CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP012963	Rhodobacter sphaeroides strain MBTLJ-8 plasmid unnamed, complete sequence	1 crisprs	NA	1	1
NZ_CP012962	Rhodobacter sphaeroides strain MBTLJ-8 plasmid unnamed, complete sequence	0 crisprs	csa3	0	0
NZ_CP012960	Rhodobacter sphaeroides strain MBTLJ-8 chromosome 1, complete sequence	2 crisprs	csa3,DEDDh,cas3	0	7
NZ_CP012961	Rhodobacter sphaeroides strain MBTLJ-8 chromosome 2, complete sequence	0 crisprs	csa3	0	3
NZ_CP012964	Rhodobacter sphaeroides strain MBTLJ-8 plasmid unnamed, complete sequence	0 crisprs	NA	0	0
NZ_CP012965	Rhodobacter sphaeroides strain MBTLJ-8 plasmid unnamed, complete sequence	0 crisprs	NA	0	0
NZ_CP012967	Rhodobacter sphaeroides strain MBTLJ-8 plasmid unnamed	0 crisprs	NA	0	0
NZ_CP012966	Rhodobacter sphaeroides strain MBTLJ-8 plasmid unnamed	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012963_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012963_1

3824-3902

Orphan

Consensus_repeat	Method
GATTTGTTTCGCGCGCGAAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012963_1

>merge|NZ_CP012963|1|3824-3902|CRISPRCasFinder
GATTTGTTTCGCGCGCGAAACAATTTGCCCCCGCCGTGCCGCCCTGCCGACCCCCCGATTTGTTTCGCGCGCGAAACAA

>NZ_CP012963|1|1|3824-3902|CRISPRCasFinder
GATTTGTTTCGCGCGCGAAACAA	TTTGCCCCCGCCGTGCCGCCCTGCCGACCCCCC
GATTTGTTTCGCGCGCGAAACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012963.1\|WP_011836182.1\|9681_10533_+\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
NZ_CP012963.1\|WP_017140428.1\|401_1541_+\|sugar-transporter	unknown	unknown	gnl\|CDD\|226055
NZ_CP012963.1\|WP_011836181.1\|8644_9685_+\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NZ_CP012963.1\|WP_011836179.1\|2677_3793_-\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|274586
NZ_CP012963.1\|WP_050988687.1\|3917_5324_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274585
NZ_CP012963.1\|WP_011836184.1\|12543_13269_-\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NZ_CP012963.1\|WP_011836183.1\|11394_12177_-\|sulfotransferase	unknown	unknown	gnl\|CDD\|366246
NZ_CP012963.1\|WP_002724637.1\|13470_14307_+\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NZ_CP012963.1\|WP_002724800.1\|1557_2379_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213187
NZ_CP012963.1\|WP_002724803.1\|6062_7025_+\|replication-initiator-protein-A	unknown	unknown	gnl\|CDD\|370826
NZ_CP012963.1\|WP_009565041.1\|8077_8641_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_CP012963.1\|WP_061350900.1\|7075_8014_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133039
NZ_CP012963.1\|WP_002724812.1\|10529_11420_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274

Protein	Function_ID	Function_description	E-value
NZ_CP012963.1\|WP_011836182.1\|9681_10533_+\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	1.37587e-123
NZ_CP012963.1\|WP_017140428.1\|401_1541_+\|sugar-transporter	gnl\|CDD\|226055	COG3524, KpsE, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	1.37396e-72
NZ_CP012963.1\|WP_011836181.1\|8644_9685_+\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP012963.1\|WP_011836179.1\|2677_3793_-\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|274586	TIGR03454, partition_RepB, plasmid partitioning protein RepB. Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently. [Mobile and extrachromosomal element functions, Plasmid functions].	9.68349e-12
NZ_CP012963.1\|WP_050988687.1\|3917_5324_-\|AAA-family-ATPase	gnl\|CDD\|274585	TIGR03453, partition_RepA, plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. [Mobile and extrachromosomal element functions, Plasmid functions].	4.83014e-59
NZ_CP012963.1\|WP_011836184.1\|12543_13269_-\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	2.53227e-11
NZ_CP012963.1\|WP_011836183.1\|11394_12177_-\|sulfotransferase	gnl\|CDD\|366246	pfam00685, Sulfotransfer_1, Sulfotransferase domain.	7.28903e-11
NZ_CP012963.1\|WP_002724637.1\|13470_14307_+\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NZ_CP012963.1\|WP_002724800.1\|1557_2379_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213187	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system. The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.	1.78218e-89
NZ_CP012963.1\|WP_002724803.1\|6062_7025_+\|replication-initiator-protein-A	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	2.32126e-121
NZ_CP012963.1\|WP_009565041.1\|8077_8641_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	5.08975e-99
NZ_CP012963.1\|WP_061350900.1\|7075_8014_+\|glycosyltransferase	gnl\|CDD\|133039	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	2.84863e-72
NZ_CP012963.1\|WP_002724812.1\|10529_11420_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	2.32712e-162

>NZ_CP012963.1|WP_011836179.1|2677_3793_-|ParB-N-terminal-domain-containing-protein
MAKRKRLTLPPLGGFAPGPASASEASPAPASPPALGPGLAPAPISRVTGEAAATAALREVAEELGAARSEGRLVLRLELDRIEEGWLVRDRIGLEAEELASLMTSLSAHGQRSPIEVTDMGEGRFGLISGWRRVTALRRLHAETGEERFATVLALLRRPDTAAAAYVAMVEENEIRAGLSYFERARIAAKAVEAGVFATDKLALQQLYGSASRAKRSKIGSFLGIYRALEGALRYPSALPERLGLALARRLEEEPGVAAKITAALAAAAPDSAEAELALIADLLAPAAEAAPEQEPARPSAPDPAPDAPAPAPAPDPAPAQPRSTRPPAPAAELRPGLFLKAEGAGSLHLYGPAVDETFRARLRDWLASEG
>NZ_CP012963.1|WP_002724800.1|1557_2379_+|ABC-transporter-ATP-binding-protein
MIELRNVSKSYVLNGTRKVVARDLNFTFPSGESVGLLGRNGAGKSSLLRMLAGTMLPDTGEILSSGTISWPVGFSGSFHPELTGAQNVRFVARLYGVDTEAMIAFVRDFAEIGQHFHLPVRSYSSGMRSRLAFGISMAVPFDTYLIDEVTAVGDAAFSAKSNAILRARLEESGAVIVSHSMPLLKKLCRSGAVLHDGQLFYYERIEQAIRHHESMMRGALPRWMRGDLDEGEGEEAGAAAPGPRARARAGAARAGGGRAARPGPASGTSEPRG
>NZ_CP012963.1|WP_017140428.1|401_1541_+|sugar-transporter
MPAAAPRAAARLRHHGLLASFLGLVLAPILASGLYLFAIAEDQYTSTVGFSVRTEEMGSALDLLGGLSSFGLTGGGSASDSDILYQFIQSQELVQRINERIDLRAIYSKPGFDPVFSFDPDGGIEDLVDYWKDMVRISYDSTTGLIELRVHAFTPEDAQAVAQGILDESNRMINDLSAIARADATRYAREELDNAVERLRVQRVAMTEFRSRTQIVDPSADIQAQMGLLNTLQQQLASASIDLNLLRQTTQPSDPRIAQNERRIGVIEELIQREREKFGLGGGTGTGASTYSTMIAEFERLTVDLDFAEKAYIAALTNHDAAIAEAQRMSRYLATYVRPTLAQQSLYPQRGLLTLMIGGFALMLWAIGMLIYYSVRDRR
>NZ_CP012963.1|WP_050988687.1|3917_5324_-|AAA-family-ATPase
MRKSPPAREPQVPLPPYFNISPDAALAELEAPLTTAGFAEIARSCAQGRDDLAARGLDAEGRRSLRLFSTWEITRYLIPVATAHFRRVLKANPDLPQGISETEGGAKWFTLDEVLRLRAHFAAEGSKAKEYRPYRPAGLPAKLVAVANFKGGVGKTSTAAHLAMSAALDGYRVLVIDLDSQGSMTSIFGGRVADEWGTVFPLLARHYAAHLQAENRARVARGDPPVPMDETLTEAQKIRAGDLIAKTHWPNIDLIGAQLNLYWAEFQIPVWRMQGRSWKLWDALTDVLAEDGVLDRYDVIFLDTPPALGYLTINGLAAADILLVPLGASFLEFDSTGRFFDMLHSTFRSIEEGENIAARALGREELAFEWDAVRAVLTRYDGAQQAEMAALMQAYMGRTMAPERQDFTALIGQAGEQVNGIYEADYRDFNRDTYIRGRETFDATYAAFKRLLVGIWRREELAAADAAE
>NZ_CP012963.1|WP_002724803.1|6062_7025_+|replication-initiator-protein-A
MADFFICDILDALPKDDMASMEHPVFSLATRPDLRVLDYAHNGVRITVTPSVRGLATLFDKDILIYCVSQLMAALNAGRAISRTLHLTAHDLMTATHRETSGDGYQRLREAFERLAGTRITTNMEVGGREITTGFGLIESWQIVRRSRGGRMVQVMVTLSEWLFQAVLTKSVLTLSRDYFRLRKPLERRIYELARKHCGQQPEWRVSIATLAKKSGSASPLRVFRKMIRDMIAADSLPGYSLAEEPGDLLCVTRRAAVLAPGLAPALRDTTLERVRARMPGWDVHALVAEWHAFWHSSGQPRLRSADAAFLGWIERRVPG
>NZ_CP012963.1|WP_061350900.1|7075_8014_+|glycosyltransferase
MTDAPPPRIALLLATYNGAANLEAQLESFAAQTLRPTWLVVSDDGSTDATRALLAAFAARHPWLALRLVEGPCRGSAQNFLHLLGQVPPEADMAALSDQDDVWLPEKLARGAAAMADLPADLPVLYGGSSWICDAELGNRRPYPLPVRPPGFRHALVQNIAGGNTMMLNRGAIALLAAASREPERIVVHDWWIYQIVSGAGGRVIFDPVPLLLYRQHGGNLIGANDGFRTKYRRLRMLLSGGFRQWNAINIRALSASAHRFTPENRRLLAEFEALRRAGPWGRLRQLKRIGLYRQGLPGRLSLWLAAVLGRI
>NZ_CP012963.1|WP_009565041.1|8077_8641_+|dTDP-4-dehydrorhamnose-3,5-epimerase
MQIEETELPGVLILTPRVFGDARGSFCEAWNRATLQGLGIDLDFVQDNQSISAPVGTVRGLHYQAPPHAQDKLVRVGHGAILDVAVDVRVGSPTYGRWVGVELTAGNARQLLVPKGFLHGFVTREPDTVVLYKTTDVYAPDCDGAVHFADPDLGIDWGIDPASAVLSDKDARAPRFADWTSPFSIEV
>NZ_CP012963.1|WP_011836181.1|8644_9685_+|dTDP-glucose-4,6-dehydratase
MKLIVTGGAGFIGSAVVRKAVADGHHVVNLDCLTYAACLDNLASVAGAPNYVFEKADIRDAEAMARIFATHRPDAVMHLAAESHVDRSIDGPGAFIDTNVRGTYVLLEAARAYWVGQGKPQGFRFHHISTDEVFGTLGETGQFTEETPYAPNSPYSASKAASDHLVRAWGETYGLPYVLTNCSNNYGPFHFPEKLIPVVILKALAGAPIPVYGKGENVRDWLYVEDHADALLTVLARGENHRSYNIGGENEAKNIDIVRKICAILDARRPKATPYADQIAFVTDRPGHDLRYAIDPTRIRTELGWRPSVTLDEGLERTVDWYLANEPWWRALQDRAGVGERLGVKA
>NZ_CP012963.1|WP_011836182.1|9681_10533_+|dTDP-4-dehydrorhamnose-reductase
MILVFGRTGQVARELARQAPDARFLGRDEADLADPEACARAIREAKPDAVINAAAWTAVDRAEEEEAPATVVNGEAPGAMARACAELGIPFVQISTDYVFDGSGTRPWQPGDPVGPLGAYGRSKLAGEEAVRAAGGPHAILRTSWVFSAHGANFVKTMLRLGATRDRLTVVCDQVGGPTPAADIAAACLAMARGLAARPDLSGTYHLSGGPDVSWADFAREIFRQAELDCLVADIASADYPQKAHRPANSRMDCSDLARFGLSRPDWRQGLARVLADLQEVSE
>NZ_CP012963.1|WP_002724812.1|10529_11420_+|glucose-1-phosphate-thymidylyltransferase-RfbA
MSVRKGIILAGGSGTRLYPLTIGVSKQLMPVYDKPMIYYPLSVLMLAGIREIAIITTPQDQEQFRRALGTGAQWGISLTYLVQPRPEGLAQAYTIAEEFLAGSPSCMVLGDNIFFGHGLPDLLALADAKTEGGTVFGYHVADPERYGVVAMDERGRVTQIVEKPKVAPSNYAVTGIYFLDARAPDLVHGIRPSERGELEIVSLLEIYLEEGLLDVQRMGRGFAWLDTGTHASLLDAGNFVRTLQLRQGMQTGCPEEIAFARGWVDAEALTGMAAQLSKNDYGRYLQGLLTDRMMEG
>NZ_CP012963.1|WP_011836183.1|11394_12177_-|sulfotransferase
MRAASPRVRFLVAGAQKCGTTALHRFLSAHPGLFLPAGKELHFFDRPLPDDWSGPEGPLYETAFAQARPDQLCGEATPVYLFHTPSLQRIRAYNPAMRLILLLRDPVLRAYSHWRMERTRGAETLPFPEAIRAGRARVAEDWRTFSYVERGFYGAQLTELERLFPREQRLVLWTDEMQRDHAGTLARIWRFLGCAAPPVPPPPAEIRPLDPAPGLAPLAEEDARYLRSLYAPDIALTEALTGRDLSLWREGALSPPSSGR
>NZ_CP012963.1|WP_011836184.1|12543_13269_-|sulfotransferase
MDRDLPETPALVLGASGGSGTRVAGQLLRAAGGYLGGARNEAGDSLALVAAIEALAARGARLLEGGRPEEADLALWRAALTEHLALHAGEPFWGWKNPRSMFLLPFSVALVPGLRFIHMVRDGRDMALSGNRRQYERHVPEGPGTPADRARFWAESNLRVKRHAEAVLGDRYAILRFEDLCRDPEGCMARLGRQFGLRLEPAGTGIEVRPPDGVGRHRALPAADRAAVEAAAAPAMEAFGY
>NZ_CP012963.1|WP_002724637.1|13470_14307_+|3-deoxy-8-phosphooctulonate-synthase
MTETPTIVTIGDIAIGGGHPIALITGPCQLESLDHARMMAERIAEACAPTGTKFIFKASYDKANRSSLSTARGLGMEKGLEILGRIREEFGVPVLTDVHEPGHCATAAEVCDVLQIPAFLCRQTDLLLAAGETGRAVNVKKGQFLAPWDMKNVADKVASTGNRRILLCERGTSFGYNTLVTDFRGLPTMAATGWPVVFDATHSVQQPGGLGGSSGGQREFAPVLARAACAVGVSALFIETHEDPDRAPSDGPNMIPVDRMGRLIADLCAFDALAKSLA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	NZ_CP030273	Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence	67220-67252	0	1.0
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	CP047033	Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence	60898-60930	0	1.0
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	NC_009040	Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence	21550-21582	0	1.0
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	NZ_CP047039	Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence	60874-60906	0	1.0
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	NZ_CP015213	Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence	104690-104722	0	1.0
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	NZ_CP051470	Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence	19476-19508	0	1.0
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	NZ_CP015290	Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence	3847-3879	0	1.0
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	NC_011960	Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence	72598-72630	2	0.939
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	CP036421	Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence	28105-28137	2	0.939
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	291403-291435	7	0.788
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1573927-1573959	7	0.788
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	558458-558490	7	0.788
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MK864266	Gordonia phage Arri, complete genome	8692-8724	9	0.727
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MN284907	Gordonia phage Fireball, complete genome	8624-8656	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MK864264	Gordonia phage VanDeWege, complete genome	8812-8844	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MH479910	Gordonia phage Danyall, complete genome	8520-8552	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MT639651	Gordonia phage Portcullis, complete genome	8580-8612	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MH479917	Gordonia phage KimmyK, complete genome	8648-8680	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MH669015	Gordonia phage TillyBobJoe, complete genome	8335-8367	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MK814761	Gordonia phage SmokingBunny, complete genome	8499-8531	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	KX557286	Gordonia phage Twister6, complete genome	8431-8463	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MK864267	Gordonia phage Valary, complete genome	8884-8916	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MK967381	Gordonia phage RogerDodger, complete genome	8884-8916	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MT310872	Gordonia phage Evamon, complete genome	8501-8533	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MT521998	Gordonia phage Jambalaya, complete genome	8332-8364	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MK864265	Gordonia phage Barb, complete genome	8648-8680	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	NC_030913	Gordonia phage Wizard, complete genome	8624-8656	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MK305889	Gordonia phage Mutzi, complete genome	8520-8552	10	0.697
NZ_CP012963_1	1.1\|3847\|33\|NZ_CP012963\|CRISPRCasFinder	3847-3879	33	MN010760	Gordonia phage Nubi, complete genome	8521-8553	10	0.697

1. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to NZ_CP030273 (Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence) position: , mismatch: 0, identity: 1.0

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
*********************************

2. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to CP047033 (Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence) position: , mismatch: 0, identity: 1.0

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
*********************************

3. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to NC_009040 (Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence) position: , mismatch: 0, identity: 1.0

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
*********************************

4. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to NZ_CP047039 (Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence) position: , mismatch: 0, identity: 1.0

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
*********************************

5. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to NZ_CP015213 (Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence) position: , mismatch: 0, identity: 1.0

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
*********************************

6. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to NZ_CP051470 (Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence) position: , mismatch: 0, identity: 1.0

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
*********************************

7. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to NZ_CP015290 (Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence) position: , mismatch: 0, identity: 1.0

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
*********************************

8. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to NC_011960 (Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence) position: , mismatch: 2, identity: 0.939

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
tttgcccccgccgtgccgccctgccggcccccg	Protospacer
**************************.*****

9. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to CP036421 (Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.939

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
tttgcccccgccgtgccgccctgccggcccccg	Protospacer
**************************.*****

10. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.788

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
tgttcgcccgccttgccgccctggcgacccggc	Protospacer
* * * ****** ********** ******  *

11. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.788

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
tgttcgcccgccttgccgccctggcgacccggc	Protospacer
* * * ****** ********** ******  *

12. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.788

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
tgttcgcccgccttgccgccctggcgacccggc	Protospacer
* * * ****** ********** ******  *

13. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MK864266 (Gordonia phage Arri, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaaggatct	Protospacer
 ************ .**********.*   .*.

14. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MN284907 (Gordonia phage Fireball, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

15. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MK864264 (Gordonia phage VanDeWege, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

16. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MH479910 (Gordonia phage Danyall, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

17. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MT639651 (Gordonia phage Portcullis, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

18. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MH479917 (Gordonia phage KimmyK, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

19. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MH669015 (Gordonia phage TillyBobJoe, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

20. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MK814761 (Gordonia phage SmokingBunny, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

21. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to KX557286 (Gordonia phage Twister6, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

22. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MK864267 (Gordonia phage Valary, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

23. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MK967381 (Gordonia phage RogerDodger, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

24. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MT310872 (Gordonia phage Evamon, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

25. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MT521998 (Gordonia phage Jambalaya, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

26. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MK864265 (Gordonia phage Barb, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

27. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to NC_030913 (Gordonia phage Wizard, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

28. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MK305889 (Gordonia phage Mutzi, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

29. spacer 1.1|3847|33|NZ_CP012963|CRISPRCasFinder matches to MN010760 (Gordonia phage Nubi, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccgacccccc	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********..   .*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3917 : 14307

Enterobacteria_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050988687.1\|3917_5324_-	AAA family ATPase	A0A0K2FLP4	Brevibacillus_phage	2.1e-06	26.6
WP_002724803.1\|6062_7025_+	replication initiator protein A	A0A0K1Y6J9	Rhodobacter_phage	1.3e-58	39.1
WP_061350900.1\|7075_8014_+	glycosyltransferase	NA	NA	NA	NA
WP_009565041.1\|8077_8641_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	7.7e-32	43.5
WP_011836181.1\|8644_9685_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-91	52.1
WP_011836182.1\|9681_10533_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	3.1e-32	38.5
WP_002724812.1\|10529_11420_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.7e-87	54.9
WP_011836183.1\|11394_12177_-	sulfotransferase	NA	NA	NA	NA
WP_011836184.1\|12543_13269_-	sulfotransferase	NA	NA	NA	NA
WP_002724637.1\|13470_14307_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	6.0e-49	41.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012960

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012960_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012960_1

2605098-2605200

Orphan

Consensus_repeat	Method
CGCGCGCCGATCGGAGCGCGGAGCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012960_1

>merge|NZ_CP012960|1|2605098-2605200|CRISPRCasFinder
CGCGCGCCGATCGGAGCGCGGAGCTTTCACCACGCCGCACAGTCGGACGGGGCAGCCCGGGGACACGGCGGCCACCCGCGCGCTGATCGGAGCGCGGAGCTTT

>NZ_CP012960|1|1|2605098-2605200|CRISPRCasFinder
CGCGCGCCGATCGGAGCGCGGAGCTTT	CACCACGCCGCACAGTCGGACGGGGCAGCCCGGGGACACGGCGGCCACC
CGCGCGCTGATCGGAGCGCGGAGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012960.1\|WP_011338531.1\|2586794_2587787_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235834
NZ_CP012960.1\|WP_011338543.1\|2603386_2604298_+\|ornithine-cyclodeaminase	unknown	unknown	gnl\|CDD\|180421
NZ_CP012960.1\|WP_002721055.1\|2612215_2612821_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP012960.1\|WP_011338550.1\|2613412_2614840_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP012960.1\|WP_011338533.1\|2588258_2590802_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP012960.1\|WP_011338542.1\|2602901_2603390_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|367134
NZ_CP012960.1\|WP_011338544.1\|2604302_2604947_-\|cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|378238
NZ_CP012960.1\|WP_002721024.1\|2585993_2586689_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012960.1\|WP_002721028.1\|2590922_2591459_-\|DUF3576-domain-containing-protein	unknown	unknown	gnl\|CDD\|371898
NZ_CP012960.1\|WP_011338548.1\|2610130_2611060_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|377028
NZ_CP012960.1\|WP_011338530.1\|2584840_2586019_+\|aminoacetone-oxidase-family-FAD-binding-enzyme	unknown	unknown	gnl\|CDD\|274820
NZ_CP012960.1\|WP_017139959.1\|2608924_2610034_-\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_CP012960.1\|WP_011338535.1\|2591742_2592735_+\|porin	unknown	unknown	gnl\|CDD\|379292
NZ_CP012960.1\|WP_011338545.1\|2605321_2606572_+\|BtaA-family-protein	unknown	unknown	gnl\|CDD\|378757
NZ_CP012960.1\|WP_002721054.1\|2611140_2611983_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012960.1\|WP_011338532.1\|2587783_2588272_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227755
NZ_CP012960.1\|WP_017139961.1\|2615086_2615626_+\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377411
NZ_CP012960.1\|WP_011338546.1\|2606568_2607201_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225136
NZ_CP012960.1\|WP_002721056.1\|2612824_2613349_-\|DUF308-domain-containing-protein	unknown	unknown	gnl\|CDD\|225786
NZ_CP012960.1\|WP_002721051.1\|2607606_2608560_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769

Protein	Function_ID	Function_description	E-value
NZ_CP012960.1\|WP_011338531.1\|2586794_2587787_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235834	PRK06585, holA, DNA polymerase III subunit delta; Reviewed.	2.35411e-42
NZ_CP012960.1\|WP_011338543.1\|2603386_2604298_+\|ornithine-cyclodeaminase	gnl\|CDD\|180421	PRK06141, PRK06141, ornithine cyclodeaminase family protein.	1.79506e-84
NZ_CP012960.1\|WP_002721055.1\|2612215_2612821_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	6.37864e-137
NZ_CP012960.1\|WP_011338550.1\|2613412_2614840_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP012960.1\|WP_011338533.1\|2588258_2590802_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP012960.1\|WP_011338544.1\|2604302_2604947_-\|cytochrome-c-oxidase-assembly-protein	gnl\|CDD\|378238	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG). Members of this family are the CtaG protein required for assembly of active cytochrome c oxidase of the caa3 type, as found in Bacillus subtilis.	1.62038e-18
NZ_CP012960.1\|WP_011338542.1\|2602901_2603390_+\|YaiI/YqxD-family-protein	gnl\|CDD\|367134	pfam02639, DUF188, Uncharacterized BCR, YaiI/YqxD family COG1671.	1.39912e-56
NZ_CP012960.1\|WP_002721028.1\|2590922_2591459_-\|DUF3576-domain-containing-protein	gnl\|CDD\|371898	pfam12100, DUF3576, Domain of unknown function (DUF3576). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 100 amino acids in length. This domain has a single completely conserved residue G that may be functionally important.	1.36347e-38
NZ_CP012960.1\|WP_011338548.1\|2610130_2611060_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	8.44086e-09
NZ_CP012960.1\|WP_011338530.1\|2584840_2586019_+\|aminoacetone-oxidase-family-FAD-binding-enzyme	gnl\|CDD\|274820	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.	2.0841e-154
NZ_CP012960.1\|WP_017139959.1\|2608924_2610034_-\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP012960.1\|WP_011338535.1\|2591742_2592735_+\|porin	gnl\|CDD\|379292	pfam13609, Porin_4, Gram-negative porin.	1.1689e-30
NZ_CP012960.1\|WP_011338545.1\|2605321_2606572_+\|BtaA-family-protein	gnl\|CDD\|378757	pfam11899, DUF3419, Protein of unknown function (DUF3419). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.	8.65185e-145
NZ_CP012960.1\|WP_011338532.1\|2587783_2588272_-\|hypothetical-protein	gnl\|CDD\|227755	COG5468, COG5468, Predicted secreted (periplasmic) protein [Function unknown].	3.51035e-06
NZ_CP012960.1\|WP_017139961.1\|2615086_2615626_+\|heme-binding-protein	gnl\|CDD\|377411	pfam04832, SOUL, SOUL heme-binding protein. This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologs.	1.92741e-52
NZ_CP012960.1\|WP_011338546.1\|2606568_2607201_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	3.4864e-21
NZ_CP012960.1\|WP_002721056.1\|2612824_2613349_-\|DUF308-domain-containing-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	1.12913e-12
NZ_CP012960.1\|WP_002721051.1\|2607606_2608560_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	7.08622e-18

>NZ_CP012960.1|WP_011338544.1|2604302_2604947_-|cytochrome-c-oxidase-assembly-protein
MSGTQSETGRQLAPGLLSLGVGLAALAGLWGGPLPDLARVSFVWHMMLHLGVILGAAPLIALGLARLAPLRTAWPVLFAGAASLLELAVVWGWHAPRLHEAAALDPTLFRIQQATFLGAGVLVWLPGLAPGRAAAGAGLLAMLFSLMHMTMLGVLLTLSPRLLYAPEICGTAFGLAPLDTQRLGGAMMAVAGLGPYLVGAAVFTMRLTREGPED
>NZ_CP012960.1|WP_011338543.1|2603386_2604298_+|ornithine-cyclodeaminase
MSIEIIGPEAEAHLSWDGLTTALTQGHKLPRAEVADIFLYRGKDTVLSRAAWIDGLGQLVKTATIFPGNGAAGKPTVNGAVTLYSDRDGTLEALVDFHLVTKWKTAGDSLLAAKRLARRDSREILLVGAGNVARSMIEAYGSHFPDARFTVWNRSADKARAMEGPQVRATEDLEAAVRAADIICTATMSQEPVVKGEWLKPGTHLDLIGAYRPDMREVDDEALRRATVFVDSRKTTIGHIGEIQDPLDRGILTEADIRADYYDLASGLYARRSDEEITLAKNGGGAHLDLMTASYIAAMWRQR
>NZ_CP012960.1|WP_011338542.1|2602901_2603390_+|YaiI/YqxD-family-protein
MTDLYIDADACPVKAEAERVAVRHGVRMFLVSNGGIRPPAHPLVESIFVPEGPDVADMWIADRARTGDVVVTSDIPLAAKVVAAGALVVKPNGETLTQANIGNALATRDLMADLRSADPFRQGGGRPFSKADRSRFLDALERAMRKAQEAGRSASGGNEAGS
>NZ_CP012960.1|WP_011338535.1|2591742_2592735_+|porin
MKQILLATTALVMTAGVAAAEISFSGYAEMGVVGGGDDAPARAGHAAGGQTEFHNDFNLIVTMTSETDTGLAFGASVEISKDEGDSNGNFAADNEAAFISGAFGTLTMGEIDGAMDWAMTENVGNPGTIGDDETTHAGYFGAYGDGKYDNQIARYEYSFGDFGVAISAELDDTDTNGDGYAIGAKYKGDFGGFGMGFGLAYQTFETDVLVGLGSQEAALVGGDVELLGASVNADFNNGFVAGLAYTDISSDAQDGNHLGLSAGFTTGAFQIGANYGVFDMDVQDKVKGWGVAAAYDLGGGLKLHGGYGDSDIDGVDGDFETYSVGLSMSF
>NZ_CP012960.1|WP_002721028.1|2590922_2591459_-|DUF3576-domain-containing-protein
MTFLSLARAALPVGLALSLSACGGLGGGDASSGDRQIEAGAAQRQAEIAERNAGATVAGTGSTRSSLFDLFGSKDDPNTKVEVNKYIWNAALEVLNFLPVQAVDPFTGVISTGYGVPPGGGRAYRATIYVQDPALDARSLKVALQGQGGGPVSAETQRAVEDAILTRARQLRLRDSRL
>NZ_CP012960.1|WP_011338533.1|2588258_2590802_-|leucine--tRNA-ligase
MSRYDPAATESRWQAAWDAAGVFTARHDPARPKYYVLEMFPYPSGRIHMGHVRNYTMGDVVARQKAAAGFSVLHPMGWDAFGMPAENAAMERGGHPKDWTYGNIADMRAQMKPLGLSIDWSREFATCDPEYYGQQQAMFIDMMEAGLVYRKNAVVNWDPVDMTVLANEQVIDGKGWRSGAPVVRRELTQWFFRISDYAGELLEALDTLKDWPEKVRLMQANWIGQSRGLQFAFSMAGAPEGFDRLEVYTTRPDTLMGASFAAISPDHPLARHLERHDPEVAEFVAECRRVGTSEEALEKAEKKGFDTGLRVRHPFDAAWELPVYIANFILMDYGTGAIFGCPAHDQRDFEFATKYGLPIRPVFLPEGCEETALAEAFVPMKSERVHYIRGFAGAEVQTGEEGVAAAIAFCESQGVGRGVTNYRLRDWGISRQRYWGCPIPVIHCETCGVVPEAKENLPVRLPDDVSFDVPGNPLDRHPTWRDCTCPKCGAKARRETDTMDTFVDSSWYYARFTAPRAATPTDAEEADYWMNVDQYIGGIEHAILHLLYSRFFARAMQKTGHLPAKAIEPFNALFTQGMVTHEIYLTRDAAGRPVYHLPEDVTDGKLADGTPVEIIPSAKMSKSKKNVVDPMNIIRQFGADTARWFVMSDSPPERDVEWTASGAEAASKHLHRVWRLADEISRADGEANAEDGALDKATARAIAEVTQGVEGFAFNKAIAKLYEFTNTLSRSGAGAEAKKRAMRTMAQLMSPMVPHLAEEVWAMLGGEGLVAQAAWPKADPALLIDDTVTLPIQVNGKRRGEITVPKEMAASEVEKLVLADEAVQRALGGAAPKKLIVVPGRIVNVVI
>NZ_CP012960.1|WP_011338532.1|2587783_2588272_-|hypothetical-protein
MSSSDRRTFLFAALALAGCGFRPAYGPGGPAETLQGAIRVADPVDKNGFDLVERLEERIGRPEAPRFDLAYRISTSIDSVGITTANSITRYNLTGRIAFTVTSRATGEVVESGTVTNFTSWSATGSTVAALVAEEDANYRLMRILADQIVTQLIATSGRWLA
>NZ_CP012960.1|WP_011338531.1|2586794_2587787_-|DNA-polymerase-III-subunit-delta
MILRGAEAVRYLAKPDPSRAGLLIFGQDSMRVALKRQEAVLGLIGPEGAAEMRLTRLPASDLRRDPAALMDAMTAKGFFEGPRAVLVEEAADGLTALIGDVLKEWRPGDAQVVVTAGGLTGRSSLKKLFEAHPSAVCIGLYDDPPTREEVDTMLRQAGLGQIEPQAMAGLTALARDLDPGDVRQTVEKLALYKLGDPAPLSAADVAEMAPVSIEAGVDEVIHAVAEGRRTEVSPLVRRLEAQGVTAVALCIGAMRHFRSLHRLAAGADPGRGGFNPRQERMQRQARQWGVNRLEEAMALLVETDLTLRSASRAPAMAVMERALIRLCTVR
>NZ_CP012960.1|WP_002721024.1|2585993_2586689_-|hypothetical-protein
MNRLSLLALVAALSASPAAAQMTGATLDFGHSFFTEDSDISKTSLGGSAEFGFGTSFALQGDLGYSRLHGVHENATAAALHGMVYVNPETAIGAFYGIEDLAGDSVDFYGFEVGQKSDLFDVEAYVGRADNSGLTGSMMGLEGRVLMANGFGVGGKVNHLDVEGLDTTRFGLTGDYTLPNGLALTAEIGGVNADDLGLDGTEPYVGIGARFDFGRGAMFSRRSLSAVAPGL
>NZ_CP012960.1|WP_011338530.1|2584840_2586019_+|aminoacetone-oxidase-family-FAD-binding-enzyme
MDALVIGGGPAGLMAAEELARAGLRTVICETKPSVGRKLLMAGKSGLNITKDEAPEPFLARYAEAADWLAPMIGSFGPREVQDWCRALGQPVFTGSSGRVFPQAMKASPLLRAWLARLAGLGVEIRTRWRWEGFGAGFRFATPEGGIELAPQVTVLALGGASWSRLGSDGAWAPWLAARGVEIAPFRPANIGFRIDWTPHMARHFGTPVKGVALLVGERRERGEFVLSERGLEGGGIYAVSRALREGAGLALDLLPDLSEEEVAARLSRGKPGESLANRLRKLGLSPALVALVQEFARPLPAGAALACRLKALPVPLAGPRPLDEAISTAGGIARAALTEDLELKALPGVFACGEMLDWEAPTGGYLLTGCLATGRHAGRAAARVTGPARPR
>NZ_CP012960.1|WP_011338545.1|2605321_2606572_+|BtaA-family-protein
MTQFALTHLPAPPVARQIGAAVHRTSLLSAEGLMERMFSRLFHGLVYPQIWEDPAVDMAALAIRPGDRLVAIASGGCNVLSYLTQGPGSILAVDLSPAHVALGRLKLAAARTLPDHAAFFDLFGRADLPGNAALYDRHIAPALDGRSRRYWEARSPFGRRIQLFERGFYRHGALGRFIGAAHTLARAAGTDLRGFLDCPDIEAQRSFFYAHIGPLFEAPVVQALARRPAALFGLGIPPAQYALLAGDGDGDVLPVLRQRLHRLLCDFPLRENYFAFQAIARRYPRPGEGALPPYLEPTAFETLRENAGRVQIENRSLTEALAAEPEESIHGFTLLDAQDWMTDAQLTALWRQVTRTAAPGARVIFRTGGAADLLPGRVPEEILGHWRADRAAGQAGHAADRSAIYGGFHLYRRRDA
>NZ_CP012960.1|WP_011338546.1|2606568_2607201_+|methyltransferase-domain-containing-protein
MTDATHAALMDATYRHQRRIYDVTRRHFLLGRDRLIAELDPPPGARVLEIACGTGRNLDLIGRRWPGCRLSGLDISQEMLASARARLGRRATLALGDATRFEALPLFGTDRFERIVLSYALSMIPDWREALREAALHLVPGGRLHVVDFGDQAGLPGWARAGLRGWIGRFHVTPRDDLGTALGETALGIGGYAEYRSLGGGYAILGTLTR
>NZ_CP012960.1|WP_002721051.1|2607606_2608560_-|DMT-family-transporter
MAKSNTRGALLALLAFAIYATHDVVVKVLGRDYTAVQILFFATLLGFPLASMMLMRDRADGNLRPRHPWWVLLRTCCIVTTGLCAFYAFSVLPLAQTYAILFTMPLLVTLLAIPLLGETIGLHRGAAIATGLLGVLIVLRPGAEPLSLGHAAALLAAVTSSLGSVIVRKIGQDERSVVLLLYPMVANFFVLGAALPFVYRPMPVEHLGMMGIIAAFSFVAMLLTITAYRMAEAVIVAPMQYSQMVWAAIFGWLIFGERSDVWTWVGAGVIIASGLYIVGRESRRNVSENRPASQTRLRPEVGLMPRLLRRRETRDTP
>NZ_CP012960.1|WP_017139959.1|2608924_2610034_-|3-isopropylmalate-dehydrogenase
MANPSLLILAGDGIGPEVMAEVKRIIGWFGEKRGVSFDVSEDLVGGAAYDAHGTPLADETMARAQEVDAVLLGAVGGPKYDVLDFSVKPERGLLRLRKEMDLYANLRPAQCFDALADFSSLKRDIVAGLDIMIVRELTSGVYFGEPRGIFPDNEGGRFGVNTQRYTTEEIRRVARSAFELARRRNNRVCSMEKANVMESGILWREEVQWVHDNEYPDVELSHMYADNGAMQLVRWPRQFDVIVTDNLFGDILSDCAAMLTGSLGMLPSASLGAPMANGRPKALYEPVHGSAPDIAGQGKANPIACILSFAMALRYSFDMGEEATRLEKAVETVLADGVRTADLMGPEGGTPVSTSGMGDAVLAALDASL
>NZ_CP012960.1|WP_011338548.1|2610130_2611060_-|endonuclease/exonuclease/phosphatase-family-protein
MDLERAGPGLLLRDIRAGKDPQILAVRRMIEALRADVLFLTGVDYDADLLAARALAGDLYPHLLALRPNVGRPTGIDLDGDGRLGGPGDAQGWGRFGGQGGMVLLSRLPLGLPRDFSDLLWADLPEANLPPMPPEARAVQRLASVGAWEVPLPRTGGPALKLLLWSATPPVFDGPEDRNGRRAGDEALFWARLLDGRLPFPAPEGPVLLMGKANIDPLAGDGPRAAIAALLAHPALQDPAPRGPDGSRATADFRADDGPGLLRTDYILPARGLPVTASGVLWPPPGDPLAAVAAQASRHRPVWVELDLP
>NZ_CP012960.1|WP_002721054.1|2611140_2611983_-|hypothetical-protein
MNVFSRLSGALLRASLVVLLLALPSVLLPGVGADGQQMVALAALFGGVLTLVEYNATYPGLVEFRDAPPFNRLRFALLLVMVLTLTLMQREASDPSALTALSARAAGAVGTAMDFAYSPVRLATLMLSDRATPEQTAVLRNAAGISYLIATAAVAMFVAVIRLNRWPSRNLAFNVWVNLPTFEATAGGDVVQRLLRDARFNLALGFLLPFLIPIAVKIGTSGLDPLTLASPQALVWITVAWAFLPASLLMRGVGMARIAEMIREKRRTGEVFGTRGLAPV
>NZ_CP012960.1|WP_002721055.1|2612215_2612821_-|3-isopropylmalate-dehydratase-small-subunit
MQEFTKVTGVAAPMPLVNIDTDMIIPKQFLKTIQRSGLGKNLFDEMRYNPDGSEIPEFVLNQPAYRDAQIIVAGDNFGCGSSREHAPWALLDFGIRCVISTSFADIFYNNCFKNGILPIVMPPEVVEVLMEDARRGANARMTVDLEAQTVTTSDGQSFPFQVDSFRRHCLMNGLDDIGLTLEKAASIDGFERDLATLRPWV
>NZ_CP012960.1|WP_002721056.1|2612824_2613349_-|DUF308-domain-containing-protein
MKGTSSLIVSGILALLGGIAALAFPLPVSLAVTVLAGCVFVASGAFGLWAAFSDRGMPSRGAAAFFSLVSLVAGVWMLANPLAGMVSLTLMLGALFLVSGVVRLGLSLATWRGTVMFWLMALSGLISAGLGLFILLRLPEASLVLLGTLVAVELIVMGATLVAMGFALRKSGNP
>NZ_CP012960.1|WP_011338550.1|2613412_2614840_-|3-isopropylmalate-dehydratase-large-subunit
MTAPRTLYDKIWDDHVVHQSEDGTCLLYIDRHLVHEVTSPQAFEGLRMTGRKVRAPEKTIAVPDHNVPTTEGRDTKIDNEESRIQVEALDKNARDFGINYYPVSDIRQGIVHIVGPEQGWTLPGMTVVCGDSHTATHGAFGALAHGIGTSEVEHVLATQTLIQKKSKNMKVEITGSLRPGVTAKDITLSVIGLTGTAGGTGYVIEYCGQAIRELSMEGRMTVCNMAIEGGARAGLIAPDEKTFAYVMGRPHAPKGAAWEAALAYWKTLFTDEGAQFDKVVTIRGEDIAPVVTWGTSPEDVLPITATVPAPEDFTGGKVEAARRSLEYMGLTPGQKLTDIKIDTVFIGSCTNGRIEDLRAAAEILKGKKVAPGMRAMVVPGSGLVRAQAEEEGLAQIFIDAGFEWRLAGCSMCLAMNPDQLSPGERCASTSNRNFEGRQGRNGRTHLVSPGMAAAAAITGHLTDVRDLMMAPAEPA
>NZ_CP012960.1|WP_017139961.1|2615086_2615626_+|heme-binding-protein
MNGAVDHKGYEQPTYDLEFAETATEIRRYGPYLVAEVTMAGDRSTAITRGFRVLARYIFGGNAESRRIEMTVPVSQLPAGEDLWTVRFTMPAVRSASLLPAPKDSRIRFVTVPPSRQAVRRFSGWPTDHALRRQAEGLAHWIAERGLPKREGPYFYFYDSPMTLPWQRRNEVAFGLGEG

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Crispr_ID: NZ_CP012960_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012960_2

2872591-2872783

Orphan

Consensus_repeat	Method
ACGACACGCTCTCGGGCGGCGCGGGCGACGA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP012960_2

>merge|NZ_CP012960|2|2872591-2872783|PILER-CR
ACGACACGCTCTCGGGCGGGGCGGGGCAGGATCTTCTGTTCGGCGGCGCCGGAGACGACCTTCTTGCAGGCGGCGCGGGCGACGACACGATGGAGGGGGGCAGCGGGAACGATGCCCTTCTGGGCGGGGCCGGCAACGACGCGCTGGACGGTGGCGAGGGAGACGACACGCTCTCGGGCGACGCGGGCGACGA

>NZ_CP012960|2|1|2872591-2872783|PILER-CR
ACGACACGCTCTCGGGCGGGGCGGGGCAGGA	TCTTCTGTTCGGCGGCGCCGGAGACGACCTTCTTGCAGGCGGC
GCGGGCGACGACACGATGGAGGGGGGCAGCG	GGAACGATGCCCTTCTGGGCGGGGCCGGCAACGACGCGCTGGACGGTGGCGAGGGAGACGACACGCTCTCGGGCGAC
GCGGGCGACGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012960.1\|WP_002721508.1\|2867137_2867650_+\|DUF1643-domain-containing-protein	unknown	unknown	gnl\|CDD\|377919
NZ_CP012960.1\|WP_002721512.1\|2868340_2870491_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP012960.1\|WP_002721510.1\|2867890_2868160_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP012960.1\|WP_011338732.1\|2881697_2882999_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP012960.1\|WP_023003735.1\|2884477_2887264_-\|error-prone-DNA-polymerase	unknown	unknown	gnl\|CDD\|235553
NZ_CP012960.1\|WP_002721525.1\|2883068_2883875_+\|CatB-related-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
NZ_CP012960.1\|WP_011338728.1\|2875294_2876536_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340850
NZ_CP012960.1\|WP_011338720.1\|2862272_2863082_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_CP012960.1\|WP_011338725.1\|2870813_2872127_-\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NZ_CP012960.1\|WP_011338729.1\|2876532_2878713_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012960.1\|WP_011338724.1\|2865662_2866739_+\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223110
NZ_CP012960.1\|WP_011338735.1\|2887344_2888598_-\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|372592
NZ_CP012960.1\|WP_011338731.1\|2879979_2881701_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP012960.1\|WP_011338719.1\|2861871_2862060_+\|DUF1674-domain-containing-protein	unknown	unknown	gnl\|CDD\|227795
NZ_CP012960.1\|WP_017139984.1\|2873249_2875295_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012960.1\|WP_011338733.1\|2883878_2884466_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012960.1\|WP_011338730.1\|2878709_2879987_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340850
NZ_CP012960.1\|WP_172825289.1\|2863328_2863742_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP012960.1\|WP_011338723.1\|2864536_2865442_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235442
NZ_CP012960.1\|WP_011338722.1\|2863731_2864469_+\|phosphodiester-glycosidase-family-protein	unknown	unknown	gnl\|CDD\|226222

Protein	Function_ID	Function_description	E-value
NZ_CP012960.1\|WP_002721508.1\|2867137_2867650_+\|DUF1643-domain-containing-protein	gnl\|CDD\|377919	pfam07799, DUF1643, Protein of unknown function (DUF1643). The members of this family are all sequences found within hypothetical proteins expressed by various bacterial species. The region concerned is approximately 150 residues long.	1.88969e-65
NZ_CP012960.1\|WP_002721512.1\|2868340_2870491_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP012960.1\|WP_002721510.1\|2867890_2868160_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.62449e-54
NZ_CP012960.1\|WP_023003735.1\|2884477_2887264_-\|error-prone-DNA-polymerase	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
NZ_CP012960.1\|WP_002721525.1\|2883068_2883875_+\|CatB-related-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	3.04702e-49
NZ_CP012960.1\|WP_011338728.1\|2875294_2876536_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340850	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).	2.67569e-79
NZ_CP012960.1\|WP_011338720.1\|2862272_2863082_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	3.96259e-122
NZ_CP012960.1\|WP_011338725.1\|2870813_2872127_-\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.50475e-24
NZ_CP012960.1\|WP_011338735.1\|2887344_2888598_-\|lytic-murein-transglycosylase	gnl\|CDD\|372592	pfam13406, SLT_2, Transglycosylase SLT domain. This family is related to the SLT domain pfam01464.	4.42199e-145
NZ_CP012960.1\|WP_011338724.1\|2865662_2866739_+\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	3.44504e-130
NZ_CP012960.1\|WP_011338731.1\|2879979_2881701_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP012960.1\|WP_011338719.1\|2861871_2862060_+\|DUF1674-domain-containing-protein	gnl\|CDD\|227795	COG5508, COG5508, Uncharacterized conserved small protein [Function unknown].	2.33369e-16
NZ_CP012960.1\|WP_011338732.1\|2881697_2882999_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	5.93734e-77
NZ_CP012960.1\|WP_011338730.1\|2878709_2879987_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340850	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).	1.00454e-121
NZ_CP012960.1\|WP_172825289.1\|2863328_2863742_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.22605e-38
NZ_CP012960.1\|WP_011338723.1\|2864536_2865442_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235442	PRK05389, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP012960.1\|WP_011338722.1\|2863731_2864469_+\|phosphodiester-glycosidase-family-protein	gnl\|CDD\|226222	COG3698, COG3698, Predicted periplasmic protein [Function unknown].	2.6197e-83

>NZ_CP012960.1|WP_011338725.1|2870813_2872127_-|calcium-binding-protein
MELAVTTTTLPWAEPPGWLGSFFATGLRFESALIAPPWGALAMGSCGRDLLIASPFGSSLPGGPEGDVLVGLWGNDQLYGNGGNDLVRGGGGADILTGGTGNDLLAGGAGNDSLHGGTGANLLIGGAGDDLLDSRWSTDPDRGGLSFETWRAAKIGTGDEMHGGDGNDRIEASFGNDTLTGDAGDDVIRGQDGDDQLEGGEGQDTLMGDAGADVLSGGEGDDSLDGGLGDDRLDGGEGSDRLIGGNGNDVMDGGAARDVLFGGYGDDQITAGEGDDWVDGGGGDDLIDLGAGDDFVAAIEDLGRGDDVIFGGEGNDTMLGGRGCDQIDGGEGADVLNGGAGDDFLTGGAGADAFQMRSAHGIDTIADFSSEDVLTITRNINGIGGADGLVSVEELTGRIEDLGSDCFLDLGGGNGAMFLGITADELGGLLPAHLEYL
>NZ_CP012960.1|WP_002721512.1|2868340_2870491_+|polyribonucleotide-nucleotidyltransferase
MFNVTKKSIEWGGETLTLETGKVARQADGSVIATLGETSVMANVTFAKAAKPGQDFFPLTVHYQERYYAAGKVPGGFFKREARPSEKETLTSRLIDRPIRPLFVDGFKNEVLLIVTVLSHDLVNEPDIVAMIAASAALTISGVPFMGPIGAARVGFAGGEYVLNPDVDDMQKLRENPEQRLDLVIAGTKDAVMMVESEAYELSEAEMLGAVKFGHEAMQPVIDMIIDFAEEAAHEPFDFSPPDYAALYAKVKSLGETQMRAAFAIREKQDRVNAIDAARAAIKAQLSEAELADENLGTAFKKLESSILRGDIINGGARIDGRDTKTVRPIISETSVLPRTHGSALFTRGETQALVVTTLGTGEDEQIIDALHGNSRSNFLLHYNFPPYSVGEVGRFGPPGRREIGHGKLAWRALQAVLPAATDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGKWAVLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEQALAQAKDGRMHILGEMSKALSSANSFSAYAPKIETLTIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGVIKIASNDQAAIKKAYDMIWSIVAEPEEGQIYTGKVVKLVDFGAFVNFFGKRDGLVHVSQIANKRLTHPNEVLKEGQEVKVKLLGFDERGKVRLGMKMVDQETGQEIQPEKKEKEEAGEA
>NZ_CP012960.1|WP_002721510.1|2867890_2868160_+|30S-ribosomal-protein-S15
MSITVEEKARLIKEYATKEGDTGSPEVQVAVLSSRIATLTEHFKAHKKDNHSRRGLLMMVAQRRKLLDYLKKKDEGRYTALIARLGLRR
>NZ_CP012960.1|WP_002721508.1|2867137_2867650_+|DUF1643-domain-containing-protein
MITRSFVKGDAPSTAVYSDCERYRYLLTRVWDPEGTKALFVMLNPSTATEFQNDPTVERCERRARTLGFGAFRVCNIFAWRDTDPKKMRAAPDPVGNPENDEAIAHSAPWADRIVCAWGAHGAFLDRGRQVEALLRATGLPLHHLGLNRDGQPKHPLYIGYDQQPILWDA
>NZ_CP012960.1|WP_011338724.1|2865662_2866739_+|pyridoxal-phosphate-dependent-enzyme
MDAQKIRTTEGRGRLYDSVLDTVGNTPVIRINNLSPEGVTIYVKAEFFNPAASVKDRLALNIIEAAERSGKLKPGMTVVEATSGNTGIGLAMVCAQKGYPLVITMSEAFSVERRRLMRLLGAKVVLTPRGGKGFGMYRKAQELAEANGWFLASQFETDANADIHEATTAREIVADFAGERLDWFVTGYGTGGTVTGVARVLRRERPEVKIVLSEPANAQLVASGVPQDRNADGTAASGHPAFEAHPIQGWTPDFIPKVLQEGLDAGAYDELIPVAGEDGMKWARELAAKEGILTGVSGGSTFAVARQVAERAPKGSVILAMLPDTGERYMSTPLFQAIGEDMNEEEKALSASTPSFQL
>NZ_CP012960.1|WP_011338723.1|2864536_2865442_+|tRNA-pseudouridine(55)-synthase-TruB
MGRTRKGRAISGWLVVDKPAGMTSTAVVNKVRWALEAQKAGHAGTLDPDATGVLAVALGEATKTVPYITDALKCYRFMVRLGLSTRTDDASGEVIATSEARPTDAEIEAALAAFRGEIQQVPPQFSAVKVEGERAYDLARDGERLDLAARPLWVESLEILSRPDADHVELEMVCGKGGYVRSIARDLGEALGCHGHVAWLRRTWSGPFEAEDGISVATIDELARSEALLSHVLPLAKGLADLPELPATPEGAARLRCGNPGMVIASDVEFGEEAWASFQGQPVAVGIYKSGELHPSRVFNL
>NZ_CP012960.1|WP_011338722.1|2863731_2864469_+|phosphodiester-glycosidase-family-protein
MRTRLLAILLAVWPAACATAEPACRDLTFEDTRYSLCEAQAGDDIRIFQTAPDGRPYGSFERINSALEGEGRQLAFAMNAGMYHADRRPVGLLIEEEVERAPLVTSAGPGNFGLLPNGVFCVGDGFRVIESRAFAAERPTCRHASQSGPMLVIGGELHPRFLVDSDSRYIRNGVGVSADGRRAVFAISNRPVTFHEFGRLFRDELGLPEALYFDGSISRLYDRGARRSDWGTPMGPIVGLVVPKP
>NZ_CP012960.1|WP_172825289.1|2863328_2863742_+|30S-ribosome-binding-factor-RbfA
MAHRSHTGTGPSQRQLRVGELIRRTLADVLNRGEIHDPELNRLSITVGEVRCSPDLKVATVHVMPLGGKDVEEAISLLSKHRGELRHHITRQMTLKYAPDLRFRPDETFDRLDETRRLFSDKTVMRDIRGGGEADED
>NZ_CP012960.1|WP_011338720.1|2862272_2863082_-|4-hydroxy-tetrahydrodipicolinate-reductase
MSDLPGIVVTGASGRMGQMLMKTVLASGKARLVGAVERPGSDWVGRDAGAAMGGAAVGVTVTDDPLAAFAQAQAVIDFTAPEATVQFAELAAQARAVHVIGTTGLEPAHLERLAWAAHHAVIVRAGNMSLGVNLLTRLTQKVAEALDEDWDIEVVEAHHRMKVDAPSGTALMLGEAAARGRGVDLAQARVSGRDGITGPRAPGSIGFSAIRGGDIVGEHDVIFAAAGERITLRHVATDRAIFARGALKAALWGQDRRPGQYDMMDVLGL
>NZ_CP012960.1|WP_011338719.1|2861871_2862060_+|DUF1674-domain-containing-protein
MRDMTEETRKDLPPEALRALAEAEERRRRAKALDLPKEIGGRNGPEPVRFGDWEKKGIAIDF
>NZ_CP012960.1|WP_017139984.1|2873249_2875295_+|hypothetical-protein
MNMRPDAFGEARAPAIACPPRPLDELRIVPLSTGLAAIYLDAPPAGGRRPRLAVTLDGRPVPSPSLSAALPLERGGLRHLVLFTQDMPELLARDLLLTLDGVPRAEARSEWLQPPLRPLPALVEGLAASGRTRFLKMLLTTAASLFSGHGAELAALAQRMLDLCAVPVARPLGAAAFGAGHAIRSHAWAEPPAPGAPVVALGRQIGRLAGCDARSDGGLLHLHLPPAARAEGDLVIFTPDPVRLPAPNKAAAPMTAWLNGRSPAIRAWALGRVRSAAAGDPAAQALLAEMQRPDLPVRLAVRSLCVAPGGLLYAFRLEDPERLVRTLRLEIAGRHLDLDLHRGPAGTGLCAGFAPLEAEAAPCRIQMVLGSGRITTMATVQPAAFDGSEPDGFAEVWQAWHRISGPPEVNPARVLAAIRSARAPRRIPVLVQRFGSPRTGRIALIAPAGAHPDLISARAAAVGAGGWQAEILLTLPEGPAAARMRDAAAAAAALHDLPHRLVLHDARAHPAEVLRAAAALIEGPLLLLGATVLPATPGWLEDWLRHLEETPALVTAGAVLDHEGAVWEGPLDLGAEGLLRPLDGLPARRLAGTSTSFPSPELAGLSRAGVMRLLASATGHADLAPALAELAAADRAAGTASPFRVSHPFRRFGGTAHPTGFAEALRGEELRRQALPAAEGL
>NZ_CP012960.1|WP_011338728.1|2875294_2876536_+|glycosyltransferase-family-4-protein
MALRILQIAHDHPDWTSGGTEIVAHDLHRALSRRGLDSRFLAAATSLQRPEAMAGSLGHLGEDMVLRTGGYDRFLMKRHDGLRWLESVRRLLTDAAPDVVHLHGLDRIGAEILPALRRFAPAARIVMTLHDYQIICPNEGLLLTRPDGSRCRGARPDSCRACFPELGADRHALRKTYLATLLQGVDCFLAPSRFLKDRFLDWGLPATKLQLMPNAVAPLALMQDKPRVRRDRFAFFGTLALHKGVLTLLEAAAQLKAEGAELRLAFHGGLRHPEPAFRTAFETALAAARPLAQHPGPYDRAALASRMADVDWVVVPSLWWENAPLVILEAQAAGRPVIASGIGGMAEMVKDSETGLLVPPGDAAALAEALRTAAGDADLWARLAAAQPRTSHERFVDAHLDLYRTLLEGRHAA
>NZ_CP012960.1|WP_011338729.1|2876532_2878713_+|hypothetical-protein
MTPADGSFLLPGSATVAEVRLSLVLPGGRSLLGLTSTEDLPRAGHAHWSGGQAAWQAEVWAHHAGFAGLALVEAALCERATLRGADGQAARIETPRRIEIAPEALAEFVREAGLMPREVLAFLLRALLADPALPPAEARAHRAFAAGFLQAAALPDGFIEILATPETDGLFAQGWAMSLGTGRSRIAKLDGDLSFCEAEIAAFARNDILPPGQGIALYCRDWRGQDHEAVQALIFDTEGEFRRLELVRGSVQHLSGSVASAHVARMLPRLSGPESSRRALRRICRPRYPGSDTLSATTLPIAAAFEAIYQAPDGGLLAMGWLLDPLSRVERVILKSDANLYAPLQDRWHAMPRPDLHEGFARDPRFANLLDPRDTMHGFVAYAPASRAKVEGAEVYLELVLDDNSCLFRPIAITPLAGRERLPALLAPISPEDPALGPLVERVLAPFLAGLPATPPRAIARRRATVPLGAEAPPRDIAAVMPFRTLAQLQPVFALLSGTPEAAALDLTLVSTSRAAQGLAERLDEAFRFYGLSGRLLLVPESESLLARMESGIAVSRGSHLLLWEPSALPSSSNWLARLLREAQWAQPPGLVSPRLVYEDGSICFGGGEEHGAGAQTICPQLGYPAAWLAQGRPRRTGFGAAEIALVGRAALEAAGGLTGRLFGDRMAHRDLADRLHATGSGTWCSGSVTFWALQEPSDRNDSFTTLMAKVDGALIAARARERLGP
>NZ_CP012960.1|WP_011338730.1|2878709_2879987_+|glycosyltransferase-family-4-protein
MKALVLSHAHPAFSIGGAQVASHNLFTGLKSLPGWQAHYMAGVGPPVARHDATPLMSLGQAPDETLFWTGDYDWFHLGTTDLDGLMRHFERFLSDLRPDVVNFHHVMGFGIQAIASVRRALGPVPIVMTLHEYLPICAHHGQMIKARSHSLCLRASASDCGLCFPELGAAAMKRRELFIKSFFDRVDAFVSPSRFLLTRFEDWGLPRQKLVMIENGLEGGPVAPPRPLAEGRPRNRFAYFGQLNPFKGIKVLVEAVTRIPDRIWGDAILYIFGGNLEHQPEEFQTQVRNLFRMAGRRLRFMGSYKSADLPHLMREVDWTIVPSTWWENAPVVIQEAFHHGRPIIASDIGGMAEKVRDGIDGLHFRVSNPESLAETMMRALRDPALWDRLRAGIEPPTDAASAAREHARLFERLLTRQGTAGANHG
>NZ_CP012960.1|WP_011338731.1|2879979_2881701_+|type-I-secretion-system-permease/ATPase
MADPAEPAGLYRLILREAALGAGAAAFVGFFVNLLHLALPLYNAQVYDRVIGSANLDTLVALTGLVAILLVFGAVLDVLRARIFAILAARLAGQLGQPVFVAAVETALRGGPTAAAEGMRAVADLRSFLAGGAIALPIDLTFTPVLLLVLFALDPAYGLIGLGGAAALAGTGIVTEILARRPVASALAAGGSVQAETATALRSAEVIAAMGMLPDIARRWRRAQARSLAAADRGQARAKALSSLARFLRTAIQIAVICTGTTLVVDQAATIGTIVAAMAIMSRLLLPFEHLIDGWRQWMDAAEAHGHLRRLLREGGSPRSSLPAPVGRALLVADRVTYIPAGQDLPLLRNVSFRIEPGELLGVIGPSGAGKSTLARLTVGLWPPSAGGLFLDGQSTFLHERTSFGRAVGYLPQEPLLLDGSVRDNIARFRDAPMDEVIAAARQAGVHELIGRLPRGYGTRLADAGARLSGGQRQRIALARAIFGDPQLLVLDEPNASLDAEGEAALVSAVEQARARGAAVLVVAQRMSVLAKADRLLVLREGAVTHYGPRAEVMAAIGPQRRPAPVPVAQACS
>NZ_CP012960.1|WP_011338732.1|2881697_2882999_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MSAAGSWDDPAPPSYRPIFQAALVLILSLTVSLGSWAVYARLDGAVITQGVVLAESRRKTVENLEGGLLERLLVAPGDRVAAGQPVAQLATVQDRERLIQLEAEREGLLFDIWRLRTEAAGARVLDPATAPGPDAERTAAQLRLFQSRLHAHRDRIGSLDRQIELLIAQGAANDAQARAADLQIESWRAERADLVTLVDRGASPRQKLVELDRNITTLTGTREQYLALARAARADVERARMDRSTAGQLRLAEVAEQLAAAGRQLPGLEAQIRATRDVLERRTLRAPQAGLVVEVPTVTPGAVIGSGTAVMEIVPDLDHLVIQMRVPPEAIDNVRKGGLARVRLTAYRRALAPVVRGQVSFVSPDLIEDPRDGTTYFEARVTLDPESLAEQPDWVRLSAGMPVEVSVSTGERRAGDYLLEPILRHLRGALHDP
>NZ_CP012960.1|WP_002721525.1|2883068_2883875_+|CatB-related-O-acetyltransferase
MAQIPFDLKHADFARLAEVGLRLPGLREVKTLTQTSWIEAPTTIIGTVVSGAELQVGAFCSLSGGTLNNVHIGRYSSIAAGTIIGVHEHPTSWLTTSRTSYWPQVYGWDELIAPDRAAEIRAGKRPFTRSCPITEIGHDVWIGQGCFIKSGVRIGHGSVIGARATVTKDVPPYSIVLGTPGRVVRTRVPEPLIERLLAVEWWRYSIYDLFAAPFDDVARALDVIEDRIAEGAIKPYEAPLVTPADLAEPLGLAARLAARFPRPLARAS
>NZ_CP012960.1|WP_011338733.1|2883878_2884466_+|hypothetical-protein
MTLADPVPDKAKEAVSPLYGVVDVLRRDRIAGWVIDRRDPGASVTVEIRREGQRIASVPANRRRRDLEANRFGSGLYGFGAAIDPPLMEGMEFTVSVRAMAADGTEAILQPLSRVLEPSGEQRALARLLEEVAACRALLEAQQSLAERVERAQLRMETLWPEPDPVPPTGWGLRLLSLAALALALLSLTLSVMSL
>NZ_CP012960.1|WP_023003735.1|2884477_2887264_-|error-prone-DNA-polymerase
MPFVELSATSNFTFLTGASHPEELMRRAASLGLPALAIADENSVAGIVRAYGEAKEIARETGSAPRLIPAARIVVREGMSVTVLPRDRAAWGRLCRLLTLGRRAAPKGSCDLGFADLLAHAEGQEMLLHPPARSSGGWQTLAARLAAACPGRVALILAPHYAGQDRVRFERQALLAARLGIPTVASGLPILHHGARRRLADVLTAIRLGCRVDELGRRALVNGEQRLRSEAEMLRLYPGHEEAVFRSAEIAGRLDFCLSELRYEYPSEISKGESPADRLARLTREGLVWRFPAGVPEKIAAQARHELELIGKLGYEPYFLTVNDIVRFARDRGILCQGRGSAANSIVCYALGVTSVDPEVGTMVFERFVSEARNEPPDIDVDFEHERREEVIQHIYSRYGRDRAGLCATVIHYRGKRAVREVGRAMGLSEDTLTAMASQIWGWGGPGALTERRLREIGLDPNDRRLWLALQLIDEIQGFPRHLSQHVGGFVITEGRLDELVPIENAAMEGRTVICWDKDDIDMLGILKVDVLALGMLTCIRKAFDLIESHHHTSYTLATLPRDDSQTYDMLCRADSLGVFQVESRAQMNFLPRMRPRCFYDLVVQVAIIRPGPIQGDMVHPYIRRRNGQEDPHLPSDALGKVLGKTLGVPLFQEQAMQIAIIGANFSPEEADRLRRALATFKKHGNVTELKERFMNGMLANGYDKDFATRCFSQIEGFGSYGFPESHAASFALLVYASAWIKCHHPGIFACALLNAQPMGFYAPAQIVRDARAHGVIVLPPCINASLWDNVMERDREGRLALRLGFRQIKGVAEEEAQWIVAARGNGYRAVEDIWRRAGVPPATVTRLAEADCFAALGLTRREAQWQARALSGDRPLPLFAGDMDGEGIVEPEVVLREMTLGEEVVEDYVSFRLSLRSHPMALLRELV
>NZ_CP012960.1|WP_011338735.1|2887344_2888598_-|lytic-murein-transglycosylase
MRTFLLGLGLALAAAPGMADPVTVSQRPAARAEAAVTEAERAAQAGLEAWVIQFRPRALAAGIRPATFAAAFRDLRYDADAVARDRNQAEFNRTLWDYLDSAVSETRIAGGRAALVQHGALLGRIEARYGVPKEIVVAVWGMETSYGTRRGDHPLVGALATLAHDGRRARFFEEQLIAALKILDNGDVRPEAMTGSWAGAMGHTQFMPTSYLDFAVDFTGDGRRDIWSDDPSDALASTAAYLAKSGWRRGEPWGVEVRLPAGFDFAQSGKSLRQPAARWEALGVRRVDGSPLPAGEAALLLPAGAQGAAFLIYPNFRAIARYNPADAYVIGVGHLADRLKGAPAIAGGWPRGDRALASAERTELQRLLTAAGFDTGGADGMIGPNTLSALRAWQAARGLVADGYANEAVLNRLREGA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

216397 : 245680

Paracoccus_phage(26.67%)

terminase,head,tail,portal,capsid,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080588209.1\|216397_216622_+\|transposase	transposase	NA	NA	NA	NA
WP_023003513.1\|217918_219382_+	dNTP triphosphohydrolase	NA	NA	NA	NA
WP_160384112.1\|219414_220212_+	hypothetical protein	NA	NA	NA	NA
WP_160384111.1\|220170_221247_-	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	9.2e-42	34.7
WP_011336892.1\|221250_221895_-	hypothetical protein	NA	NA	NA	NA
WP_011336893.1\|222108_222591_-	hypothetical protein	F8TVB7	EBPR_siphovirus	7.1e-10	47.0
WP_011336894.1\|222603_223413_-	M15 family metallopeptidase	A0A0B5A5A2	Paracoccus_phage	3.8e-64	50.2
WP_011336895.1\|223466_224273_-	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	9.8e-81	56.6
WP_011336896.1\|224674_225673_+	PAS domain-containing protein	NA	NA	NA	NA
WP_011336897.1\|225685_226075_+	response regulator	NA	NA	NA	NA
WP_011336898.1\|226145_226463_-	hypothetical protein	I3UM16	Rhodobacter_phage	2.1e-23	58.9
WP_011336899.1\|226596_226935_-	hypothetical protein	NA	NA	NA	NA
WP_011336900.1\|226938_227256_-	hypothetical protein	NA	NA	NA	NA
WP_061350815.1\|227262_228747_-	hypothetical protein	A0A0S3UG21	Pseudomonas_phage	3.6e-12	30.2
WP_011336902.1\|228763_229654_-	hypothetical protein	NA	NA	NA	NA
WP_061350816.1\|229653_234660_-	hypothetical protein	A0A0U4JEA4	Pseudomonas_phage	9.5e-49	53.0
WP_017140045.1\|234722_234968_-	hypothetical protein	NA	NA	NA	NA
WP_017140046.1\|235042_235423_-	hypothetical protein	NA	NA	NA	NA
WP_011336906.1\|235419_235860_-	hypothetical protein	A0A2P1N076	Streptomyces_phage	2.5e-06	34.4
WP_011336907.1\|235869_236250_-	DUF3168 domain-containing protein	A0A0U2BX31	Paracoccus_phage	2.0e-28	55.6
WP_011336908.1\|236253_236421_-	hypothetical protein	NA	NA	NA	NA
WP_011336909.1\|236417_236891_-	HK97 gp10 family phage protein	A0A0U2C0P4	Paracoccus_phage	1.1e-26	51.9
WP_011336910.1\|236887_237220_-\|head,tail	head-tail adaptor protein	A0A0U2BXJ0	Paracoccus_phage	2.0e-16	44.5
WP_011336911.1\|237216_237723_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_011336912.1\|237727_238018_-	hypothetical protein	NA	NA	NA	NA
WP_011336913.1\|238150_239485_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	7.1e-52	37.4
WP_011336914.1\|239738_240482_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_011336915.1\|240492_241452_-	S49 family peptidase	I3ULZ8	Rhodobacter_phage	3.0e-20	36.2
WP_017140047.1\|241448_242684_-\|portal	phage portal protein	Q6DMU2	Streptococcus_phage	6.4e-23	25.8
WP_011336917.1\|242830_243703_-	EamA family transporter	NA	NA	NA	NA
WP_011336918.1\|244021_245680_-\|terminase	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	1.7e-79	32.3

DBSCAN-SWA_2

376993 : 386040

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011336989.1\|376993_379216_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	8.3e-114	40.9
WP_011336990.1\|379339_379861_-	single-stranded DNA-binding protein	A0A0U2C0X4	Paracoccus_phage	4.6e-47	77.6
WP_011336991.1\|380074_380689_+	lytic transglycosylase domain-containing protein	A0A0S2SXL7	Bacillus_phage	3.8e-24	45.3
WP_009563716.1\|380801_382094_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.5e-94	45.8
WP_011336992.1\|382200_382758_-	superoxide dismutase family protein	NA	NA	NA	NA
WP_002722646.1\|383049_383376_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.3e-19	54.4
WP_002722648.1\|383391_385056_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_002722650.1\|385065_386040_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.0e-52	42.3

DBSCAN-SWA_3

630646 : 667534

Paracoccus_phage(20.0%)

terminase,head,tail,portal,capsid,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011337174.1\|630646_631381_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011337175.1\|631396_631693_+	hypothetical protein	NA	NA	NA	NA
WP_023003546.1\|631699_632377_-	hypothetical protein	NA	NA	NA	NA
WP_011337177.1\|632518_632716_+	hypothetical protein	NA	NA	NA	NA
WP_017140100.1\|632810_633464_+	hypothetical protein	NA	NA	NA	NA
WP_011337179.1\|633932_634385_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011337180.1\|634623_635376_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_017140102.1\|636145_636589_+	hypothetical protein	NA	NA	NA	NA
WP_172825287.1\|637565_638675_+	hypothetical protein	NA	NA	NA	NA
WP_172825288.1\|638853_639063_+	hypothetical protein	NA	NA	NA	NA
WP_011337186.1\|639539_641054_+	SAVED domain-containing protein	NA	NA	NA	NA
WP_011337187.1\|641172_642384_+	hypothetical protein	NA	NA	NA	NA
WP_011337188.1\|642380_644186_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_160384100.1\|644253_644697_+	Mov34/MPN/PAD-1 family protein	NA	NA	NA	NA
WP_011337190.1\|644851_645349_-	hypothetical protein	F8TVB7	EBPR_siphovirus	5.6e-10	47.0
WP_011337191.1\|645361_646171_-	M15 family metallopeptidase	A0A0B5A5A2	Paracoccus_phage	4.9e-64	50.0
WP_011337192.1\|646225_647032_-	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	1.6e-83	57.8
WP_011337193.1\|647335_648241_+	DMT family transporter	NA	NA	NA	NA
WP_011336898.1\|648311_648629_-	hypothetical protein	I3UM16	Rhodobacter_phage	2.1e-23	58.9
WP_017140105.1\|648765_649104_-	hypothetical protein	NA	NA	NA	NA
WP_011337195.1\|649107_649425_-	hypothetical protein	NA	NA	NA	NA
WP_011337196.1\|649431_650916_-	hypothetical protein	G8DH61	Emiliania_huxleyi_virus	1.6e-12	32.5
WP_011337197.1\|650931_651822_-	hypothetical protein	NA	NA	NA	NA
WP_017140106.1\|651821_656828_-	hypothetical protein	A0A0U4JEA4	Pseudomonas_phage	3.1e-47	52.5
WP_011337199.1\|656966_657152_-	hypothetical protein	NA	NA	NA	NA
WP_011337200.1\|657286_657673_-	hypothetical protein	NA	NA	NA	NA
WP_011337201.1\|657669_658113_-	hypothetical protein	A0A2P1N076	Streptomyces_phage	1.8e-07	33.3
WP_011337202.1\|658122_658503_-	DUF3168 domain-containing protein	A0A0U2BX31	Paracoccus_phage	3.8e-27	53.2
WP_011337203.1\|658506_659064_-	hypothetical protein	A0A0U2C0P4	Paracoccus_phage	2.9e-15	37.3
WP_011337204.1\|659063_659396_-\|head	phage head closure protein	NA	NA	NA	NA
WP_011337205.1\|659392_659734_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_011337206.1\|659730_660165_-	hypothetical protein	NA	NA	NA	NA
WP_011337207.1\|660235_661537_-\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	1.3e-79	43.1
WP_011337208.1\|661549_662389_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	1.4e-69	58.1
WP_011337209.1\|662385_663636_-\|portal	phage portal protein	M4QP41	Tetraselmis_viridis_virus	5.8e-80	40.3
WP_011337210.1\|663635_665345_-\|terminase	terminase large subunit	A0A2H4J559	uncultured_Caudovirales_phage	6.2e-133	41.9
WP_011337211.1\|665346_665823_-	hypothetical protein	NA	NA	NA	NA
WP_011337212.1\|665865_666765_-	AAA family ATPase	I3ULZ4	Rhodobacter_phage	3.9e-30	56.1
WP_011337213.1\|666871_667534_-	hypothetical protein	G8DGC1	Emiliania_huxleyi_virus	4.2e-37	40.6

DBSCAN-SWA_4

963740 : 985740

Azospirillum_phage(33.33%)

terminase,head,tail,capsid,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002719501.1\|963740_964472_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_002719502.1\|964546_964798_+	hypothetical protein	NA	NA	NA	NA
WP_002719503.1\|964883_965246_+	PRC-barrel domain-containing protein	NA	NA	NA	NA
WP_002719504.1\|965233_965812_-	hypothetical protein	NA	NA	NA	NA
WP_017140143.1\|965875_967243_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_011337410.1\|967346_968525_-	aminotransferase	NA	NA	NA	NA
WP_011337411.1\|968553_969057_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_002719508.1\|969066_969681_-	LysE family transporter	NA	NA	NA	NA
WP_002719509.1\|969682_970507_-	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_011337412.1\|970649_971252_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_002719511.1\|971368_971911_+	cold shock domain-containing protein	NA	NA	NA	NA
WP_009564802.1\|971871_972387_+	DUF192 domain-containing protein	NA	NA	NA	NA
WP_011337414.1\|973036_973831_-	hypothetical protein	A0A1C7A9N9	Freshwater_phage	1.3e-21	31.6
WP_011337415.1\|973957_974119_-	hypothetical protein	NA	NA	NA	NA
WP_011337416.1\|974248_974881_-	hypothetical protein	NA	NA	NA	NA
WP_011337417.1\|974955_975420_-	hypothetical protein	NA	NA	NA	NA
WP_011337418.1\|976136_978146_-	hypothetical protein	A0A291AUM6	Sinorhizobium_phage	2.7e-63	48.4
WP_017140144.1\|978158_979769_-\|terminase	terminase large subunit	B0VK29	Azospirillum_phage	2.1e-37	27.0
WP_011337420.1\|979768_980164_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_011337421.1\|980160_980475_-\|head	phage head closure protein	NA	NA	NA	NA
WP_011337422.1\|980477_980894_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_017140145.1\|980886_981279_-	HK97 gp10 family phage protein	A0A0U2C0P4	Paracoccus_phage	6.3e-09	40.5
WP_023003570.1\|981292_981604_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_011337424.1\|981798_983271_+	hypothetical protein	NA	NA	NA	NA
WP_011337425.1\|983255_983606_-	HNH endonuclease	Q38456	Bacillus_phage	5.5e-20	48.9
WP_011337426.1\|983608_984205_-	hypothetical protein	NA	NA	NA	NA
WP_017140147.1\|984204_985740_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	5.0e-41	36.0

DBSCAN-SWA_5

1049731 : 1113280

Bacillus_thuringiensis_phage(27.27%)

head,tail,portal,capsid,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061350824.1\|1049731_1050457_+\|protease	proteasome-type protease	NA	NA	NA	NA
WP_011337476.1\|1050446_1051400_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_002719575.1\|1051396_1051681_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_017140153.1\|1051789_1052329_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_011337479.1\|1055212_1055509_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_002719579.1\|1055563_1055902_+	ferredoxin family protein	NA	NA	NA	NA
WP_002719580.1\|1056181_1056691_+	CarD family transcriptional regulator	NA	NA	NA	NA
WP_017140155.1\|1056878_1057628_-	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_011337481.1\|1057709_1058726_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_002719583.1\|1058781_1060650_-	cation:proton antiporter	NA	NA	NA	NA
WP_011337483.1\|1060824_1063701_-	hypothetical protein	NA	NA	NA	NA
WP_002719585.1\|1063864_1064557_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_061350826.1\|1064602_1065895_-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	NA	NA	NA
WP_011337485.1\|1066137_1066485_-	hypothetical protein	NA	NA	NA	NA
WP_002719588.1\|1066481_1066868_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	2.6e-07	33.1
WP_011337486.1\|1066845_1067763_-	protein-glutamate O-methyltransferase	NA	NA	NA	NA
WP_011337487.1\|1067759_1068218_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_011337488.1\|1068219_1070280_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_011337489.1\|1070287_1070656_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	9.8e-12	35.3
WP_011337490.1\|1070646_1070931_-	STAS domain-containing protein	NA	NA	NA	NA
WP_011337491.1\|1070927_1071527_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA
WP_011337493.1\|1074068_1075856_-	hypothetical protein	NA	NA	NA	NA
WP_011337494.1\|1075959_1077642_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.9e-07	31.4
WP_002719598.1\|1077730_1078099_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	1.5e-12	38.5
WP_011337495.1\|1078095_1078425_-	STAS domain-containing protein	NA	NA	NA	NA
WP_050988678.1\|1078757_1080710_+	alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase	NA	NA	NA	NA
WP_061350827.1\|1080706_1084012_+	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA
WP_011337498.1\|1084008_1086195_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_011337499.1\|1086191_1088258_+	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_061350828.1\|1088254_1090033_+	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA
WP_011337501.1\|1090029_1091847_+	4-alpha-glucanotransferase	NA	NA	NA	NA
WP_061350829.1\|1091843_1094459_+	malto-oligosyltrehalose synthase	NA	NA	NA	NA
WP_011337503.1\|1094517_1095183_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_002719608.1\|1095302_1096766_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.2e-47	32.0
WP_002719609.1\|1096850_1097465_-	CvpA family protein	NA	NA	NA	NA
WP_002719610.1\|1097483_1098842_-	DNA repair protein RadA	NA	NA	NA	NA
WP_002719611.1\|1098974_1099400_-	paraquat-inducible protein A	NA	NA	NA	NA
WP_002719612.1\|1099400_1100147_-	ATP-binding cassette domain-containing protein	F2Y1V5	Organic_Lake_phycodnavirus	8.7e-07	25.6
WP_002719613.1\|1100143_1100926_-	ABC transporter permease	NA	NA	NA	NA
WP_011337504.1\|1100922_1101972_-	alanine racemase	NA	NA	NA	NA
WP_002719615.1\|1102200_1102938_+	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_002719616.1\|1103116_1103350_+	acyl carrier protein	I1TR04	Pseudomonas_phage	7.3e-05	43.9
WP_011337505.1\|1103846_1105109_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_017140158.1\|1105108_1106287_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_011840819.1\|1106357_1106801_+	hypothetical protein	NA	NA	NA	NA
WP_023003587.1\|1106793_1108092_+	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	1.3e-71	41.7
WP_011337509.1\|1108164_1109340_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.5e-58	38.3
WP_002719622.1\|1109341_1109575_+	hypothetical protein	NA	NA	NA	NA
WP_011337510.1\|1109579_1110143_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.4e-30	49.3
WP_011337511.1\|1110208_1111405_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	3.6e-63	42.2
WP_011337512.1\|1111499_1112099_+	hypothetical protein	NA	NA	NA	NA
WP_011337513.1\|1112098_1112434_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_011337514.1\|1112430_1112829_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_002719628.1\|1112866_1113280_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA

DBSCAN-SWA_6

1622477 : 1693404

Paracoccus_phage(21.43%)

holin,tRNA,head,tail,capsid,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017140224.1\|1622477_1624220_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_011337866.1\|1624295_1624781_-\|holin	holin family protein	NA	NA	NA	NA
WP_011337867.1\|1624771_1625383_-	N-acetylmuramidase	G8DH66	Emiliania_huxleyi_virus	8.0e-59	54.7
WP_002720104.1\|1625543_1625999_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_011337869.1\|1626021_1627050_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_011337870.1\|1627074_1627887_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_011337871.1\|1628024_1631411_-	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA
WP_011337872.1\|1631567_1632461_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023003631.1\|1632906_1635069_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.7e-140	41.6
WP_011337874.1\|1635302_1635545_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_002720111.1\|1635604_1635970_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_002720112.1\|1636194_1636569_-	cell division protein ZapA	NA	NA	NA	NA
WP_017140225.1\|1636561_1637029_-	hypothetical protein	NA	NA	NA	NA
WP_011337876.1\|1637286_1639305_+	transketolase	NA	NA	NA	NA
WP_017140226.1\|1639377_1639671_-	DUF2934 domain-containing protein	NA	NA	NA	NA
WP_011337878.1\|1639702_1640674_-	DUF808 domain-containing protein	NA	NA	NA	NA
WP_002720117.1\|1641246_1642248_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_002720118.1\|1642456_1642612_+	hypothetical protein	NA	NA	NA	NA
WP_002720119.1\|1642638_1643127_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.5e-33	47.5
WP_002720120.1\|1643196_1643631_-	CBS domain-containing protein	NA	NA	NA	NA
WP_011337879.1\|1643685_1644579_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009565364.1\|1644681_1646181_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_002720123.1\|1646705_1647362_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_002720124.1\|1647613_1647817_+	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_009565362.1\|1648051_1650910_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	61.0
WP_002720126.1\|1651026_1652193_-	MFS transporter	NA	NA	NA	NA
WP_061350874.1\|1652365_1653760_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
WP_002720128.1\|1653848_1654424_-	DUF924 domain-containing protein	A0A1V0SIY0	Klosneuvirus	6.0e-16	32.6
WP_002720129.1\|1654630_1655887_-	MFS transporter	NA	NA	NA	NA
WP_011337883.1\|1655966_1657007_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_011337884.1\|1657092_1660377_-	hypothetical protein	NA	NA	NA	NA
WP_002720132.1\|1660467_1660929_+	peroxiredoxin	NA	NA	NA	NA
WP_011337885.1\|1661339_1662683_+	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	1.5e-20	46.7
WP_011337886.1\|1662672_1663191_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_011337887.1\|1663386_1664163_-	DUF2189 domain-containing protein	NA	NA	NA	NA
WP_002720136.1\|1664532_1665660_-	peptide chain release factor 2	NA	NA	NA	NA
WP_011337888.1\|1665768_1668318_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_011337889.1\|1668409_1669645_-	N-acetylmuramoyl-L-alanine amidase	C8CHK8	Thermus_virus	4.8e-10	37.9
WP_011337890.1\|1669693_1670845_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_011337891.1\|1671012_1671756_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_011337892.1\|1672091_1673225_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_017140227.1\|1673355_1674570_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011337894.1\|1674680_1675904_-	5-aminolevulinate synthase	V5LQ39	Emiliania_huxleyi_virus	3.6e-34	29.1
WP_011337895.1\|1676038_1676608_-	hypothetical protein	NA	NA	NA	NA
WP_017140228.1\|1676837_1678211_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_011337897.1\|1678207_1678651_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_160384072.1\|1680177_1680399_+	hypothetical protein	NA	NA	NA	NA
WP_023003639.1\|1684049_1684475_-	hypothetical protein	S4TR39	Salmonella_phage	1.3e-10	31.4
WP_023003640.1\|1684524_1685199_-	hypothetical protein	A0A0U2C133	Paracoccus_phage	7.1e-16	32.6
WP_011337903.1\|1685207_1685852_-	hypothetical protein	NA	NA	NA	NA
WP_023003642.1\|1685855_1688177_-	hypothetical protein	A0A2H4PI09	Pseudomonas_phage	8.6e-21	29.6
WP_023003646.1\|1688581_1688914_-	hypothetical protein	NA	NA	NA	NA
WP_011337905.1\|1689040_1689526_-	HNH endonuclease	Q6XQ94	Escherichia_phage	4.2e-18	39.5
WP_023003648.1\|1689691_1690111_-\|tail	phage major tail protein 2	NA	NA	NA	NA
WP_023003649.1\|1690174_1690543_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_023003651.1\|1690548_1691013_-	HK97 gp10 family phage protein	A0A0U2C0P4	Paracoccus_phage	4.1e-15	34.0
WP_162129770.1\|1691013_1691295_-\|head	phage head closure protein	NA	NA	NA	NA
WP_011337909.1\|1691332_1691674_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_011337910.1\|1691697_1692807_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_011337911.1\|1692879_1693404_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	3.0e-30	50.6

DBSCAN-SWA_7

1909206 : 1926851

Bacillus_phage(50.0%)

tRNA,terminase,head,portal,capsid,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011338055.1\|1909206_1909851_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_002720338.1\|1909799_1910171_-	DUF2155 domain-containing protein	NA	NA	NA	NA
WP_002720339.1\|1910167_1910638_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_002720340.1\|1910637_1911012_-	NADH:ubiquinone oxidoreductase subunit NDUFA12	NA	NA	NA	NA
WP_061350849.1\|1911136_1912402_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.0e-133	58.4
WP_002720342.1\|1912526_1913159_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	5.2e-61	61.0
WP_011338057.1\|1913325_1913934_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_011338058.1\|1914048_1915254_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011338059.1\|1915250_1916939_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_011338060.1\|1916935_1917580_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_002720349.1\|1917712_1918183_+	CAP domain-containing protein	A0A0E3T7R5	Bacillus_phage	4.3e-12	34.4
WP_011338061.1\|1918259_1919579_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_011338062.1\|1919619_1920531_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_017140245.1\|1920835_1921114_+	hypothetical protein	NA	NA	NA	NA
WP_011338064.1\|1921126_1921633_-	hypothetical protein	NA	NA	NA	NA
WP_011338065.1\|1921668_1922175_-	hypothetical protein	NA	NA	NA	NA
WP_011338066.1\|1922176_1923238_-\|portal	phage portal protein	NA	NA	NA	NA
WP_011338067.1\|1923239_1923794_-\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
WP_061350850.1\|1923793_1925056_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_011338069.1\|1925040_1925382_-	HNH endonuclease	A0A0S2GLI5	Bacillus_phage	3.7e-05	32.5
WP_017140248.1\|1925372_1926851_-\|terminase	terminase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP012961

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

373519 : 424429

Vibrio_phage(21.43%)

integrase,tail,protease

attL 371772:371790|attR 398505:398523

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
371772:371790	attL	NA	NA	NA	NA
WP_011339202.1\|373519_374812_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011339203.1\|374808_375510_-	hypothetical protein	NA	NA	NA	NA
WP_017140353.1\|375506_375722_-	hypothetical protein	NA	NA	NA	NA
WP_017140354.1\|375718_375928_-	DUF4031 domain-containing protein	A0A0A8IK97	Aurantimonas_phage	7.7e-14	59.1
WP_017140355.1\|376084_376354_-	hypothetical protein	A0A1X9HWB1	Ruegeria_phage	6.9e-07	36.7
WP_017140356.1\|376350_376578_-	hypothetical protein	NA	NA	NA	NA
WP_017140357.1\|376672_377110_+	hypothetical protein	Q8W6P3	Burkholderia_virus	1.6e-13	36.6
WP_011339204.1\|377106_377613_+	hypothetical protein	M4SPS7	Rhodobacter_phage	3.3e-10	39.2
WP_002723970.1\|377934_378579_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_061350878.1\|378603_381723_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_011339206.1\|381739_382903_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011339207.1\|382999_384835_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_011339208.1\|385070_386873_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002723978.1\|387397_388225_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011339210.1\|388407_389913_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_011339211.1\|389926_390400_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_011339212.1\|390543_391203_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_011339213.1\|391350_392262_-	porin	NA	NA	NA	NA
WP_002723983.1\|392502_392676_-	YdcH family protein	NA	NA	NA	NA
WP_011339214.1\|393161_393890_+	DUF2306 domain-containing protein	NA	NA	NA	NA
WP_061350879.1\|394397_396176_+	SLC13 family permease	NA	NA	NA	NA
WP_011339216.1\|396309_396774_-	cupin domain-containing protein	NA	NA	NA	NA
WP_011339217.1\|396832_397549_-	LrgB family protein	NA	NA	NA	NA
WP_011339218.1\|397541_397895_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_017140360.1\|398003_398660_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA
398505:398523	attR	NA	NA	NA	NA
WP_011339220.1\|398660_399497_-	ABC transporter permease	NA	NA	NA	NA
WP_009561538.1\|399498_400362_-	ABC transporter permease	NA	NA	NA	NA
WP_011339221.1\|400594_401860_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_011339222.1\|401885_402863_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-21	32.2
WP_011339223.1\|403074_403788_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_011339224.1\|403935_404373_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_011339225.1\|404369_405269_-	EamA family transporter RarD	NA	NA	NA	NA
WP_009561543.1\|405763_406261_+	bacterioferritin	NA	NA	NA	NA
WP_011339226.1\|406940_408047_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_011339227.1\|408053_409526_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	3.7e-09	32.1
WP_023004202.1\|409923_411087_+	AI-2E family transporter	NA	NA	NA	NA
WP_011339229.1\|411096_413823_-	methionine synthase	NA	NA	NA	NA
WP_160384144.1\|413819_414845_-	homocysteine S-methyltransferase family protein	A0A140XBC7	Dickeya_phage	1.2e-14	54.0
WP_011339231.1\|415174_416053_+	hypothetical protein	NA	NA	NA	NA
WP_017140362.1\|416049_417093_+	lipocalin	NA	NA	NA	NA
WP_002724021.1\|417445_417679_+	hypothetical protein	NA	NA	NA	NA
WP_011339233.1\|418098_418293_+	hypothetical protein	A0A0U4JEJ6	Pseudomonas_phage	8.8e-12	58.2
WP_011339235.1\|418573_419071_+\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	6.8e-24	37.7
WP_017140364.1\|419409_419538_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_061350880.1\|419547_421875_+	tape measure protein	A0A2I7S9D9	Vibrio_phage	7.0e-55	37.9
WP_017140365.1\|421867_422278_+\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	8.6e-33	50.4
WP_011339239.1\|422274_422487_+\|tail	tail protein X	R9TR63	Vibrio_phage	9.9e-09	47.8
WP_011339240.1\|422483_423458_+\|tail	phage tail protein	D4HTW7	Vibrio_phage	1.0e-44	38.6
WP_017140366.1\|423601_424429_+	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	3.9e-93	62.3

DBSCAN-SWA_2

739294 : 746465

Rhizobium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011339479.1\|739294_740641_+	S49 family peptidase	A0A068CE01	Rhizobium_phage	6.7e-58	47.0
WP_011339480.1\|740649_740961_+	hypothetical protein	NA	NA	NA	NA
WP_011339481.1\|740957_741377_+	hypothetical protein	NA	NA	NA	NA
WP_017140410.1\|742410_742728_+	hypothetical protein	NA	NA	NA	NA
WP_011339484.1\|742731_743058_+	hypothetical protein	NA	NA	NA	NA
WP_011339485.1\|743191_743509_+	hypothetical protein	I3UM16	Rhodobacter_phage	2.8e-23	57.9
WP_011339486.1\|743561_743783_-	hypothetical protein	NA	NA	NA	NA
WP_017140411.1\|743775_744048_-	BrnT family toxin	K4NX81	Burkholderia_phage	2.4e-15	48.2
WP_011339488.1\|744275_745082_+	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	2.5e-84	58.6
WP_011339489.1\|745136_745946_+	M15 family metallopeptidase	A0A0B5A5A2	Paracoccus_phage	7.1e-63	49.1
WP_011339490.1\|745958_746465_+	hypothetical protein	F8TVB7	EBPR_siphovirus	3.9e-11	48.2

DBSCAN-SWA_3

887042 : 923660

Rhodobacter_phage(26.92%)

portal,capsid,integrase,terminase,head

attL 893438:893454|attR 925726:925742

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011339592.1\|887042_887471_-	DNA mismatch endonuclease Vsr	I6NSG0	Burkholderia_phage	8.7e-36	50.4
WP_011339593.1\|887723_888206_-	hypothetical protein	F8TVB7	EBPR_siphovirus	1.2e-12	51.8
WP_061350891.1\|888218_889028_-	M15 family metallopeptidase	A0A0B5A5A2	Paracoccus_phage	3.2e-63	49.4
WP_011339595.1\|889082_889889_-	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	3.4e-81	57.0
WP_011339596.1\|890257_890620_-	hypothetical protein	NA	NA	NA	NA
WP_011339597.1\|890871_891189_-	hypothetical protein	I3UM16	Rhodobacter_phage	3.7e-23	57.9
WP_011339598.1\|891407_891734_-	hypothetical protein	NA	NA	NA	NA
WP_011339599.1\|891737_892055_-	hypothetical protein	NA	NA	NA	NA
WP_011339600.1\|892061_893546_-	hypothetical protein	A0A1S5R1J5	Pseudomonas_phage	1.7e-14	30.8
893438:893454	attL	NA	NA	NA	NA
WP_011339601.1\|893561_894452_-	hypothetical protein	A0A2H4J8C7	uncultured_Caudovirales_phage	8.1e-28	31.0
WP_061350892.1\|894451_899626_-	hypothetical protein	F1C5E9	Cronobacter_phage	2.4e-07	28.5
WP_017140287.1\|899728_900226_+	YbjQ family protein	M4STD1	Rhodobacter_phage	4.2e-26	42.6
WP_017140288.1\|900188_900551_-	hypothetical protein	NA	NA	NA	NA
WP_017140289.1\|900613_901054_-	hypothetical protein	NA	NA	NA	NA
WP_011339606.1\|901157_901628_-	hypothetical protein	M4QQ74	Salicola_phage	1.2e-17	38.9
WP_011339607.1\|901739_902162_-	hypothetical protein	NA	NA	NA	NA
WP_011339608.1\|902158_902485_-	hypothetical protein	NA	NA	NA	NA
WP_011339609.1\|902495_903518_-\|capsid	major capsid protein	K4I3Z3	Acidithiobacillus_phage	1.1e-105	56.3
WP_011339610.1\|903599_903989_-\|head	head decoration protein	K4ICP8	Acidithiobacillus_phage	3.6e-20	45.7
WP_011339611.1\|904124_905471_-	S49 family peptidase	A0A068CE01	Rhizobium_phage	8.7e-58	48.2
WP_011339612.1\|905467_906958_-\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	1.9e-178	67.4
WP_002723266.1\|906957_907167_-	hypothetical protein	NA	NA	NA	NA
WP_011339613.1\|907163_909326_-\|terminase	phage terminase large subunit family protein	A0A291AUS9	Sinorhizobium_phage	1.9e-102	35.4
WP_017140290.1\|909325_909982_-\|terminase	terminase small subunit	NA	NA	NA	NA
WP_011339615.1\|910110_910827_-	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	4.0e-17	30.5
WP_017140292.1\|910939_911776_-	hypothetical protein	I3ULZ3	Rhodobacter_phage	9.4e-18	47.1
WP_011339617.1\|911772_912357_-	hypothetical protein	NA	NA	NA	NA
WP_002723274.1\|912576_913230_-	hypothetical protein	NA	NA	NA	NA
WP_011339618.1\|913226_913514_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_011339619.1\|913510_913978_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011339620.1\|913974_914496_-	DUF1937 family protein	I3UM60	Rhodobacter_phage	2.7e-23	42.3
WP_011339621.1\|914632_914893_-	hypothetical protein	NA	NA	NA	NA
WP_002723285.1\|914889_915150_-	hypothetical protein	A0A1X9HW32	Ruegeria_phage	1.8e-07	50.7
WP_017140293.1\|915230_915467_-	hypothetical protein	NA	NA	NA	NA
WP_017140294.1\|915465_916221_+	helix-turn-helix domain-containing protein	H6WBQ3	Rhodobacter_phage	1.7e-13	40.0
WP_011339624.1\|916577_916775_+	hypothetical protein	NA	NA	NA	NA
WP_011339625.1\|916771_917104_+	hypothetical protein	NA	NA	NA	NA
WP_017140295.1\|917336_917696_+	hypothetical protein	I3UM32	Rhodobacter_phage	4.0e-18	44.0
WP_011339628.1\|917714_918701_+	YfdQ family protein	H6WBP5	Rhodobacter_phage	7.5e-75	46.9
WP_017140296.1\|918797_918950_+	hypothetical protein	NA	NA	NA	NA
WP_017140297.1\|918936_919146_+	hypothetical protein	NA	NA	NA	NA
WP_023004254.1\|919148_919352_+	hypothetical protein	NA	NA	NA	NA
WP_011339629.1\|919344_920454_+	phage Gp37/Gp68 family protein	A0A0A8ILD3	Aurantimonas_phage	1.4e-85	50.1
WP_011339630.1\|920684_920939_+	hypothetical protein	NA	NA	NA	NA
WP_030002922.1\|921057_921396_+	DUF4326 domain-containing protein	A0A142K9N0	Gordonia_phage	4.9e-18	35.9
WP_011339632.1\|921701_922418_+	hypothetical protein	A0A0U2BXK1	Paracoccus_phage	3.5e-82	64.3
WP_011339633.1\|922661_923660_+\|integrase	site-specific integrase	U5P434	Shigella_phage	5.0e-10	26.3
925726:925742	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012963

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP012960

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP012961

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection