CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011391	Faecalibaculum rodentium strain ALO17 chromosome, complete genome	5 crisprs	RT,cas2,cas1,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,DEDDh,csa3,cas3,WYL,c2c9_V-U4,PrimPol,cas6e,cas5,cas7,cse2gr11,cas8e	0	10	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011391_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011391_1

137126-139197

TypeIII

Consensus_repeat	Method
GGTAAATATTGTTCTTATTAAGGATTAACGC	PILER-CR
GGTAAATATTGTTCTTATTAAGGATTAACGC	CRISPRCasFinder
GGTAAATATTGTTCTTATTAAGGATTAACGC	CRT

30 spacers

RT,cas2,cas1,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1

The CRISPR arrays of NZ_CP011391_1

>merge|NZ_CP011391|1|137126-139197|PILER-CR,CRISPRCasFinder,CRT
GGTAAATATTGTTCTTATTAAGGATTAACGCTTGATGACGTCGTCCAAGTCCGTATCAGGATCCGCATTTTGGTAAATATTGTTCTTATTAAGGATTAACGCAAGTTTAGATTTCTTAAACATTTTTTTATTTCCTTTCCTGGTAAATATTGTTCTTATTAAGGATTAACGCAATATAATTCTTGGTTTGTAAGCTCATAAACAGGCATATGGTAAATATTGTTCTTATTAAGGATTAACGCTCCACGTGTTGCACCAGTAAGAACCAGAATCGTTTCGGTAAATATTGTTCTTATTAAGGATTAACGCGTTTTCGATTTTCAGGCTGTCCCGCTCCTGCTGCTCGGTAAATATTGTTCTTATTAAGGATTAACGCCTGCCATTTCTTTGATGATTCCCTGCGTCATTGCTTCAGGTAAATATTGTTCTTATTAAGGATTAACGCAAGTGTTTCTGAAGTTTAGATTCATTAAACATTGTTTTAGGTAAATATTGTTCTTATTAAGGATTAACGCAATCTGCTTCACGGACAGCTTTCTTCAGATTACGGGTAAATATTGTTCTTATTAAGGATTAACGCCTGGAGCTCTGCTAGCACGTCATCAAACTCCGGATCGGTAAATATTGTTCTTATTAAGGATTAACGCCTGAAGTTTTTGGTATCGTGCCTCGTTCAGGAAGTTGGGTAAATATTGTTCTTATTAAGGATTAACGCTGGTTGTATCCTCCTTACATCCATTTCCAGTTACGGGTAAATATTGTTCTTATTAAGGATTAACGCTTTGTCGCTTCAATGATGTTCATGTGTGTGTCTCCTTGGTAAATATTGTTCTTATTAAGGATTAACGCTAGAATTCGTCCAGGTCTTCTTTGCTGGGAAATACCGGTAAATATTGTTCTTATTAAGGATTAACGCCGATGCCAGAGTCGTCAAAAAGATCATGGGCCATAAGGGTAAATATTGTTCTTATTAAGGATTAACGCCAGTCCCAGCCCTCAGTCAGAAGCATGCTGTTGAGGTAAATATTGTTCTTATTAAGGATTAACGCTCTAATTTGTCGTAATCTGCTGTCTGCATTTCGTCTTGGTAAATATTGTTCTTATTAAGGATTAACGCTGTTTCACGGATATAACATTTTACATCTGCGTTTGTGGTAAATATTGTTCTTATTAAGGATTAACGCGCAGCGCTGTCACCATCAATCTTCCCCGGGCATCGTGGTAAATATTGTTCTTATTAAGGATTAACGCTTTCCCTGGATGATTCGTTCATCCAGTTTTTTCTGGGTAAATATTGTTCTTATTAAGGATAAACGCTGTAAATATCGTTAAATCCTTCCCACTCTGCCACCTCTTCTAGGTAAATATTGTTCTTATTAAGGATTAACGCTCAATAGCCGTTGTCCTGCCTTTCGTGGTTGACCCGGGGTAAATATTGTTCTTATTAAGGATTAACGCAAGCAATTTTCCGTGTGGCACTGAGAAGATACAAATTTGGGTAAATATTGTTCTTATTAAGGATTAACGCGTGATGAGCTGGAAACAATTATTGATGGCGGTTGAAACAGGTAAATATTGTTCTTATTAAGGATTAACGCTTTGTAGTTTTCCATGTGTTTACCTCCTAGGCTATTCCAGCCAGGTAAATATTGTTCTTATTAAGGATTAACGCTTTAACCAACTCCGATAACGTCTGACTTGCTTTTGGTAAATATTGTTCTTATTAAGGATTAACGCTCTGCTGCCTGATAATTTTTTGTCAGCAGGTATTTCGGTAAATATTGTTCTTATTAAGGATTAACGCGACAATCTTCATCCATTTACCTGTCAGAACGCCTTCATGGTAAATATTGTTCTTATTAAGGATTAACGCGTAATCTCTGCGCTGACCATGTGGCTCTGCGCTGTGGTAAATATTGTTCTTATTAAGGATTAACGCTAAAACTTTGGCGGTAAACACTGTGGCCGCTCACAATGGTAAATATTGTTCTTATTAAGGATTAACACCGCTCCAGTCACCTGCAGCTCTGACCCCATCCAGGGTAAATATTGTTCCTGTTCAGGGTTAACGA

>NZ_CP011391|1|1|137126-139132|PILER-CR
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTGATGACGTCGTCCAAGTCCGTATCAGGATCCGCATTTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	AAGTTTAGATTTCTTAAACATTTTTTTATTTCCTTTCCT
GGTAAATATTGTTCTTATTAAGGATTAACGC	AATATAATTCTTGGTTTGTAAGCTCATAAACAGGCATAT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TCCACGTGTTGCACCAGTAAGAACCAGAATCGTTTC
GGTAAATATTGTTCTTATTAAGGATTAACGC	GTTTTCGATTTTCAGGCTGTCCCGCTCCTGCTGCTC
GGTAAATATTGTTCTTATTAAGGATTAACGC	CTGCCATTTCTTTGATGATTCCCTGCGTCATTGCTTCA
GGTAAATATTGTTCTTATTAAGGATTAACGC	AAGTGTTTCTGAAGTTTAGATTCATTAAACATTGTTTTA
GGTAAATATTGTTCTTATTAAGGATTAACGC	AATCTGCTTCACGGACAGCTTTCTTCAGATTACG
GGTAAATATTGTTCTTATTAAGGATTAACGC	CTGGAGCTCTGCTAGCACGTCATCAAACTCCGGATC
GGTAAATATTGTTCTTATTAAGGATTAACGC	CTGAAGTTTTTGGTATCGTGCCTCGTTCAGGAAGTTG
GGTAAATATTGTTCTTATTAAGGATTAACGC	TGGTTGTATCCTCCTTACATCCATTTCCAGTTACG
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTTGTCGCTTCAATGATGTTCATGTGTGTGTCTCCTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TAGAATTCGTCCAGGTCTTCTTTGCTGGGAAATACC
GGTAAATATTGTTCTTATTAAGGATTAACGC	CGATGCCAGAGTCGTCAAAAAGATCATGGGCCATAAG
GGTAAATATTGTTCTTATTAAGGATTAACGC	CAGTCCCAGCCCTCAGTCAGAAGCATGCTGTTGA
GGTAAATATTGTTCTTATTAAGGATTAACGC	TCTAATTTGTCGTAATCTGCTGTCTGCATTTCGTCTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TGTTTCACGGATATAACATTTTACATCTGCGTTTGT
GGTAAATATTGTTCTTATTAAGGATTAACGC	GCAGCGCTGTCACCATCAATCTTCCCCGGGCATCGT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTTCCCTGGATGATTCGTTCATCCAGTTTTTTCTG
GGTAAATATTGTTCTTATTAAGGATAAACGC	TGTAAATATCGTTAAATCCTTCCCACTCTGCCACCTCTTCTA
GGTAAATATTGTTCTTATTAAGGATTAACGC	TCAATAGCCGTTGTCCTGCCTTTCGTGGTTGACCCGG
GGTAAATATTGTTCTTATTAAGGATTAACGC	AAGCAATTTTCCGTGTGGCACTGAGAAGATACAAATTTG
GGTAAATATTGTTCTTATTAAGGATTAACGC	GTGATGAGCTGGAAACAATTATTGATGGCGGTTGAAACA
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTTGTAGTTTTCCATGTGTTTACCTCCTAGGCTATTCCAGCCA
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTTAACCAACTCCGATAACGTCTGACTTGCTTTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TCTGCTGCCTGATAATTTTTTGTCAGCAGGTATTTC
GGTAAATATTGTTCTTATTAAGGATTAACGC	GACAATCTTCATCCATTTACCTGTCAGAACGCCTTCAT
GGTAAATATTGTTCTTATTAAGGATTAACGC	GTAATCTCTGCGCTGACCATGTGGCTCTGCGCTGT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TAAAACTTTGGCGGTAAACACTGTGGCCGCTCACAAT
GGTAAATATTGTTCTTATTAAGGATTAACAC

>NZ_CP011391|1|1|137126-139197|CRISPRCasFinder
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTGATGACGTCGTCCAAGTCCGTATCAGGATCCGCATTTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	AAGTTTAGATTTCTTAAACATTTTTTTATTTCCTTTCCT
GGTAAATATTGTTCTTATTAAGGATTAACGC	AATATAATTCTTGGTTTGTAAGCTCATAAACAGGCATAT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TCCACGTGTTGCACCAGTAAGAACCAGAATCGTTTC
GGTAAATATTGTTCTTATTAAGGATTAACGC	GTTTTCGATTTTCAGGCTGTCCCGCTCCTGCTGCTC
GGTAAATATTGTTCTTATTAAGGATTAACGC	CTGCCATTTCTTTGATGATTCCCTGCGTCATTGCTTCA
GGTAAATATTGTTCTTATTAAGGATTAACGC	AAGTGTTTCTGAAGTTTAGATTCATTAAACATTGTTTTA
GGTAAATATTGTTCTTATTAAGGATTAACGC	AATCTGCTTCACGGACAGCTTTCTTCAGATTACG
GGTAAATATTGTTCTTATTAAGGATTAACGC	CTGGAGCTCTGCTAGCACGTCATCAAACTCCGGATC
GGTAAATATTGTTCTTATTAAGGATTAACGC	CTGAAGTTTTTGGTATCGTGCCTCGTTCAGGAAGTTG
GGTAAATATTGTTCTTATTAAGGATTAACGC	TGGTTGTATCCTCCTTACATCCATTTCCAGTTACG
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTTGTCGCTTCAATGATGTTCATGTGTGTGTCTCCTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TAGAATTCGTCCAGGTCTTCTTTGCTGGGAAATACC
GGTAAATATTGTTCTTATTAAGGATTAACGC	CGATGCCAGAGTCGTCAAAAAGATCATGGGCCATAAG
GGTAAATATTGTTCTTATTAAGGATTAACGC	CAGTCCCAGCCCTCAGTCAGAAGCATGCTGTTGA
GGTAAATATTGTTCTTATTAAGGATTAACGC	TCTAATTTGTCGTAATCTGCTGTCTGCATTTCGTCTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TGTTTCACGGATATAACATTTTACATCTGCGTTTGT
GGTAAATATTGTTCTTATTAAGGATTAACGC	GCAGCGCTGTCACCATCAATCTTCCCCGGGCATCGT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTTCCCTGGATGATTCGTTCATCCAGTTTTTTCTG
GGTAAATATTGTTCTTATTAAGGATAAACGC	TGTAAATATCGTTAAATCCTTCCCACTCTGCCACCTCTTCTA
GGTAAATATTGTTCTTATTAAGGATTAACGC	TCAATAGCCGTTGTCCTGCCTTTCGTGGTTGACCCGG
GGTAAATATTGTTCTTATTAAGGATTAACGC	AAGCAATTTTCCGTGTGGCACTGAGAAGATACAAATTTG
GGTAAATATTGTTCTTATTAAGGATTAACGC	GTGATGAGCTGGAAACAATTATTGATGGCGGTTGAAACA
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTTGTAGTTTTCCATGTGTTTACCTCCTAGGCTATTCCAGCCA
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTTAACCAACTCCGATAACGTCTGACTTGCTTTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TCTGCTGCCTGATAATTTTTTGTCAGCAGGTATTTC
GGTAAATATTGTTCTTATTAAGGATTAACGC	GACAATCTTCATCCATTTACCTGTCAGAACGCCTTCAT
GGTAAATATTGTTCTTATTAAGGATTAACGC	GTAATCTCTGCGCTGACCATGTGGCTCTGCGCTGT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TAAAACTTTGGCGGTAAACACTGTGGCCGCTCACAAT
GGTAAATATTGTTCTTATTAAGGATTAACAC	CGCTCCAGTCACCTGCAGCTCTGACCCCATCCAG
GGTAAATATTGTTCCTGTTCAGGGTTAACGA

>NZ_CP011391|1|1|137126-139197|CRT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTGATGACGTCGTCCAAGTCCGTATCAGGATCCGCATTTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	AAGTTTAGATTTCTTAAACATTTTTTTATTTCCTTTCCT
GGTAAATATTGTTCTTATTAAGGATTAACGC	AATATAATTCTTGGTTTGTAAGCTCATAAACAGGCATAT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TCCACGTGTTGCACCAGTAAGAACCAGAATCGTTTC
GGTAAATATTGTTCTTATTAAGGATTAACGC	GTTTTCGATTTTCAGGCTGTCCCGCTCCTGCTGCTC
GGTAAATATTGTTCTTATTAAGGATTAACGC	CTGCCATTTCTTTGATGATTCCCTGCGTCATTGCTTCA
GGTAAATATTGTTCTTATTAAGGATTAACGC	AAGTGTTTCTGAAGTTTAGATTCATTAAACATTGTTTTA
GGTAAATATTGTTCTTATTAAGGATTAACGC	AATCTGCTTCACGGACAGCTTTCTTCAGATTACG
GGTAAATATTGTTCTTATTAAGGATTAACGC	CTGGAGCTCTGCTAGCACGTCATCAAACTCCGGATC
GGTAAATATTGTTCTTATTAAGGATTAACGC	CTGAAGTTTTTGGTATCGTGCCTCGTTCAGGAAGTTG
GGTAAATATTGTTCTTATTAAGGATTAACGC	TGGTTGTATCCTCCTTACATCCATTTCCAGTTACG
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTTGTCGCTTCAATGATGTTCATGTGTGTGTCTCCTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TAGAATTCGTCCAGGTCTTCTTTGCTGGGAAATACC
GGTAAATATTGTTCTTATTAAGGATTAACGC	CGATGCCAGAGTCGTCAAAAAGATCATGGGCCATAAG
GGTAAATATTGTTCTTATTAAGGATTAACGC	CAGTCCCAGCCCTCAGTCAGAAGCATGCTGTTGA
GGTAAATATTGTTCTTATTAAGGATTAACGC	TCTAATTTGTCGTAATCTGCTGTCTGCATTTCGTCTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TGTTTCACGGATATAACATTTTACATCTGCGTTTGT
GGTAAATATTGTTCTTATTAAGGATTAACGC	GCAGCGCTGTCACCATCAATCTTCCCCGGGCATCGT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTTCCCTGGATGATTCGTTCATCCAGTTTTTTCTG
GGTAAATATTGTTCTTATTAAGGATAAACGC	TGTAAATATCGTTAAATCCTTCCCACTCTGCCACCTCTTCTA
GGTAAATATTGTTCTTATTAAGGATTAACGC	TCAATAGCCGTTGTCCTGCCTTTCGTGGTTGACCCGG
GGTAAATATTGTTCTTATTAAGGATTAACGC	AAGCAATTTTCCGTGTGGCACTGAGAAGATACAAATTTG
GGTAAATATTGTTCTTATTAAGGATTAACGC	GTGATGAGCTGGAAACAATTATTGATGGCGGTTGAAACA
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTTGTAGTTTTCCATGTGTTTACCTCCTAGGCTATTCCAGCCA
GGTAAATATTGTTCTTATTAAGGATTAACGC	TTTAACCAACTCCGATAACGTCTGACTTGCTTTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TCTGCTGCCTGATAATTTTTTGTCAGCAGGTATTTC
GGTAAATATTGTTCTTATTAAGGATTAACGC	GACAATCTTCATCCATTTACCTGTCAGAACGCCTTCAT
GGTAAATATTGTTCTTATTAAGGATTAACGC	GTAATCTCTGCGCTGACCATGTGGCTCTGCGCTGT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TAAAACTTTGGCGGTAAACACTGTGGCCGCTCACAAT
GGTAAATATTGTTCTTATTAAGGATTAACAC	CGCTCCAGTCACCTGCAGCTCTGACCCCATCCAG
GGTAAATATTGTTCCTGTTCAGGGTTAACGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011391.1\|WP_067554177.1\|129915_130119_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NZ_CP011391.1\|WP_067554221.1\|144694_145201_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NZ_CP011391.1\|WP_067554174.1\|127896_129210_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP011391.1\|WP_067554201.1\|139290_139551_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP011391.1\|WP_067554218.1\|144062_144695_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274212
NZ_CP011391.1\|WP_067554198.1\|135838_136933_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273919
NZ_CP011391.1\|WP_067554180.1\|130115_130544_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011391.1\|WP_067554170.1\|127105_127762_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011391.1\|WP_067554183.1\|130678_132061_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240548
NZ_CP011391.1\|WP_067554204.1\|139553_140543_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_CP011391.1\|WP_067554228.1\|147556_148795_-\|CRISPR-associated-DxTHG-motif-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|187863
NZ_CP011391.1\|WP_067554213.1\|141946_143104_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	gnl\|CDD\|224251
NZ_CP011391.1\|WP_067554192.1\|133638_134343_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350157
NZ_CP011391.1\|WP_067554195.1\|134339_135536_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP011391.1\|WP_067554215.1\|143103_144066_-\|hypothetical-protein	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	gnl\|CDD\|224483
NZ_CP011391.1\|WP_067554189.1\|132727_133516_-\|uridine-phosphorylase	unknown	unknown	gnl\|CDD\|350167
NZ_CP011391.1\|WP_158507653.1\|140539_141256_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|224499
NZ_CP011391.1\|WP_067554224.1\|145204_147544_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP011391.1\|WP_067554186.1\|132342_132735_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|223372
NZ_CP011391.1\|WP_067554210.1\|141233_141950_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011391.1\|WP_067554177.1\|129915_130119_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	5.79634e-26
NZ_CP011391.1\|WP_067554174.1\|127896_129210_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.66883e-170
NZ_CP011391.1\|WP_067554201.1\|139290_139551_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.02969e-17
NZ_CP011391.1\|WP_067554218.1\|144062_144695_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|274212	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3. Members of this CRISPR-associated (cas) gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm3, for CRISPR/cas Subtype Mtube, protein 3.	1.56615e-65
NZ_CP011391.1\|WP_067554198.1\|135838_136933_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	1.52451e-78
NZ_CP011391.1\|WP_067554221.1\|144694_145201_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	7.7643e-14
NZ_CP011391.1\|WP_067554183.1\|130678_132061_-\|MATE-family-efflux-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	1.06148e-104
NZ_CP011391.1\|WP_067554204.1\|139553_140543_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.87948e-91
NZ_CP011391.1\|WP_067554228.1\|147556_148795_-\|CRISPR-associated-DxTHG-motif-protein	gnl\|CDD\|187863	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family.	1.80885e-21
NZ_CP011391.1\|WP_067554213.1\|141946_143104_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	5.55062e-09
NZ_CP011391.1\|WP_158507653.1\|140539_141256_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.63123e-23
NZ_CP011391.1\|WP_067554195.1\|134339_135536_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP011391.1\|WP_067554189.1\|132727_133516_-\|uridine-phosphorylase	gnl\|CDD\|350167	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases. Uridine phosphorylase (UP) is specific for pyrimidines, and is involved in pyrimidine salvage and in the maintenance of uridine homeostasis. In addition to E. coli Udp, this subfamily includes Shewanella oneidensis MR-1 UP and Plasmodium falciparum purine nucleoside phosphorylase (PfPNP). PfPNP is an outlier in terms of genetic distance from the other families of PNPs. PfPNP is catalytically active for inosine and guanosine, and in addition, has a weak UP activity. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	3.98982e-129
NZ_CP011391.1\|WP_067554192.1\|133638_134343_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|350157	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP. Escherichia coli purine nucleoside phosphorylase (PNP)-I (or DeoD) accepts both 6-oxo and 6-amino purine nucleosides as substrates. Trichomonas vaginalis PNP has broad substrate specificity, having phosphorolytic catalytic activity with adenosine, inosine, and guanosine (with adenosine as the preferred substrate). This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	1.86524e-142
NZ_CP011391.1\|WP_067554224.1\|145204_147544_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	1.12232e-109
NZ_CP011391.1\|WP_067554186.1\|132342_132735_-\|cytidine-deaminase	gnl\|CDD\|223372	COG0295, Cdd, Cytidine deaminase [Nucleotide transport and metabolism].	3.05428e-45
NZ_CP011391.1\|WP_067554215.1\|143103_144066_-\|hypothetical-protein	gnl\|CDD\|224483	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.49646e-06

>NZ_CP011391.1|WP_067554198.1|135838_136933_+|PTS-transporter-subunit-EIIC
MKKLKSVGSAILNALSGSLVPLIPVLIGAAMFKTLLAVFGPDVLGWIHADSDLYILLSFVADAGFYFLPIYAGYTSATYFKVSGLLGMFLGAILIHPTFAALDQSLVVFGLTVPSLAYSGTILPILLSCWIMSYVYKGVERVIPKVLQDVFVPFLTILVMLPITLCLVAPLGTWLGQFICDFVLSLGSLGGIGTILSMALIGAFWQYIVMSGMHWIFITTIITILATGEVDALIFPACTASSFSIGGMCLGAFLALRGTEDKAKAMSCVIAQMIGGVTEPGLYGVGFQYKKPLAGMMAGGFCGALYAGITGVVCTNLVPVASLLVFLSFTGASAMNLVNEIIAAAIAFVVAAAVTFVLMKSGEK
>NZ_CP011391.1|WP_067554195.1|134339_135536_+|phosphopentomutase
MTRRTGAYRRIFVVVVDSFGAGGARDAAAFGDEGADTMGHIAQATPGWKIPVLMKLGLGSLRPLAHQTPDPAPVGRYGFLNEASAGKDTMTGHWEMMGLKIDTPFQTFGHFPPALIEALERETGRRVIGNRPASGTQILEELAPEEIATGHMIVYTSADSVLQICGNEETFGLQELYRCCEIARRLTMKPEWKVGRVIARPYVGKKPGEFVRTANRRDYALKPFGHTVLDSLKDAGFEVISVGKIRDIFDGEGITEAIHSDSSVQGMEQTIDLTKRDFTGLVFTNLVDFDAKWGHRRNVPGYAREVEAFDERLGELMQALRPDDLLLVTADHGNDPTWTGTDHTRERVPLLAWSPSMKQGGPLPEQDTFAAIGRLVAENFGVPVPEMAELKTQPAIEL
>NZ_CP011391.1|WP_067554192.1|133638_134343_+|purine-nucleoside-phosphorylase
MSTPHIQAEPGQIASTVLMPGDPLRAKYIAEHFLEHPVQVNSVRNMLGYTGKYNGKDVTVMGSGMGMPSIGIYSYELYNFYGVDTIIRIGSAGGLAPELELMDLVVGVAASTDSNYATQFNMPGIIAPTADFDLAMNAVSLCDELGVRVMAGNILSSDIFYNDQKDALLRWKSMGILAVEMEAAALYLNAARAGKKALCLLTISDKPLEGSGLSSQDRETGFTQMMKVALELVQ
>NZ_CP011391.1|WP_067554189.1|132727_133516_-|uridine-phosphorylase
MKYSQNGLPYHIGVSAEDIGRYVLLPGDPKRVKKIASHLDSARKVGDSREYETWTGMLDGEPVTVMSTGIGGPSAAIALEELSDLGAHTFIRVGTCGGIQPEVKSGDLVIATAAVRQDGTSREYAPLAWPATADFDVMSALHQAAPRAHLGVVQTKDSFYGQHDPDRMPVAGRLNGEWEAWKRLGVLGSEMECAALFTVAAYRKVRCGAVLLVMANQEREKTGLANPVVRDTEQAIEAAIRGMRMLLVRDREAAGLQETDRD
>NZ_CP011391.1|WP_067554186.1|132342_132735_-|cytidine-deaminase
MTDRRILEEAQSAAANAYVPYSHFPVAAVLELKDGTLLSGCNVENASYGLCMCAERNVLFMSVTCGVPKEEIASLTVYAPTESLTTPCGACRQVMAELLEPDTPVIVTNGTQEKRYTVRSLLPDSFMLAP
>NZ_CP011391.1|WP_067554183.1|130678_132061_-|MATE-family-efflux-transporter
MNDSAILGSGKLSSLLAKFAVPCIFSLIISCLYNIADQIFVGQGIGYEANAATGVVFPITVIGWGISLFFGDGGAAMLSMKMGENDRKSLPAIVGSTVMAILITGLVLIALCYLGGTGLLTVIGATEATLPMAWSYGVIIFAMMPLAMVQNGLASIIRADGSPEYAMGAMIVGAVINLIGDPLTIFVFHWGIQGAAIATIAGQFVSFLLCIGYLFRAKNFRLSWPSFLPKWHSLTGVMMLGTSSLITQLSIVVITILNNILLVHYGALSAYGSDIPLAAFVVLMKLFQIVLNIAIGLAAGAQPIVGYNYGSGKWDRVTHLFWLVMAWTFGLSLVCTMAFEFFPLFFVQLFGASSELYVEFACNCLRIYLCLLPLTCVQKGCAIFLQSIGHGKSSAFLAVLRDGLLIVFTLVVPMFLGLEGIFWAAPCADVIAFALTIPVMQTSLKKLKGDARVPVTQPAA
>NZ_CP011391.1|WP_067554180.1|130115_130544_+|hypothetical-protein
MKHRNLMTAVLGIMLMLAGLWAMKQLPVQENSWLRAICGMLTALGCGWFGHGLAGLVQNRILQPYPEIRQQMAIEAADERNIAVAARAKARAYDVMTFVFGALMVAFVFMQVDLVPIVMLVCTYLFVEITGIWYRIRYEREM
>NZ_CP011391.1|WP_067554177.1|129915_130119_+|helix-turn-helix-transcriptional-regulator
MKNCLEALRKERGITQEELARDLQVTRQTISSLEKGRYNPSIQLAFRIARHFHRTIEEVFIFEEEET
>NZ_CP011391.1|WP_067554174.1|127896_129210_-|group-II-intron-reverse-transcriptase/maturase
MRLSDLILESSNMEKAIRKVVSNRGSAGIDDMPVDEIRAWMEVNEDELAEQIREMKYKPSPVRRAYIPKPNGKKRPLGIPTVVDRVVQQATYQILYPIFDSTFSDSSFGFREGRSAHQAIERTLEYLNEGYEWVVDLDIEKFFDMVNHDKLISIIRLKVNEKETLHLIRSFLKAGVMEEGKLNRNDLGTPQGGNISPLLANIYLDVFDKELENRGLRFVRYADDVTIYCRSEMAANRVMRSVSSWLERKLFLKVSPTKTHVVRPPESTFLGFTFWKGRDGWKCKPANDRKQRLYKNMKELLCRRKAAAMPLSYLFTKVNQKVRGWINYFSIGSMKRFLIEFGQWLRHKIRVVIFKQWKRPKTLFKNLMILNKQFKTGFSKEEIRQTANSRLGLWRTTGWRTVNFILSPKVLALPNKEKERPGLIDPVGCYLNLQNKS
>NZ_CP011391.1|WP_067554170.1|127105_127762_+|hypothetical-protein
MKKLLTAAFSAALLFMAGCADSDTGAVKDTTESFLKAEHEGNLDEATKYLTGDATDMFESREDMRADLKGYEDQGVSNETLDQFVDAQIKAYTMVWEDSKIDDVQVGDDTATVLVTTKGIGMKDWENMTTSGLSAEVGSQWMDDNMSRIEEYKSSHTEEEYMAWYLDQVVPVYAQELVSRLDAEPRQTTNYRFSLEKTGDGWKISNVEIGTLEESDDQ
>NZ_CP011391.1|WP_067554201.1|139290_139551_-|CRISPR-associated-endonuclease-Cas2
MNVICVYDVDSAKCVKLMKVLRRYLFHVQDSVFQGVLTPKQFRVLQNELKELTSEKDSVIFYFTYNDKDLNTTSYGRAPEDRTIIM
>NZ_CP011391.1|WP_067554204.1|139553_140543_-|CRISPR-associated-endonuclease-Cas1
MNPVYLYKSGELKRKDSSLALESADGEEILIPIEQTESIFCFGEITFNKRLLGLLNRHSIPLLFFNYYGDCIGSFLPVTTRTGTCLIAQANAFQNESVRLMIAKSIQSAAFQNMINICKYYQKKDKDLNTVISSLMRLKGELTEADSVEEILLLEAKSKSEYYQIFDIILAGSGFRFGHRSKRPPATPVNSMISYGNTLLYGQLLAMLHQSRLVPEISFIHSVVKKGASLQYDLADIYKPFLVDRLLMRLVRKKEIKRQHFDQQENSCYMNKDGSRIFVAAFQQLLKTTVNIDGRSLSYKSIMMRDINRLVRFIQDPDSADLRFFEVGW
>NZ_CP011391.1|WP_158507653.1|140539_141256_-|CRISPR-associated-endoribonuclease-Cas6
MRLKVILDSDQITLPLNYKNLLQGVIYSSFKNEEYGSFLHNTGYQSGPKPFKLFVLSDLLGTFHIHERQITYSGKLEFYIGSLSNGFLETLYQRWLSAGSLRLGTNRLEISAMAIEDLPWFPDTKEVTIRTLSPVTAYRSENGKFQYYSPEESEFQTLCLQNIQEKSQAYFNYCQVPVFSITDVKQARKRIVHFKNTFYIAYAAELKVLTNFETLQLIWSAGLSAKNPAGFGMIQVLS
>NZ_CP011391.1|WP_067554210.1|141233_141950_-|hypothetical-protein
MITKGTYRVCFPAGAVFHENPSLMLYRDIMNYIRKLSCFNADKKCRDCPESGFCKYHQVSGGNFDWSPSLLIRSSVFYHQVAGPGEVMDFNFFFIGSGISFLPFIELFFQSHSHLHGIPMILKGFERTSMDETPLSAKGIRILTPVESADISSVLQEMVTCWNDKYQADIGLSLTARNRLENPVRVSMPGFRTGGREIRPKGYAGQVKELELPAFALETGIGKWNFMGGGRLETESDS
>NZ_CP011391.1|WP_067554213.1|141946_143104_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MAIYKTITPVHIGTGNEIPGFEYHWSGNRISRYLADNILKSIPPRQLLNTRMLEDLARYAGKTPEKKEAVYRQLQSFTDFGKLHPIYTCALNVEYPDEIIYKNVSEQIKTLDTAYIPGSTLKGAVENAFRYQLLKDHYDRIEPELPQFLQELGNRSVKEGFILTLLGERKGSDEFFRNLFGCLICQDVPFRNMEVLQGCRLGKTERNDIPIPYTEVISPAQETQGPALFVLDEKKLERMRENATAAQSLVLDSFNDSYLKKACTSYTLDMLQSDLTPDMKRYFEDQGFEYLYAFCQDLKRKIETSPEDTVYLRVGKYTNYFYKTVSWLVKTRSFRLYSEYFQQAFSPLGRSKKGASLDPRKMPSTRTVLWNYDNAWLLGFLEIRP
>NZ_CP011391.1|WP_067554215.1|143103_144066_-|hypothetical-protein
MMKTYQATFCAGSALTDLPSAQTIFGAICQILTDTEGEAPLAEYLDSFQDQPLMVHSSLFPEDLFPMPKRSIFSLAFVNESVHSSNPRNKLQAMAGYKKYKKIRYVSRKILENYILPNRFEQLQKDLLANPERFTLLESGILRLSSETSDYRQKTVLQTRNGSRGTTTEKDLFYTKTIYPDPAQKFSLYIKSDWPRERIEDLLMKLEIFGLGSRRTVGMNVFTLLGLKEIRLQTTGELQYLLSDCVPDEAVDLDRSCYGLQSAVFRGSKSYNGGYFTGRYTYLTPGSLINSVNRKGWTGMLVRDESQGKTVWHYGMGFVF
>NZ_CP011391.1|WP_067554218.1|144062_144695_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MLKKILRMNYELELLSGLHIGGSTDVFDIGGADSTIIKNPMTGEPYIPGSSIKGKIRSVLTMKYGQIDEKEQDYTLEDNKVFLSLFQPVEDLNPIQVSRAIFRDAVLTPESRDRLQQHLGAGNFTEIKAENKINPLKGKAENPRFIERVPASAVFEGEIILQIFDGDNEEELRRGLEEGIRLLELSYLGGSGTRGYGKIAINDTDFEEVS
>NZ_CP011391.1|WP_067554221.1|144694_145201_-|type-III-A-CRISPR-associated-protein-Csm2
MAYQDNKYRNDHGYNRNPGNYNNQRNNAVSFETVTVPLSVQYKDKAKLYLTDGVAQKTARQFVGAKITTHQLRKVLSQAKQAVTIMESGGSRFNEARNVLFMLLPMSAYNAGRLPAVKPLYLFLKANISEETLKGPEDISVFDSLMTSIVAYHKYEEEQNKNKSGRRS
>NZ_CP011391.1|WP_067554224.1|145204_147544_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MISQNILDAALGGLLHDIGKMGQRTLTRSDLTEQEKYMTPVHKGGYHTHLHAGYTSRFLQDILKQDSKFEAAVSSHHLNPPLNQPLSGYIQDADRLAAQIDRDDDIGDTDQATGEKSSFQQVRLNSIFSEIDFGQNRKDSKFRLSTLSSSSSPETGLPVSSKKEAAEEYAGLYQQLIDEILAEPQGLSSRDRHSFDRILGLLYEYASLVPASTYEGDRTFVSLYDHSKLTAAIGSCYAASDSDCFRLLEFDISGIQNFIFQVTEGGQQKTGIAKALRGRSLFISLVTDFIVHAYLHAFGMTQANILFSTGGGALLLLPDTEDYDRKLKATSQQLLRDLFDIFHTDITYVYASIRVTRDEFIRFKPDKAIELKSILEEEKTRKFSEIAESELFHEEPSTQKLCPLCEHVFTTQDICPICDIITRLSDFFVKNDDLYVVFSYSGQPELDDKDGVTFDIGPASFSLVNTKGLESLHDSFSYVETINRSRLGLTRYIANDVPLYPNGKSLRIQNFEEIAKLAPEANWGDPKLAILKMDVDNLGAIFAYGLPRETRSISKFLTLSRLMEVFFGKQLPEICQDVSLAVNPDLDSATDTMFYIDYAGGDDLVIIGPAAGILRLADEIHSKFLEFTHNENLTISGGVFIQRPQEPVRFGIQKAEGQLELSKSMPDKNSLTLLSTSIPFSQYHGLLQTVDACRGDIRESRISRTNFYRLMSVLDVDDFNEFSRRVPVLLYSLSRTVQDPGCRNHWVREISAIRSPEDMPALRRLVLIMKLAIMETREE
>NZ_CP011391.1|WP_067554228.1|147556_148795_-|CRISPR-associated-DxTHG-motif-protein
MQYFTFLGTGGKNGYREACTYFENEPEEIEIARYLQEVIYKKHADEISEVLVFITPEVKEKTFPELRALLPDVKITEIMLPADVDTEDFVKLLQEHLKQDGEALFDVTHSFRHLPMKFLFALRYAEQMKNTKIRHIYYGMMKYYESAQEECCITDVLNDYETQKISSLLSQFDQSLTAQVADWEGFVTTDQKVELFLQRLADFNEMLELCEFDACLNIAQRITETARSLTKDPDKYFMLLPLTQKISEKLRGVLSHPKTKDQKSALIRVLLAHHRFQNAVTFTDEFFREELIRTALGNISPKSSMAEVASLLHLPDWLRKDFGYTCSQYIRDSLILGKDYVPPKWYDMESYVPFSGAGVKKIRFVTGNPEAQQTILDFFSEVRNPINHGNTLKNKERLPYLTEKMLSIVDAL

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Crispr_ID: NZ_CP011391_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011391_2

149152-149859

TypeIII

Consensus_repeat	Method
GGTAAATATTGTTCTTATTAAGGATTAACGC	CRISPRCasFinder
GGTAAATATTGTTCTTATTAAGGATTAACGC	CRT

10 spacers

csx1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,cas1,cas2

The CRISPR arrays of NZ_CP011391_2

>merge|NZ_CP011391|2|149152-149859|CRISPRCasFinder,CRT
GGTAAATATTGTTCTTATTAAGGATTAACGCTAACCAAGACTTTTCCATCTTTGTGGTAAACTGTGATATTTGGTAAATATTGTTCTTATTAAGGATTAACGCCGTCAAAGAGATATTCACGGATCTTTACGTCTTGTGTGGTAAATATTGTTCTTATTAAGGATTAACGCCCGCCATTTCTGCAATTTCCTAAGCGTCTTCCGGGTAAATATTGTTCTTATTAAGGATTAACGCATGTTTTCTTTATCAGTCGCTTTAGCAAAGTTGTAAGGTAAATATTGTTCTTGTTAAGGATTAACGCGGTACATAACTGCATTTTCTACAGTCTCATAGGTTGTGGTAAATATTATTCTTATTAAGGATTAACGCTTCCACATTTCATAGGCAGCAGATTCCATCTTGTACGGTAAATATTGTTCTTATTAAGGATTAACGCTGGAAATCACGTCTTTCCATCCATCGGAATGCTTGTCCGGTAAATATTGTTCTTATTAAGGATTAACGCGTCATAGTTTCGAGGGTTTTGAGCTCTCTGAAGAGCGGTAAATATTGTTCTTATTAAGGATTAACGCCAGTTATAGGCTTTGATAGCCTTAGCCACAAGGTCAGTGGTAAATACTGTTCTTATTAAGGATTAACGCGACAAATCCGTACCACTTATAACTGAAGACAACGTGGTAAATATTGTTCCTATTAAGGATTAAGGA

>NZ_CP011391|2|2|149152-149859|CRISPRCasFinder
GGTAAATATTGTTCTTATTAAGGATTAACGC	TAACCAAGACTTTTCCATCTTTGTGGTAAACTGTGATATTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	CGTCAAAGAGATATTCACGGATCTTTACGTCTTGTGT
GGTAAATATTGTTCTTATTAAGGATTAACGC	CCGCCATTTCTGCAATTTCCTAAGCGTCTTCCG
GGTAAATATTGTTCTTATTAAGGATTAACGC	ATGTTTTCTTTATCAGTCGCTTTAGCAAAGTTGTAA
GGTAAATATTGTTCTTGTTAAGGATTAACGC	GGTACATAACTGCATTTTCTACAGTCTCATAGGTTGT
GGTAAATATTATTCTTATTAAGGATTAACGC	TTCCACATTTCATAGGCAGCAGATTCCATCTTGTAC
GGTAAATATTGTTCTTATTAAGGATTAACGC	TGGAAATCACGTCTTTCCATCCATCGGAATGCTTGTCC
GGTAAATATTGTTCTTATTAAGGATTAACGC	GTCATAGTTTCGAGGGTTTTGAGCTCTCTGAAGAGC
GGTAAATATTGTTCTTATTAAGGATTAACGC	CAGTTATAGGCTTTGATAGCCTTAGCCACAAGGTCAGT
GGTAAATACTGTTCTTATTAAGGATTAACGC	GACAAATCCGTACCACTTATAACTGAAGACAACGT
GGTAAATATTGTTCCTATTAAGGATTAAGGA

>NZ_CP011391|2|2|149152-149859|CRT
GGTAAATATTGTTCTTATTAAGGATTAACGC	TAACCAAGACTTTTCCATCTTTGTGGTAAACTGTGATATTT
GGTAAATATTGTTCTTATTAAGGATTAACGC	CGTCAAAGAGATATTCACGGATCTTTACGTCTTGTGT
GGTAAATATTGTTCTTATTAAGGATTAACGC	CCGCCATTTCTGCAATTTCCTAAGCGTCTTCCG
GGTAAATATTGTTCTTATTAAGGATTAACGC	ATGTTTTCTTTATCAGTCGCTTTAGCAAAGTTGTAA
GGTAAATATTGTTCTTGTTAAGGATTAACGC	GGTACATAACTGCATTTTCTACAGTCTCATAGGTTGT
GGTAAATATTATTCTTATTAAGGATTAACGC	TTCCACATTTCATAGGCAGCAGATTCCATCTTGTAC
GGTAAATATTGTTCTTATTAAGGATTAACGC	TGGAAATCACGTCTTTCCATCCATCGGAATGCTTGTCC
GGTAAATATTGTTCTTATTAAGGATTAACGC	GTCATAGTTTCGAGGGTTTTGAGCTCTCTGAAGAGC
GGTAAATATTGTTCTTATTAAGGATTAACGC	CAGTTATAGGCTTTGATAGCCTTAGCCACAAGGTCAGT
GGTAAATACTGTTCTTATTAAGGATTAACGC	GACAAATCCGTACCACTTATAACTGAAGACAACGT
GGTAAATATTGTTCCTATTAAGGATTAAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011391.1\|WP_067554221.1\|144694_145201_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NZ_CP011391.1\|WP_067554213.1\|141946_143104_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	gnl\|CDD\|224251
NZ_CP011391.1\|WP_067554235.1\|150306_150909_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181359
NZ_CP011391.1\|WP_067554251.1\|153896_155660_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379049
NZ_CP011391.1\|WP_067554201.1\|139290_139551_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP011391.1\|WP_067554218.1\|144062_144695_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274212
NZ_CP011391.1\|WP_067554252.1\|156210_156393_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011391.1\|WP_067554210.1\|141233_141950_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011391.1\|WP_067554248.1\|152593_153481_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP011391.1\|WP_067554245.1\|152297_152597_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP011391.1\|WP_067554204.1\|139553_140543_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_CP011391.1\|WP_067554228.1\|147556_148795_-\|CRISPR-associated-DxTHG-motif-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|187863
NZ_CP011391.1\|WP_158507653.1\|140539_141256_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|224499
NZ_CP011391.1\|WP_067554215.1\|143103_144066_-\|hypothetical-protein	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	gnl\|CDD\|224483
NZ_CP011391.1\|WP_067554240.1\|151611_152031_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341404
NZ_CP011391.1\|WP_067554224.1\|145204_147544_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP011391.1\|WP_158507655.1\|151116_151446_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380313
NZ_CP011391.1\|WP_067554256.1\|159443_160526_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP011391.1\|WP_082743156.1\|158144_159443_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NZ_CP011391.1\|WP_082743155.1\|157176_158148_+\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849

Protein	Function_ID	Function_description	E-value
NZ_CP011391.1\|WP_067554213.1\|141946_143104_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	5.55062e-09
NZ_CP011391.1\|WP_067554235.1\|150306_150909_-\|hypothetical-protein	gnl\|CDD\|181359	PRK08293, PRK08293, 3-hydroxyacyl-CoA dehydrogenase.	9.77495e-54
NZ_CP011391.1\|WP_067554251.1\|153896_155660_+\|AAA-family-ATPase	gnl\|CDD\|379049	pfam13173, AAA_14, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	1.49926e-09
NZ_CP011391.1\|WP_067554201.1\|139290_139551_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.02969e-17
NZ_CP011391.1\|WP_067554218.1\|144062_144695_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|274212	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3. Members of this CRISPR-associated (cas) gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm3, for CRISPR/cas Subtype Mtube, protein 3.	1.56615e-65
NZ_CP011391.1\|WP_067554221.1\|144694_145201_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	7.7643e-14
NZ_CP011391.1\|WP_067554248.1\|152593_153481_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.89457e-63
NZ_CP011391.1\|WP_067554245.1\|152297_152597_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.05658e-08
NZ_CP011391.1\|WP_067554204.1\|139553_140543_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.87948e-91
NZ_CP011391.1\|WP_067554228.1\|147556_148795_-\|CRISPR-associated-DxTHG-motif-protein	gnl\|CDD\|187863	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family.	1.80885e-21
NZ_CP011391.1\|WP_158507653.1\|140539_141256_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.63123e-23
NZ_CP011391.1\|WP_067554215.1\|143103_144066_-\|hypothetical-protein	gnl\|CDD\|224483	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.49646e-06
NZ_CP011391.1\|WP_067554240.1\|151611_152031_-\|CBS-domain-containing-protein	gnl\|CDD\|341404	cd09834, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	4.81985e-45
NZ_CP011391.1\|WP_067554224.1\|145204_147544_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	1.12232e-109
NZ_CP011391.1\|WP_158507655.1\|151116_151446_-\|hypothetical-protein	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	9.65563e-06
NZ_CP011391.1\|WP_067554256.1\|159443_160526_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP011391.1\|WP_082743156.1\|158144_159443_+\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	2.56954e-171
NZ_CP011391.1\|WP_082743155.1\|157176_158148_+\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.3306e-146

>NZ_CP011391.1|WP_067554228.1|147556_148795_-|CRISPR-associated-DxTHG-motif-protein
MQYFTFLGTGGKNGYREACTYFENEPEEIEIARYLQEVIYKKHADEISEVLVFITPEVKEKTFPELRALLPDVKITEIMLPADVDTEDFVKLLQEHLKQDGEALFDVTHSFRHLPMKFLFALRYAEQMKNTKIRHIYYGMMKYYESAQEECCITDVLNDYETQKISSLLSQFDQSLTAQVADWEGFVTTDQKVELFLQRLADFNEMLELCEFDACLNIAQRITETARSLTKDPDKYFMLLPLTQKISEKLRGVLSHPKTKDQKSALIRVLLAHHRFQNAVTFTDEFFREELIRTALGNISPKSSMAEVASLLHLPDWLRKDFGYTCSQYIRDSLILGKDYVPPKWYDMESYVPFSGAGVKKIRFVTGNPEAQQTILDFFSEVRNPINHGNTLKNKERLPYLTEKMLSIVDAL
>NZ_CP011391.1|WP_067554224.1|145204_147544_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MISQNILDAALGGLLHDIGKMGQRTLTRSDLTEQEKYMTPVHKGGYHTHLHAGYTSRFLQDILKQDSKFEAAVSSHHLNPPLNQPLSGYIQDADRLAAQIDRDDDIGDTDQATGEKSSFQQVRLNSIFSEIDFGQNRKDSKFRLSTLSSSSSPETGLPVSSKKEAAEEYAGLYQQLIDEILAEPQGLSSRDRHSFDRILGLLYEYASLVPASTYEGDRTFVSLYDHSKLTAAIGSCYAASDSDCFRLLEFDISGIQNFIFQVTEGGQQKTGIAKALRGRSLFISLVTDFIVHAYLHAFGMTQANILFSTGGGALLLLPDTEDYDRKLKATSQQLLRDLFDIFHTDITYVYASIRVTRDEFIRFKPDKAIELKSILEEEKTRKFSEIAESELFHEEPSTQKLCPLCEHVFTTQDICPICDIITRLSDFFVKNDDLYVVFSYSGQPELDDKDGVTFDIGPASFSLVNTKGLESLHDSFSYVETINRSRLGLTRYIANDVPLYPNGKSLRIQNFEEIAKLAPEANWGDPKLAILKMDVDNLGAIFAYGLPRETRSISKFLTLSRLMEVFFGKQLPEICQDVSLAVNPDLDSATDTMFYIDYAGGDDLVIIGPAAGILRLADEIHSKFLEFTHNENLTISGGVFIQRPQEPVRFGIQKAEGQLELSKSMPDKNSLTLLSTSIPFSQYHGLLQTVDACRGDIRESRISRTNFYRLMSVLDVDDFNEFSRRVPVLLYSLSRTVQDPGCRNHWVREISAIRSPEDMPALRRLVLIMKLAIMETREE
>NZ_CP011391.1|WP_067554221.1|144694_145201_-|type-III-A-CRISPR-associated-protein-Csm2
MAYQDNKYRNDHGYNRNPGNYNNQRNNAVSFETVTVPLSVQYKDKAKLYLTDGVAQKTARQFVGAKITTHQLRKVLSQAKQAVTIMESGGSRFNEARNVLFMLLPMSAYNAGRLPAVKPLYLFLKANISEETLKGPEDISVFDSLMTSIVAYHKYEEEQNKNKSGRRS
>NZ_CP011391.1|WP_067554218.1|144062_144695_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MLKKILRMNYELELLSGLHIGGSTDVFDIGGADSTIIKNPMTGEPYIPGSSIKGKIRSVLTMKYGQIDEKEQDYTLEDNKVFLSLFQPVEDLNPIQVSRAIFRDAVLTPESRDRLQQHLGAGNFTEIKAENKINPLKGKAENPRFIERVPASAVFEGEIILQIFDGDNEEELRRGLEEGIRLLELSYLGGSGTRGYGKIAINDTDFEEVS
>NZ_CP011391.1|WP_067554215.1|143103_144066_-|hypothetical-protein
MMKTYQATFCAGSALTDLPSAQTIFGAICQILTDTEGEAPLAEYLDSFQDQPLMVHSSLFPEDLFPMPKRSIFSLAFVNESVHSSNPRNKLQAMAGYKKYKKIRYVSRKILENYILPNRFEQLQKDLLANPERFTLLESGILRLSSETSDYRQKTVLQTRNGSRGTTTEKDLFYTKTIYPDPAQKFSLYIKSDWPRERIEDLLMKLEIFGLGSRRTVGMNVFTLLGLKEIRLQTTGELQYLLSDCVPDEAVDLDRSCYGLQSAVFRGSKSYNGGYFTGRYTYLTPGSLINSVNRKGWTGMLVRDESQGKTVWHYGMGFVF
>NZ_CP011391.1|WP_067554213.1|141946_143104_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MAIYKTITPVHIGTGNEIPGFEYHWSGNRISRYLADNILKSIPPRQLLNTRMLEDLARYAGKTPEKKEAVYRQLQSFTDFGKLHPIYTCALNVEYPDEIIYKNVSEQIKTLDTAYIPGSTLKGAVENAFRYQLLKDHYDRIEPELPQFLQELGNRSVKEGFILTLLGERKGSDEFFRNLFGCLICQDVPFRNMEVLQGCRLGKTERNDIPIPYTEVISPAQETQGPALFVLDEKKLERMRENATAAQSLVLDSFNDSYLKKACTSYTLDMLQSDLTPDMKRYFEDQGFEYLYAFCQDLKRKIETSPEDTVYLRVGKYTNYFYKTVSWLVKTRSFRLYSEYFQQAFSPLGRSKKGASLDPRKMPSTRTVLWNYDNAWLLGFLEIRP
>NZ_CP011391.1|WP_067554210.1|141233_141950_-|hypothetical-protein
MITKGTYRVCFPAGAVFHENPSLMLYRDIMNYIRKLSCFNADKKCRDCPESGFCKYHQVSGGNFDWSPSLLIRSSVFYHQVAGPGEVMDFNFFFIGSGISFLPFIELFFQSHSHLHGIPMILKGFERTSMDETPLSAKGIRILTPVESADISSVLQEMVTCWNDKYQADIGLSLTARNRLENPVRVSMPGFRTGGREIRPKGYAGQVKELELPAFALETGIGKWNFMGGGRLETESDS
>NZ_CP011391.1|WP_158507653.1|140539_141256_-|CRISPR-associated-endoribonuclease-Cas6
MRLKVILDSDQITLPLNYKNLLQGVIYSSFKNEEYGSFLHNTGYQSGPKPFKLFVLSDLLGTFHIHERQITYSGKLEFYIGSLSNGFLETLYQRWLSAGSLRLGTNRLEISAMAIEDLPWFPDTKEVTIRTLSPVTAYRSENGKFQYYSPEESEFQTLCLQNIQEKSQAYFNYCQVPVFSITDVKQARKRIVHFKNTFYIAYAAELKVLTNFETLQLIWSAGLSAKNPAGFGMIQVLS
>NZ_CP011391.1|WP_067554204.1|139553_140543_-|CRISPR-associated-endonuclease-Cas1
MNPVYLYKSGELKRKDSSLALESADGEEILIPIEQTESIFCFGEITFNKRLLGLLNRHSIPLLFFNYYGDCIGSFLPVTTRTGTCLIAQANAFQNESVRLMIAKSIQSAAFQNMINICKYYQKKDKDLNTVISSLMRLKGELTEADSVEEILLLEAKSKSEYYQIFDIILAGSGFRFGHRSKRPPATPVNSMISYGNTLLYGQLLAMLHQSRLVPEISFIHSVVKKGASLQYDLADIYKPFLVDRLLMRLVRKKEIKRQHFDQQENSCYMNKDGSRIFVAAFQQLLKTTVNIDGRSLSYKSIMMRDINRLVRFIQDPDSADLRFFEVGW
>NZ_CP011391.1|WP_067554201.1|139290_139551_-|CRISPR-associated-endonuclease-Cas2
MNVICVYDVDSAKCVKLMKVLRRYLFHVQDSVFQGVLTPKQFRVLQNELKELTSEKDSVIFYFTYNDKDLNTTSYGRAPEDRTIIM
>NZ_CP011391.1|WP_067554235.1|150306_150909_-|hypothetical-protein
MEARSTTKGAICGFDMTFRIHTVSSITRTKPRIEKLEQIYSAVQSGQLPPALAGLRDSVQVIKSAGDKIDYEADLAKALADAGLVNECLPEVLSTKQDFFKKAAPFITKEIVVATNNSSLLPSQMTPDVSYPENFLAMHFANMIWQENLCEIMPSMLTAPGTTEKAKDYALKMGMCPIVMNKEHAGYLLNSLLIPFLNVA
>NZ_CP011391.1|WP_158507655.1|151116_151446_-|hypothetical-protein
MTQAGKAPSWANAQAWKVYIATGDTLARIRARHEEMDKEGDYGHSFFRVMHLTEWAKQPRHIMADWGRQARRLHGVEVTRFLQGECQSLRCPDRYLSGDSQKLHSLICV
>NZ_CP011391.1|WP_067554240.1|151611_152031_-|CBS-domain-containing-protein
MGQNLFFFLTNKKQTSFLYDNLSLRDGMWLMREHGYTSVPVVAPDGEYKGAVTEGDFLYYLTDHPDTDLDTITIGEILRPGFMHAVPFNVSMGELLAASLEQNFVPVVDDRNIFIGIVTRKNILAYLMRDRNVKDETTE
>NZ_CP011391.1|WP_067554245.1|152297_152597_+|transposase
MAKKRKTFTDEFKQDAVQFLTNHPEMTVIECAETLGVGRSTLERWRADFNRSGLSAVTAHNNDKEEKDLLKENVRLQRELRDSQEALKILKKAISILGN
>NZ_CP011391.1|WP_067554248.1|152593_153481_+|IS3-family-transposase
MKQVEYELVAEDHKAGIQFSVSRVLHKLGLSRSGYYDYLKRKPSHQEKRRHDVKKAILQIYEDSHENYGAPKIAKILNSGGISITERTVGVYMRQMGIRAQWVKPHTQTTIRSDFSGNLKNLLDRNFSPAHPNCVWCTDITYIHTKLDGFVYLACIMDLYSRRIISWKLTKTLDTGPILKSIEEARKRRPSQEPIMIHTDRGIHYTCDLYRKLTRGMIRSYSAKGVPYDNACIESFHSLIKREWLSRFDIQNYRHAYRLVSQYIDDWYNPERIHSHCGYMSPAEYEVMFQRTSTD
>NZ_CP011391.1|WP_067554251.1|153896_155660_+|AAA-family-ATPase
MSTADELRARIAELPRGGLTVKNVNGHRYHYHRIVENGKRREIYVPEAEVPVLSEEIHERRKLEKQLRQLTGKNPGRSESEEFLCTVLTGKALKSFVEPVKGWNKRTCFSQLQEYVSSPPQDKVLILCGLRRTGKTTMLRQLIAEMKEDELNRTAYVQLVPGRTLADLNRDLKRMQSLGITVVLIDEVTLISDFIDGAALLPDIFASSGMHIVLSGTDSLSFMLAHSGQLYDRCRIIHTTWISFGEFARVLGIRDVDTYIRYGGTMTMSGTRYNPEDSAFRSLRAADEYVDSAIADNIQHSLRCWQNGGHFRNLQDLYEQGELTGAVNRIIEDVNHRFTIEVLTRAFQSHDLALSARNLRKDRKKPNDILDHIDRQAVTDRLKEWLMIAEEEEMTVGIEQVHCQEIHEYLETLDLIQEVEIRTIPQSCRKRYRTLVSQPGLRYAQASALIQALSEDPVIETLNIRERSALKQRILSEIQGRMLEDIVLLETKMHWPEKEVFVLQFALGEFDMVIFDPEKLECEVFEIKHSQVRTREQARHLLDPENRRKTEFRYGPITRKTVLYRGETCEEDGIRYQNVEEYLMQAG
>NZ_CP011391.1|WP_067554252.1|156210_156393_-|hypothetical-protein
MDIYMILQLLANLCVIIEFVRPLVWSLLPCKISVTFQVSIIRNNKKHDQCSRSDRALDDC
>NZ_CP011391.1|WP_082743155.1|157176_158148_+|aspartate-carbamoyltransferase-catalytic-subunit
MNKLSLLSVRDLSVHEILQILQEARIFNSSQKDWHLPAVNALVANLFFEPSTRTHFSFESAEFQLGCKVADFSASSSSVTKGESLYDTARTFEAIGYKVLVIRHPDDRYYERLRDITIPILNAGDGAGDHPTQCLLDLYTMWEEFGSFEGLKVVICGDIKHSRVAASNKEALDRLGADVRFAGPAQWRREGYPVMDFDQAVEWADVVMMLRIQKERGAMADMPNREYLTRYGLTMERASRMKPGAIIMHPAPVNRDVEIDSRLVEAPQSRIFRQMTNGVLIRKAVLKRAFGYPPFREETGDRGQSRTADKQNRDHIKGKKGTE
>NZ_CP011391.1|WP_082743156.1|158144_159443_+|dihydroorotase
MTQKRLIRNASVISGGRRIQADVLFDDRILAVGENLPADENTRVTDARGLTLIPGLVDVHVHLREPGREAKETIADGTAAAAHGGFTTVFAMPNVLPFPSTVRTVEPYQRLLEEKGRVRALPYGTITVDEAGATPTDYAALRELGVHWFSDDGVGVDSAAVMRRCLEAAREADVLFACHTEDMNYRQPGASVHDSPVVTSRGWIGIPSACESAQLIRDLKLLKETGGRYHTCHVSAKESVDALREAKAAGQDVTGEVTAHHLLLEDKDVQGPMWKMNPPLRSHEDRMALIEGLESGTLDFIANDHAPHTEEEKNQPMDKAPFGIVSLETAFPLLYTEFVKGGRWSLEQLVHWMSTAPARRFGLEGTGDILPGYRADLVLVDENRPGIIDKTTFLSRGKNTPFDKWPTACTIAETICEGRTVWRDTETEKKGS
>NZ_CP011391.1|WP_067554256.1|159443_160526_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MMERLLILEDGSVYRGQGFGSDDLKTGELVFNTSMTGYQEILTDNSYCGQIVMMTYPLIGNYGINRDDYESIEPAVFGFVTRDLCQSPNNWRSQETLDDFLKAHNIPGIYDVDTRAITRKLRNKGTMRAMLANPDTDIEAAVRQLQETDYLHDQVARVSSSKIFPIPNRGHKVVLMDFGAKLGIVRELSRRGCDLIVVPWDTDAQTILSYHPDGVMLSNGPGDPEDVPQAIETIRQLMGKTVIFGICLGHQLISLACGAKTYKLKFGHRGANHPVVDLETGKVDITSQNHGFAVDIDSLADTELELTHKALNDGSCEGVRHKELPVFSVQFHPEASAGPEDTAYLFDKFVAMMDKEGRHA

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Crispr_ID: NZ_CP011391_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011391_3

1831513-1831606

Orphan

Consensus_repeat	Method
CAAACATTGGTGGTGACGCCCGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011391_3

>merge|NZ_CP011391|3|1831513-1831606|CRISPRCasFinder
CAAACATTGGTGGTGACGCCCGTACTCCACTCTCCATCATCCGCACAATCCTGCACAGTCCCCAATCCCCCAAACATTGGTGGTGACGTCCGTA

>NZ_CP011391|3|3|1831513-1831606|CRISPRCasFinder
CAAACATTGGTGGTGACGCCCGTA	CTCCACTCTCCATCATCCGCACAATCCTGCACAGTCCCCAATCCCC
CAAACATTGGTGGTGACGTCCGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011391.1\|WP_067558468.1\|1831648_1832767_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011391.1\|WP_067558473.1\|1833867_1835445_-\|Na/Pi-cotransporter-family-protein	unknown	unknown	gnl\|CDD\|224202
NZ_CP011391.1\|WP_067558477.1\|1837424_1837697_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011391.1\|WP_067554381.1\|1828244_1829246_-\|IS1595-family-transposase	unknown	unknown	gnl\|CDD\|372296
NZ_CP011391.1\|WP_067558465.1\|1829361_1830711_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP011391.1\|WP_067558484.1\|1838707_1839427_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP011391.1\|WP_067558457.1\|1825189_1825699_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380121
NZ_CP011391.1\|WP_067558449.1\|1821928_1822792_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NZ_CP011391.1\|WP_067560205.1\|1840592_1841258_-\|UDP-N-acetylglucosamine-pyrophosphorylase	unknown	unknown	gnl\|CDD\|100060
NZ_CP011391.1\|WP_067558454.1\|1823771_1825085_-\|H(+)-transporting-ATPase	unknown	unknown	gnl\|CDD\|273349
NZ_CP011391.1\|WP_067558443.1\|1820025_1820985_-\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|224398
NZ_CP011391.1\|WP_067558487.1\|1839430_1840267_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270345
NZ_CP011391.1\|WP_067558490.1\|1841257_1841641_-\|DUF2752-domain-containing-protein	unknown	unknown	gnl\|CDD\|378499
NZ_CP011391.1\|WP_145907631.1\|1825735_1827412_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379070
NZ_CP011391.1\|WP_067558462.1\|1827502_1828195_-\|DUF3800-domain-containing-protein	unknown	unknown	unknown
NZ_CP011391.1\|WP_067558480.1\|1837957_1838698_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP011391.1\|WP_082743342.1\|1832929_1833703_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP011391.1\|WP_067558446.1\|1820981_1821932_-\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|132873
NZ_CP011391.1\|WP_067558475.1\|1835724_1837311_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|293734
NZ_CP011391.1\|WP_067558451.1\|1823054_1823729_-\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643

Protein	Function_ID	Function_description	E-value
NZ_CP011391.1\|WP_067558473.1\|1833867_1835445_-\|Na/Pi-cotransporter-family-protein	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	2.34326e-93
NZ_CP011391.1\|WP_067558487.1\|1839430_1840267_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270345	cd13627, PBP2_AA_binding_like_2, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold. This putative amino acid-binding protein belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.98048e-97
NZ_CP011391.1\|WP_067554381.1\|1828244_1829246_-\|IS1595-family-transposase	gnl\|CDD\|372296	pfam12760, Zn_Tnp_IS1595, Transposase zinc-ribbon domain. This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It is likely a zinc-binding beta ribbon domain that could bind the DNA.	3.05629e-10
NZ_CP011391.1\|WP_067558465.1\|1829361_1830711_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	9.79111e-133
NZ_CP011391.1\|WP_067558484.1\|1838707_1839427_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	6.7396e-73
NZ_CP011391.1\|WP_067558457.1\|1825189_1825699_+\|hypothetical-protein	gnl\|CDD\|380121	pfam18143, HAD_SAK_2, HAD domain in Swiss Army Knife RNA repair proteins. Family of HAD domain phophoesterases observed in large eukaryotic proteins with predicted role in RNA repair, the so-called 'Swiss Army Knife' repair proteins. May be involved in phosphate group removal during RNA re-ligation.	2.33854e-12
NZ_CP011391.1\|WP_067558449.1\|1821928_1822792_-\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.15716e-122
NZ_CP011391.1\|WP_067560205.1\|1840592_1841258_-\|UDP-N-acetylglucosamine-pyrophosphorylase	gnl\|CDD\|100060	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.	2.74835e-76
NZ_CP011391.1\|WP_145907631.1\|1825735_1827412_+\|hypothetical-protein	gnl\|CDD\|379070	pfam13200, DUF4015, Putative glycosyl hydrolase domain. This domain is related to other known glycosyl hydrolases suggesting this domain is also involved in carbohydrate break down.	2.07286e-69
NZ_CP011391.1\|WP_067558443.1\|1820025_1820985_-\|DNA-binding-protein-WhiA	gnl\|CDD\|224398	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown].	6.46559e-82
NZ_CP011391.1\|WP_067558490.1\|1841257_1841641_-\|DUF2752-domain-containing-protein	gnl\|CDD\|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	4.58644e-12
NZ_CP011391.1\|WP_067558454.1\|1823771_1825085_-\|H(+)-transporting-ATPase	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	1.05125e-79
NZ_CP011391.1\|WP_067558480.1\|1837957_1838698_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	6.68346e-147
NZ_CP011391.1\|WP_082743342.1\|1832929_1833703_-\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	4.83958e-17
NZ_CP011391.1\|WP_067558446.1\|1820981_1821932_-\|YvcK-family-protein	gnl\|CDD\|132873	cd07187, YvcK_like, family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.	3.27455e-116
NZ_CP011391.1\|WP_067558475.1\|1835724_1837311_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|293734	cd16010, iPGM, 2 3 bisphosphoglycerate independent phosphoglycerate mutase iPGM. The 2,3-diphosphoglycerate- independent phosphoglycerate mutase (iPGM) catalyzes the interconversion of 3-phosphoglycerate (3PGA) and 2-phosphoglycerate (2PGA). They are the predominant PGM in plants and some other bacteria, including endospore forming Gram-positive bacteria and their close relatives. The two steps catalysis is a phosphatase reaction removing the phosphate from 2- or 3-phosphoglycerate, generating an enzyme-bound phosphoserine intermediate, followed by a phosphotransferase reaction as the phosphate is transferred from the enzyme back to the glycerate moiety. The iPGM exists as a dimer, each monomer binding 2 magnesium atoms, which are essential for enzymatic activity.	0
NZ_CP011391.1\|WP_067558451.1\|1823054_1823729_-\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	2.73112e-44

>NZ_CP011391.1|WP_067558465.1|1829361_1830711_-|group-II-intron-reverse-transcriptase/maturase
MNQTRLIQPEDLSTQEIFSMENLTNACRQVRRNNGAAGVDGVKARELPVCPGEYWEQLREQILDRSYKPLPAKRTDIPKPDGSMRGLNVPAARDRVVQACLASYLDYRKDLEMSNSSYGFRKNRRCEQAILKGLEFMNDGYDWIVDIDLRKFFDTVDQDRLIRLIDNLFHNRDVTSLTRKFVRAGVMIDGRLVRTERGIPQGGPLSPVLANIYLDQADKELESRGLRFTRYADDMLIYVKSEAAANRVMKSFSNYLEKKLKLEVNASKSKVARPDEVKYLGFGFKRNKREWKAIPHEKSIHEFEQKIMKLTKRNWSVSLEERIEKINQVIRGWSNYFRCAWLYKETVRKLDSKLRRRIRAIIWKQWKSIRKKEESLVRLGCPRDKAHSYACARQGYVRCATTFLNKYIRNIHLKKKGLLSMEEYFDTVAERFMKTFVRTAQCRTACWVV
>NZ_CP011391.1|WP_067554381.1|1828244_1829246_-|IS1595-family-transposase
MFKKSLFKDLTFADIHTQYSDPHDAERFFFDLKWKDGFVCSKCGHTHYTTVVRKNGSLRTVYQCAHCGHQESVTAGTALESTKAPLFSWILVMFAYVISKTGTSAKYISDLTGVSYHTTKLMLRKIKQAQKQDNETHIAVDCDAIELDVFSYGGKKHGKRGWGAEGKVNVAAAVIKHYVWDDMDGDEEVFEATDAVKFRIVHSENKAELKKFLEEEVPSDCVVHCDRSSSNLALDIAGKLVDAQKFEVDTDHLSSLDHIISNFRSKVQGTAHGIALQFLENELADFEWKLSRRKWKKKSIFASLGRTLISGAHQTRQGMIDYFKDVQKQLVAA
>NZ_CP011391.1|WP_067558462.1|1827502_1828195_-|DUF3800-domain-containing-protein
MNLFVYADESGVFDKQHHSWYAFGGVLFLSKSERDSQNRKYISLERKIRRRENIDVNQELKGSNMSRQSKRTIFSSLNHCIKFGCIIQLNRCHDELFTHKKTKQRYLDYAFKIGLKRLLEKMIKEGKITPHEIENMYVFFDEHSTATDGKYELSEGLLQEFKYGTFNSDWQRYFPPLFPEMKSLQLSFCNSESQALIRAADIVANRIHYEVTVGRGTVPPIQSLHLTYLP
>NZ_CP011391.1|WP_145907631.1|1825735_1827412_+|hypothetical-protein
MNHMKKKRRIFILALLSLSVILIAAGILARQVYPTMYIAPAGNSLSVQVPSMENGEIREDTVTLVRGTAVKLRKRGTDTSMVEYEGKTLEVPSSSLSETYAGCVQVPSVFVRTRTELRKEKNGPLCQVAAEKGEELKVVSASVQDLDSETGMVNWYEVVRGDETYWIPGQYVEPDEESVHAWDEPNVAVSDYWNAAYGEGYSTDAFVAQEDWKPAQKVDFADNPRKDDVRGLHVTLEQLAANPDYYLSLKDRTDLNALVVELKNEGGPVEYESPAAAKWLDTGYQGLSLEQLRELVRQFQDAGYYMIGRISAFKDPVFATAYPEEAIQTTDGQLLEIAQSTWASPYSRKAWEYNADLCEEAAGLFNEVQLDYTRFPEGLATMQGEVELHNTYDESKASAIQHFTQYVRDRVHEHDAYLSVDVFAQVLTAMDDQDLGQYVPGLCIAADYVSPMPYPDHFVNGSLGVENPAMEQGEMLKRYSQIAQSVYADDDQYRPWLQGYSNTAQDVQDQIRAVEETGFKSWLIWCSNGDTEIVEPRVKGMKTVTGKQPEDKTADKTE
>NZ_CP011391.1|WP_067558457.1|1825189_1825699_+|hypothetical-protein
MGPILYLDIDGVLARRQPLPPFELDKALPARLAEDLNCGAIRRLDPVLVNEVVHGFDARACQLIRQICEECSAGIIITSSWRHVFSPQELKAILSIVGLGDYVLGSVPGGISRPEVIHASLEELGTADFAVVDDMDMRHDFGVRSVVPEAVFDEVCARKVRRLFKIYGH
>NZ_CP011391.1|WP_067558454.1|1823771_1825085_-|H(+)-transporting-ATPase
MIYRFRRFIRDLTPPRLLSLGFLAVILIGSVLLAMPVSWNPGQHVHFLDALFVSCSAVCVTGLTTVPPGDTFNLFGRTVLGVLIQIGGLGVAALSVMITLIMGRKIGLKARQVLSTAMNFTGVGGLINFLKILLRFTLIYEVTGAILCFFVFVRDYPPLEAAGYALFHSVSAFNNAGFDIFGGYDSLLHYAHNVPLNLITMALVIIGGFGFFAMWDMGHCKFRWKKYTLNTKIVIVMTVLLLVLGTALLYWTTDQTLLEASFQSVIARTAGFNTHPLSNFTEAALLIFTVLMFIGANPGGTGGGIKTTTFFAVAMKAVSSTMNGDRDEVFYRKIPNVVFTQALTVFFYGLTVITIGTILILAFEGDLSLSAVLVEVTSAFATVGSTVGITPGLCPASKIVLMICMFIGRLGPLTIATVLAFKGKSEAHFTEESIMIG
>NZ_CP011391.1|WP_067558451.1|1823054_1823729_-|TrkA-family-potassium-uptake-protein
MRRTPQDAAFAIIGLGRFGMAVADKLSEYGYTIICCDRDAEKVREARNLTPFAYVVEHMSKESLDEIGVRNCDCGIVCIGSAFDVSILTTMYLTNLGLKKVIAKANSEDQAKILRQMGAMTVQPEKDSGTRLADRLMYNDQIECFTLDGETQIHTLKVPATLVGKSVAEVDSRARYGINIIAIRHDNDIMTNFDPDYRFRAGDKLSIIGSKRDIERFEDRNSDD
>NZ_CP011391.1|WP_067558449.1|1821928_1822792_-|RNase-adapter-RapZ
MNENLVLVTGMSGAGKSSAMNALEDLGYCCIDNFPRELLPQLQELLEKEQDRYKNIALSVSAADYTSFVNYFDNIAKDLQIIFLDCSDEELLLRYRFTRRQHPMIASGQATTLEDAIEMERMSFNQILANMNNTFHLDTTKLSSQALINRVRHRFKSTDRPEFTVTFQSFGFKHGMPMDADMVLDVRFLPNPFYEPSLRNKTGNDKEVYDYVMESQDTQEYIHRTGEMLDYVLEQYDKQNKSNMIISVGCTGGQHRSVSIANWLYDRYKDKYRCFKSHRDVEGGENG
>NZ_CP011391.1|WP_067558446.1|1820981_1821932_-|YvcK-family-protein
MKKIVVLGGGTGLSSMLAGMKKIQDAQVTAIVTVADDGGSTGRIRNAYNVPAMGDIRHVLTAMAQNDNAGILQQLMNYRFEGQEDVGGHSLGNLIFLAMMDITGSFMGAIESLSRVMGVNGTILPCTLDVATLYALMADGTLVRGEKNIPTRDNAIEHVYYQQDVQPYDKALEALREADLIIYGIGSLYTSVIPNLIIPGIPEAIYENPCPKIYFCNAMTQPGETEGYTMEDHVRALEKHSFKNPADLVVLNDTEVSSHVLERYARMGSFPVHSDETAQSYEVWKRPLITLADNERIRHDPEAVRQVVQEILEELG
>NZ_CP011391.1|WP_067558443.1|1820025_1820985_-|DNA-binding-protein-WhiA
MSFTYDVKQEIAGADLDERQAKAQLAALLLVKAALHMNRNGTYLSFQVENASVAKHVWLLVKRLYTVEPRLAVLKKMRLKKNNIYRIVIEQGASRILEDLGILNDRGLHVKPNYDLIRSEKNARAFLQGCFLASGSVNSPRTSNYHLEISVTHRGLAESIQKLMERFFLSARITERKGLWVVYLKAGDKIGDFLRLIDASNALLQFEDLRISRDFYNQMSRLNNCELANEMKSLKAAHGQIEAIERIETLMAPEQIPPKIRAAMDIRKQYPEASLTELCDEIYKATGEVISKSGMKHRMTKIREMAASLSQDRRSSETK
>NZ_CP011391.1|WP_067558468.1|1831648_1832767_+|hypothetical-protein
MDDRKIYRKARNHVVWHLIFYFLLVCVFVIGTDLVLNLDFLKFAETGQHQTFILVSLIEIFLWLLLFLGLSTGQKWVRWLYWVMYLLEVASFWIPVRAMMNDWTHIFVYLTWMFCLFIKLAILMQTGLYFHQNRWARVYYDHVLEVYDDDPLDDARAVPARTIARTPAGAYVQPANPAEAAQVRQTAAVQHQSMDAIPEEKPLTWPQVSVRLGICIYGELVVFPIFVQMFQGWFSSLDMRSVFATRDMFLLCIFTAFIWTIPVFFLYYSQKGTRRVIYGVIAAEALFSAWFATRLMAYHDTGLYPDRVFILFILLDIIRYGLIGAVISPVLMGKAKRDPHHRQDMGLRLDQADLPDLEPEDDYDEDEDEYEE
>NZ_CP011391.1|WP_082743342.1|1832929_1833703_-|HAD-family-hydrolase
MTMTDKHLAGTQAAPELDVSRADTLLFDLDGTLLPMDEELFVKLYMHALSQAFADRYDPALMQKTLWESVGLMVGNDLDVTNETRLWELMESRFPGISTHKEDFDAFYRTGFDAAQPACPIREGTGAFLEELKKQGWRLILATNPIFPETAVRQRLQWAGVDPAIFADITTYENSTRCKPNPAYYTEILERNQLDPAKCIMIGNDTSEDMIARSLGMQTFLLTEHLIDRKNLGTDQWPHGDFPALMKAFGVDTEAGN
>NZ_CP011391.1|WP_067558473.1|1833867_1835445_-|Na/Pi-cotransporter-family-protein
MEIMKSILAFAGGLGMFIYGMHLLAEGLQQAAGSRARKLMAFLTGNRLAAVFTGAAVTALIQSSSAATVMVVGFVNASVMTLQQAVGVIMGANIGTTMTGWIVSMGEWSAFLKPSMIAPAFLFAGTVCLLTAKKEQLKHVAHILIGFGILFMGLDSMSGAIAPYTDEPVFADAFRLLGSNPIYGLLTGAVVTAIIQSSSASMGILQTLAMAGVVNWGAAAFIALGQNIGTCATALLSCIGTDRNARRAAVIHLLFNVIGSVVIGLCLWVFFLFNPAIAQSNVTGTELAVFHTSFNVLCTIMLFPFAGWLVKLSGQLVPAAGKTKKGAFVRLDPRMGEAPALALEAIESQIYAMSKIAQEAVKESAESPEKVLEDRQKSVEEMRQDITEALQGLNTSVMSQGEHQRSERDMMSLTDISRIMELSVQVAAIRGKADGDCESCQEGLKKLARSAARTLKLARHERVDEALEQEEAVDALEKELRQQVLDQMDAGTMKASHAVACLDCIRRYERISDHAEMLARNHEIQ
>NZ_CP011391.1|WP_067558475.1|1835724_1837311_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MEKRPVILVVMDGIGLSDKTLGNAVKMAYKPTLDMLWETCPHTELRAHGLAVGLPTDGDMGNSEVGHNAIGCGQIYSQGAKLVNENIESGELFQSKTWKELVEGAKDGHAMHFIGLLSDGNVHSHIKHLEALIKEAKAEGVKKVRVHILLDGRDVPETSALTYVDEIENFMNGLNDADFDARIASGGGRMQITMDRYEANWPMVEEGWNIHVHGKGRQFANATEAIETYRNETGVVDQDLPGFVIAENGQPVGLIEDGDSVILFNFRGDRAQEICRAFDEDEEFDKFDRGNKPDVNFAGMLQYDADLNIPKRYLTEPPKIKYTLTEQLVKEGINEYAISETQKFGHVTYFWNGNRSEKFSEDLETYVQVDSDVIPFEQRPWMKSAEITDKLIEAIESGKYQFLRTNYPNGDMVGHTGNLEATIIGVEAVDLALGRILKAVEKVNGILLVTADHGNADEMYDKPKEGEKVHKAKTSHTLNKVPFIVYGADVKLKHDDDMGLSDIAATVCQLLDVKPNENWRPSIIEEMK
>NZ_CP011391.1|WP_067558477.1|1837424_1837697_+|hypothetical-protein
MTYQYPAAVFETEDGWTAVFPDLDGLTVSAATMEGLMEACREDMQAFLFAQKAQGAPLPQASGDITAQDVIRRYSLPYASGNMEEITVEA
>NZ_CP011391.1|WP_067558480.1|1837957_1838698_-|amino-acid-ABC-transporter-ATP-binding-protein
MAEKIIDIKHLQKHFGDLQVLNDVDFNVDKGEVVTVIGSSGSGKSTLLRCINLLEIPDGGEIVFEGQDIRSLGNKVSKYRAKVSMVFQSFNLFNNMNVLDNCTIGQVKVLGRDKKTAQEKAMKHLKQVGMAEFANADSTRLSGGQKQRVAIARALAMDPEVLLFDEPTSALDPEMVGDVLDVMKDLAAQGLTMVIVTHEMQFAREVSDRVIFMDKGVIAEQGTPEEIFGNPKQERTQQFLSRYSNR
>NZ_CP011391.1|WP_067558484.1|1838707_1839427_-|amino-acid-ABC-transporter-permease
MSLDFSYAWKTLTDSWPMYWYGIKITVLLAIVGTVFGLLIGLVVGAIRGIPEDPLDTPFRRGLKKAGQAISWFYIWIFRGTPMMVQAVFFYYLLRSLLHWTPLTAGMIIISVNTGAYMSEIIRSGIQSVDRGQIEAAKSIGMTNFQTMIHVIFPQALKNTLPSIGNQLIVNIKDSCMLNAIGVTELYFQATSIAGSTMRYIEVYFVTALIYLTLTTLATLLLDWIEKRFSGVKSYKEFA
>NZ_CP011391.1|WP_067558487.1|1839430_1840267_-|transporter-substrate-binding-domain-containing-protein
MKKALIAAGVTALLLAGCGSSAESGTADSGKEKFTVGMECGYAPFNWQTSSETETSVALDQAGAGYCDGYDVMMSKAIADNLGKDVVIKKISWDGLQPALESGEIDAIIAGMTANEEREEGIDFTTPYYESEGMVMIVKKDSDQASYTDIQQFSGQPVIGQKNTNYDTVIDQIEGVDHVTPKGTYPELVVALQNGDAVGITAEMPVAEGIVAANPDLAIVKFEDGKGFDVDTTVSIGLKNNTRDTQEFKDIQAALDKITTDTRNEYMKNAVENAPAGE
>NZ_CP011391.1|WP_067560205.1|1840592_1841258_-|UDP-N-acetylglucosamine-pyrophosphorylase
MYKTKDLFSLEHSLAGEYLREFEYPWQALAGIKSYIQTLGPKLEGYREVSPQVWVHETAVIAPTAFLGAPCIIGPGTEVRHCAFIRGSALVGANCVVGNSVELKNVILFDNVQTPHYNYVGDSILGYKSHMGAGSITSNVKSDKTDVVVKSGKEKIETGLRKMGAMLGDHVEVGCNSVLNPGTVIGPNSNVYPVSCVRGVIPADSVFKDKDHVVLKKKDRD
>NZ_CP011391.1|WP_067558490.1|1841257_1841641_-|DUF2752-domain-containing-protein
MNRRLAQTAGLCIAAVLFLFFFGWLCPFQALTGLPCPGCNMTTALYWLLRGQLSRSLWYHPMLLPTMGAALLALAFRKKPGAVKGILLSWAVLMLICYVWRMITVFPDPPMEPEGGLASLLMNWRFQ

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Crispr_ID: NZ_CP011391_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011391_4

2001214-2001374

Orphan

Consensus_repeat	Method
ACCCCAAAACGGCGGGCAGGATGCCAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP011391_4

>merge|NZ_CP011391|4|2001214-2001374|CRISPRCasFinder
ACCCCAAAACGGCGGGCAGGATGCCAATATCTGCCTCGCAGACTCTCATCTGGTGGCCCAACCCCAAAGCGGCGGGCAGGATGCCAAAAACAGCACCCGGCTTCAACGGCTTTGCCACTGTTTTCCGGAGCACCACCCCAAAGCGGCGGTCGGGCTGCCAA

>NZ_CP011391|4|4|2001214-2001374|CRISPRCasFinder
ACCCCAAAACGGCGGGCAGGATGCCAA	TATCTGCCTCGCAGACTCTCATCTGGTGGCCCA
ACCCCAAAGCGGCGGGCAGGATGCCAA	AAACAGCACCCGGCTTCAACGGCTTTGCCACTGTTTTCCGGAGCACC
ACCCCAAAGCGGCGGTCGGGCTGCCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011391.1\|WP_067558808.1\|1992077_1992677_-\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
NZ_CP011391.1\|WP_067558822.1\|1999464_2000205_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP011391.1\|WP_158507781.1\|2008456_2008954_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234848
NZ_CP011391.1\|WP_067558802.1\|1985777_1988426_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350134
NZ_CP011391.1\|WP_158507782.1\|2008999_2009251_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235410
NZ_CP011391.1\|WP_067558856.1\|2009371_2010802_-\|C69-family-dipeptidase	unknown	unknown	gnl\|CDD\|335383
NZ_CP011391.1\|WP_067558810.1\|1992979_1994020_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|236591
NZ_CP011391.1\|WP_067560227.1\|1994057_1996580_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|237077
NZ_CP011391.1\|WP_067560231.1\|2001412_2003677_-\|pyruvate-formate-lyase	unknown	unknown	gnl\|CDD\|376958
NZ_CP011391.1\|WP_067558805.1\|1988909_1991555_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350134
NZ_CP011391.1\|WP_158507779.1\|2005010_2005841_+\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_CP011391.1\|WP_067558839.1\|2006818_2007793_+\|P1-family-peptidase	unknown	unknown	gnl\|CDD\|239070
NZ_CP011391.1\|WP_158507780.1\|2005842_2006682_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143596
NZ_CP011391.1\|WP_067558830.1\|2003868_2004861_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223526
NZ_CP011391.1\|WP_158507778.1\|2000206_2001118_-\|glycyl-radical-enzyme-activating-protein	unknown	unknown	gnl\|CDD\|274163
NZ_CP011391.1\|WP_158507777.1\|1997111_1998404_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225420
NZ_CP011391.1\|WP_067558800.1\|1984921_1985542_-\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
NZ_CP011391.1\|WP_067558858.1\|2011006_2012449_-\|C69-family-dipeptidase	unknown	unknown	gnl\|CDD\|335383
NZ_CP011391.1\|WP_067558819.1\|1998715_1999468_-\|N-acetylmannosamine-6-phosphate-2-epimerase	unknown	unknown	gnl\|CDD\|234907
NZ_CP011391.1\|WP_067558842.1\|2007789_2008191_+\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787

Protein	Function_ID	Function_description	E-value
NZ_CP011391.1\|WP_067558808.1\|1992077_1992677_-\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	9.35537e-99
NZ_CP011391.1\|WP_067558822.1\|1999464_2000205_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	9.92684e-61
NZ_CP011391.1\|WP_158507781.1\|2008456_2008954_-\|hypothetical-protein	gnl\|CDD\|234848	PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.	0.00424431
NZ_CP011391.1\|WP_067558802.1\|1985777_1988426_-\|hypothetical-protein	gnl\|CDD\|350134	cd18622, GH32_Inu-like, glycoside hydrolase family 32 protein such as Aspergillus ficuum endo-inulinase (Inu2). This subfamily of glycosyl hydrolase family GH32 includes endo-inulinase (inu2, EC 3.2.1.7), exo-inulinase (Inu1, EC 3.2.1.80), invertase (EC 3.2.1.26), and levan fructotransferase (LftA, EC 4.2.2.16), among others. These enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. These enzymes are predicted to display a 5-fold beta-propeller fold as found for GH43 and CH68. The breakdown of sucrose is widely used as a carbon or energy source by bacteria, fungi, and plants. Invertase is used commercially in the confectionery industry, since fructose has a sweeter taste than sucrose and a lower tendency to crystallize. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	1.54579e-101
NZ_CP011391.1\|WP_158507782.1\|2008999_2009251_+\|hypothetical-protein	gnl\|CDD\|235410	PRK05326, PRK05326, potassium/proton antiporter.	2.75612e-12
NZ_CP011391.1\|WP_067558856.1\|2009371_2010802_-\|C69-family-dipeptidase	gnl\|CDD\|335383	pfam03577, Peptidase_C69, Peptidase family C69.	0
NZ_CP011391.1\|WP_067558810.1\|1992979_1994020_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|236591	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	1.67052e-139
NZ_CP011391.1\|WP_067560227.1\|1994057_1996580_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|237077	PRK12364, PRK12364, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP011391.1\|WP_067560231.1\|2001412_2003677_-\|pyruvate-formate-lyase	gnl\|CDD\|376958	pfam02901, PFL-like, Pyruvate formate lyase-like. This family of enzymes includes pyruvate formate lyase, choline trimethylamine lyase, glycerol dehydratase, 4-hydroxyphenylacetate decarboxylase, and benzylsuccinate synthase.	7.64396e-118
NZ_CP011391.1\|WP_067558805.1\|1988909_1991555_-\|hypothetical-protein	gnl\|CDD\|350134	cd18622, GH32_Inu-like, glycoside hydrolase family 32 protein such as Aspergillus ficuum endo-inulinase (Inu2). This subfamily of glycosyl hydrolase family GH32 includes endo-inulinase (inu2, EC 3.2.1.7), exo-inulinase (Inu1, EC 3.2.1.80), invertase (EC 3.2.1.26), and levan fructotransferase (LftA, EC 4.2.2.16), among others. These enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. These enzymes are predicted to display a 5-fold beta-propeller fold as found for GH43 and CH68. The breakdown of sucrose is widely used as a carbon or energy source by bacteria, fungi, and plants. Invertase is used commercially in the confectionery industry, since fructose has a sweeter taste than sucrose and a lower tendency to crystallize. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	3.34509e-99
NZ_CP011391.1\|WP_158507779.1\|2005010_2005841_+\|HAD-IIB-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	1.40885e-43
NZ_CP011391.1\|WP_067558839.1\|2006818_2007793_+\|P1-family-peptidase	gnl\|CDD\|239070	cd02252, nylC_like, nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC. EIII is an amide hydrolase that catalyzes the degradation of highly-polymerized 6-aminohexanoate oligomers. Together with other nylon degradation enzymes, such as 6-aminohexanoate cyclic dimer hydrolase (EI) and 6-aminohexanoate dimer hydrolase (EII), EIII plays a role in the detoxification and biological removal of the synthetic by-products of nylon manufacture. EIII shows sequence similarity to L-aminopeptidase D-amidase/D-esterase (DmpA), an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. Like DmpA, EIII undergoes autocatalytic cleavage in front of a nucleophile to form a heterodimer. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine.	1.70333e-89
NZ_CP011391.1\|WP_158507780.1\|2005842_2006682_+\|hypothetical-protein	gnl\|CDD\|143596	cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10.	2.78013e-90
NZ_CP011391.1\|WP_067558830.1\|2003868_2004861_-\|SIS-domain-containing-protein	gnl\|CDD\|223526	COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane].	1.58233e-31
NZ_CP011391.1\|WP_158507778.1\|2000206_2001118_-\|glycyl-radical-enzyme-activating-protein	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	4.023e-109
NZ_CP011391.1\|WP_158507777.1\|1997111_1998404_-\|AAA-family-ATPase	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	2.47272e-62
NZ_CP011391.1\|WP_067558800.1\|1984921_1985542_-\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	7.12054e-99
NZ_CP011391.1\|WP_067558858.1\|2011006_2012449_-\|C69-family-dipeptidase	gnl\|CDD\|335383	pfam03577, Peptidase_C69, Peptidase family C69.	0
NZ_CP011391.1\|WP_067558819.1\|1998715_1999468_-\|N-acetylmannosamine-6-phosphate-2-epimerase	gnl\|CDD\|234907	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase.	8.43731e-83
NZ_CP011391.1\|WP_067558842.1\|2007789_2008191_+\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	1.70103e-05

>NZ_CP011391.1|WP_158507778.1|2000206_2001118_-|glycyl-radical-enzyme-activating-protein
MRLETEKTSVQDDLLYTITNIQRFATHDGPGIRTVVFFKGCPLHCPWCANPETWRPEPELFHDDSLCMGCGRCVTACPKGAVAVIGRKARVNRTLCDGCGSCVTACLNKAMEVTGNRMTIPEILAEIRKDDEYYQASGGGITLSGGEVFAQDPVPLLRALKDAGYHTAIETEGAYDLEKLAAALPWIDLVYHDVKHCDPHKLKKFTGADAEEITRHLRYLKDSDVRTIIRIPVIPGFNLEDLDNIRGYVKDLGFSEMQLLPFHPMGKGKWHKLDRRYPYEQTPMMDKTQLDAWREAGTEIGGH
>NZ_CP011391.1|WP_067558822.1|1999464_2000205_-|DeoR/GlpR-transcriptional-regulator
MTSAERLDRLKTLVQETEFLSVRQIMNEFGVSRSSAMRDLDELERQGVVVRQRGGAVLKNRAHHLTKTYEPATVDKADMHVSEKAEAARLAAALVQDGDCIYLDSGTTTAAMMTCLESRDVTIVTPNVYLLAQVPDGFPGRICLLGGDFDKSYLASTGPLARKILASFWFDKAFVSANGIADGKAWANDLSVAEIKQDAMKRADRTILVADSSKEDRKGMYAFADTEAFDELITEEKTEERDGTEQ
>NZ_CP011391.1|WP_067558819.1|1998715_1999468_-|N-acetylmannosamine-6-phosphate-2-epimerase
MKTQDAKKRELLDGLKDGLIVSCQVQHDDPIYTDDMVVKMAEAARWAGAKGIRTNSPEQIRAIKEAVPELPVIGLWKVWHDDTDVFITPTMEEVKAIWDAGAEIIALDCTKQTTHEGTVAWDLLEQAKKEIPEAIFFADVSNYEEAAHAVEKGADIVAPTLYGYTAETKDISEPDLREFARMCRDFGDDAYMMMEGHIYSPEDAVKCLFLGAHSVVVGSAITRPHLTAKRFTDLMGGLQDNWRNAERAKH
>NZ_CP011391.1|WP_158507777.1|1997111_1998404_-|AAA-family-ATPase
MTKIYPRESAEIEYKRSVTGSFLKTVSAFSNTGDGVILFGIDDKTRESCGLPDPEETYRQIKNKINGSIHPEPVYSLSINDEDHTVKLEVREGDSKPYYYGQTAYIRKGSSSVPMSSLLLERLILKRDRRSFDDLPAPEGSYSFSGFEEEARNRFGLEQLGTDAQKSLGLRDLNGQVTVAGALLADKNTFPGMDLVVLDNDDLYGEREKVDGISILQQLESAVAFFRRYYRREAVTGNLQREEIFLIPESAFREAVSNALVHRTWDTPSNIVIRMFPDRIEIQSPGGLPDGISEYEYLHKDLSVPRNVTLATLFLRLGLIEKLYMGVRRILRSYQGQYRQPDFDFTPNSMTVILPVLNQKPSLSLSEVEVIRQFQDMETLSRAELSTSTGFSRSKLGLILKKLVENKVLAVEGGGRSTRYRLNPNAENLK
>NZ_CP011391.1|WP_067560227.1|1994057_1996580_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MTENIHTIRKRSGHMEIFDPEKIRRAITRAFASTGESVTDAQLNDMTGWITAQLQEGSEVEQIQDLAEQALMENGFYKTAKAYILYRQTHARMREIVNRLTELAQDPTLAGLLTQVQEDFPQSEYSLDRLQIKAAELIRPDQSAKERLRFLERAAAELTSRNAPKWEDIAARILNHELEAEISGNEQALGLTSWQDKLEWLTDQGLLSATLLASYTPEELTELAAYMQPERTKLFKHPGLDLLANRYLIRTGDGRLMERVQEMFMGIAMHLAVPEQDRVHWAKKFYDIFSRLQVTMATPTMSNARKPFHQMSSCFIDTVEDSLTGIYKSIDNFARVSKHGGGMGLYMGKVRATGSDIRGFKGAAGGVIRWIRLVNDTAIAVDQLGVRAGAAAVYLDIWHRDTPEFLQLRTNNGDDRMKAHDIFPALCVPDLFWRLAGTNLDGDWYLMDPHQIATVKGWNLEDAFGPEWERRYWDCVNDPAIDKRVLSVKEMVRLIIKSLVETGTPFIFNRDTVNEANPNSHQGMIYASNLCTEIAQNMAAMHEETPEIMDIDGETVVVTKTVPGDFVVCNLASLSLGHIDVDNDEELRQVISTVMRALDNVIDLNYYALPYAKLTSQRMRPVGLGTSGYQHLLAKKHIRFESEEHLAYMDDLYERINYHALEASCDIAREKGAYRDFAGSEYDTGEYFRKRDYVSGKWQALAEKIQENGLRNGYLLAVAPTSSTSILAGTTAAVDPVLKKFFLEEKKGSMLTRVAPDLDDTTFWYYKNAHHIDQNWVVDAAAIRQRHIDQAQSVNLYVTPEYTFRKVLDLYLRAWEKGVKTIYYVRSQSLEVEECESCSA
>NZ_CP011391.1|WP_067558810.1|1992979_1994020_-|ribonucleotide-diphosphate-reductase-subunit-beta
MQLNPKALFNKDGDTDLASRQIINGNTTNLNDFNNVKYSWTSQWYRQAMNNFWIPEEINLSQDIKDYRNLTDDERTAYDKILSFLVFLDSLQTANLPNIGAYITANEVNLCLTIQAFQEAVHSQSYSYMLDTICSPEKRNEILYQWKDDEHLLHRNEFIGNLYNDFLEHRDAKQLVKTLIANYILEGIYFYSGFMFFYNLGRMGKMPGSAQEIRYINRDENTHLWLFRNIILDLKKECPELFTPEDEAEYREMLKTGAEQEMAWAAYVLGDRIAGLNLDRVQDYIRYLANLRARGLGLEAIYEGCDEIPESMAWVDTYSRANDIKTDFFEAKSTAYTKAGAIVDDL
>NZ_CP011391.1|WP_067558808.1|1992077_1992677_-|sugar-O-acetyltransferase
MTLEEQRRTMLAGKMYNDLTPELIQAREQAVFLTNEYNASFGQPQAEREAILSQLFKSVGHGVHFEPSFRCEFGLNISIGDNFYANFDCVMLDGGGIEIGNNVLLGPRVGIYTSNHAIDPAERVAGGCYAKPVKIGSSVWVGGGVQIMQGVTIGDNAVIGAGSVVTRSIPANVVAAGVPCRVIREITEADKTGYTGEVD
>NZ_CP011391.1|WP_067558805.1|1988909_1991555_-|hypothetical-protein
MKKENNTKANLIKSMAVPASAMIVLSGASAVILANDDVNPVPVIEEPAPAESVITDGPIGEPVDSSAEITVPEETETYNSQESEASAAAEEDVPTEGEQPADQQKEETPEEAEQTPAVTPEPAPVTEPDAAVNTAPTDATAPAPEATVQKTETTAAAAPAANAKAETPAVDKEQEEEAYREQYHFSNEKGWSNDPNGMVYYNGEWHLFFQYYPDGVNHGSMNWGHATSKDLVHWTEHEIPEVFKASTDHGMRFHFSGSAVVDKDNTSGFFKDGQGGLVAVWTLAGMPEGAVWGGDFGFQRQCIAYSTDGYNWVAPDLGIERVVLNSDGTTRQLNDKEKDFFKNVVLAEGSLRTVIHNADGTTTLVNEDPLTNGDFRDPKVFWHKESSQWMMAVAGGPLRFYSSKDLIHWNPEAMQDDIITECPELYYLPVEGTDEYKYVLSEGGRWYQIGDFKEVDGVWTFVPDTMNGPTGDVPLRLNMNYAPDAYAAQSFYKEDGRVVMVQWMSNWSYADNSTVRQPDGSKVTLEGIRKMLGEKHNGQFTLMADLSVVRTPEGLRLKQTPVAEYDQMKNLEVKDDIVLDDKSNPLEGIHSQQFQFEIEFAPEKGTEKVVLEVLKNKDYQTTIWYDVNTGILHVDRSKSMAAEQAPADHMQNGTWFKFLQDYTAPVAMTNGKIKLKVFVDNYSVEVYAGNDTIVLTELVFPYKDADLLNLYAVGTPVNATYSFATMDSYRKDNTDMRNLSGTLADAKDQLERGQGNYTDESFKALQDAYKAAFAAAFNPDSTQNSINLANYALTNALTNLRANADKPITVTPEKPTTVTDIYDSTAKPVVSETPAQAVSAASVSSEGTPTAAATGFGMTLATAIGALAGAVFTNRKRREQE
>NZ_CP011391.1|WP_067558802.1|1985777_1988426_-|hypothetical-protein
MKKENNTKANLIKSMAVPASAMMVLSGASAVILANDDVNLAPVIEEPAPVESVIPDGPIGEPVESSAEITVSEETETYNSQESEAPAAAEEEVPAEDGQSEDQQKEETPEEAEQTPAATPEPAPVTEPDAAVNTVPTDAAAPAPEATVQKTETTAAAAPAANAKAETPAVDKEQEEEAYREQYHFSNEKGWSNDPNGMVYYNGEWHLFFQYYPDGVNHGPMSWGHAVSKDLVHWAELDIPDTFNAALFPSEDGTRRHFSGSAVYDKDNTSGFFKDGQGGLVAVWTVAGRPAGMSGGGSQRQAIAYSTDGIHWVEPDLGYDRVYVDRDGNIHELTEKQKDYYKNVVLSEYNVPLAVRDAEGNIIGTTSQDPLNNSAFRDPKVFWHEDSKQWIMAVAGGPLRFYSSPDLKTWTAQAMQDDIITECPELYYLPVEGTDEYKYVLSEGGRWYQIGDFKEVDGVWTFVPDTMNGPTGDVPLRLNMNYAPDAYAAQSFYKEDGRVVMVQWMSNWSYADNSTVRQPDGSKVTLEGIRKMLGEKHNGQFTLMADLSVVRTPEGLRLKQTPVAEYDQMKNLEVKDDIVLDDKSNPLEGIHSQQFQFEIEFAPEKGTEKVVLEVLKNKDYQTTIWYDVNTGILHVDRSKSMAAEQAPADHMQNGTWFKFLQDYTAPVAMTNGKIKLKVFVDNYSVEVYAGNDTIVLTELVFPYKDADLLNLYAVGTPVNATYSFATMDSYRKDNTDMRNLSGTLADAKDQLERGQGNYTDESFKALQDAYKAAFAAAFNPDSTQNSINLANYALTNALTNLRANADKPITVTPEKPTTVTDIYDSTAKPVVSETPAQAVSAASVSSEGTPTAAATGFGMTLATAIGALAGAVFTNRKRREQE
>NZ_CP011391.1|WP_067558800.1|1984921_1985542_-|sugar-O-acetyltransferase
MTLEEQRRTMLAGKMYNDLTPELIQAREQAVFLTNEYNASFGQPQAEREAILSQLFKSVGHGAYFEPSFRCEFGFNISIGDNFYANFDCVMLDGGGIEIGNNVLLGPRVGIYTSNHAIDPAERVAGGCYAKPVKIGNNVWVGGGVNINQGVTIGDNTVIGSGSVVTRSIPANVVAAGVPCRVIREITETDRTGFRPDADCHGSQGD
>NZ_CP011391.1|WP_067560231.1|2001412_2003677_-|pyruvate-formate-lyase
MKHINIDGAQNVEVSRKLPSEKTPARQLDMMERYTEVYRSHLNDDKSLREVKCLEVIYPGLFRHLQKGDLIAGRLDFLPIGFGCVTSVGGVGHYCVFHKLRGLKDQLPESDWPRIDALYDFWQDHDLKTLYCQDVLDETTTGRFIDCAYPYMATARLSGMMLDYTKLMRLGVPGLKREIAERLAADQGNGYLQASLEMMDLFVKVIRAQKDLVADSGDVPMEAKQRMIGDLTAIEDNPPQTFRQALQLFWLYALCAGCINYGRLDIVLGPFLKADIEAGIETEDSAQAVLESLWMLIENRRTTVNGRIIVGGRGRPDPEAADLFAKICLRVVKKLRCVEPQFTFRFDAETDPALKDMAYECIAAGATYPTLYNDDVNIPAVQYAMRVDRKTAEQYLPFGCGEFVIQGQSLGTPNTLLNMVKVLQIAMNEGVDPMDGKQKNGPVQLKPLVDLTTFEAFYDQYKKMLDWYFEKCARDQLYSYEVMNREVSFLFASALMDDCLARGKALLDGGVKILGGTLETYGNINASDALTAIRRLVFEEKKYTLEEMNAAANRDFQGDAVMLRDILAVPKYGNDEQEADDMADDLYEFTAKSVRQKGIDLGMDYFLIVISNNQTNTDWGLQTAASLDGRRRGVYMNPANNPQGGAATSGPTAVLNSLSRFDAKYHGGSVQNIKFTPRMMHEDKEKVKILFDTYFRKGGCQLMVTVVDKGQLEDAQKHPEKYPDLIVRVAGYSAVFVDLDKTVQDELLSRALWD
>NZ_CP011391.1|WP_067558830.1|2003868_2004861_-|SIS-domain-containing-protein
MSTAPSMHDYILRQPEILSSVYDRKESWLTILQSMLETHPMEEIVLLGSGTSHHVSTAAAALAERHLPMQARAVLPAQFIGSRILHPSRTLAVGISQSGNSLSTLNAIRYAKEQGCPVLAFSLEEDSALVRECDAWMPLVCERELVPPETQGYTAAILEWILAIRQAAGLDTDVTKELSALPKVVAESEAFVRAHLHDILRAPKITVTGSGLHWATAMEGALKMRETLRHAVMREETEELSHLADLAFEDDDLLMAIVQTDRDRQTVNLVRQITDHVLEIEAGEDDFSLITAVIPFQLAGAIGAAGLGNDTSKYPYEIENISHGEGFLFR
>NZ_CP011391.1|WP_158507779.1|2005010_2005841_+|HAD-IIB-family-hydrolase
MTMKTETKQTAYPSVDAIFLDVDGTLYDHAAGCIPPRHLEAMKILQEGGTKVCLCSGRCMPLLENLGILDQFPFDGIVAGNGSYVYAQNGTLIFDDPVDPEAVKQIYALAAAQSIPVFAAGNHVLVTAMTPAVEDLFAKISVKDIPVRHPRPDDTFAVLSLVEEHRKPHPEFAVSGVKILENELSMDMMKDGLSKYEGIRTLLDHYGLKSYMAFGDALNDLEMLQHANVGVAMGNAQPELLEVIPETCPPVTEAGIYQWLQDHGYLDTAVAAADGQ
>NZ_CP011391.1|WP_158507780.1|2005842_2006682_+|hypothetical-protein
MQGSLKLQLIEPETTGDVQENIRRMQNAVNEKAQFVLLPELWNCPYDNAEIRKAAGFGEACRQAMAEAARKNTVWLAGSIPWQDPADGRIYNMAFVFDADGAEVCRYAKTHLMEVHTPHSHYSEAEVFTPGDRFETFETPWGKMGILVCYDIRFPEPARILGDAGIRLLLLPAAFNEAVGRKHWHSLLCARAIENQIFVAGCNPDYAWGKYKAWGHSLVVSPDGVILQEGSGMVTLDLSETDRIRQRMPYRKIRRRDLYDRTGCTVSSTGTVRPDRRTG
>NZ_CP011391.1|WP_067558839.1|2006818_2007793_+|P1-family-peptidase
MKSIPITDISGFQIGYADNAALGTGCTAILCRAGAVAGCDVRGGGPATRDTDLLAPKNTVEAIHGVLLSGGSAFGLEAGTGVMKYLSEQGIGMPVTPGVSVPIVVQADIFDLAVGDPAWPDVAMGYAAAKDSEHNVIRHGNAGAGMGASVGKILGPEKAMKSGIGTAAFECGPLKVGAVVVVNACGDVFAMDSDTRLAGVQSDQSMEEIMGMLYETEASRAMEQAQDAEASRKNTTIGCVLTNGQFTKAQMNKLASLAQNGLSRTIRPVNMTLDGDTLFAMTTGEVPAPLDVAGMMAVKAVAKAVETAVNEAETAYGLKGRKSQ
>NZ_CP011391.1|WP_067558842.1|2007789_2008191_+|SseB-family-protein
MNAIEEKLNALKEVYVPGLDARKKDTFPALDPVNFVYKVDVPLLPDLLKAEDGRSFYPCFTSMAQVPEQYKHFFLWVAVPFREFCAFAVKSTICHEIIIDPFTSSLILPENMVVHYSGLEAPASDEAEPKTEA
>NZ_CP011391.1|WP_158507781.1|2008456_2008954_-|hypothetical-protein
MQTLRTQYSVDAFCHEKDEASQNLVSNLICNLAACDILLYLFSSFALFGSIEVVLAREITMNTVAAVEALVRRTVRQPGLPLKHMNHPGGARQMVHRLQKRGLIPEETRQQFDRLYDLRNRIHLRHANELRAGRFSKKMAVTMPAGFDSFHRIMLQALEKGHSGR
>NZ_CP011391.1|WP_158507782.1|2008999_2009251_+|hypothetical-protein
MTDLSGNVLKTFSDYSEDPDLQFSLVELMPGSSWHGKSLAELRLPSGMATALILRRKEKLIPHGETILQAQSTLVFVDSGSLR
>NZ_CP011391.1|WP_067558856.1|2009371_2010802_-|C69-family-dipeptidase
MPCTTLLVGKLASADGSTLIARNSDSGAGSYTPKKFVAVLPQDQPRSYTSVISKVTIELPDDPMPYACVPNAMKDEGEWASAGINAANVAMTATETITSNPRVQGADPLVKGGIGEEDLVTIVLPYVRTAKEGCLRLGSLLEQYGTYEMNGIGFCDGKDVWWLETIGGHHWMARRLPDDAYSVIPNQLGLDFFDFSDPENFIGSADLETFVKDNSLDLRMDPEEPFNPRDAFGSHDDSDHTYNTPRAWWALKQLNPNSFAWTGPEADFTPDSNDLPWCLVPEKKITVEDVKYILSGHYQGTPFDPYLHHGDTSMAGAFRTIGINRTDYLGCCQVKTDAPSILWLAYASNPFNVMVPFYTDITDTPAYVRDTTEAVSTDSFYWTSRMIAAMADACDRESAIFIERYQNTVGGRCRRILNEYTPQIQSAADEGKAVQLCMEVNDKVAAVTKDEAEKCLGEVLKALSNSMKNAFSRSDA
>NZ_CP011391.1|WP_067558858.1|2011006_2012449_-|C69-family-dipeptidase
MPCTTILVGKDATYDGSTLMARNDDSGAGKFTVKKYVLITPEQQPRHYESVTSHIQLELPDNPMSYTCCPNVEPGTGYKSEAGINSANVAMSATETITSNPRVLGADPLVPGGLGEEDFITVILPYIKSARDGVLYTGRLLEKYGTYEMSGIGYSDADEIWYLETIGGHHWMARRVPDNAYAVIPNQLGIDYFDFEDAAGEQKNCLCSAGLEDFVKNNHLDLSMDPGDAFDPRAAFGSHADSDHTYNTPRAWWMERYFNPNTFVWDGPDADFRPDSDDIPWSLVPEKKITVEDIKYVLAGHYQGTPYDPYMHHGDKSMAGAFRTIGINRTAFLGVLQMKHNGTSVEWLSFAANEFNALIPFYQHITATPAYVGDTTMDVNTNSFYWTSRLIAAMADAVDRETASIIERYQNRTMNEAHAILDACDPKIAAAADEETRVKLCMEANQKLADMAEAASQEALSQVLYTLSNNMKNAFSRSDA

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Crispr_ID: NZ_CP011391_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011391_5

2168106-2170635

TypeI-E

Consensus_repeat	Method
GGATCACCCCCGCGGGTGCGGGGACATG	CRISPRCasFinder
GGATCACCCCCGCGGGTGCGGGGACATG	CRT
GGATCACCCCCGCGGGTGCGGGGACATG	PILER-CR

41 spacers

RT,DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP011391_5

>merge|NZ_CP011391|5|2168106-2170635|CRISPRCasFinder,CRT,PILER-CR
AAAAAAGCCCCGCACGTGCGGGGACAAGTTTGGAATCAGTGGAGAACGCGATGTTGTCGAGGGATCACCCCCGCAGGTGCGGGGACAAGTGATGATTTCGAAGTTCTGGTTGCTCTCGTGGAAAAATCACGCCCGCGGATGCGGGGACAAGTGTTATCAACGATGGAAAGATTCTGGACCCGAAGGATCACCCCCGCGGATGCGGGGACAAGCGACTACTGCATGGATAAATACGGCTGGATAGAGGATCACCCCCGCGGATGCGGGGACAAGGCTGTAGCAGTGGTGCTGCCTCGGCCTTGGTTAGGATCACCCCCGCGGGTGCGGGGACATGGATGATTCCAATTCCTCCTGCTTTCTGGATTTGGGATCACCCCCGCGGGTGCGGGGACATGAAGTCGATGAACGCCGTCAGCGCCGGGATCACGGGATCACCCCCGCGGGTGCGGGGACATGAAGCCGTGCGCACTGTTTGATGTTCCGGGACAGGGATCACCCCCGCGGGTGCGGGGACATGTTGACAAGATTGTGTGCAGGGCGTTGACCTTGAGGATCACCCCCGCGGGTGCGGGGACATGTCTTCCCTGAGTGCAGTAAGCGTCGTTTCAAAGGGATCACCCCCGCGGGTGCGGGGACATGCATGTAGGGGTTTTCGCCATGCCGCTGCTCCCAGGATCACCCCCGCGGGTGCGGGGACATGTTGACCTCAGGATTGCCCATCAGTCTGGACGAAGGATCACCCCCGCGGGTGCGGGGACATGTTTCTGGCTGCTCCGGTCATTGTGCAGGGCATAGGATCACCCCCGCGGGTGCGGGGACATGGTCTCTCCGATTAAGCACAAAAAAATCCCCCAGGGATCACCCCCGCGGGTGCGGGGACATGCGCTTCATCAGCCAGTTCGACTCCATCTTTGAGGGATCACCCCCGCGGGTGCGGGGACATGAGGGATACATTTTCAATCAGTCCTCTGACCGCAGGATCACCCCCGCGGGTGCGGGGACATGTCTCGATTTCGGTGTCCCGAGGGACAAAAGAGGGGATCACCCCCGCGGGTGCGGGGACATGCACATAGTCCAGCGTCTTCTTGAGCATGGCGTGGGATCACCCCCGCGGGTGCGGGGACATGGCGACGCGGCCGCTTCGCTTCCTGTTCTGATAAGGATCACCCCCGCGGGTGCGGGGACATGCAGGCAGACTACCGCGGATTGATTGCGTACGGAGGATCACCCCCGCGGGTGCGGGGACATGCCAAATACTGGCGTCCCGCTTCCTGTTTCGTCAGGATCACCCCCGCGGGTGCGGGGACATGGCTCATCCGGTGAGTGGCCGATGCGGGCTTTGAGGATCACCCCCGCGGGTGCGGGGACATGGATACCCAGGCACTGCGCAATGATGCTGCCTTCGGATCACCCCCGCGGGTGCGGGGACATGCCAGACATGCGCTTGACTTCGATTCAGTAAGTAGGATCACCCCCGCGGGTGCGGGGACATGCCCCCAACGAAGGCCGGCAGACCTCCGAGGGTAGGATCACCCCCGCGGGTGCGGGGACATGGCAAACATTCACAAGCAGCGATTAAAACGCTGCGGATCACCCCCGCGGGTGCGGGGACATGCCCAGAAGACGCGGGGACCTGAGCCTGATGGCCGGATCACCCCCGCGGGTGCGGGGACATGGCATACATTACAATGCGTCCGGACTTGCAGAAGGGATCACCCCCGCGGGTGCGGGGACATGCTTCTGGTGGCGTCCCCTTCATTGCGGTTCCCCGGATCACCCCCGCGGGTGCGGGGACATGTTGGCAACAGCCTGCAAACTTGCAAAACAGAGCGGATCACCCCCGCGGGTGCGGGGACATGCAACCAACCCCTGTCCCATGCACGGATCTGCGAGGATCACCCCCGCGGGTGCGGGGACATGGTATTTATGTGTACATAAACCCCTTGCTTGCTAGGATCACCCCCGCGGGTGCGGGGACATGTCCTGGCTACCGCGGCAAGCGTCGCAACCGCTGGGATCACCCCCGCGGGTGCGGGGACATGGCTCATGTGGCTTATGCGGTGCCTCAAGCTGGAGGATCACCCCCGCGGGTGCGGGGACATGTTTCCTTGTCTGGTTCCAGTTCTGGATAGCGGAGGATCACCCCCGCGGGTGCGGGGACATGTATATCGAAATCGGGAAAGAGTACCTGGCTGAAGGATCACCCCCGCGGGTGCGGGGACATGACAACGTGAGATAGCAGCCAGGTCCGGCATTACGGATCACCCCCGCGGGTGCGGGGACATGGCGACACGATCAAAGACGACGAACGGAAAAGGAGGATCACCCCCGCGGGTGCGGGGACATGTAGCCTTTTGCCCGGCACTTGTGAGTGCCGATGGGATCACCCCCGCGGGTGCGGGGACATGTTAATACGCCCAATTCACGCTCAATGCAGTAAAGGATCACCCCCGCGGGTGCGGGGACATGGCAACCGCTTCCGGATAGTCGTATGCCTGAATGGGATCACCCCCGCGGGTGCGGGGACATG

>NZ_CP011391|5|5|2168106-2170635|CRISPRCasFinder
AAAAAAGCCCCGCACGTGCGGGGACAAG	TTTGGAATCAGTGGAGAACGCGATGTTGTCGAG
GGATCACCCCCGCAGGTGCGGGGACAAG	TGATGATTTCGAAGTTCTGGTTGCTCTCGTGGAA
AAATCACGCCCGCGGATGCGGGGACAAG	TGTTATCAACGATGGAAAGATTCTGGACCCGAA
GGATCACCCCCGCGGATGCGGGGACAAG	CGACTACTGCATGGATAAATACGGCTGGATAGA
GGATCACCCCCGCGGATGCGGGGACAAG	GCTGTAGCAGTGGTGCTGCCTCGGCCTTGGTTA
GGATCACCCCCGCGGGTGCGGGGACATG	GATGATTCCAATTCCTCCTGCTTTCTGGATTTG
GGATCACCCCCGCGGGTGCGGGGACATG	AAGTCGATGAACGCCGTCAGCGCCGGGATCACG
GGATCACCCCCGCGGGTGCGGGGACATG	AAGCCGTGCGCACTGTTTGATGTTCCGGGACAG
GGATCACCCCCGCGGGTGCGGGGACATG	TTGACAAGATTGTGTGCAGGGCGTTGACCTTGA
GGATCACCCCCGCGGGTGCGGGGACATG	TCTTCCCTGAGTGCAGTAAGCGTCGTTTCAAAG
GGATCACCCCCGCGGGTGCGGGGACATG	CATGTAGGGGTTTTCGCCATGCCGCTGCTCCCA
GGATCACCCCCGCGGGTGCGGGGACATG	TTGACCTCAGGATTGCCCATCAGTCTGGACGAA
GGATCACCCCCGCGGGTGCGGGGACATG	TTTCTGGCTGCTCCGGTCATTGTGCAGGGCATA
GGATCACCCCCGCGGGTGCGGGGACATG	GTCTCTCCGATTAAGCACAAAAAAATCCCCCAG
GGATCACCCCCGCGGGTGCGGGGACATG	CGCTTCATCAGCCAGTTCGACTCCATCTTTGAG
GGATCACCCCCGCGGGTGCGGGGACATG	AGGGATACATTTTCAATCAGTCCTCTGACCGCA
GGATCACCCCCGCGGGTGCGGGGACATG	TCTCGATTTCGGTGTCCCGAGGGACAAAAGAGG
GGATCACCCCCGCGGGTGCGGGGACATG	CACATAGTCCAGCGTCTTCTTGAGCATGGCGTG
GGATCACCCCCGCGGGTGCGGGGACATG	GCGACGCGGCCGCTTCGCTTCCTGTTCTGATAA
GGATCACCCCCGCGGGTGCGGGGACATG	CAGGCAGACTACCGCGGATTGATTGCGTACGGA
GGATCACCCCCGCGGGTGCGGGGACATG	CCAAATACTGGCGTCCCGCTTCCTGTTTCGTCA
GGATCACCCCCGCGGGTGCGGGGACATG	GCTCATCCGGTGAGTGGCCGATGCGGGCTTTGA
GGATCACCCCCGCGGGTGCGGGGACATG	GATACCCAGGCACTGCGCAATGATGCTGCCTTC
GGATCACCCCCGCGGGTGCGGGGACATG	CCAGACATGCGCTTGACTTCGATTCAGTAAGTA
GGATCACCCCCGCGGGTGCGGGGACATG	CCCCCAACGAAGGCCGGCAGACCTCCGAGGGTA
GGATCACCCCCGCGGGTGCGGGGACATG	GCAAACATTCACAAGCAGCGATTAAAACGCTGC
GGATCACCCCCGCGGGTGCGGGGACATG	CCCAGAAGACGCGGGGACCTGAGCCTGATGGCC
GGATCACCCCCGCGGGTGCGGGGACATG	GCATACATTACAATGCGTCCGGACTTGCAGAAG
GGATCACCCCCGCGGGTGCGGGGACATG	CTTCTGGTGGCGTCCCCTTCATTGCGGTTCCCC
GGATCACCCCCGCGGGTGCGGGGACATG	TTGGCAACAGCCTGCAAACTTGCAAAACAGAGC
GGATCACCCCCGCGGGTGCGGGGACATG	CAACCAACCCCTGTCCCATGCACGGATCTGCGA
GGATCACCCCCGCGGGTGCGGGGACATG	GTATTTATGTGTACATAAACCCCTTGCTTGCTA
GGATCACCCCCGCGGGTGCGGGGACATG	TCCTGGCTACCGCGGCAAGCGTCGCAACCGCTG
GGATCACCCCCGCGGGTGCGGGGACATG	GCTCATGTGGCTTATGCGGTGCCTCAAGCTGGA
GGATCACCCCCGCGGGTGCGGGGACATG	TTTCCTTGTCTGGTTCCAGTTCTGGATAGCGGA
GGATCACCCCCGCGGGTGCGGGGACATG	TATATCGAAATCGGGAAAGAGTACCTGGCTGAA
GGATCACCCCCGCGGGTGCGGGGACATG	ACAACGTGAGATAGCAGCCAGGTCCGGCATTAC
GGATCACCCCCGCGGGTGCGGGGACATG	GCGACACGATCAAAGACGACGAACGGAAAAGGA
GGATCACCCCCGCGGGTGCGGGGACATG	TAGCCTTTTGCCCGGCACTTGTGAGTGCCGATG
GGATCACCCCCGCGGGTGCGGGGACATG	TTAATACGCCCAATTCACGCTCAATGCAGTAAA
GGATCACCCCCGCGGGTGCGGGGACATG	GCAACCGCTTCCGGATAGTCGTATGCCTGAATG
GGATCACCCCCGCGGGTGCGGGGACATG

>NZ_CP011391|5|3|2168106-2170635|CRT
AAAAAAGCCCCGCACGTGCGGGGACAAG	TTTGGAATCAGTGGAGAACGCGATGTTGTCGAG
GGATCACCCCCGCAGGTGCGGGGACAAG	TGATGATTTCGAAGTTCTGGTTGCTCTCGTGGAA
AAATCACGCCCGCGGATGCGGGGACAAG	TGTTATCAACGATGGAAAGATTCTGGACCCGAA
GGATCACCCCCGCGGATGCGGGGACAAG	CGACTACTGCATGGATAAATACGGCTGGATAGA
GGATCACCCCCGCGGATGCGGGGACAAG	GCTGTAGCAGTGGTGCTGCCTCGGCCTTGGTTA
GGATCACCCCCGCGGGTGCGGGGACATG	GATGATTCCAATTCCTCCTGCTTTCTGGATTTG
GGATCACCCCCGCGGGTGCGGGGACATG	AAGTCGATGAACGCCGTCAGCGCCGGGATCACG
GGATCACCCCCGCGGGTGCGGGGACATG	AAGCCGTGCGCACTGTTTGATGTTCCGGGACAG
GGATCACCCCCGCGGGTGCGGGGACATG	TTGACAAGATTGTGTGCAGGGCGTTGACCTTGA
GGATCACCCCCGCGGGTGCGGGGACATG	TCTTCCCTGAGTGCAGTAAGCGTCGTTTCAAAG
GGATCACCCCCGCGGGTGCGGGGACATG	CATGTAGGGGTTTTCGCCATGCCGCTGCTCCCA
GGATCACCCCCGCGGGTGCGGGGACATG	TTGACCTCAGGATTGCCCATCAGTCTGGACGAA
GGATCACCCCCGCGGGTGCGGGGACATG	TTTCTGGCTGCTCCGGTCATTGTGCAGGGCATA
GGATCACCCCCGCGGGTGCGGGGACATG	GTCTCTCCGATTAAGCACAAAAAAATCCCCCAG
GGATCACCCCCGCGGGTGCGGGGACATG	CGCTTCATCAGCCAGTTCGACTCCATCTTTGAG
GGATCACCCCCGCGGGTGCGGGGACATG	AGGGATACATTTTCAATCAGTCCTCTGACCGCA
GGATCACCCCCGCGGGTGCGGGGACATG	TCTCGATTTCGGTGTCCCGAGGGACAAAAGAGG
GGATCACCCCCGCGGGTGCGGGGACATG	CACATAGTCCAGCGTCTTCTTGAGCATGGCGTG
GGATCACCCCCGCGGGTGCGGGGACATG	GCGACGCGGCCGCTTCGCTTCCTGTTCTGATAA
GGATCACCCCCGCGGGTGCGGGGACATG	CAGGCAGACTACCGCGGATTGATTGCGTACGGA
GGATCACCCCCGCGGGTGCGGGGACATG	CCAAATACTGGCGTCCCGCTTCCTGTTTCGTCA
GGATCACCCCCGCGGGTGCGGGGACATG	GCTCATCCGGTGAGTGGCCGATGCGGGCTTTGA
GGATCACCCCCGCGGGTGCGGGGACATG	GATACCCAGGCACTGCGCAATGATGCTGCCTTC
GGATCACCCCCGCGGGTGCGGGGACATG	CCAGACATGCGCTTGACTTCGATTCAGTAAGTA
GGATCACCCCCGCGGGTGCGGGGACATG	CCCCCAACGAAGGCCGGCAGACCTCCGAGGGTA
GGATCACCCCCGCGGGTGCGGGGACATG	GCAAACATTCACAAGCAGCGATTAAAACGCTGC
GGATCACCCCCGCGGGTGCGGGGACATG	CCCAGAAGACGCGGGGACCTGAGCCTGATGGCC
GGATCACCCCCGCGGGTGCGGGGACATG	GCATACATTACAATGCGTCCGGACTTGCAGAAG
GGATCACCCCCGCGGGTGCGGGGACATG	CTTCTGGTGGCGTCCCCTTCATTGCGGTTCCCC
GGATCACCCCCGCGGGTGCGGGGACATG	TTGGCAACAGCCTGCAAACTTGCAAAACAGAGC
GGATCACCCCCGCGGGTGCGGGGACATG	CAACCAACCCCTGTCCCATGCACGGATCTGCGA
GGATCACCCCCGCGGGTGCGGGGACATG	GTATTTATGTGTACATAAACCCCTTGCTTGCTA
GGATCACCCCCGCGGGTGCGGGGACATG	TCCTGGCTACCGCGGCAAGCGTCGCAACCGCTG
GGATCACCCCCGCGGGTGCGGGGACATG	GCTCATGTGGCTTATGCGGTGCCTCAAGCTGGA
GGATCACCCCCGCGGGTGCGGGGACATG	TTTCCTTGTCTGGTTCCAGTTCTGGATAGCGGA
GGATCACCCCCGCGGGTGCGGGGACATG	TATATCGAAATCGGGAAAGAGTACCTGGCTGAA
GGATCACCCCCGCGGGTGCGGGGACATG	ACAACGTGAGATAGCAGCCAGGTCCGGCATTAC
GGATCACCCCCGCGGGTGCGGGGACATG	GCGACACGATCAAAGACGACGAACGGAAAAGGA
GGATCACCCCCGCGGGTGCGGGGACATG	TAGCCTTTTGCCCGGCACTTGTGAGTGCCGATG
GGATCACCCCCGCGGGTGCGGGGACATG	TTAATACGCCCAATTCACGCTCAATGCAGTAAA
GGATCACCCCCGCGGGTGCGGGGACATG	GCAACCGCTTCCGGATAGTCGTATGCCTGAATG
GGATCACCCCCGCGGGTGCGGGGACATG

>NZ_CP011391|5|2|2168839-2170635|PILER-CR
GGATCACCCCCGCGGGTGCGGGGACATG	TTTCTGGCTGCTCCGGTCATTGTGCAGGGCATA
GGATCACCCCCGCGGGTGCGGGGACATG	GTCTCTCCGATTAAGCACAAAAAAATCCCCCAG
GGATCACCCCCGCGGGTGCGGGGACATG	CGCTTCATCAGCCAGTTCGACTCCATCTTTGAG
GGATCACCCCCGCGGGTGCGGGGACATG	AGGGATACATTTTCAATCAGTCCTCTGACCGCA
GGATCACCCCCGCGGGTGCGGGGACATG	TCTCGATTTCGGTGTCCCGAGGGACAAAAGAGG
GGATCACCCCCGCGGGTGCGGGGACATG	CACATAGTCCAGCGTCTTCTTGAGCATGGCGTG
GGATCACCCCCGCGGGTGCGGGGACATG	GCGACGCGGCCGCTTCGCTTCCTGTTCTGATAA
GGATCACCCCCGCGGGTGCGGGGACATG	CAGGCAGACTACCGCGGATTGATTGCGTACGGA
GGATCACCCCCGCGGGTGCGGGGACATG	CCAAATACTGGCGTCCCGCTTCCTGTTTCGTCA
GGATCACCCCCGCGGGTGCGGGGACATG	GCTCATCCGGTGAGTGGCCGATGCGGGCTTTGA
GGATCACCCCCGCGGGTGCGGGGACATG	GATACCCAGGCACTGCGCAATGATGCTGCCTTC
GGATCACCCCCGCGGGTGCGGGGACATG	CCAGACATGCGCTTGACTTCGATTCAGTAAGTA
GGATCACCCCCGCGGGTGCGGGGACATG	CCCCCAACGAAGGCCGGCAGACCTCCGAGGGTA
GGATCACCCCCGCGGGTGCGGGGACATG	GCAAACATTCACAAGCAGCGATTAAAACGCTGC
GGATCACCCCCGCGGGTGCGGGGACATG	CCCAGAAGACGCGGGGACCTGAGCCTGATGGCC
GGATCACCCCCGCGGGTGCGGGGACATG	GCATACATTACAATGCGTCCGGACTTGCAGAAG
GGATCACCCCCGCGGGTGCGGGGACATG	CTTCTGGTGGCGTCCCCTTCATTGCGGTTCCCC
GGATCACCCCCGCGGGTGCGGGGACATG	TTGGCAACAGCCTGCAAACTTGCAAAACAGAGC
GGATCACCCCCGCGGGTGCGGGGACATG	CAACCAACCCCTGTCCCATGCACGGATCTGCGA
GGATCACCCCCGCGGGTGCGGGGACATG	GTATTTATGTGTACATAAACCCCTTGCTTGCTA
GGATCACCCCCGCGGGTGCGGGGACATG	TCCTGGCTACCGCGGCAAGCGTCGCAACCGCTG
GGATCACCCCCGCGGGTGCGGGGACATG	GCTCATGTGGCTTATGCGGTGCCTCAAGCTGGA
GGATCACCCCCGCGGGTGCGGGGACATG	TTTCCTTGTCTGGTTCCAGTTCTGGATAGCGGA
GGATCACCCCCGCGGGTGCGGGGACATG	TATATCGAAATCGGGAAAGAGTACCTGGCTGAA
GGATCACCCCCGCGGGTGCGGGGACATG	ACAACGTGAGATAGCAGCCAGGTCCGGCATTAC
GGATCACCCCCGCGGGTGCGGGGACATG	GCGACACGATCAAAGACGACGAACGGAAAAGGA
GGATCACCCCCGCGGGTGCGGGGACATG	TAGCCTTTTGCCCGGCACTTGTGAGTGCCGATG
GGATCACCCCCGCGGGTGCGGGGACATG	TTAATACGCCCAATTCACGCTCAATGCAGTAAA
GGATCACCCCCGCGGGTGCGGGGACATG	GCAACCGCTTCCGGATAGTCGTATGCCTGAATG
GGATCACCCCCGCGGGTGCGGGGACATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011391.1\|WP_145907782.1\|2164231_2164903_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP011391.1\|WP_067559295.1\|2175519_2177169_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP011391.1\|WP_067559306.1\|2181580_2183344_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP011391.1\|WP_158507789.1\|2172512_2173229_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP011391.1\|WP_145907669.1\|2164948_2165551_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011391.1\|WP_067559279.1\|2170649_2171552_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NZ_CP011391.1\|WP_067555742.1\|2166368_2167790_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP011391.1\|WP_067553967.1\|2157468_2158818_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP011391.1\|WP_145907679.1\|2180767_2181130_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341491
NZ_CP011391.1\|WP_067559267.1\|2162441_2163083_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377442
NZ_CP011391.1\|WP_067559286.1\|2173134_2173845_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP011391.1\|WP_067559289.1\|2173844_2174918_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP011391.1\|WP_067559260.1\|2155613_2157284_-\|biosynthetic-type-acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|272915
NZ_CP011391.1\|WP_067559262.1\|2159432_2160866_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223362
NZ_CP011391.1\|WP_082743384.1\|2177460_2180223_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP011391.1\|WP_067559292.1\|2174920_2175523_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP011391.1\|WP_145907673.1\|2165579_2166251_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011391.1\|WP_067559281.1\|2171551_2172520_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP011391.1\|WP_145907666.1\|2160865_2162449_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215012
NZ_CP011391.1\|WP_067559270.1\|2163063_2164191_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223362

Protein	Function_ID	Function_description	E-value
NZ_CP011391.1\|WP_145907782.1\|2164231_2164903_+\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	9.11274e-123
NZ_CP011391.1\|WP_067559295.1\|2175519_2177169_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	7.02091e-81
NZ_CP011391.1\|WP_067559306.1\|2181580_2183344_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP011391.1\|WP_158507789.1\|2172512_2173229_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.62489e-68
NZ_CP011391.1\|WP_067559279.1\|2170649_2171552_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	2.68884e-45
NZ_CP011391.1\|WP_067555742.1\|2166368_2167790_-\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	4.31589e-21
NZ_CP011391.1\|WP_067553967.1\|2157468_2158818_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	6.79089e-133
NZ_CP011391.1\|WP_145907679.1\|2180767_2181130_-\|hypothetical-protein	gnl\|CDD\|341491	cd17792, CtkA, serine/threonine-protein kinase CtkA and similar proteins. The Helicobacter pylori serine/threonine-protein kinase CtkA (proinflammatory kinase), encoded by the jhp940 gene, has been shown to be secreted by the bacterium and to induce cytokines in gastric epithelial cells. It may play a role in chronic gastric inflammation. CtkA autophosphorylates itself at a threonine residue near the N-terminus and it translocates into cultured human cells. It also enhances phosphorylation of the NF-kappaB p65 subunit at Ser276 in human epithelial cancer cells; phosphorylation at this position is known to activate the transcriptional activity of NF-kappaB.	8.76725e-17
NZ_CP011391.1\|WP_067559267.1\|2162441_2163083_-\|hypothetical-protein	gnl\|CDD\|377442	pfam05013, FGase, N-formylglutamate amidohydrolase. Formylglutamate amidohydrolase (FGase) catalyzes the terminal reaction in the five-step pathway for histidine utilisation in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolyzed to produce L-glutamate plus formate.	0.00124057
NZ_CP011391.1\|WP_067559286.1\|2173134_2173845_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.5558e-56
NZ_CP011391.1\|WP_067559260.1\|2155613_2157284_-\|biosynthetic-type-acetolactate-synthase-large-subunit	gnl\|CDD\|272915	TIGR00118, Probable_acetolactate_synthase_large_subunit, acetolactate synthase, large subunit, biosynthetic type. Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this model also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed. [Amino acid biosynthesis, Pyruvate family].	0
NZ_CP011391.1\|WP_067559262.1\|2159432_2160866_-\|hypothetical-protein	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	4.5327e-60
NZ_CP011391.1\|WP_082743384.1\|2177460_2180223_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.3032e-83
NZ_CP011391.1\|WP_067559292.1\|2174920_2175523_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	2.67033e-36
NZ_CP011391.1\|WP_067559289.1\|2173844_2174918_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.06808e-161
NZ_CP011391.1\|WP_067559281.1\|2171551_2172520_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.59751e-129
NZ_CP011391.1\|WP_145907666.1\|2160865_2162449_-\|hypothetical-protein	gnl\|CDD\|215012	smart01073, CDC48_N, Cell division protein 48 (CDC48) N-terminal domain. This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases is a substrate 185-residue recognition domain.	2.84637e-06
NZ_CP011391.1\|WP_067559270.1\|2163063_2164191_-\|hypothetical-protein	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	2.67779e-82

>NZ_CP011391.1|WP_067555742.1|2166368_2167790_-|IS110-family-transposase
MAVRNRKPVCVGLDVHRNNVWACVTFKDPAKGKDGLVFVTKKFDSNHTDLASMCEWIYTTLPDLEDRAIDVYMESTGKYSTPVFDVCEEMGLKPHIVNPKHVRTIAGQKTDQKDCAWIAELGANGLLRESYIPVRELRESRRLSRSRTKLVQERGDTIRRIRNILTEANIRMDLVFSGIEGESARSVIEYLLTTEEPDLEEVKKRIRKSCRIMRFSTHKERKEKEEELRKAFAGAKFSSVQKFELENAYERVDRLTAQIQRYEQMMTEILEPFKSYLDLLDSIPGISGLSAMQILSETGTDMGQFKNEKHFISWCGLCPQSNQSNNKHKSVKIGKGGYYLKPVLIQCALNAVKHPYFKGKYEAIAARRGKKRALIAIARKMMVLAYHMFQTGEYFQERKKQIPAVLEKEQSEREQSMETSAEATDAPAIIRTAKEIVEMLQNTDDEMKHKIEQLLAQIGIAQCEYQTGAISTI
>NZ_CP011391.1|WP_145907673.1|2165579_2166251_+|hypothetical-protein
MKQLRPAVILIPLLLVALALAGLTWKDRQAQKELAELYTPSEVWQSADPNELFSPEIIGGFQNEDMTVITIRQKTTVPMQTGAQTLYLRAGNTARSAAYFPATNSTDTVYSYAAFDGTSLEDALAAQMEYGTAEAGYLKTDDRVHEWEVDFTQDNDIISGRLPTDAFMEQPLAPQFNILFMQGKQVVFADVLNEEIEVGSPVRFEYRLPFVLPEFDRIIVRTM
>NZ_CP011391.1|WP_145907669.1|2164948_2165551_-|hypothetical-protein
MQKIKDMTGKSRALYIVISALCLALACWACTSTLRTWVQVASVIIMMASVLMIILLLIPRAGAEKSQDSPYAPQLQQLVLLNHDGQEKLSRIRQLVDTLFGAGSLTAARFSGAAQSALSVLAGNVDQGQRAVAAFGSDSPTKERELVFSGYIRESQSVLDQLDRLLLLLVQYDQSQDHDAESVTAQLEEITSTIHLYEHN
>NZ_CP011391.1|WP_145907782.1|2164231_2164903_+|uracil-DNA-glycosylase
MTNNSWDALIQREKEKEYLNDLDWALAREYKTKKIYPPKEQIFEALKKTPKENVKVVILGQDPYHGEGQAHGMAFSVNHGVKIPPSLRNMYKELENEYQVPFSRDGNLEDWAKDGVLLLNPILTVEEGRPLSHEKLGWQRFTDEIIDELEKQDQPIVYLLWGSRARQKKERIHNPNHLVLESPHPSPLSASRGFFGNGHFRKANEFLEAHGVQPVNWTRSTLK
>NZ_CP011391.1|WP_067559270.1|2163063_2164191_-|hypothetical-protein
MTLSEKIAALESRIGINRPPGQLRKLMEQHIPETLKIPAIQVAGTNGKGSTVTWMSLLADRPVIGTFTSPHMFSHFERMAVNHQPIPADKWEEIYDRWLPLFEEQDFTMFEADLWMAMVWFAENRVDLMLMETGLGGERDATTALDYLATGITNIGRDHMQYLGNTLEEIAKAKAGIFKPGIPALTAEQDPALFEILSREAAQAGTLLTKVPALSLPEDFPKYQEANLGLAAALLTAANIPVKPLEQAEKNFFWPGRMQVVSQDPLQVVDGAHNPEGIEALCRSLPGVDRIFFSVLADKQAPEMIRRLLETGKAVTLVRFDTRRLADLEELSAQFGLDLVSLEESLSSDKPALYCGSLKFAAAVLKGKHYDKHEF
>NZ_CP011391.1|WP_067559267.1|2162441_2163083_-|hypothetical-protein
MTSMNFDDIQDLEQAFQSGNLPPLLVLPGSIPVLVSAPHAVTHWRDGREKNADLYTGALALWLHAQTGCAVLAAGQSRNADGNHDPASISPYKQELARILQDDPVKVVLDLHGAKASQPFDVELGTGPGWEGKSPLVQKARLCFLTQGFNPEKIWSDRLFSAAKTETVTRFCIRDLKVPALQLEINRKYRDPDNPENLAMLLNALKDLVISCA
>NZ_CP011391.1|WP_145907666.1|2160865_2162449_-|hypothetical-protein
MPEMLRFADGVMVPVMPADGKMETGADASQETEASNGAEAVKGSGSSSETLFHEDVLPEAALAADWLQAWCDWKKKPVKVTATRQGVILDPMDRECLTALENIPYDTRYRVCRLGRAVRHKPQDRVVTPDFPPFSRLQAVGPQGAQATLWTNPAAGSEKPETGEILLTNRLIRTLYGREWIEGTEETPGLEGAPLLVGADFEENYDLGLPKADQISRVYFSSLLYQDLEPEAADSDFWLYNPLTDTRMYLPFEGSDYQDHGRVVKNGKSARKVMVPRYYRILMGWASYPVARIRKESYVRLLEEMTPEQRDLMTQTYHPVESEMFYDLDAALDPESRLYQDLAVLQTQSPLFHRAEILRRPRRMIRRPLPAKLWNRLLEHMIGTAEFDLKVTWTQDTDDRNSIARLNPDMMTLLGVGENDKIIIRYGRDSLSLRVLNCETVDSGQIGLPAPARLKLGMNSVNDVVTVGRNMNHILSKYSQVQAMTILGTLLAVSEVLPDVWTSLAVSALAAPVLVYFVLREEREKVR
>NZ_CP011391.1|WP_067559262.1|2159432_2160866_-|hypothetical-protein
MKRQEENRGPAVDMQGNQEPVPDMTCEQAVDYIYASWQKADPDRQWDVPDSRKRHPELTASWLSKPVSVPTALVTGSKGKGSTARMLAALLEKQGPCGLLTSPHILDFRERIRLGGSMIGCRDFSRLVGEAKACLDTVAVPSGQFISPIGSQAMTARLYFEENHAAFQVFECGKGVQFDDVGSIPHETALVTPVFKEHLRELGGSLEAIARDKAHILQPGTRTLVMARQDQAVRKIFRDRAQSLGVRVLEYGRDFRASNLQRTEDGIRFDVHTPDNEYRDVLLPTLAAFQAENCALALAASEVMTGKPSDPALLKSLDFAGRQEVLRRSPLWLLDACINRESACQLADSLRALNVKDALLVLAVPDDKDPAGTARILAPFAGEIRICPVTSGHYRITEDQCRVLWNLGVPVNWCPSMDAALADRLWETVCARDPARQDRPVILAGTTAFVSDVYRWMQKQRRPADSVNGRGFPAGSR
>NZ_CP011391.1|WP_067553967.1|2157468_2158818_-|group-II-intron-reverse-transcriptase/maturase
MNQTRLIQPEDLSTQEIFSMENLTNACRQVRRNNGAAGVDGVKARELPACPGEYWERLREQILGRSYKPLPAKRTDIPKPDGSLRGLNVPAARDRVIQACLANYLDYRKDFEMSNSSYGFRKNRRCEQAILKGLEFMNDGYDWIVDIDLRKFFDTVDQDRLIRLIDNLFHNRDVTSLTRKFVRAGVMIDGRLVRTERGIPQGGPLSPVLANIYLDQADKELESRGLRFTRYADDMLIYVKSEAAANRVMKSFSNYLEKKLKLEVNASKSKVARPDEVKYLGFGFKRNKREWKAIPHEKSIHEFEQKIMKLTKRNWSVSLEERIEKINQVIRGWSNYFRCAWLYKETVRKLDSKLRRRIRAIIWKQWKSIRKKEESLIKLGCPRDKAHSYACARQGYVRCAITFLNKYIRNIHLKKKGLLSMEEYFDTVAVRFMKTFVRTAQCRTARWVV
>NZ_CP011391.1|WP_067559260.1|2155613_2157284_-|biosynthetic-type-acetolactate-synthase-large-subunit
MLLSGADIVIETLIEQGTKTVFGYPGGQVINLYDALYKREDRIHHVLTAHEQGACHAADGYARATGDVGVVIATSGPGATNLVTGIATAYLDSTPLVAITGNVPNALIGRDSFQEVDITGVTLPVTKHNFFVKDYTELADTIRKAFRIAKSGRPGPVLVDIPKDVQVQMQEYEPVPVVEKEAQRPVKLRKIQAAADMIAEAVSPYIYIGGGVITADASEEVLALAEKIDAPIGSTLMGLSAIDNDNERFLGMVGMHGHYPASVGQDEADLIIAIGARFSDRATGDVSKYAKGARIIHMDIDRAEIDKNISSDLGIGGDLKEALTALIEAVKPARHPAWNARLDALRVIGEEQLEATLDPKELTPHSLIWEVARHTEADTPVVTDVGQHQMWTAQYYPFHKRRTFITSGGLGTMGFGMGAAIGAAQATGKKTVLFTGDGSFGMNLNELATAVSQNTPLVIVIMNNNVLGMVRQWQNLFFDKHYSQTTLNRQTDFVKLAEAFGARGLRIMNRQELGPVMAEAFAHTGPVVVDVAIDPDAFVLPMLPPGGSFDDIITEV
>NZ_CP011391.1|WP_067559279.1|2170649_2171552_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MIVVTVSVCTPSLRGDLTKWLFEIAPGVYVGDVSARVRDRLWERIGKNIGSGRACMVYGVRSETHFAFKTIGETWEPTDFDGITLMKHPLKSNKAQKADSKKWEESCKTGSQKKAGRSIQSSLPGNYVVLDLETTGLDPLKDQIIEIALIKVVDDAVTEEFRRFIQVRGEVSPFIEQLTGITNNRLKAEGIGLKQALEESLDFIRSNPLVCHNADFDLGFLREACVKEGVPFPNYRVFDTLNLARQKITGIKNYRLNTLIDCLGLMPHPSHEGLADCLAVHSLLCELKKIGCGKQEKPFT
>NZ_CP011391.1|WP_067559281.1|2171551_2172520_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MPDPGPKGALRPELQELPKISDRWTFLYLEHCTVSRESNALRAEDQNGYVLIPSHSFLVLMLGPGTRVSHRAMELIADSGVTVIWVGEAATKFYAGGRPLSANSALLQKQAKLVSNQRLHIQVVRKMYSMRFPGEDVEGLTLQQLRGKEGSRVRSLYKKLSEEWHVPWNGRNYKPDDFDNSDDVNKALSVANTCLYGLVHSVVAALGLAPGLGFIHVGLDKSFIYDIADLYKAEYTIPLAFELAGTGTKNIAWETRKRVRDEFYESHLIERIVKDLQWLLTDTDEDADSGNDEGTLCLWDGNRGCTEAGVQYFPRKEGKREG
>NZ_CP011391.1|WP_158507789.1|2172512_2173229_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MKVKTQKKETIRTLSTMLWQNWRIYMILTRIELDPTKRATIMALSNPNRFHGAIEKSRSVEGERILWRIDELRGKKYLMILSPSTVDSQLLANQFGYPGESPQQKNYDPLLERITQGSVWNFRLTANPTFSSPADRKDPQGRGKVKGEISTTVQLKWLERKAEANGFSLKPDQFGVVGSRWVTFKKQAERRKVSLTQVTYEGVLTVTDPELFKKALVDGIGRGKAYGMGLLTVVTPHA
>NZ_CP011391.1|WP_067559286.1|2173134_2173845_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MFTLLLRLAGPLQSWGTDSRFEVRRTEFYPTKSGVLGLLAAALGRRRDADVSDLAKLKFGIRIDQPGVLMNDFHTARKDEKTSYITNRYYLSDAVFVAGISSENRQFLEELQQAVKSPEYPLFLGRRSCPPSLPMDLGIVDCSLKQALEECPWQGTGSPDRHDRTIILEGPAGKLARRIMDEPVSYDIRHRKYESRIVSEYPAPCFEGENAKKRDYPDFEHDAMAELEDLHDIDKN
>NZ_CP011391.1|WP_067559289.1|2173844_2174918_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MNKKRIYVDVHCLQTVPPSCVNRDDTGSPKTCIYGGVTRSRVSSQAWKRAVREEFRNLLPAESRGVRTKKIVEMVKEEILKLKDTMSPEQAEKDAEKALVNAGLKIKSADKGTDALMFMSRRQAAALADLSVNGESDKKKYKAALAANPSVDMALFGRMVASDPSLNYDASAQVAHAISTHNVKNEYDYFTAVDDMSPEDNAGAGHIGVNEYNSGTLYRYATVNVMELYRSLGLETPEAVKAFVEAFVKSMPTGKQNSYANNTLPCAVYVAVREDQPVSMVGAFEKPVPATSNGFEHESETRLEEYAEKAYKQFVKEPFAAFVSGEGLEKLGDSKPFDQVLDELETVVKDLLPTGEE
>NZ_CP011391.1|WP_067559292.1|2174920_2175523_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTKRSEVARFVAHRIGLIEHGSSPGDAKAELANLRRGLGKQPGELPELWGSFLEDIPGGLVGKGKKPSAAENAIYTAMTLYALAQQGADPAIHSANQKDITLGRAAGRYAGADETDRERMERRLKSILSSETVEDMGHGIRGIIQLIRDKDIRLDFPRLAADLYTYSFPEGKEQVRLEWARDFYRREKTDTKDNQEKENN
>NZ_CP011391.1|WP_067559295.1|2175519_2177169_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MTEKCFNLVDSPWILVKDQEDHTEEVSLEKVLTNAQDYRDLAGETAAQNAAVLRLLIAINHTVITRMDSPVEDEEEALDRWEEIWKDGRLPEQAIKDYLSRWKDKFWLIDPEGGFLQSKTAEIGTDYKASKLTGDLSESNHKLRLFQLRSGESKESLTMAEAARWLLNVNAYDDTSAKAKGTQPNGEKFPSIGAGWLGKLGQIYAYGSNLFETIMLNTVLLKSDDSIWGKDKPYWEEQEKVRQRQEIRMPDNQAGLLTFPSRLLLLKEQNGRITGFNLLGGGFFEKTDAFNEPFTTWRPVKGKKNEPVHFVPRRHDAARQIWRDFASIAGFGREKEGQEIHLPGIVLWIKTLQAENLIPDSQPIEFTMPFVQYGDKDFFVTDTSTQSLMMYPKLLTEAGKEWRTIIEEEISKIDTAAYDTGILAQTVAEASGDSGESVTKFAVKGRALAYENADEPFRTWLATLNPSTYEDEEARQGKREELQRKLRNCFLRLECTVVGVPPVNALFSRQVMKGGKMVRVLSVPEAEMRFEAQINKLYPKITQKEGGTE
>NZ_CP011391.1|WP_082743384.1|2177460_2180223_-|CRISPR-associated-helicase/endonuclease-Cas3
MEWELLNQLKAACKGAIAKADQESNKYLPLWMHMTDTAGIMIKLYEHRVSDQEKEFFIQQGVDSGRLYRLFALCGMLHDLGKETCVFQSMLLEKLKGYAGFQGHTLPYKRFGVSDYLHHSRSSLLILVSLGFSEAFASVLGGHHGRSQDALTGEPIQKAKETISQYPVAMYGSLQEKEFWQDAWKEIVETVCRVCGISRSEIPDLSLNAWLLLSGILVEADWISSNTDYFPLIPVSENPGEDIYPDRIEKAWNDLALTNAWHKHGAEMSCEVFKGMFGFSPNPVQAELIQIVTSCSDPGILVIEAQMGVGKTEASLAAADVYADKRGSGGIYFGLPTQATSNGLFPRFEEWAAEVSQGGKQSLKLAHGMAAFNEKYRKIPHGTARLNEDEKNDESSLIVHDWMQGRKVGMMSDFVVGTVDQGLMTALNQRHVMLRHAGIAGKTVIIDEVHAYDAYMNMYLERMLEWLGSYHAPVILLSATLPQSRRINLILAYQRGRFGKKYQEEGNPGWTTVAGYPLFTWTDGKEIDCRSLILEGKGQKVTIIKEKILSTEDGEQKVYSILEEQLGDGGVAGIIVNTVKKAQELAHYLQKALPGWQIIPFHSRFTSLGRAKVEKEVLSLAGKGTAESRQKIRDRLVIVGTQVIEQSLDVDFDLMITELSPMDLLLQRIGRLHRHKDRVRPKNLEEPVCHVLIPGDKKTDRSVSAVYSDWLQYQTEKHLPQSIDIPEDIPRLVNAVYKDADESDQLQEEQDKYHNYLNEEKGKEDKAEIAILAPPYKKLRMDHGINGLKISNAKTSEERGLATVRDIKPSISCILLKGEKAGAFRPVDDEHMLLKSDQKLSFREVQTLLKEVISLPISIPYEAAETELEQTTKNRFPLWMDNPIMKDRLILVINEKGDAELAGFNLHYSTEFGLESRKIR
>NZ_CP011391.1|WP_145907679.1|2180767_2181130_-|hypothetical-protein
MELYPMKCLHSADPFSSRQTAKVTVSILYEMMRDLGDGFLTHQAVEHYWNMFVIDYLIGNYDRHLENWGKDLDDRGVRFPVPVYDCGFSLLALESDEELAGLIGQPGVTGIFIDIHNIVR
>NZ_CP011391.1|WP_067559306.1|2181580_2183344_-|ABC-transporter-ATP-binding-protein
MQTFKYFVSFYKPYKGMFFLDLFCAAVISAVDIAFPLIFGWCTGTLFLEGPDAIYHGLTWLIPAMLVMYIVKAACRYYVTCQGHIMGAKMETDMRRDLFEQLQRLSFGFYDRTNTGTLTSRIVSDLFDISELAHHGPENLFISLIKILGSFAVMLCINWQLGLCLGAVTLVMLWFSAVQNKRMEATFADNRKKVAGINASVVDSLEGIRVVQSFANEPLELQKFGKANENYLKSKEANYRAMGAYYTGNHFFQGLLYVTIVLAGGLLAARGEISIGELATFVLYVNVFVSPLEILIELTEMFQKGFSGFRRFEEIMKEVPDIQDAPDAGELRDVKGDVSFHDVSFAYEDGVPVLENISFDIPAGRNVALAGPSGSGKTTICSLIPRFYDATAGEVLVDGQNVKDLQLHSLRDAIGVVQQDVYLFDGTIADNIRYGKWDATEEEIMDAVRKANLQDLIDSLADGLETQVGEKGTRLSGGQKQRISIARLFLKDPKILILDEATSALDNESEAVIQRSLRDLAKGRTCLTIAHRLSTIQNADEILVIDDGGIAERGTHKELMKKNGIYARYCRIQFENAGGDADGGIRE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011391_1	1.15\|138110\|34\|NZ_CP011391\|PILER-CR,CRISPRCasFinder,CRT	138110-138143	34	MK448718	Streptococcus phage Javan253, complete genome	11379-11412	7	0.794
NZ_CP011391_5	5.7\|2168501\|33\|NZ_CP011391\|CRISPRCasFinder,CRT	2168501-2168533	33	NZ_CP024896	Amycolatopsis sp. AA4 plasmid unnamed2, complete sequence	16437-16469	7	0.788
NZ_CP011391_5	5.7\|2168501\|33\|NZ_CP011391\|CRISPRCasFinder,CRT	2168501-2168533	33	NC_011216	Burkholderia phage KS10, complete genome	11327-11359	7	0.788
NZ_CP011391_5	5.7\|2168501\|33\|NZ_CP011391\|CRISPRCasFinder,CRT	2168501-2168533	33	KU873925	Pseudomonas phage pf16, complete genome	125198-125230	7	0.788
NZ_CP011391_5	5.7\|2168501\|33\|NZ_CP011391\|CRISPRCasFinder,CRT	2168501-2168533	33	NC_018023	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.02, complete sequence	113999-114031	7	0.788
NZ_CP011391_1	1.15\|138110\|34\|NZ_CP011391\|PILER-CR,CRISPRCasFinder,CRT	138110-138143	34	MK448716	Streptococcus phage Javan249, complete genome	12927-12960	8	0.765
NZ_CP011391_5	5.7\|2168501\|33\|NZ_CP011391\|CRISPRCasFinder,CRT	2168501-2168533	33	NC_019848	Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence	257826-257858	8	0.758
NZ_CP011391_5	5.7\|2168501\|33\|NZ_CP011391\|CRISPRCasFinder,CRT	2168501-2168533	33	NZ_CP019585	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence	1224153-1224185	8	0.758
NZ_CP011391_5	5.7\|2168501\|33\|NZ_CP011391\|CRISPRCasFinder,CRT	2168501-2168533	33	NZ_CP032827	Sphingomonas sp. YZ-8 plasmid unnamed2, complete sequence	46533-46565	8	0.758
NZ_CP011391_5	5.7\|2168501\|33\|NZ_CP011391\|CRISPRCasFinder,CRT	2168501-2168533	33	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	105770-105802	8	0.758
NZ_CP011391_5	5.9\|2168623\|33\|NZ_CP011391\|CRISPRCasFinder,CRT	2168623-2168655	33	NC_019517	Enterobacteria phage vB_EcoM-FV3, complete genome	69682-69714	8	0.758
NZ_CP011391_5	5.11\|2168745\|33\|NZ_CP011391\|CRISPRCasFinder,CRT	2168745-2168777	33	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	169405-169437	8	0.758
NZ_CP011391_5	5.15\|2168989\|33\|NZ_CP011391\|CRISPRCasFinder,CRT,PILER-CR	2168989-2169021	33	NZ_CP022220	Bradyrhizobium guangxiense strain CCBAU 53363 plasmid p53363, complete sequence	974421-974453	8	0.758
NZ_CP011391_5	5.15\|2168989\|33\|NZ_CP011391\|CRISPRCasFinder,CRT,PILER-CR	2168989-2169021	33	NZ_CP030052	Bradyrhizobium guangdongense strain CCBAU 51649 plasmid unnamed, complete sequence	587261-587293	8	0.758
NZ_CP011391_5	5.15\|2168989\|33\|NZ_CP011391\|CRISPRCasFinder,CRT,PILER-CR	2168989-2169021	33	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	864082-864114	8	0.758
NZ_CP011391_5	5.15\|2168989\|33\|NZ_CP011391\|CRISPRCasFinder,CRT,PILER-CR	2168989-2169021	33	NZ_CP030054	Bradyrhizobium guangzhouense strain CCBAU 51670 plasmid unnamed1, complete sequence	766854-766886	8	0.758
NZ_CP011391_5	5.32\|2170026\|33\|NZ_CP011391\|CRISPRCasFinder,CRT,PILER-CR	2170026-2170058	33	CP034582	Lactococcus lactis subsp. lactis strain C10 plasmid pC10B, complete sequence	21835-21867	8	0.758
NZ_CP011391_5	5.32\|2170026\|33\|NZ_CP011391\|CRISPRCasFinder,CRT,PILER-CR	2170026-2170058	33	CP029292	Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed5	41940-41972	8	0.758
NZ_CP011391_5	5.7\|2168501\|33\|NZ_CP011391\|CRISPRCasFinder,CRT	2168501-2168533	33	NZ_LR134454	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence	80720-80752	9	0.727
NZ_CP011391_5	5.32\|2170026\|33\|NZ_CP011391\|CRISPRCasFinder,CRT,PILER-CR	2170026-2170058	33	NZ_CP034577	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08D, complete sequence	3001-3033	9	0.727
NZ_CP011391_5	5.32\|2170026\|33\|NZ_CP011391\|CRISPRCasFinder,CRT,PILER-CR	2170026-2170058	33	NZ_CP016725	Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11F, complete sequence	3001-3033	9	0.727
NZ_CP011391_1	1.8\|137641\|34\|NZ_CP011391\|PILER-CR,CRISPRCasFinder,CRT	137641-137674	34	MN693187	Marine virus AFVG_25M473, complete genome	28566-28599	10	0.706
NZ_CP011391_5	5.7\|2168501\|33\|NZ_CP011391\|CRISPRCasFinder,CRT	2168501-2168533	33	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	325056-325088	10	0.697
NZ_CP011391_5	5.23\|2169477\|33\|NZ_CP011391\|CRISPRCasFinder,CRT,PILER-CR	2169477-2169509	33	NZ_CP019446	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-1, complete sequence	32390-32422	10	0.697
NZ_CP011391_5	5.32\|2170026\|33\|NZ_CP011391\|CRISPRCasFinder,CRT,PILER-CR	2170026-2170058	33	KJ951052	Streptococcus dysgalactiae subsp. equisimilis strain G271 plasmid pG271, complete sequence	1918-1950	10	0.697
NZ_CP011391_5	5.32\|2170026\|33\|NZ_CP011391\|CRISPRCasFinder,CRT,PILER-CR	2170026-2170058	33	NC_010907	Streptococcus dysgalactiae subsp. equisimilis plasmid pSdyT132, complete sequence	2007-2039	10	0.697
NZ_CP011391_5	5.13\|2168867\|33\|NZ_CP011391\|CRISPRCasFinder,CRT,PILER-CR	2168867-2168899	33	MG711466	Faecalibacterium phage FP_Toutatis, complete genome	22555-22587	11	0.667
NZ_CP011391_1	1.16\|138175\|37\|NZ_CP011391\|PILER-CR,CRISPRCasFinder,CRT	138175-138211	37	MN856055	Myoviridae sp. isolate 330, complete genome	7022-7058	12	0.676

1. spacer 1.15|138110|34|NZ_CP011391|PILER-CR,CRISPRCasFinder,CRT matches to MK448718 (Streptococcus phage Javan253, complete genome) position: , mismatch: 7, identity: 0.794

cagtcccagccctcagtcagaagcatgctgttga	CRISPR spacer
cagtcccagccttcagtcagtagcattgagttac	Protospacer
***********.******** *****   ***.

2. spacer 5.7|2168501|33|NZ_CP011391|CRISPRCasFinder,CRT matches to NZ_CP024896 (Amycolatopsis sp. AA4 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

--aagtcgatgaacgccgtcagcgccgggatcacg	CRISPR spacer
cgtggccg--gaacgccgtcagcgccgcgatcacc	Protospacer
   .*.**  ***************** ******

3. spacer 5.7|2168501|33|NZ_CP011391|CRISPRCasFinder,CRT matches to NC_011216 (Burkholderia phage KS10, complete genome) position: , mismatch: 7, identity: 0.788

aagtcgatgaacgccgtcagc----gccgggatcacg	CRISPR spacer
atgtcgatgaacgccgtcagctccggccggaac----	Protospacer
* *******************    *****.*.

4. spacer 5.7|2168501|33|NZ_CP011391|CRISPRCasFinder,CRT matches to KU873925 (Pseudomonas phage pf16, complete genome) position: , mismatch: 7, identity: 0.788

aagtcgatgaacgccgtcagcgccgggatcacg	CRISPR spacer
aagtcgatgaacgccagcagcgccgcgtatgcg	Protospacer
***************. ******** *  ..**

5. spacer 5.7|2168501|33|NZ_CP011391|CRISPRCasFinder,CRT matches to NC_018023 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.02, complete sequence) position: , mismatch: 7, identity: 0.788

aagtcgatgaacgccgtcagcgccgggatcacg	CRISPR spacer
accgcggagaacgccgtcgccgccgggatcacg	Protospacer
*   **. **********. *************

6. spacer 1.15|138110|34|NZ_CP011391|PILER-CR,CRISPRCasFinder,CRT matches to MK448716 (Streptococcus phage Javan249, complete genome) position: , mismatch: 8, identity: 0.765

cagtcccagccctcagtcagaagcatgctgttga	CRISPR spacer
cagtcccagccctctgtcaaaagcattgaattac	Protospacer
************** ****.******   .**.

7. spacer 5.7|2168501|33|NZ_CP011391|CRISPRCasFinder,CRT matches to NC_019848 (Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence) position: , mismatch: 8, identity: 0.758

aagtcgatgaacgccgtcagcgccgggatcacg	CRISPR spacer
gatatgttggacgccgtcagcgccgcgatcacc	Protospacer
.*  .* **.*************** ******

8. spacer 5.7|2168501|33|NZ_CP011391|CRISPRCasFinder,CRT matches to NZ_CP019585 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.758

aagtcgatgaacgccgtcagcgccgggatcacg	CRISPR spacer
gatatgttggacgccgtcagcgccgcgatcacc	Protospacer
.*  .* **.*************** ******

9. spacer 5.7|2168501|33|NZ_CP011391|CRISPRCasFinder,CRT matches to NZ_CP032827 (Sphingomonas sp. YZ-8 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

aagtcgatgaacgccgtcagcgccgggatcacg	CRISPR spacer
catctgatgaacgccgtcgccgccgggatggcg	Protospacer
 * ..*************. ********* .**

10. spacer 5.7|2168501|33|NZ_CP011391|CRISPRCasFinder,CRT matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 8, identity: 0.758

aagtcgatgaacgccgtcagcgccgggatcacg----	CRISPR spacer
gagtcgatgaacgccatcaacgccg----cccgccgc	Protospacer
.**************.***.*****    * **

11. spacer 5.9|2168623|33|NZ_CP011391|CRISPRCasFinder,CRT matches to NC_019517 (Enterobacteria phage vB_EcoM-FV3, complete genome) position: , mismatch: 8, identity: 0.758

ttgacaagattgtgtgcagggcgttgaccttga	CRISPR spacer
tatggaagattgcgagcagggcgttgacctttt	Protospacer
*  . *******.* ****************

12. spacer 5.11|2168745|33|NZ_CP011391|CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

catgtaggggttttcgccatgccgctgctccca	CRISPR spacer
gacggggacgttttcgccatgccgctgattcca	Protospacer
 *.* .*. ****************** *.***

13. spacer 5.15|2168989|33|NZ_CP011391|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022220 (Bradyrhizobium guangxiense strain CCBAU 53363 plasmid p53363, complete sequence) position: , mismatch: 8, identity: 0.758

cgcttcatcagccagttcgactccatctttgag	CRISPR spacer
agcatcatcagccagttcgtctccaccatcaaa	Protospacer
 ** *************** *****.* *..*.

14. spacer 5.15|2168989|33|NZ_CP011391|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030052 (Bradyrhizobium guangdongense strain CCBAU 51649 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

cgcttcatcagccagttcgactccatctttgag	CRISPR spacer
agcatcatcagccagttcgtctccaccatcaaa	Protospacer
 ** *************** *****.* *..*.

15. spacer 5.15|2168989|33|NZ_CP011391|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

cgcttcatcagccagttcgactccatctttgag	CRISPR spacer
atcatcatcggccagttcggctccatctatccg	Protospacer
  * *****.*********.******** *  *

16. spacer 5.15|2168989|33|NZ_CP011391|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030054 (Bradyrhizobium guangzhouense strain CCBAU 51670 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

cgcttcatcagccagttcgactccatctttgag	CRISPR spacer
agcatcatcagccagttcgtctccaccatcaaa	Protospacer
 ** *************** *****.* *..*.

17. spacer 5.32|2170026|33|NZ_CP011391|CRISPRCasFinder,CRT,PILER-CR matches to CP034582 (Lactococcus lactis subsp. lactis strain C10 plasmid pC10B, complete sequence) position: , mismatch: 8, identity: 0.758

-----gtatttatgtgtacataaaccccttgcttgcta	CRISPR spacer
tgagggt-----tgtgtacacaaacccgttgcttgcca	Protospacer
     **     ********.****** ********.*

18. spacer 5.32|2170026|33|NZ_CP011391|CRISPRCasFinder,CRT,PILER-CR matches to CP029292 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed5) position: , mismatch: 8, identity: 0.758

-----gtatttatgtgtacataaaccccttgcttgcta	CRISPR spacer
tgagggt-----tgtgtacacaaacccgttgcttgcca	Protospacer
     **     ********.****** ********.*

19. spacer 5.7|2168501|33|NZ_CP011391|CRISPRCasFinder,CRT matches to NZ_LR134454 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence) position: , mismatch: 9, identity: 0.727

aagtcgatgaacgccgtcagcgccgggatcacg	CRISPR spacer
gggtcgatgaacggcggcagcgccggcttcttc	Protospacer
..*********** ** *********  ** .

20. spacer 5.32|2170026|33|NZ_CP011391|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034577 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08D, complete sequence) position: , mismatch: 9, identity: 0.727

gtatttatgtgtacataaaccccttgcttgcta	CRISPR spacer
gggggattgtgtacacaaacccgttgcttgcca	Protospacer
* .    ********.****** ********.*

21. spacer 5.32|2170026|33|NZ_CP011391|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016725 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11F, complete sequence) position: , mismatch: 9, identity: 0.727

gtatttatgtgtacataaaccccttgcttgcta	CRISPR spacer
gggggattgtgtacacaaacccgttgcttgcca	Protospacer
* .    ********.****** ********.*

22. spacer 1.8|137641|34|NZ_CP011391|PILER-CR,CRISPRCasFinder,CRT matches to MN693187 (Marine virus AFVG_25M473, complete genome) position: , mismatch: 10, identity: 0.706

aatctgcttcacggacagctttcttcagattacg	CRISPR spacer
tactaccaccacagacagctttcttcaaattaca	Protospacer
 *..  * .***.**************.*****.

23. spacer 5.7|2168501|33|NZ_CP011391|CRISPRCasFinder,CRT matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.697

aagtcgatgaacgccgtcagcgccgggatcacg	CRISPR spacer
ctgtcgatgaacgccgccagcgtcggacgcggc	Protospacer
  **************.*****.***.  *.

24. spacer 5.23|2169477|33|NZ_CP011391|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019446 (Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-1, complete sequence) position: , mismatch: 10, identity: 0.697

gatacccaggcactgcgcaatgatgctgccttc	CRISPR spacer
gtcgaacaggtactgcgcaatgatcctgcccgt	Protospacer
* ..  ****.************* *****. .

25. spacer 5.32|2170026|33|NZ_CP011391|CRISPRCasFinder,CRT,PILER-CR matches to KJ951052 (Streptococcus dysgalactiae subsp. equisimilis strain G271 plasmid pG271, complete sequence) position: , mismatch: 10, identity: 0.697

gtatttatgtgtacataaaccccttgcttgcta	CRISPR spacer
tggggtttgtgtacacaaacccgttgcttgcct	Protospacer
  .  * ********.****** ********.

26. spacer 5.32|2170026|33|NZ_CP011391|CRISPRCasFinder,CRT,PILER-CR matches to NC_010907 (Streptococcus dysgalactiae subsp. equisimilis plasmid pSdyT132, complete sequence) position: , mismatch: 10, identity: 0.697

gtatttatgtgtacataaaccccttgcttgcta	CRISPR spacer
tggggtttgtgtacacaaacccgttgcttgcct	Protospacer
  .  * ********.****** ********.

27. spacer 5.13|2168867|33|NZ_CP011391|CRISPRCasFinder,CRT,PILER-CR matches to MG711466 (Faecalibacterium phage FP_Toutatis, complete genome) position: , mismatch: 11, identity: 0.667

tttctggctgctccggtcattgtgcagggcata	CRISPR spacer
cggtacattgccccggccattgtgcagggcatg	Protospacer
.  .  ..***.****.***************.

28. spacer 1.16|138175|37|NZ_CP011391|PILER-CR,CRISPRCasFinder,CRT matches to MN856055 (Myoviridae sp. isolate 330, complete genome) position: , mismatch: 12, identity: 0.676

tctaatttgtcgtaatctgctgtctgcatttcgtctt	CRISPR spacer
atcaatgtgtcgtaatctactgtctgcatacaagcac	Protospacer
 ..*** ***********.********** . . * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

28487 : 38754

Streptococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067553935.1\|28487_29393_+	DNA polymerase III subunit	M1NSC1	Streptococcus_phage	6.6e-09	25.4
WP_082743141.1\|29379_30540_+	stage 0 sporulation protein	NA	NA	NA	NA
WP_067553938.1\|30536_31418_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	5.9e-55	43.1
WP_067553942.1\|31604_32096_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.0e-16	39.5
WP_067553945.1\|32095_35791_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.2e-35	26.6
WP_067553949.1\|35787_37173_+	amidophosphoribosyltransferase	NA	NA	NA	NA
WP_067553952.1\|37156_38185_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D8KMR0	Synechococcus_phage	1.0e-66	43.8
WP_067553955.1\|38181_38754_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	2.3e-23	35.6

DBSCAN-SWA_2

724633 : 786969

Leptospira_phage(15.38%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067555714.1\|724633_725401_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_067555717.1\|725617_725896_+	DUF4176 domain-containing protein	NA	NA	NA	NA
WP_067555720.1\|726134_726446_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_067555723.1\|726461_726710_+	hypothetical protein	NA	NA	NA	NA
WP_067553980.1\|726870_727224_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.6e-11	32.7
WP_075884548.1\|727348_729022_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	9.6e-38	28.2
WP_067555726.1\|729158_729482_+	hypothetical protein	NA	NA	NA	NA
WP_067555729.1\|729484_730495_-	hypothetical protein	NA	NA	NA	NA
WP_067555732.1\|730491_730725_-	hypothetical protein	NA	NA	NA	NA
WP_067555735.1\|731073_731640_+	recombinase family protein	M9Q1K0	Clostridium_phage	2.6e-32	54.0
WP_067555739.1\|731725_732874_+	recombinase family protein	E5DV73	Deep-sea_thermophilic_phage	1.4e-43	33.2
WP_067555742.1\|733008_734430_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_145907487.1\|734561_734858_+	hypothetical protein	NA	NA	NA	NA
WP_067555747.1\|735383_736715_-	peptidoglycan bridge formation glycyltransferase FemA/FemB family protein	NA	NA	NA	NA
WP_082743223.1\|737940_738285_+	hypothetical protein	NA	NA	NA	NA
WP_067555756.1\|738299_739589_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_067555759.1\|739585_740266_+	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	1.3e-09	27.7
WP_075885700.1\|740357_741194_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_067555762.1\|741190_741760_+	hypothetical protein	NA	NA	NA	NA
WP_067560075.1\|741901_744454_+	DNA polymerase I	F8WQ35	Bacillus_phage	7.0e-48	30.4
WP_067555764.1\|744453_745332_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	2.3e-30	33.6
WP_158507699.1\|745501_746113_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_067555770.1\|746093_747287_+	hypothetical protein	NA	NA	NA	NA
WP_082743225.1\|747283_748189_+	ATP-binding protein	NA	NA	NA	NA
WP_067555776.1\|748297_749164_+	class II fructose-1,6-bisphosphate aldolase	NA	NA	NA	NA
WP_158507701.1\|749516_750896_+\|transposase	transposase	A0ZS58	Staphylococcus_virus	4.1e-34	29.0
WP_067555782.1\|751090_751279_-	hypothetical protein	NA	NA	NA	NA
WP_067555785.1\|751495_752761_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_067555788.1\|752816_753296_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_067560076.1\|758711_760262_+	cardiolipin synthase	NA	NA	NA	NA
WP_145907499.1\|760277_761654_-	class II fumarate hydratase	NA	NA	NA	NA
WP_067555794.1\|761937_764031_+	type I pullulanase	NA	NA	NA	NA
WP_067555797.1\|764127_765639_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-58	34.1
WP_158507703.1\|765785_766892_+	radical SAM protein	NA	NA	NA	NA
WP_082743227.1\|766888_768838_+	hypothetical protein	D9ZNH0	Clostridium_phage	1.7e-70	29.3
WP_067555804.1\|769293_769854_-	hypothetical protein	NA	NA	NA	NA
WP_082743228.1\|770113_771325_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_067555809.1\|771317_773486_+	ATP-dependent RecD-like DNA helicase	A0A1P8DII4	Virus_Rctr197k	2.9e-34	27.2
WP_067560079.1\|773958_776583_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.4e-59	33.0
WP_067555813.1\|776745_776997_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA
WP_067555816.1\|777000_777426_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_067555819.1\|777590_777848_+	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_067555822.1\|777837_778929_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_067555825.1\|778942_779422_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_145907503.1\|779437_779728_+	hypothetical protein	NA	NA	NA	NA
WP_082743231.1\|784932_785676_-	hypothetical protein	NA	NA	NA	NA
WP_067554245.1\|785785_786085_+\|transposase	transposase	NA	NA	NA	NA
WP_067554248.1\|786081_786969_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.1e-44	36.4

DBSCAN-SWA_3

1366532 : 1379118

Lactococcus_phage(16.67%)

head,tail,terminase,portal,protease,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067557250.1\|1366532_1368005_-\|tail	phage tail family protein	Q9AZL3	Lactococcus_phage	3.2e-53	30.3
WP_067557253.1\|1368006_1371753_-\|tail	phage tail tape measure protein	A3F654	Streptococcus_phage	7.3e-54	30.8
WP_067557256.1\|1371953_1372376_-	hypothetical protein	NA	NA	NA	NA
WP_067557259.1\|1372428_1373028_-	hypothetical protein	Q0H233	Geobacillus_phage	1.0e-26	40.0
WP_145907577.1\|1373043_1373430_-	hypothetical protein	NA	NA	NA	NA
WP_145907580.1\|1373464_1373797_-	hypothetical protein	NA	NA	NA	NA
WP_067557265.1\|1373775_1374123_-	hypothetical protein	NA	NA	NA	NA
WP_067557268.1\|1374112_1374403_-	hypothetical protein	NA	NA	NA	NA
WP_067557271.1\|1374411_1375641_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_067557274.1\|1375645_1376221_-\|head,protease	HK97 family phage prohead protease	A0A0N9SH70	Staphylococcus_phage	2.1e-16	34.7
WP_067557277.1\|1376132_1377380_-\|portal	phage portal protein	J9QE83	Clostridium_phage	2.5e-27	25.3
WP_067557280.1\|1377438_1379118_-\|terminase	terminase large subunit	H7BUQ3	unidentified_phage	1.2e-133	45.4

DBSCAN-SWA_4

1465367 : 1488833

Microcystis_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067557575.1\|1465367_1465715_+\|transposase	transposase	A0A075BS70	Microcystis_phage	9.2e-12	48.5
WP_082743310.1\|1465754_1465976_+\|transposase	transposase	NA	NA	NA	NA
WP_067557581.1\|1466695_1467064_-	YccF domain-containing protein	NA	NA	NA	NA
WP_145907361.1\|1467688_1468282_+	hypothetical protein	NA	NA	NA	NA
WP_158507643.1\|1468296_1469787_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_082743448.1\|1469893_1471222_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	F5CA72	Streptococcus_phi-m46.1-like_phage	1.5e-57	36.2
WP_067557584.1\|1471379_1471952_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_067557590.1\|1472202_1472793_-	hypothetical protein	NA	NA	NA	NA
WP_067557593.1\|1473138_1475022_-	molecular chaperone HtpG	A0A1V0SAD6	Catovirus	5.4e-98	33.6
WP_067557596.1\|1475233_1475821_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_067557598.1\|1476056_1476749_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_067557601.1\|1476941_1477853_+	hypothetical protein	NA	NA	NA	NA
WP_067557604.1\|1477849_1478719_+	sugar nucleotide-binding protein	NA	NA	NA	NA
WP_067557607.1\|1478796_1479222_+	hypothetical protein	NA	NA	NA	NA
WP_067557611.1\|1479380_1480235_-	hypothetical protein	NA	NA	NA	NA
WP_067557614.1\|1480431_1481301_+	hypothetical protein	NA	NA	NA	NA
WP_067557617.1\|1481578_1481806_+	hypothetical protein	NA	NA	NA	NA
WP_067557620.1\|1481807_1482080_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_067557624.1\|1482197_1482590_-	hypothetical protein	NA	NA	NA	NA
WP_082743311.1\|1482620_1483031_-	hypothetical protein	A0A0U4J920	Pseudomonas_phage	3.6e-07	30.0
WP_067554245.1\|1483155_1483455_+\|transposase	transposase	NA	NA	NA	NA
WP_067554248.1\|1483451_1484339_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.1e-44	36.4
WP_067557630.1\|1484370_1484865_-	hypothetical protein	NA	NA	NA	NA
WP_067557633.1\|1485381_1486788_-	DUF2812 domain-containing protein	NA	NA	NA	NA
WP_067557636.1\|1486968_1487151_-	hypothetical protein	NA	NA	NA	NA
WP_067557638.1\|1487411_1488833_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2033783 : 2038534

Bacillus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158507783.1\|2033783_2034353_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_158507784.1\|2034410_2034761_+	hypothetical protein	NA	NA	NA	NA
WP_067554245.1\|2034823_2035123_+\|transposase	transposase	NA	NA	NA	NA
WP_067554248.1\|2035119_2036007_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.1e-44	36.4
WP_145907650.1\|2036202_2036724_-	hypothetical protein	NA	NA	NA	NA
WP_067558923.1\|2036720_2037230_-\|transposase	IS607 family transposase	A0A125SJ73	Acidianus_tailed_spindle_virus	1.1e-21	39.7
WP_067554245.1\|2037350_2037650_+\|transposase	transposase	NA	NA	NA	NA
WP_067554248.1\|2037646_2038534_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.1e-44	36.4

DBSCAN-SWA_6

2263942 : 2305728

Wolbachia_phage(12.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067554667.1\|2263942_2265295_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	1.5e-25	24.4
WP_067559501.1\|2265650_2265887_-	hypothetical protein	NA	NA	NA	NA
WP_067559507.1\|2266171_2266918_-	hypothetical protein	NA	NA	NA	NA
WP_067559510.1\|2266933_2268904_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_067559513.1\|2268890_2269685_-	hypothetical protein	NA	NA	NA	NA
WP_067559516.1\|2269681_2270509_-	LD-carboxypeptidase	NA	NA	NA	NA
WP_067559518.1\|2270591_2271077_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.1e-26	49.7
WP_067559521.1\|2271170_2271815_-	hypothetical protein	NA	NA	NA	NA
WP_067559524.1\|2271914_2274209_-	HAD-IC family P-type ATPase	M1HBF8	Paramecium_bursaria_Chlorella_virus	1.8e-34	26.1
WP_145907701.1\|2274278_2275298_-	hypothetical protein	NA	NA	NA	NA
WP_158507793.1\|2275513_2276170_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_158507794.1\|2276147_2276969_-	HAD-IIB family hydrolase	NA	NA	NA	NA
WP_067559536.1\|2277163_2278513_+	ATP-binding protein	NA	NA	NA	NA
WP_067559539.1\|2278608_2279058_-	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_067559541.1\|2279054_2279483_-	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_067559544.1\|2279616_2280546_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA
WP_067559547.1\|2280618_2281395_+	hypothetical protein	NA	NA	NA	NA
WP_067559550.1\|2281391_2282255_+	DMT family transporter	NA	NA	NA	NA
WP_067559553.1\|2282426_2283428_+	hypothetical protein	NA	NA	NA	NA
WP_067559556.1\|2283655_2284324_+\|transposase	IS607 family transposase	A0A1V0S8F8	Catovirus	7.5e-18	31.2
WP_067559559.1\|2284320_2285742_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_067559562.1\|2286130_2287153_+	hypothetical protein	NA	NA	NA	NA
WP_067559565.1\|2287310_2288402_+	FUSC family protein	NA	NA	NA	NA
WP_158507795.1\|2288593_2289595_-	hypothetical protein	NA	NA	NA	NA
WP_067559571.1\|2289749_2290145_-	hypothetical protein	NA	NA	NA	NA
WP_067559574.1\|2290369_2290960_-	TVP38/TMEM64 family protein	M1Q152	Streptococcus_phage	1.5e-33	42.0
WP_067559577.1\|2291226_2291625_-	YxeA family protein	NA	NA	NA	NA
WP_082743399.1\|2291887_2292145_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_067559583.1\|2292144_2292414_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_067559586.1\|2292621_2295225_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	8.0e-92	33.5
WP_075885937.1\|2295296_2295587_-	metal-sensing transcriptional repressor	NA	NA	NA	NA
WP_067559592.1\|2295810_2296176_+	hypothetical protein	NA	NA	NA	NA
WP_067559596.1\|2296168_2297281_+	family 20 glycosylhydrolase	NA	NA	NA	NA
WP_158507796.1\|2297385_2298708_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_067559599.1\|2298831_2299566_-	HAD hydrolase family protein	NA	NA	NA	NA
WP_067559602.1\|2299846_2300377_-	hypothetical protein	NA	NA	NA	NA
WP_145907704.1\|2300484_2300808_-	hypothetical protein	NA	NA	NA	NA
WP_145907707.1\|2301015_2301225_-	hypothetical protein	NA	NA	NA	NA
WP_158507797.1\|2302001_2302394_-	hypothetical protein	NA	NA	NA	NA
WP_067559608.1\|2302466_2303567_+\|transposase	transposase	A0A146ICT8	Staphylococcus_phage	2.2e-27	34.4
WP_067559610.1\|2303753_2304290_-	hypothetical protein	NA	NA	NA	NA
WP_067554248.1\|2304544_2305432_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.1e-44	36.4
WP_067554245.1\|2305428_2305728_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011391

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection