTCAATCGTCAATTTAGCGGAAGACGCTTCCATAACAA

>NZ_CP012487|4|3|5043615-5043715|CRISPRCasFinder
TTTAGCGGAAGGCGCTTCCATAACAA	TCAACGGTTTTGGCGCTTATGGGGTGTACGCCATCAATTCAATCGTCAA
TTTAGCGGAAGACGCTTCCATAACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012487.1\|WP_061499478.1\|5036745_5037657_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NZ_CP012487.1\|WP_061499512.1\|5047816_5049226_+\|glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP012487.1\|WP_061499489.1\|5039050_5039488_-\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_CP012487.1\|WP_061499486.1\|5038064_5039006_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|370533
NZ_CP012487.1\|WP_061499499.1\|5041043_5041508_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012487.1\|WP_061499522.1\|5053817_5054321_-\|Der-GTPase-activating-protein-YihI	unknown	unknown	gnl\|CDD\|235370
NZ_CP012487.1\|WP_061499470.1\|5035016_5035652_+\|formate-dehydrogenase-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|182608
NZ_CP012487.1\|WP_061499515.1\|5049492_5050542_+\|nitrogen-regulation-protein-NR(II)	unknown	unknown	gnl\|CDD\|182947
NZ_CP012487.1\|WP_061499518.1\|5052257_5053631_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
NZ_CP012487.1\|WP_061499535.1\|5059957_5060581_-\|thiol:disulfide-interchange-protein-DsbA	unknown	unknown	gnl\|CDD\|182863
NZ_CP012487.1\|WP_061499532.1\|5059035_5059944_+\|acyltransferase	unknown	unknown	gnl\|CDD\|237584
NZ_CP012487.1\|WP_061499476.1\|5035648_5036578_+\|formate-dehydrogenase-accessory-protein-FdhE	unknown	unknown	gnl\|CDD\|179595
NZ_CP012487.1\|WP_061499526.1\|5054878_5055520_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP012487.1\|WP_061499493.1\|5039484_5040357_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|179313
NZ_CP012487.1\|WP_061499509.1\|5045612_5047436_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP012487.1\|WP_061499482.1\|5037679_5038018_+\|steroid-delta-isomerase	unknown	unknown	gnl\|CDD\|226913
NZ_CP012487.1\|WP_061499502.1\|5041504_5042275_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226233
NZ_CP012487.1\|WP_061499529.1\|5055825_5058612_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP012487.1\|WP_061500261.1\|5050550_5051960_+\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|182842
NZ_CP012487.1\|WP_061499496.1\|5040350_5040950_-\|glucose-1-phosphatase	unknown	unknown	gnl\|CDD\|181872

Protein	Function_ID	Function_description	E-value
NZ_CP012487.1\|WP_061499478.1\|5036745_5037657_+\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	3.39036e-81
NZ_CP012487.1\|WP_061499512.1\|5047816_5049226_+\|glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP012487.1\|WP_061499489.1\|5039050_5039488_-\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	1.23637e-94
NZ_CP012487.1\|WP_061499486.1\|5038064_5039006_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|370533	pfam09500, YiiD_C, Putative thioesterase (yiiD_Cterm). This entry consists of a broadly distributed uncharacterized domain often found as a standalone protein. The member from Shewanella oneidensis is described from crystallography work as a putative thioesterase because it belongs to the HotDog clan of enzymes. About half of the members of this family are fused to an Acetyltransf_1 domain pfam00583.	1.22612e-61
NZ_CP012487.1\|WP_061499522.1\|5053817_5054321_-\|Der-GTPase-activating-protein-YihI	gnl\|CDD\|235370	PRK05244, PRK05244, Der GTPase-activating protein YihI.	2.51791e-64
NZ_CP012487.1\|WP_061499470.1\|5035016_5035652_+\|formate-dehydrogenase-cytochrome-b556-subunit	gnl\|CDD\|182608	PRK10639, PRK10639, formate dehydrogenase cytochrome b556 subunit.	8.50466e-147
NZ_CP012487.1\|WP_061499515.1\|5049492_5050542_+\|nitrogen-regulation-protein-NR(II)	gnl\|CDD\|182947	PRK11073, glnL, nitrogen regulation protein NR(II).	0
NZ_CP012487.1\|WP_061499518.1\|5052257_5053631_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
NZ_CP012487.1\|WP_061499535.1\|5059957_5060581_-\|thiol:disulfide-interchange-protein-DsbA	gnl\|CDD\|182863	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA.	5.22167e-147
NZ_CP012487.1\|WP_061499532.1\|5059035_5059944_+\|acyltransferase	gnl\|CDD\|237584	PRK14014, PRK14014, putative acyltransferase; Provisional.	0
NZ_CP012487.1\|WP_061499476.1\|5035648_5036578_+\|formate-dehydrogenase-accessory-protein-FdhE	gnl\|CDD\|179595	PRK03564, PRK03564, formate dehydrogenase accessory protein FdhE; Provisional.	0
NZ_CP012487.1\|WP_061499526.1\|5054878_5055520_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	3.31514e-119
NZ_CP012487.1\|WP_061499493.1\|5039484_5040357_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|179313	PRK01637, PRK01637, virulence factor BrkB family protein.	2.38853e-173
NZ_CP012487.1\|WP_061499509.1\|5045612_5047436_-\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP012487.1\|WP_061499482.1\|5037679_5038018_+\|steroid-delta-isomerase	gnl\|CDD\|226913	COG4538, COG4538, Uncharacterized conserved protein [Function unknown].	8.07951e-20
NZ_CP012487.1\|WP_061499502.1\|5041504_5042275_-\|transcriptional-regulator	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	4.75531e-16
NZ_CP012487.1\|WP_061499529.1\|5055825_5058612_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP012487.1\|WP_061500261.1\|5050550_5051960_+\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|182842	PRK10923, glnG, nitrogen regulation protein NR(I); Provisional.	0
NZ_CP012487.1\|WP_061499496.1\|5040350_5040950_-\|glucose-1-phosphatase	gnl\|CDD\|181872	PRK09456, PRK09456, ?-D-glucose-1-phosphatase; Provisional.	1.39983e-153

>NZ_CP012487.1|WP_061499502.1|5041504_5042275_-|transcriptional-regulator
MYLINNLVEFNPDSKSLTNRLTGRTLHLQLPASLCFLYLITHPGEVISQNDLMKVGWGDRNDVTTPNAFYQAILTLRNALEVAGLPRDVVKTISRRGLTLSNTVSVEVLNTPQTVAIHTVPQPVVQISEPVPVISAKKNYSRWLIASVVILVLLSIINGWMLYNAHLPMPFKDYLTLNTTPSSGNDCRIFYAANERTTEYYTNLLNKNTELCANNDYLFLTGYSQADRIVAFACDKDARVDRTAFCSSHYFWTREQ
>NZ_CP012487.1|WP_061499499.1|5041043_5041508_-|hypothetical-protein
MKKNLSMMILSVALLTAVITSGVLLYSHLTAPPLQCVGTAEWHIGQNRFVGTLSFRMSHGKGMAVMTGKLFGQHVSEVNRSIYFHYSQQLRSRVLSNDRIVKTFADTADEADIKDTLPGFYRTPERSLSLIIEEYAGAYLFSTSNVPSLYCRKT
>NZ_CP012487.1|WP_061499496.1|5040350_5040950_-|glucose-1-phosphatase
MLYIFDLGNVIVDIDFNRVLGAWSDFSRVPLATLKQSFNMGETFHQHERGEISDEDFAKAMCEEMALPLSYEQFSTGWQAVFVALRPEVIEIMHKLRAQGHRVVVLSNTNRLHTTYWPEQYPEIRAAADHIYLSQDMGMRKPEARIYQQVLALEGFSADDAVFFDDNSDNIAGANQLGITSILVTGKATIPDYFAKQLC
>NZ_CP012487.1|WP_061499493.1|5039484_5040357_-|YihY/virulence-factor-BrkB-family-protein
MLRNARHKAKHHTRPLWSWLKLLWQRIDEDHMTTLAGNLAYVSLLSLVPFIAVVFALFAAFPMFSDVSLQLRHFIFANFIPTTGDVIQNYIEQFVANSSKMTAVGACGLVITSLLLMYSIDSALNAIWRSTRVRPHVYSFAVYWMILTLGPLLAGASLAISSYLLSLRWASELNSVIDNVLRIFPLVLSWLSFWLLYSIVPTTRVPNRDAIVGAFVAAVLFELGKKCFALYIAMFPSYQLIYGVLAVIPILFLWVYWTWCIVLLGAEITVTLGEYRKLKKAAQQEEANQP
>NZ_CP012487.1|WP_061499489.1|5039050_5039488_-|D-tyrosyl-tRNA(Tyr)-deacylase
MIALIQRVSRASVSVAGEVTGEIGPGLLVLLGVEKDDDEQKANRLCERVLGYRIFGDAEGKMNLNVQQAGGSVLVVSQFTLAAETERGMRPGFSRGAAPEKAQALYDYFVERCRSQQMVTQTGRFAADMQVSLVNDGPVTFWLQV
>NZ_CP012487.1|WP_061499486.1|5038064_5039006_-|GNAT-family-N-acetyltransferase
MYHLRVPQTEEELENYYHFRWEMLRKPLHQPKGSERDAWDAMAHHQMVVDEEGNLVAVGRLYINADNEGSIRFMAVHPSVQDKGLGTLMAMTLESVARQEGVKRVTCSAREDAVAFFAKLGFVNEGEITAPQTTPVRHFLMIKPVATLDDILHRGDWCGQLQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPEIGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRERHLGGTIILADAHIRYSTPITGKPSAIADLGSLSGDLDRLARGRKARVQLQVELFGDDKQGAIFEGIYIVLPAKPFGSYIEGGNEEE
>NZ_CP012487.1|WP_061499482.1|5037679_5038018_+|steroid-delta-isomerase
MSVVTPVEKQFTAYNAHDIDAFAACFSENFTAWRMPSDEPALRGREALRHFYAQHRFNNPALRAELLSRTVMGNKVFDHEKIYGMGDAVIENMAVYEVQDGCIKNAWFFFAG
>NZ_CP012487.1|WP_061499478.1|5036745_5037657_+|alpha/beta-hydrolase
MALEKGIASLVSDFIAAGRPSARAKSIDERRASYIASTVLAGETETRVQVADTTLDGITLRVFSPLDASESLPALIYYHGGCFISGGFATHDNQLRQLAYYSGCRVIAVQYRLAPEHPWPAAHDDAQKGADVVWKNAEALNINREKITLAGDSAGGHLALVTALRLKAAGNWLPAQLILIYPMLDATAYFDSYTFNGIDYVITRDALLSGYDMYLGDTDRLQADVSPLWRDDFKGLPPVHIITAEFDPLCDEGEALYKHMTEQGVTCTGVRYQGVIHGFFQLAGISQAAKDVIRDVAARVARA
>NZ_CP012487.1|WP_061499476.1|5035648_5036578_+|formate-dehydrogenase-accessory-protein-FdhE
MSIRIIPQDALEKSDKRTAEVIPPLLFPRLKNLYNRRAERLRELAESNPLGDYLRFAALIAHAQEVVLYDHPLQMDLTARIKEAAEQGKPPLDIHVLPRDAHWHKLLHSLIAELKPEMSGPALAVIENLEKASAQELEAMASALFAADFASVSSDKAPFIWAALSLYWSQMATLIPGKARAEYGEQRQFCPVCGSMPVSSVVHIGTTQGLRYLHCNLCETEWHVVRVKCSNCEQTRDLHYWSLDNEQAAIKAESCGDCGTYLKILYQEKDPNVEPVADDLASLVLDARMEQEGFARSSINPFLFPGEGE
>NZ_CP012487.1|WP_061499470.1|5035016_5035652_+|formate-dehydrogenase-cytochrome-b556-subunit
MKKRDTIVRYTAPERINHWVTAFCFVLAAVSGLGFFFPSFNWLMGILGTPQLARILHPFVGVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVGDTGRYNFGQKCVFWAAIIFLVLLLVSGVVIWRPYFAPAFPIPVIRIALMVHSFAAVALIVVIMVHIYAALWVKGTITAMVEGWVTSSWAKKHHPRWYREVRKTTEKSTE
>NZ_CP012487.1|WP_061499509.1|5045612_5047436_-|translational-GTPase-TypA
MIENLRNIAIIAHVDHGKTTLVDKLLQQSGTFDERAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGMDHEDMAEDMTPLYQAIVDHVPAPNVDLDGTLQMQISQLDYNNYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNGKVGKVLTHLGLERIDSEVAEAGDIIAITGLGELNISDTICDPQNVEALPALSVDEPTVTMFFNVNTSPFCGKEGKYVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFEMAVSRPKVIFREIDGRKQEPFENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRNNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEATVLVPPVKMTLEQALEFIDDDELVEVTPQSIRIRKRYLTENDRKRAMRGAKEE
>NZ_CP012487.1|WP_061499512.1|5047816_5049226_+|glutamate--ammonia-ligase
MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNADFFEEGKMFDGSSIGGWKGINESDMVLMPDATTAVIDPFYEEPTLIIRCDILEPGTMQGYDRDPRSIAKRAEEYLRATGIADTVLFGPEPEFFLFDDVRFGSSISGSSVAIDDIEGAWNSSTKYEGGNKGHRPAVKGGYFPVPPVDSAQDLRSTMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLSKNGTNLFSGDKYAGLSETALYYIGGVIKHAKAINALSNPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNLYDLPAEEAKEIPQVAGSLEEALNALSADREFLTAGGVFTDDAIDAYIALRTEENDRVRMTPHPVEFELYYSV
>NZ_CP012487.1|WP_061499515.1|5049492_5050542_+|nitrogen-regulation-protein-NR(II)
MASGVLPDAGQILNSLINSILLVDDELAVHYANPAAQQLLAQSSRKLFGTPLPELLSYFSLNIDLMRESLHAGQGFTDNEVTLVIDGRSHILSLTAQRLPEGLILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALLEYTKVIIEQADRLRNLVDRLLGPQQPGMHVTESIHKVAERVVNLVSMELPDNVTLVRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGVRYRLAARIDVEDNGPGIPSHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPIRK
>NZ_CP012487.1|WP_061500261.1|5050550_5051960_+|nitrogen-regulation-protein-NR(I)
MQRGIVWIVDDDSSIRWVLERALTGAGLSCTTFESANEVLDALTTKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQASGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRVKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTVRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLELRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVETKQLHPETEAALTRLPWGGNVRQLENTCRWLTVMAAGQEVLIQDLPAELFETTAPDNPSQSLPDSWATLLAQWADRALRSGHQNLLSEAQPEMERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME
>NZ_CP012487.1|WP_061499518.1|5052257_5053631_-|oxygen-independent-coproporphyrinogen-III-oxidase
MSEHVIDWDLALIQKYNYSGPRYTSYPTALEFSDAYGEEDFQRAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEHEIVHRAPLFKGRHVSQLHWGGGTPTYLNKAQITRLMGLLRGHFAFNDDAEISIEVDPREIELDVLDHLRSEGFNRLSMGVQDFNKEVQRLVNREQDEDFIFALLNHARKIGFTSTNIDLIYGLPKQTPESFAFTLQRVAALSPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQQTITSLTTSGYQFIGMDHFARPDDELAVAQRNGVLHRNFQGYTTQGDSDLLGLGVSAISMIGDSYAQNQKELKHYYQQVDERGNALWRGIALTRDDCIRRDVIKMLICNFRLAFGAVENVWGIDFRDYFAEDLRLLAPLADDGLVVVDDAGLQVTAKGRLLIRNICMCFDAYLRQKARLQQFSRVI
>NZ_CP012487.1|WP_061499522.1|5053817_5054321_-|Der-GTPase-activating-protein-YihI
MKKPSAQPRSKVRRKTREELNQEGRDRKRDKKHRGNASGSRANGGAESSGSGKGKPQKDPRIGSKKPIPLGVTEPQVKKHHKPKSEKPMLSPQDELEMLETDERLDALLERLEEGETLSAEDQAWVDAKLDRIDELMQKLGLSYDDDEDEEEEERKEDMMRLLKGGN
>NZ_CP012487.1|WP_061499526.1|5054878_5055520_+|YihA-family-ribosome-biogenesis-GTP-binding-protein
METTILTNWNYQQTHFVTSAPDIRHLPADTGIEVAFAGRSNAGKSSALNTLTNQRNLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKIKWQRALGEYLEKRQCLQGLVVLMDIRHPLKDLDQQMIQWAVDSNLQVLVLLTKADKLASGARKAQLNMVREAVLAFQGDVQVEAFSSLKKQGVDKLREKLDTWFSSLPPVEESNE
>NZ_CP012487.1|WP_061499529.1|5055825_5058612_-|DNA-polymerase-I
MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKMGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVTKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYEQADKIAGLTFRGAKTMAAKLEQSKEVAYLSYQLATIKTDVELELTCEQLEVQQPVAEELLGLFKQYEFKRWITDVEAGKWLQAKGAKPATKPQETITVDADADIPAATLSADKYVTILDEETLQQWIAKLKSAPLFAFDTETDSLDNISANLVGLSFATEPGVAAYVPVAHDYLDAPDQISRERALELLKPLLEDEKAVKVGQNLKYDRGVLQNYGIELRGIVFDTMLESYTLDSVAGRHDMDSLSERWLKHKTITFEEIAGKGKNQLTFNQIDLEQAGRYAAEDADVTLQLHLKMWPELQKNAGPLNVFQNIEMPLVPVISRIERNGVNIDPAVLHKHSEELTLRLAELEKKAHEIAEESFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPKDHVIVSADYSQIELRIMAHLSRDKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYMDLYFERYPGVLDYMERTRAQAKARGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWLQSEKPRVRMIMQVHDELVFEVHKDDLEAVSKKIHELMESSTTLDVPLLVEVGSGQNWDQAH
>NZ_CP012487.1|WP_061499532.1|5059035_5059944_+|acyltransferase
MSRLLAVFTLTLSVLLTILVTVVCSVPIIIAGMLKLLLPVPALWRAISAFCNFMMYCWCEGLSWLLYLNPHLKWDVEGLESLNKKNWYLLICNHHSWADIVVLCVLFRKHIPMNKYFLKQQLAWVPFIGLACWALDMPFMRRYSRGYLIRHPERRGKDVETTRRSCEKFRHHPTTIVNFVEGSRFTEQKRNETRSPYKNLLPPKAAGIAMALNVLGTQFDKLLDVTLCYPENDKTPFQDMLSGKLTRIVVRINLLPVNEELHGDYVSDKNFKRGFQQWLNKLWADKDERIDAIKTQYKNAGQ
>NZ_CP012487.1|WP_061499535.1|5059957_5060581_-|thiol:disulfide-interchange-protein-DsbA
MKKIWLALAGMILAFSASAAQITDGKQFITLDKPVAGEPQVLEFFSFYCPHCYDFERVWHIADAVKQKLPEGTKMTKYHVEFLGPLGKEMTQAWAVAMALGVEDKITAPMFEAVQKTQTVQSVADIRDVFIAAGVKGEEYDAAWNSFVVKSLVAQQEKAAADLQLQGVPAMFVNGKYQINQQGMDGSSLDAFVKDYADTVKFLVEKK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012487_1	1.1\|616345\|29\|NZ_CP012487\|PILER-CR	616345-616373	29	DQ115858	Cyanobacteria phage AS-1 contig_51 genomic sequence	651-679	7	0.759

1. spacer 1.1|616345|29|NZ_CP012487|PILER-CR matches to DQ115858 (Cyanobacteria phage AS-1 contig_51 genomic sequence) position: , mismatch: 7, identity: 0.759

aatccgaagcgcaagaactcaagcgcaaa	CRISPR spacer
cgaccgaatcgcaagaactcaagcgctcc	Protospacer
 . ***** *****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1188759 : 1265381

106

Shigella_phage(20.78%)

head,capsid,protease,portal,holin,tail,terminase,lysis,plate,tRNA,integrase

attL 1204688:1204703|attR 1262922:1262937

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061493526.1\|1188759_1188963_+	transcriptional regulator	A0A2I8TV89	Erwinia_phage	2.9e-13	65.4
WP_071889880.1\|1189340_1191302_-	hypothetical protein	NA	NA	NA	NA
WP_061493527.1\|1191350_1192544_-\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	4.5e-106	49.4
WP_061493528.1\|1192820_1194011_-\|integrase	site-specific integrase	I6PDJ1	Cronobacter_phage	4.3e-149	68.2
WP_071889882.1\|1193971_1194178_-	excisionase	I6PBM8	Cronobacter_phage	4.5e-22	72.1
WP_061493529.1\|1194204_1194480_-	hypothetical protein	K7PKM4	Enterobacterial_phage	3.9e-13	48.9
WP_061493530.1\|1194479_1194875_-	hypothetical protein	S4TTI6	Salmonella_phage	7.2e-45	65.6
WP_061493531.1\|1194920_1195508_-	hypothetical protein	NA	NA	NA	NA
WP_061493532.1\|1195601_1195823_-	hypothetical protein	NA	NA	NA	NA
WP_082794136.1\|1195819_1196155_-	hypothetical protein	A0A1P8DTU9	Salmonella_phage	7.0e-33	64.7
WP_061493533.1\|1196151_1196661_-	hypothetical protein	NA	NA	NA	NA
WP_061493534.1\|1196651_1197194_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	4.7e-71	72.9
WP_061493535.1\|1197323_1198148_-	DUF2303 domain-containing protein	A0A0P0ZBZ4	Stx2-converting_phage	1.5e-97	65.7
WP_061493536.1\|1198187_1198550_-	hypothetical protein	Q8HAA1	Salmonella_phage	8.9e-42	72.6
WP_061493537.1\|1199182_1199839_-	LexA family transcriptional repressor	K7PLZ5	Enterobacterial_phage	6.3e-102	82.1
WP_061493538.1\|1199938_1200136_+	hypothetical protein	K7PHB1	Enterobacterial_phage	4.3e-22	75.4
WP_061493539.1\|1200164_1200716_+	hypothetical protein	Q8SBF4	Shigella_phage	1.1e-43	51.6
WP_061493540.1\|1200879_1201059_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	9.6e-13	63.6
WP_061493541.1\|1201048_1201921_+	GntR family transcriptional regulator	K7PLZ7	Enterobacterial_phage	1.1e-42	62.6
WP_061493542.1\|1201917_1202346_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_061493543.1\|1202342_1203227_+	DNA methylase	A0A1C9II58	Salmonella_phage	1.3e-118	68.6
WP_061499808.1\|1203709_1204519_+	DNA-binding protein	A5LH75	Enterobacteria_phage	1.8e-114	77.0
WP_061493544.1\|1204526_1205516_+	DUF968 domain-containing protein	S5FV02	Shigella_phage	4.8e-146	72.0
1204688:1204703	attL	NA	NA	NA	NA
WP_061493545.1\|1205530_1206289_+	antitermination protein	K7PGU5	Enterobacteria_phage	3.4e-91	67.5
WP_061493546.1\|1206453_1206720_+	hypothetical protein	NA	NA	NA	NA
WP_020454456.1\|1206832_1207213_+\|holin	holin	F1C592	Cronobacter_phage	1.9e-50	80.2
WP_061493547.1\|1207199_1207484_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.6e-17	52.2
WP_061493548.1\|1207483_1207924_+	lysozyme	A0A0M4R365	Salmonella_phage	7.5e-59	79.9
WP_061493549.1\|1207920_1208391_+\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	9.2e-39	61.1
WP_061493550.1\|1208394_1208634_-	hypothetical protein	NA	NA	NA	NA
WP_082794137.1\|1208850_1209003_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_061493551.1\|1209090_1209294_-	hypothetical protein	NA	NA	NA	NA
WP_071889891.1\|1209361_1209712_+	HNH endonuclease	Q8SBD7	Shigella_phage	6.6e-50	78.4
WP_061493552.1\|1209839_1210334_+\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	3.1e-85	95.1
WP_061493553.1\|1210330_1212064_+\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	94.7
WP_061493554.1\|1212211_1213438_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	7.4e-213	87.4
WP_061493555.1\|1213430_1214030_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	3.5e-91	82.5
WP_061493556.1\|1214039_1215266_+\|capsid	phage major capsid protein	A0A1W6JP20	Morganella_phage	4.5e-170	75.4
WP_061493557.1\|1215340_1215664_+\|head,tail	phage gp6-like head-tail connector protein	S5FKK6	Shigella_phage	8.5e-36	63.2
WP_061493558.1\|1215660_1216071_+\|head,tail	head-tail adaptor protein	M1FJ87	Enterobacteria_phage	1.3e-49	72.1
WP_061493559.1\|1216045_1216552_+	hypothetical protein	Q8SBH5	Shigella_phage	3.6e-73	80.4
WP_061493560.1\|1216548_1217121_+	hypothetical protein	U5P4H6	Shigella_phage	2.8e-82	77.8
WP_071889894.1\|1217128_1217302_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	1.0e-19	84.2
WP_061493561.1\|1217291_1218791_+\|tail	phage tail protein	S5FKL0	Shigella_phage	9.3e-234	82.9
WP_061493562.1\|1218790_1219147_+\|tail	phage tail protein	Q8W622	Enterobacteria_phage	4.4e-49	79.7
WP_061493563.1\|1219143_1219413_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	1.1e-36	84.1
WP_071889896.1\|1219379_1219562_+	hypothetical protein	NA	NA	NA	NA
WP_061493564.1\|1219554_1221330_+\|tail	phage tail tape measure protein	Q8SBG9	Shigella_phage	2.9e-234	79.0
WP_061493565.1\|1221406_1222087_+	hypothetical protein	NA	NA	NA	NA
WP_061493566.1\|1222174_1223485_+	DNA circularization protein	S5FUX4	Shigella_phage	2.8e-178	71.0
WP_061493567.1\|1223481_1224552_+\|plate	baseplate protein	U5P0H6	Shigella_phage	1.1e-169	81.3
WP_061493568.1\|1224551_1225100_+\|plate	phage baseplate assembly protein V	U5P081	Shigella_phage	1.2e-69	70.3
WP_061493569.1\|1225099_1225525_+\|tail	phage tail protein	U5P0R9	Shigella_phage	2.0e-69	87.9
WP_061493570.1\|1225511_1226570_+\|plate	phage baseplate protein	M1FQW3	Enterobacteria_phage	5.6e-161	78.1
WP_061493571.1\|1226560_1227145_+	DUF2313 domain-containing protein	O22003	Shigella_phage	5.2e-92	80.9
WP_061493572.1\|1228202_1228397_+	hypothetical protein	NA	NA	NA	NA
WP_061493573.1\|1228532_1228772_+	hypothetical protein	K7P7N3	Enterobacteria_phage	9.4e-32	78.2
WP_061493574.1\|1228771_1229089_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.3e-28	58.8
WP_061493575.1\|1229795_1230278_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.4e-29	47.4
WP_061493576.1\|1230437_1230875_+	ubiquinone-binding protein	NA	NA	NA	NA
WP_061493577.1\|1230864_1231161_+	RnfH family protein	NA	NA	NA	NA
WP_061493578.1\|1231167_1231686_-	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_061493579.1\|1231742_1232087_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_061493580.1\|1232235_1233897_-	DNA repair protein RecN	NA	NA	NA	NA
WP_061493581.1\|1233984_1234863_-	NAD(+) kinase	NA	NA	NA	NA
WP_061493582.1\|1234960_1235581_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_061493583.1\|1235632_1236919_-	magnesium/cobalt efflux protein	NA	NA	NA	NA
WP_061499811.1\|1236935_1237724_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_061493584.1\|1237892_1239254_+	signal recognition particle protein	NA	NA	NA	NA
WP_061493585.1\|1239504_1239753_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_061493586.1\|1239771_1240320_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_061493587.1\|1240350_1241124_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_002914145.1\|1241163_1241511_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_061493588.1\|1241687_1241882_-	late control protein B	Q37973	Salmonella_virus	1.8e-25	78.1
WP_061493589.1\|1241965_1243120_-	hypothetical protein	Q6K1G4	Salmonella_virus	2.9e-94	48.0
WP_061493590.1\|1243116_1243578_-\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	2.9e-45	57.0
WP_061493591.1\|1243580_1245311_-	hypothetical protein	M1T2S3	Escherichia_phage	1.4e-44	27.2
WP_061493592.1\|1245303_1245423_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	7.5e-14	87.2
WP_061493593.1\|1245455_1245737_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	3.9e-29	78.4
WP_061493594.1\|1245799_1246318_-\|tail	phage tail protein	Q858V0	Yersinia_virus	5.0e-86	89.0
WP_061493595.1\|1246330_1247512_-\|tail	phage tail protein	S4TRX2	Salmonella_phage	6.9e-200	87.8
WP_082794138.1\|1247643_1248108_-	hypothetical protein	K7P7H0	Enterobacteria_phage	1.6e-11	37.7
WP_082794199.1\|1248076_1249000_-	hypothetical protein	A0A2I8TVA9	Erwinia_phage	1.5e-64	67.9
WP_061493597.1\|1249129_1249726_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	8.0e-64	60.4
WP_061493598.1\|1249725_1250799_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	7.8e-110	46.6
WP_061493599.1\|1250976_1252011_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	2.7e-115	63.1
WP_061493600.1\|1252007_1252619_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	1.4e-87	76.5
WP_061493601.1\|1252611_1253520_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	3.7e-129	78.8
WP_061493602.1\|1253524_1253872_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	4.0e-39	69.6
WP_061493603.1\|1253868_1254504_-\|plate	phage baseplate assembly protein V	M1SV78	Escherichia_phage	1.2e-97	83.9
WP_061493604.1\|1254590_1255058_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	1.7e-45	57.5
WP_082794139.1\|1254996_1255266_-\|holin	holin	S4TNY4	Salmonella_phage	2.3e-26	71.6
WP_061493605.1\|1255165_1255579_-	protein lysB	Q6K1I0	Salmonella_virus	2.1e-15	59.1
WP_061493606.1\|1255575_1256085_-	lysozyme	A0A218M4K3	Erwinia_phage	9.6e-66	73.6
WP_061493607.1\|1256068_1256290_-\|holin	holin	A0A218M4L5	Erwinia_phage	6.5e-11	42.5
WP_061493608.1\|1256280_1256484_-\|tail	phage tail protein	Q858W3	Yersinia_virus	8.3e-21	74.2
WP_061493609.1\|1256702_1256888_-	hypothetical protein	NA	NA	NA	NA
WP_082794140.1\|1256935_1258942_-	replication endonuclease	A0A218M4H2	Erwinia_phage	3.1e-261	71.1
WP_061493610.1\|1258942_1259164_-	hypothetical protein	Q6K1F5	Salmonella_virus	2.2e-19	67.6
WP_061493611.1\|1259259_1259598_-	hypothetical protein	A0A218M4I7	Erwinia_phage	1.1e-36	67.6
WP_061493612.1\|1259636_1260014_-	hypothetical protein	A0A0M4R4X7	Salmonella_phage	3.5e-41	71.4
WP_061493613.1\|1260129_1260981_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	2.6e-92	60.9
WP_061493614.1\|1260988_1262038_+\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	9.0e-151	72.2
WP_061493615.1\|1262220_1262673_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_061493616.1\|1262736_1264101_+	PepSY domain-containing protein	NA	NA	NA	NA
1262922:1262937	attR	NA	NA	NA	NA
WP_061493617.1\|1264310_1265381_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B6VT43	Edwardsiella_phage	2.4e-90	51.8

DBSCAN-SWA_2

1794371 : 1806447

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061494077.1\|1794371_1795787_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.7e-19	31.6
WP_061494078.1\|1795968_1796862_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.9e-45	41.9
WP_061494081.1\|1798375_1799242_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	6.3e-110	66.0
WP_061494087.1\|1799270_1800161_+	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	2.8e-28	34.9
WP_061494089.1\|1800178_1800724_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.9e-50	55.5
WP_082794147.1\|1800727_1800976_+	hypothetical protein	NA	NA	NA	NA
WP_061494091.1\|1800962_1801655_+	hypothetical protein	NA	NA	NA	NA
WP_061494093.1\|1801730_1802492_+	glycosyl transferase family 2	A0A1D8KNV9	Synechococcus_phage	1.8e-52	45.6
WP_061494094.1\|1802488_1803124_+	hypothetical protein	NA	NA	NA	NA
WP_061494096.1\|1803131_1803749_+	HAD family phosphatase	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	2.4e-39	47.2
WP_061494098.1\|1803776_1804517_+	hypothetical protein	A0A1D8KNV9	Synechococcus_phage	2.7e-32	32.2
WP_061494100.1\|1804503_1804824_+	hypothetical protein	NA	NA	NA	NA
WP_061494102.1\|1804984_1805725_+	hypothetical protein	NA	NA	NA	NA
WP_061494104.1\|1805721_1806447_+	ABC transporter ATP-binding protein	A0A2K9L0W2	Tupanvirus	8.4e-07	27.1

DBSCAN-SWA_3

2050314 : 2089828

Burkholderia_virus(42.5%)

protease,head,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061494356.1\|2050314_2051364_+	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	6.1e-06	33.6
WP_023480048.1\|2051381_2051771_+	chemotaxis protein CheY	Q56AR1	Bacillus_thuringiensis_phage	7.7e-07	32.2
WP_061494357.1\|2051782_2052427_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_082794203.1\|2052539_2053151_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_071890685.1\|2054045_2054171_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_045285358.1\|2054140_2054722_-	DNA-invertase Hin	A0A0A7NPV4	Enterobacteria_phage	7.6e-67	72.1
WP_061494361.1\|2054771_2055245_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	2.1e-43	62.1
WP_061494365.1\|2055826_2056423_-\|tail	phage tail protein	A0A218M4J2	Erwinia_phage	7.0e-60	54.8
WP_071889942.1\|2056422_2057379_-	hypothetical protein	M1TAS6	Escherichia_phage	1.8e-65	57.9
WP_061494367.1\|2057381_2057960_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.3e-66	66.3
WP_061494368.1\|2057952_2059056_-\|plate	baseplate protein	A4JWL6	Burkholderia_virus	2.1e-105	52.7
WP_000859115.1\|2059046_2059394_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	7.8e-35	63.3
WP_021544460.1\|2059448_2059961_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	2.1e-20	37.9
WP_061494369.1\|2059960_2061130_-	Cro/Cl family transcriptional regulator	Q6QIA2	Burkholderia_phage	3.9e-86	48.6
WP_006687305.1\|2061117_2061333_-\|tail	bacteriophage tail fiber protein	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_061494370.1\|2061329_2062214_-	hypothetical protein	A4JWL1	Burkholderia_virus	2.6e-50	47.0
WP_061494371.1\|2062213_2064679_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	8.2e-171	42.4
WP_000084225.1\|2064874_2065189_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_061494372.1\|2065287_2065569_-	hypothetical protein	NA	NA	NA	NA
WP_006687298.1\|2065571_2066093_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.4e-67	68.8
WP_061494373.1\|2066092_2067520_-\|tail	phage tail protein	A4JWK5	Burkholderia_virus	2.0e-217	78.6
WP_061494374.1\|2067509_2067764_-	hypothetical protein	NA	NA	NA	NA
WP_023304058.1\|2067760_2068225_-	hypothetical protein	Q6QIB2	Burkholderia_phage	5.7e-41	52.3
WP_061494375.1\|2068224_2068671_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	5.1e-31	51.0
WP_055311821.1\|2068672_2069029_-	DUF2190 domain-containing protein	NA	NA	NA	NA
WP_061494376.1\|2069039_2069993_-	hypothetical protein	A4JWK0	Burkholderia_virus	1.9e-62	43.0
WP_032438842.1\|2070006_2071104_-	hypothetical protein	A4JWJ9	Burkholderia_virus	2.0e-97	50.1
WP_061494377.1\|2071318_2071777_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	3.2e-28	42.4
WP_061494378.1\|2071779_2072601_-\|head	phage head morphogenesis protein	Q6QIB9	Burkholderia_phage	1.4e-98	62.3
WP_061494379.1\|2072581_2074078_-	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	3.7e-174	61.3
WP_061494380.1\|2074077_2075601_-	hypothetical protein	A4JWJ4	Burkholderia_virus	9.9e-183	62.2
WP_011410682.1\|2075597_2076143_-	DUF3486 domain-containing protein	A4JWJ3	Burkholderia_virus	1.2e-58	67.6
WP_061494381.1\|2076142_2076454_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	4.0e-30	61.6
WP_000175096.1\|2076446_2076779_-	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-17	47.7
WP_061494382.1\|2076775_2077426_-	hypothetical protein	A0A0S4L1H0	Pseudomonas_phage	3.4e-07	31.0
WP_061494383.1\|2077409_2078138_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	3.7e-63	59.2
WP_016191696.1\|2078140_2078491_-	hypothetical protein	A4JWP3	Burkholderia_virus	1.2e-22	53.9
WP_061494384.1\|2078738_2079509_+	restriction endonuclease subunit M	A2I2Y7	Vibrio_virus	1.0e-98	65.3
WP_061494385.1\|2079498_2080704_-	hypothetical protein	A0A291AUQ1	Sinorhizobium_phage	1.4e-46	31.5
WP_061494386.1\|2080706_2081714_-	nucleoid-associated protein	A0A291AUQ0	Sinorhizobium_phage	3.2e-57	36.0
WP_061494387.1\|2081784_2082192_-	transcriptional regulator	NA	NA	NA	NA
WP_001041677.1\|2082280_2082505_+	hypothetical protein	NA	NA	NA	NA
WP_061494388.1\|2082501_2082807_+	IclR family transcriptional regulator	Q5ZR02	Pseudomonas_phage	5.4e-24	58.0
WP_061494389.1\|2082816_2083725_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	3.7e-76	55.7
WP_011410679.1\|2085507_2086674_+	hypothetical protein	A4JWN1	Burkholderia_virus	1.3e-121	61.1
WP_023214064.1\|2086676_2086946_+	hypothetical protein	NA	NA	NA	NA
WP_061494390.1\|2086963_2087575_+	DUF3164 domain-containing protein	A0A2D1GNM4	Pseudomonas_phage	3.6e-75	68.0
WP_032639427.1\|2087654_2087843_+	hypothetical protein	NA	NA	NA	NA
WP_061494391.1\|2087839_2088136_+	hypothetical protein	NA	NA	NA	NA
WP_061494392.1\|2088122_2088812_+	DUF2786 domain-containing protein	A0A1W6DYA0	Aeromonas_phage	1.3e-25	34.2
WP_061494393.1\|2088808_2089024_+	hypothetical protein	NA	NA	NA	NA
WP_061494394.1\|2089013_2089442_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	1.4e-25	48.9
WP_061494395.1\|2089438_2089828_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	8.4e-30	52.5

DBSCAN-SWA_4

2470292 : 2530961

Enterobacteria_phage(32.56%)

protease,portal,holin,tail,lysis,integrase

attL 2486452:2486511|attR 2531741:2531842

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061494711.1\|2470292_2472053_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_061494712.1\|2472233_2472686_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_061494713.1\|2472765_2473821_-	porin OmpA	NA	NA	NA	NA
WP_061494714.1\|2474188_2474698_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_061494715.1\|2474915_2475536_+	competence protein	NA	NA	NA	NA
WP_061494716.1\|2475532_2477659_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_061494717.1\|2477676_2478123_-	YccF domain-containing protein	NA	NA	NA	NA
WP_061494718.1\|2478245_2480300_+	DNA helicase IV	A7KV33	Bacillus_phage	9.4e-19	28.1
WP_061494719.1\|2480327_2480786_-	methylglyoxal synthase	NA	NA	NA	NA
WP_061494720.1\|2480922_2481336_+	CoA-binding protein	NA	NA	NA	NA
WP_061494721.1\|2481362_2481680_-	heat shock protein HspQ	NA	NA	NA	NA
WP_061494722.1\|2481740_2482931_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_061494723.1\|2483023_2483305_+	acylphosphatase	NA	NA	NA	NA
WP_061494724.1\|2483301_2483631_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_061494725.1\|2483721_2484381_-	transmembrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	4.4e-47	54.9
WP_061494726.1\|2484652_2486281_+	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA
2486452:2486511	attL	NA	NA	NA	NA
WP_082794154.1\|2486608_2487640_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	8.1e-80	47.4
WP_071889967.1\|2487578_2487857_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_061494727.1\|2487927_2490093_-	exonuclease	K7PJT5	Enterobacteria_phage	6.5e-95	40.5
WP_061494728.1\|2490234_2490591_-	transcriptional regulator	NA	NA	NA	NA
WP_061494729.1\|2490625_2490811_-	DUF1482 domain-containing protein	NA	NA	NA	NA
WP_061494730.1\|2491256_2491640_-	transcriptional regulator	K7PH71	Enterobacterial_phage	5.6e-18	53.5
WP_071889969.1\|2491745_2491958_+	XRE family transcriptional regulator	A0A077K9X2	Edwardsiella_phage	2.9e-16	62.1
WP_061494731.1\|2491960_2492515_+	hypothetical protein	NA	NA	NA	NA
WP_061494732.1\|2492570_2493374_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	2.1e-51	44.2
WP_061494733.1\|2493376_2494117_+	DNA replication protein DnaC	S4TNF5	Salmonella_phage	2.6e-96	70.4
WP_061494734.1\|2494136_2494577_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_061494735.1\|2494570_2494882_+	hypothetical protein	NA	NA	NA	NA
WP_061494736.1\|2494878_2495472_+	hypothetical protein	NA	NA	NA	NA
WP_061494737.1\|2495474_2495819_+	hypothetical protein	NA	NA	NA	NA
WP_061494738.1\|2495811_2496081_+	hypothetical protein	NA	NA	NA	NA
WP_061494739.1\|2496077_2498057_+	DNA methyltransferase	H9C171	Pectobacterium_phage	2.1e-201	53.6
WP_061494740.1\|2498108_2498888_+	hypothetical protein	NA	NA	NA	NA
WP_071889972.1\|2499729_2499969_+	hypothetical protein	H6WRY6	Salmonella_phage	3.6e-15	57.1
WP_061494741.1\|2500101_2500308_+	hypothetical protein	H6WRY8	Salmonella_phage	2.6e-14	50.0
WP_061494742.1\|2500304_2500673_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	1.8e-42	66.7
WP_061494743.1\|2500657_2501653_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.0e-128	63.4
WP_061494744.1\|2501666_2502287_+	hypothetical protein	H9C175	Pectobacterium_phage	1.3e-61	55.9
WP_061494745.1\|2502510_2502702_+	hypothetical protein	Q8SBE3	Shigella_phage	6.8e-17	66.7
WP_061494746.1\|2502851_2503913_+	site-specific DNA-methyltransferase	K7PKK9	Enterobacteria_phage	9.6e-169	78.5
WP_061494747.1\|2504053_2504374_+\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	9.7e-40	77.1
WP_061494748.1\|2504360_2504792_+	lysozyme	A0A0B5KND4	Acinetobacter_phage	3.2e-38	57.9
WP_061494749.1\|2504788_2505259_+\|lysis	lysis protein	Q8HA85	Salmonella_phage	5.1e-29	49.7
WP_061494750.1\|2505785_2506058_+	hypothetical protein	NA	NA	NA	NA
WP_061494751.1\|2506114_2506297_+	hypothetical protein	NA	NA	NA	NA
WP_061494752.1\|2506727_2507222_+	DUF1441 domain-containing protein	K7PJY2	Enterobacterial_phage	3.5e-65	82.8
WP_061494753.1\|2507221_2509330_+	DNA packaging protein	K7PH52	Enterobacterial_phage	0.0e+00	83.5
WP_061494754.1\|2509326_2509542_+	hypothetical protein	A5LH28	Enterobacteria_phage	4.5e-25	82.9
WP_061494755.1\|2509538_2511050_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	2.0e-244	82.3
WP_082794155.1\|2510976_2513010_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	84.9
WP_061494756.1\|2513091_2513418_+	DUF2190 domain-containing protein	K7PJY3	Enterobacterial_phage	4.0e-33	66.4
WP_061494757.1\|2513410_2513683_+	hypothetical protein	K7PH43	Enterobacteria_phage	2.7e-19	54.9
WP_061494758.1\|2513691_2514243_+\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	7.2e-59	76.4
WP_061494759.1\|2514239_2514638_+\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	5.2e-43	64.6
WP_061494760.1\|2514648_2515383_+\|tail	phage tail protein	M9NYX0	Enterobacteria_phage	4.9e-95	71.4
WP_061494761.1\|2515415_2515820_+\|tail	phage minor tail protein G	NA	NA	NA	NA
WP_061494762.1\|2515828_2516137_+\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	1.5e-21	48.5
WP_061494763.1\|2516117_2518625_+\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	3.8e-139	38.3
WP_061499955.1\|2518629_2518977_+\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	5.9e-35	59.1
WP_061494764.1\|2518973_2519729_+\|tail	phage minor tail protein L	K7PKU0	Enterobacteria_phage	3.9e-124	82.9
WP_061494765.1\|2519730_2520441_+	peptidase P60	K7P7C3	Enterobacteria_phage	1.6e-119	81.4
WP_061494766.1\|2520452_2521052_+\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	1.1e-76	75.9
WP_061494767.1\|2521113_2524290_+	host specificity protein J	O64335	Escherichia_phage	0.0e+00	78.1
WP_061494768.1\|2524710_2525295_+	hypothetical protein	A0A1B2AP04	Escherichia_phage	2.6e-22	40.9
WP_061494769.1\|2525408_2525645_+	hypothetical protein	Q38624	Escherichia_phage	1.0e-17	58.4
WP_061494771.1\|2527352_2527730_+\|tail	tail fiber assembly protein	I7LEG3	Yersinia_phage	6.3e-30	49.2
WP_061494772.1\|2527863_2528286_+	translesion error-prone DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	1.5e-35	57.5
WP_061494773.1\|2528288_2529554_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	4.0e-222	88.4
WP_061494774.1\|2529546_2530218_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	7.1e-77	58.6
WP_061494775.1\|2530300_2530498_-	hypothetical protein	NA	NA	NA	NA
WP_061494776.1\|2530496_2530961_+	hypothetical protein	A0A218M4J4	Erwinia_phage	1.8e-07	32.7
2531741:2531842	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2754610 : 2818959

Pectobacterium_phage(44.44%)

head,holin,tail,transposase,terminase,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061495082.1\|2754610_2756539_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.2e-129	37.3
WP_071532057.1\|2756542_2757085_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	8.2e-15	32.9
WP_001124225.1\|2757177_2757375_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_013366084.1\|2757424_2757781_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_061495084.1\|2758066_2759050_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	6.4e-34	42.6
WP_061495086.1\|2759064_2761452_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_006820203.1\|2761456_2761756_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_061495088.1\|2761856_2762837_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_061495090.1\|2762871_2763423_+	glutathione peroxidase	NA	NA	NA	NA
WP_082794162.1\|2763428_2764172_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	2.4e-09	30.0
WP_061495093.1\|2764249_2764714_+	endopeptidase	A0A217EQL1	Bacillus_phage	6.6e-13	36.7
WP_061495095.1\|2765038_2765752_+	EAL domain-containing protein	NA	NA	NA	NA
WP_061495097.1\|2765813_2767256_+	YdiU family protein	NA	NA	NA	NA
WP_061495099.1\|2767263_2767455_-	hemin uptake protein HemP	NA	NA	NA	NA
WP_061495101.1\|2767604_2768651_-	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	5.7e-81	46.5
WP_061495103.1\|2768805_2769639_-	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_061495105.1\|2769969_2772348_+	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	6.1e-171	36.1
WP_061495107.1\|2772505_2772760_-	pyocin activator protein PrtN	A0A1W6JP35	Morganella_phage	3.7e-18	53.6
WP_061495109.1\|2772844_2773108_-	DUF4060 domain-containing protein	K7PHF4	Enterobacteria_phage	2.2e-21	72.0
WP_061495111.1\|2773094_2773277_-	hypothetical protein	NA	NA	NA	NA
WP_061495112.1\|2773317_2774397_-	enterohemolysin	H6WRX0	Salmonella_phage	1.8e-101	53.7
WP_061495114.1\|2774407_2777305_-	exodeoxyribonuclease VIII	H6WRX1	Salmonella_phage	1.5e-272	57.8
WP_061495117.1\|2777437_2777725_-	hypothetical protein	H6WRX2	Salmonella_phage	2.0e-28	58.9
WP_061499990.1\|2778436_2778646_+	DUF2767 domain-containing protein	I6R0R9	Salmonella_phage	8.8e-18	63.8
WP_061495119.1\|2778753_2779230_-	N-acetyltransferase	NA	NA	NA	NA
WP_061495121.1\|2779430_2780111_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	4.5e-87	72.4
WP_061495124.1\|2780239_2780470_+	transcriptional regulator	A0A2H4FNF3	Salmonella_phage	1.4e-16	54.1
WP_061495126.1\|2780502_2780823_+	hypothetical protein	A0A0M4RU01	Salmonella_phage	2.2e-36	70.8
WP_061495128.1\|2780908_2781904_+	hypothetical protein	H6WRX7	Salmonella_phage	2.4e-113	82.3
WP_061495130.1\|2781887_2782625_+	Replication protein P	A0A0M3ULE2	Salmonella_phage	5.4e-78	62.1
WP_061495132.1\|2782627_2782948_+	hypothetical protein	NA	NA	NA	NA
WP_061495133.1\|2783105_2784212_+	ATPase	R4TQL5	Phaeocystis_globosa_virus	1.6e-20	31.1
WP_061495136.1\|2784216_2786445_+	hypothetical protein	NA	NA	NA	NA
WP_004723446.1\|2786719_2786983_+\|transposase	transposase	NA	NA	NA	NA
WP_082794163.1\|2787006_2787840_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.9e-50	42.9
WP_061495139.1\|2788071_2788569_+	hypothetical protein	NA	NA	NA	NA
WP_061495141.1\|2788661_2789261_+	DUF1367 domain-containing protein	S4TTI0	Salmonella_phage	2.1e-96	84.4
WP_071890701.1\|2789263_2789464_+	hypothetical protein	H6WRY8	Salmonella_phage	5.7e-14	61.9
WP_061499996.1\|2789456_2789750_+	DUF1364 domain-containing protein	E5AGG0	Erwinia_phage	1.8e-40	77.3
WP_061495150.1\|2789853_2790567_+	antiterminator	I6PDF8	Cronobacter_phage	1.5e-56	53.4
WP_061495152.1\|2790704_2790896_+	hypothetical protein	Q8SBE3	Shigella_phage	3.1e-17	69.8
WP_061495154.1\|2791045_2792116_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.6e-169	79.6
WP_061495157.1\|2792165_2792459_-	hypothetical protein	NA	NA	NA	NA
WP_061495159.1\|2792459_2793287_-	hypothetical protein	NA	NA	NA	NA
WP_061495161.1\|2793279_2793474_-	hypothetical protein	NA	NA	NA	NA
WP_061495163.1\|2793528_2793744_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	9.1e-26	77.5
WP_061495165.1\|2793743_2794256_+	lysozyme	I6PBN2	Cronobacter_phage	6.7e-51	64.3
WP_071890004.1\|2794475_2794676_+	hypothetical protein	NA	NA	NA	NA
WP_071890007.1\|2795261_2795435_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_061495169.1\|2795503_2796526_+\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	2.3e-34	41.6
WP_061495171.1\|2796758_2798399_+\|terminase	terminase	H9C191	Pectobacterium_phage	3.2e-304	89.7
WP_061495174.1\|2798401_2799793_+	hypothetical protein	H9C192	Pectobacterium_phage	1.1e-212	78.4
WP_061495176.1\|2799842_2800592_+\|head	phage head morphogenesis protein	H9C193	Pectobacterium_phage	1.1e-99	73.9
WP_061495177.1\|2800610_2801810_+	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	9.6e-149	82.2
WP_061495180.1\|2801809_2802328_+	hypothetical protein	H9C195	Pectobacterium_phage	8.9e-51	66.5
WP_061495181.1\|2802342_2803293_+	DUF2184 domain-containing protein	H9C196	Pectobacterium_phage	6.2e-151	84.1
WP_061495183.1\|2803295_2803649_+	hypothetical protein	H9C197	Pectobacterium_phage	1.1e-20	43.1
WP_061495185.1\|2803678_2804101_+	DUF4054 domain-containing protein	H9C198	Pectobacterium_phage	6.3e-63	87.1
WP_061495187.1\|2804097_2804565_+	hypothetical protein	H9C199	Pectobacterium_phage	2.2e-64	80.6
WP_061495189.1\|2804567_2804987_+	hypothetical protein	H9C1A0	Pectobacterium_phage	6.9e-70	85.0
WP_061495191.1\|2804986_2805511_+	hypothetical protein	H9C1A1	Pectobacterium_phage	1.1e-80	82.2
WP_061495192.1\|2805519_2806674_+	DUF3383 domain-containing protein	H9C1A2	Pectobacterium_phage	1.6e-193	87.5
WP_061495194.1\|2806680_2807085_+	hypothetical protein	H9C1A3	Pectobacterium_phage	5.8e-66	95.5
WP_061495196.1\|2807084_2807471_+	hypothetical protein	H9C1A4	Pectobacterium_phage	8.9e-40	65.9
WP_061495198.1\|2807733_2809431_+	lysozyme	H9C1A7	Pectobacterium_phage	5.3e-177	59.2
WP_061495200.1\|2809433_2810078_+	hypothetical protein	H9C1A8	Pectobacterium_phage	1.4e-74	77.1
WP_061495202.1\|2810074_2810365_+	hypothetical protein	H9C1A9	Pectobacterium_phage	6.3e-38	77.1
WP_061495204.1\|2810357_2811248_+	hypothetical protein	H9C1B0	Pectobacterium_phage	1.7e-142	78.0
WP_082794164.1\|2811244_2811847_+	hypothetical protein	H9C1B1	Pectobacterium_phage	8.1e-80	66.5
WP_061495207.1\|2811909_2812260_+	hypothetical protein	H9C1B2	Pectobacterium_phage	6.0e-51	80.2
WP_061495209.1\|2812259_2813474_+\|plate	phage baseplate protein	H9C1B3	Pectobacterium_phage	2.0e-162	72.1
WP_061495211.1\|2813460_2814363_+	DUF2612 domain-containing protein	H9C1B4	Pectobacterium_phage	2.1e-108	67.7
WP_061495213.1\|2814364_2816830_+	carbohydrate-binding protein	H9C1B5	Pectobacterium_phage	3.1e-202	49.9
WP_061495215.1\|2816901_2818959_+\|tail	phage tail protein	H9C1B7	Pectobacterium_phage	4.8e-172	51.6

DBSCAN-SWA_6

2980835 : 2989535

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061495581.1\|2980835_2981447_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	6.6e-29	38.7
WP_061495583.1\|2981524_2982382_-	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	1.2e-20	32.2
WP_061495584.1\|2982383_2983001_-	dimethylsulfoxide reductase, chain B	A0A077SL61	Escherichia_phage	1.1e-76	60.6
WP_061495586.1\|2983011_2985450_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	8.9e-218	50.1
WP_061495588.1\|2985601_2985883_-	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_061500011.1\|2986055_2986775_+	YnfC family lipoprotein	NA	NA	NA	NA
WP_061495590.1\|2986793_2987351_-	spermidine acetyltransferase	NA	NA	NA	NA
WP_061495592.1\|2987403_2987742_-	hypothetical protein	NA	NA	NA	NA
WP_061495593.1\|2987881_2988208_+	YnfA family protein	A0A218MNG8	uncultured_virus	6.0e-21	52.5
WP_061495595.1\|2988320_2989535_+	D-galactonate dehydratase family protein	Q6A202	Oenococcus_phage	1.4e-46	29.5

DBSCAN-SWA_7

3637966 : 3688535

Burkholderia_virus(41.46%)

head,tail,plate,tRNA,integrase

attL 3648742:3648758|attR 3690168:3690184

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061496711.1\|3637966_3639745_-\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	2.8e-11	29.1
WP_061496713.1\|3640011_3640578_+	hydrolase	NA	NA	NA	NA
WP_061496715.1\|3640574_3641393_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	1.1e-58	82.7
WP_061496717.1\|3641444_3641840_+	hypothetical protein	NA	NA	NA	NA
WP_061496718.1\|3641879_3642620_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	NA	NA	NA
WP_061496720.1\|3642616_3643588_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_061496722.1\|3643673_3644417_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_061496724.1\|3644494_3645055_-	VOC family protein	NA	NA	NA	NA
WP_061496726.1\|3645201_3646935_+\|tRNA	arginine--tRNA ligase	A0A2K9L2F0	Tupanvirus	4.4e-86	34.5
WP_061496728.1\|3647046_3648186_-	glycoside hydrolase family 105 protein	NA	NA	NA	NA
WP_061496729.1\|3648196_3649774_-	MFS transporter	NA	NA	NA	NA
3648742:3648758	attL	NA	NA	NA	NA
WP_061496730.1\|3650073_3650484_-	flagellar protein FlhE	NA	NA	NA	NA
WP_061496731.1\|3650483_3652562_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_061496732.1\|3653276_3653666_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	6.5e-30	51.7
WP_061496734.1\|3653662_3654091_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	1.2e-24	48.1
WP_071890037.1\|3654080_3654296_-	hypothetical protein	NA	NA	NA	NA
WP_061496736.1\|3654292_3654985_-	DUF2786 domain-containing protein	A0A1W6DYA0	Aeromonas_phage	7.7e-26	33.6
WP_061496738.1\|3655161_3655365_-	hypothetical protein	NA	NA	NA	NA
WP_061496740.1\|3655354_3655567_-	hypothetical protein	NA	NA	NA	NA
WP_061496742.1\|3655645_3656257_-	DUF3164 domain-containing protein	A0A2D1GNM4	Pseudomonas_phage	1.4e-74	68.7
WP_061496744.1\|3656258_3656522_-	hypothetical protein	NA	NA	NA	NA
WP_000835317.1\|3656546_3656816_-	hypothetical protein	NA	NA	NA	NA
WP_061496746.1\|3656818_3657985_-	hypothetical protein	A4JWN1	Burkholderia_virus	3.7e-121	60.6
WP_061496748.1\|3657995_3659765_-\|integrase	integrase	Q6QIE0	Burkholderia_phage	2.4e-228	67.8
WP_061496750.1\|3659768_3660677_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	5.3e-75	55.1
WP_020803508.1\|3660686_3660992_-	IclR family transcriptional regulator	Q5ZR02	Pseudomonas_phage	7.1e-24	59.0
WP_045285382.1\|3661044_3661233_-	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	1.1e-16	69.4
WP_054181123.1\|3661322_3661688_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_061496751.1\|3661808_3662075_-	hypothetical protein	NA	NA	NA	NA
WP_061496753.1\|3662132_3662903_-	restriction endonuclease subunit M	A2I2Y7	Vibrio_virus	3.1e-100	66.5
WP_071890039.1\|3663140_3663713_+	DUF2441 domain-containing protein	NA	NA	NA	NA
WP_061496759.1\|3663733_3663991_-	hypothetical protein	NA	NA	NA	NA
WP_054622930.1\|3664169_3664520_+	hypothetical protein	A4JWP3	Burkholderia_virus	9.0e-23	53.9
WP_061496761.1\|3664519_3665257_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	1.7e-63	59.8
WP_061496762.1\|3665246_3665900_+	hypothetical protein	A0A0S4L1H0	Pseudomonas_phage	4.4e-07	29.7
WP_000175096.1\|3665896_3666229_+	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-17	47.7
WP_061494381.1\|3666221_3666533_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	4.0e-30	61.6
WP_011410682.1\|3666532_3667078_+	DUF3486 domain-containing protein	A4JWJ3	Burkholderia_virus	1.2e-58	67.6
WP_061494380.1\|3667074_3668598_+	hypothetical protein	A4JWJ4	Burkholderia_virus	9.9e-183	62.2
WP_061494379.1\|3668597_3670094_+	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	3.7e-174	61.3
WP_061494378.1\|3670074_3670896_+\|head	phage head morphogenesis protein	Q6QIB9	Burkholderia_phage	1.4e-98	62.3
WP_061494377.1\|3670898_3671357_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	3.2e-28	42.4
WP_032438842.1\|3671571_3672669_+	hypothetical protein	A4JWJ9	Burkholderia_virus	2.0e-97	50.1
WP_061494376.1\|3672682_3673636_+	hypothetical protein	A4JWK0	Burkholderia_virus	1.9e-62	43.0
WP_055311821.1\|3673646_3674003_+	DUF2190 domain-containing protein	NA	NA	NA	NA
WP_061494375.1\|3674004_3674451_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	5.1e-31	51.0
WP_023304058.1\|3674450_3674915_+	hypothetical protein	Q6QIB2	Burkholderia_phage	5.7e-41	52.3
WP_061494374.1\|3674911_3675166_+	hypothetical protein	NA	NA	NA	NA
WP_061494373.1\|3675155_3676583_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	2.0e-217	78.6
WP_006687298.1\|3676582_3677104_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.4e-67	68.8
WP_061494372.1\|3677106_3677388_+	hypothetical protein	NA	NA	NA	NA
WP_000084225.1\|3677486_3677801_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_061494371.1\|3677996_3680462_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	8.2e-171	42.4
WP_061494370.1\|3680461_3681346_+	hypothetical protein	A4JWL1	Burkholderia_virus	2.6e-50	47.0
WP_006687305.1\|3681342_3681558_+\|tail	bacteriophage tail fiber protein	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_061494369.1\|3681545_3682715_+	Cro/Cl family transcriptional regulator	Q6QIA2	Burkholderia_phage	3.9e-86	48.6
WP_021544460.1\|3682714_3683227_+\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	2.1e-20	37.9
WP_000859115.1\|3683281_3683629_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	7.8e-35	63.3
WP_061494368.1\|3683619_3684723_+\|plate	baseplate protein	A4JWL6	Burkholderia_virus	2.1e-105	52.7
WP_061494367.1\|3684715_3685294_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.3e-66	66.3
WP_071889942.1\|3685296_3686253_+	hypothetical protein	M1TAS6	Escherichia_phage	1.8e-65	57.9
WP_061494365.1\|3686252_3686849_+\|tail	phage tail protein	A0A218M4J2	Erwinia_phage	7.0e-60	54.8
WP_061494361.1\|3687430_3687904_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	2.1e-43	62.1
WP_045285358.1\|3687953_3688535_+	DNA-invertase Hin	A0A0A7NPV4	Enterobacteria_phage	7.6e-67	72.1
3690168:3690184	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4491445 : 4507375

Shigella_phage(20.0%)

integrase,transposase

attL 4487924:4487939|attR 4512071:4512086

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4487924:4487939	attL	NA	NA	NA	NA
WP_000537152.1\|4491445_4491730_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_082794149.1\|4491726_4492581_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-80	56.2
WP_061498076.1\|4492620_4493046_-	hypothetical protein	NA	NA	NA	NA
WP_082794212.1\|4493023_4493326_-	type IV secretion protein Rhs	NA	NA	NA	NA
WP_061498082.1\|4493864_4494689_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.5e-44	39.3
WP_004853352.1\|4494721_4494985_-\|transposase	transposase	NA	NA	NA	NA
WP_061498086.1\|4495791_4496412_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_061498090.1\|4497001_4499974_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	2.3e-18	22.7
WP_061498095.1\|4500083_4501331_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_061498098.1\|4502574_4504182_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	7.6e-101	41.3
WP_061498101.1\|4504547_4505801_-\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	4.3e-83	42.7
WP_061498105.1\|4506163_4507375_+\|integrase	integrase	NA	NA	NA	NA
4512071:4512086	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012487

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection