CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP014938	Rothia mucilaginosa strain NUM-Rm6536	12 crisprs	csb3,cas3,csb2gr5,csb1gr7,cas2,cas1,DinG,c2c9_V-U4,csa3,DEDDh,WYL	1	14	0	0

1. NZ_AP014938

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP014938_1

• CRISPR_ID: NZ_AP014938_1
• CRISPR_location: 23568-23651
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_AP014938_1

Consensus_repeat	Method
CTCCCCCGCGAGTGTTGTCCGGTAC	CRISPRCasFinder

spacers of NZ_AP014938_1

>1.1|23593|34|NZ_AP014938|CRISPRCasFinder
GCACTTTCCAAACAACTAACCCACGGAAGCCTCG

CRISPR arrays and Neighbor proteins around NZ_AP014938_1

CRISPR arrays

The CRISPR arrays of NZ_AP014938_1

>merge|NZ_AP014938|1|23568-23651|CRISPRCasFinder
CTCCCCCGCGAGTGTTGTCCGGTACGCACTTTCCAAACAACTAACCCACGGAAGCCTCGCTCCCCCGCGAGTGTTGTCCGGTAC

>NZ_AP014938|1|1|23568-23651|CRISPRCasFinder
CTCCCCCGCGAGTGTTGTCCGGTAC	GCACTTTCCAAACAACTAACCCACGGAAGCCTCG
CTCCCCCGCGAGTGTTGTCCGGTAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014938.1|WP_005506250.1|35015_35258_-|acyl-carrier-protein	unknown	unknown	gnl|CDD|179197
NZ_AP014938.1|WP_060823551.1|36601_37501_-|ACP-S-malonyltransferase	unknown	unknown	gnl|CDD|223408
NZ_AP014938.1|WP_060823543.1|18818_19928_-|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl|CDD|236686
NZ_AP014938.1|WP_060823546.1|23677_24493_-|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl|CDD|234710
NZ_AP014938.1|WP_145974249.1|29295_30540_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl|CDD|273015
NZ_AP014938.1|WP_060823537.1|12008_12515_+|hotdog-fold-thioesterase	unknown	unknown	gnl|CDD|161843
NZ_AP014938.1|WP_145974224.1|26943_27762_-|GTP-cyclohydrolase-II	unknown	unknown	gnl|CDD|238348
NZ_AP014938.1|WP_060823547.1|24507_26118_-|anthranilate-synthase-component-I	unknown	unknown	gnl|CDD|184152
NZ_AP014938.1|WP_060823541.1|16738_17650_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823540.1|15234_16284_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823542.1|17858_18755_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823550.1|35460_36486_-|ketoacyl-ACP-synthase-III	unknown	unknown	gnl|CDD|236475
NZ_AP014938.1|WP_060823539.1|14204_15107_+|hypothetical-protein	unknown	unknown	gnl|CDD|375902
NZ_AP014938.1|WP_060823548.1|27770_29054_-|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl|CDD|376420
NZ_AP014938.1|WP_060823545.1|21578_22997_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823544.1|20109_21507_+|MFS-transporter	unknown	unknown	gnl|CDD|340883
NZ_AP014938.1|WP_060823549.1|33462_34734_-|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl|CDD|274452
NZ_AP014938.1|WP_060823538.1|12613_12862_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_005509159.1|13155_13767_-|response-regulator	unknown	unknown	gnl|CDD|226230
NZ_AP014938.1|WP_005506244.1|26412_26889_-|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl|CDD|234606

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP014938.1|WP_060823551.1|36601_37501_-|ACP-S-malonyltransferase	gnl|CDD|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.57963e-75
NZ_AP014938.1|WP_060823548.1|27770_29054_-|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl|CDD|376420	pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase. 3,4-Dihydroxy-2-butanone 4-phosphate is biosynthesized from ribulose 5-phosphate and serves as the biosynthetic precursor for the xylene ring of riboflavin. Sometimes found as a bifunctional enzyme with pfam00925.	1.11039e-112
NZ_AP014938.1|WP_060823546.1|23677_24493_-|indole-3-glycerol-phosphate-synthase-TrpC	gnl|CDD|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	3.75049e-125
NZ_AP014938.1|WP_060823547.1|24507_26118_-|anthranilate-synthase-component-I	gnl|CDD|184152	PRK13571, PRK13571, anthranilate synthase component I; Provisional.	0
NZ_AP014938.1|WP_060823537.1|12008_12515_+|hotdog-fold-thioesterase	gnl|CDD|161843	TIGR00369, Putative_esterase, uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.	5.6276e-26
NZ_AP014938.1|WP_145974224.1|26943_27762_-|GTP-cyclohydrolase-II	gnl|CDD|238348	cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (FAPy), an activity that has otherwise been reported for unrelated GTP cyclohydrolases III.	1.63965e-88
NZ_AP014938.1|WP_060823550.1|35460_36486_-|ketoacyl-ACP-synthase-III	gnl|CDD|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	2.09401e-139
NZ_AP014938.1|WP_060823539.1|14204_15107_+|hypothetical-protein	gnl|CDD|375902	pfam18476, PIN_8, PIN like domain. This is a domain of unknown function, suggested to be a member of PIN like domains clan.	3.11158e-14
NZ_AP014938.1|WP_005506250.1|35015_35258_-|acyl-carrier-protein	gnl|CDD|179197	PRK00982, acpP, acyl carrier protein; Provisional.	1.02718e-23
NZ_AP014938.1|WP_145974249.1|29295_30540_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl|CDD|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	7.15612e-74
NZ_AP014938.1|WP_060823544.1|20109_21507_+|MFS-transporter	gnl|CDD|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.70603e-57
NZ_AP014938.1|WP_060823549.1|33462_34734_-|beta-ketoacyl-ACP-synthase-II	gnl|CDD|274452	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. 3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NZ_AP014938.1|WP_060823543.1|18818_19928_-|signal-recognition-particle-docking-protein-FtsY	gnl|CDD|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	1.94998e-157
NZ_AP014938.1|WP_005509159.1|13155_13767_-|response-regulator	gnl|CDD|226230	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms].	3.63061e-56
NZ_AP014938.1|WP_005506244.1|26412_26889_-|6,7-dimethyl-8-ribityllumazine-synthase	gnl|CDD|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	1.73971e-63

Protein sequences

>NZ_AP014938.1|WP_060823545.1|21578_22997_-|hypothetical-protein
MSFIERDLSSGSSTGPAPTLKASRPSAETRVRNTAPSSPQKLAAYRTWMPALIIWALACATHLATFAYSLAEDQRNPLSNENKNHQGFLSYLNIWDAGWYRDIYKEWYPTELPMRADGSVSFNSWAFMPLHSMISGKVAEIFGIEYRLAAVGVSLAAGLALAVVLYRLFIGSLNWRDRGTFDTRALVGDESRNRIALWALAVYAFSPASPIFVTGYAEALSTLLLALSVWCVVRGRYILLLPVALMTALSRPLGVPLGAFVGLWWLWCTVSDYLARRADEPSQSALSDAWVAFRGRFGQLLGALLVCGFAFVHPLHAALRTGRMDAYLATELGWSFRKVEDGHQYFSQWVHQFNLYFVGSVPAIIMWAGLVLLILSFYWWMSQKFTRTLLHPALWLWTACYAGYLFIFWLPTSSTVRILLPVFPLSLLIAAYLPKSRMYRFLLVLAGLLGSALWMRLLWGGPDVIGPVWLLP
>NZ_AP014938.1|WP_060823544.1|20109_21507_+|MFS-transporter
MRNPATTPPVFDPRTIDPNRVPTGLKVLIVASFMIAVGFGLVAPVLPNYAQNFNATVTMATMVVSALAITRLIFAPSAGQLITRWGERPVYTIGMLIVSITSFMIAFAWDYWVLLASRAVAGIGSVMFTVSAMGLLVRLSPAHMRGRISGYYATAFLLGNLLGPVIASALAPFGMRAPFIVYGFSLLAAGLIVWFLMPSQAALEAERDAIMEAAALAEGKGTGVLPSAAPSPAGASGQGAKPGSSSGKSDLPAMKVRDALKFSNYRSALVSNWAIGWSVFGVQSSIIPLAAAYLATGGDMSNSVAGTLLASLAMATNSFGNALTQTFSGRFSDRFGRRVMAFSGLLLAGSAVTFMGFAPVAWVFVSLTACLGIGAAFMGPSIQAAVSDVIGTRRSGGQVLAVYQMFSDFGMILGPLVAGLIADAWGFVPAFIISGLLLVAAAFTWAPFRKARWPKDIADADYTGR
>NZ_AP014938.1|WP_060823543.1|18818_19928_-|signal-recognition-particle-docking-protein-FtsY
MMIICAIVLGVLVIAGVLFAVLRRPKKTANLQSLRQEAAEASGGSAEKPESSAPRAIELDMPDPSAGRLVRLRARLARSNNMLGKGLLALLSRDRIDQDVWDEVEETLLLADLGSEPTTRLVEALQQRVRVEGTSNPAAVKKMLREELVKIVRPDMDRELKTAGSDGNPGVVLVVGVNGVGKTTTVGKIARVMVADGQTLLLGAADTFRAAASEQLTTWGDRVGVKTVRSEKEGADPASVAFDAVKAGKEQGVDTVLVDTAGRLQNKSGLMDQLGKIKRVIEKEAPVTEVLLVIDATTGQNGMVQAKVFGDIVDVTGIVLTKLDGTAKGGIVVAIQEELGVPVKLIGLGEGPDDLAPFDPEAFVDALLD
>NZ_AP014938.1|WP_060823542.1|17858_18755_+|hypothetical-protein
MIRTRTELITSAAHTRITLSHALNRGELTRISKGHLLPTQTWNNLHPNDRHYVCILAHLNEYPTNILASQSAAIAWGISSLTPPCHIQVRGTGGGRRENIQRIQDTLTADSPIVYTPEGIPTVTPLTAITTCVKTLPFRDGLILAESALQRFAQEPDMLTYEELKKELSSASGRGCRTARLVGHELSPHSESVAETCMRLLLDDQGIHYKQQETIIYEGHTSRVDFLLHTTSIHGRPVVLEVDGNIKYNDKEDLVREKTRQDRLLHAGYAVVRISAKDAIYRPRRALQVLRAAGVPQI
>NZ_AP014938.1|WP_060823541.1|16738_17650_+|hypothetical-protein
MEFINKYAPILIPLLTAIAGLLTAWFKTRAARAEAKKAEAGTSTGGTTQKLSVGTINGNGNRVQNTHQQVGNGSAAISGDGNRTTIDNSQHTHNHAPSKKGHESDDDTWGNIAIAFGGGPLIMGAFLISWPTISWTLVAYWVTCLALIGWQVKLLNAKSTSSSAHAILNVLYPASLLAIVGGTWFTLIGAGKYNMATIYTTISGHYESHPQGGMAMRFIEAVTASYGAAGFTLIMLNLLTVVFMAAALLQCFKYSVKALNALYRGNLIRPSVQEASMSFFLAVVSLVACQPALTEHLIAQINK
>NZ_AP014938.1|WP_060823540.1|15234_16284_-|hypothetical-protein
MAAPNLPGTLPTPNYRPTYRSNGACEDLVQLVAPYSLSRAQLAEATGIADEATVNSWVEQCRPDLAADAPAPLEPVLRYLDETYLPDPANWPGDNAYDEFVLENIAARMLARVVAESFGADRSGNYRDLLALIATLVLIARCWAGTDEAFLTLLNAEPTAEAEEYLQEATANAPESLYPLLTELLLPALREARGIFIAADAHLLTGYALAAGYFAGEHPYETLNGIHVSLADADRTLPDDELMTRVEDVLKANFQAARSEVGAADENQEPHHVTLPGNRDGYETAAHLIAALPQAHDVIAFSTPPGEGTNALADDRRAAFTLYLCYLLLGDDDSLEQHAAELYRASREG
>NZ_AP014938.1|WP_060823539.1|14204_15107_+|hypothetical-protein
MSITRQARTLYSDFVEYKELDRAPLTSIHPGILVAFDSTALACLYNYPAHISDEILRVYSQLRGHAFLPHQALKEFWAALDGTSPVPAAADRVRSALASFKETLPEERNSPWSALRSVAHQLDHSIAQIMRILEPTTDTGSINVARREDDTILPRLNRIFTGHVGAAPSPERHEQQCREALEQGHPLLANASFDADFALWNQCLTEATTRVKGTDCVFVTGGVRDTWLRNGPQVRAASGGKPVRQLANRQLLREYAQATGGGVFRIYTVEEILRLASNQYGVTVSDPTYSAIRAEQPVAV
>NZ_AP014938.1|WP_005509159.1|13155_13767_-|response-regulator
MSELTTQNQAEEQGPARTVVVAEDEALIRLDIVEILKDQGFDVVAETDNGKTAVELAQKHRPDLVLMDVKMPIMDGITAAEEIAKEQIAPVVLLTAFSQKELVDRAVEAGAMAYVVKPFSPNDLVPAIEVAISRYEQIRALEKEVGTIRDQFETRKLVDRAKSLLITKMNLTEPEAFRWIQKTSMDRRLSMREVSDTIIKQLS
>NZ_AP014938.1|WP_060823538.1|12613_12862_+|hypothetical-protein
MARERTPYFKRYPKIVRAKRIVLPIAIGVMLVCLVTAINNPGSFWWLGVMLGTGGMLWAGSPTDRPISGPNNDEDDFNRYLR
>NZ_AP014938.1|WP_060823537.1|12008_12515_+|hotdog-fold-thioesterase
MTENNTQHPPVRAAAPTTLTTEEIKAQLTESGIPEHLHPYFPRGLGELIPAMGIKFQELTAERTVATMPVAGNTQPIGLLHGGANVVLAETLGSLSAGVHGGENLVAVGVDINATHVRPAVSGLVTATCTAVKLGRTLCIHTIDIVDERGRTTCTARITNMLIPRPTA
>NZ_AP014938.1|WP_060823546.1|23677_24493_-|indole-3-glycerol-phosphate-synthase-TrpC
MSTVLDEIIVGVREDLAARVQQVPLEEMKKRALTAAPARDALASLRGEVPGGGNGTTARIISEVKRSSPSKGALGEIPDPAALAARYEAGGAAAISVLTEQRRFNGSLADLDAVRAAVNIPVLRKDFTVDEYQIWEARAHGADLVLLIVAALDEQTLREFLELTESLGMNALVETHTPEEIEVAQRIGAKIVGINVRNLKTLEVNNEHYASLAAHLPNSVIKVAESGVASIEDVRAYAGAGADAVLIGEALVRSGDPEGTVREFSKVPVTR
>NZ_AP014938.1|WP_060823547.1|24507_26118_-|anthranilate-synthase-component-I
MQDLGTITPSLEEFRARAASTRVIPVHIKILADSLTPIGIYRSLVLQNDQGEPVEAAHGTFLLESAKISAEGESAAWDRYSFIGASSRSTLTTVDGAVHWQGRTPAGAPVDGDPVEAIAKTLQMLYTEPDPTLPPLTSGLVGYLGWDVVRHWEHLPYPPADDVNLPEFALNMVSDMAIHDNKDGTVLLVANAINFNGTSENVDGAYEDAVARLHSMLRRLQRGAATTTSILSGVADVDRKVREDVTLTWSEQGFKDAIDRSKKNIIDGDVFQIVLSRRFEAETNAKALDVYRVLRQSNPSPYMYLFNFEDSNGTPFHIVGSSPEALVTLKDGIASTHPIAGSRPRGATREEDLALAEELLADQKERSEHLMLVDLARNDLSRIAKPGTVSVDQFMIIERFSHIMHISSAVSAELDPQFSAYDVLRVAFPAGTLSGAPKPRAMQLIDEYEPTRRGVYGGVCGYFDFAGNMDMAIAIRTAVLKEGTAYVQAGAGLVMDSNPDSETLETVNKSAAPLRAVLTASGLAPLDADAAVNATK
>NZ_AP014938.1|WP_005506244.1|26412_26889_-|6,7-dimethyl-8-ribityllumazine-synthase
MSGVGAADTTLNPEDYKGFKLAIVAASWHTQVMDGLIDGAQRAARDAGIEPTLVRVPGTFELPVAATRLAEKFDAIVALGVVIRGGTPHFDYVCQGATNGLTDVSVLTGRPIGFGVLTCDNEQQALDRAGLEGSNEDKGYEATAAALQTAATLKQFSN
>NZ_AP014938.1|WP_145974224.1|26943_27762_-|GTP-cyclohydrolase-II
MSETPNTQATPGTSASGTPAAVTLAEPGTLVEPIEAQAEELSAESLRIASQLAEGYRVSPLDMVPNPSPLLVESTEEVAVPTPQGLFGLRAWRFADGAEHISARALDRDGTPVPAEDGGAPAVRIHSECATGDIFGSFRCDCGPQLENGLRIISRTGGYLIYVRNHEGRGIGLVNKLRAYALQDAGLDTLDANLALGLDGDMRDYSQAALILQELGVNELRLVTNNPAKQEALESLGLQVTEIIPDEIPARVENAHYLQTKRERMRHVLKSA
>NZ_AP014938.1|WP_060823548.1|27770_29054_-|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MFTGIIGALGTVESITPIEGSDAAYLTLSAGDIVADLEHGGSLAVNGVCLTAIDLDQLQPGQFRAYAMGETLRRTNLGNLNPGDTVNLERCLPAGGRLDGHVVQGHVDAVGTLASVTAHEAWSTLRFNLPTELAPLLAEKGSIAVSGVSLTVTAVSEPGETPAWFEVGLIPETLKATNLGALKVGDSVNLETDALAKYVQRLTAFAGVSQASSSEQVAPRRADAASVLDSVQTAVDAIAAGRAVVVVDDEDRENEGDIIFAAEHATPELMGFMIRYTSGVVCAPLSNKRADEMNLPPMVTNNEDPKGTAYTVSCDAASGVSTGISAADRARTVQILADASSTPADITRPGHIFPLRAVDGGVAERPGHTEAAVELSLAAGLSGVGVIAEVVHDDGSMMRFDALRAFATEHNLPMISIEDLIKYVAKA
>NZ_AP014938.1|WP_145974249.1|29295_30540_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MPLPHNDLDYSAAEYGHLAGLPAARTLQLPDPEQTLSHADAMTLALQAARQGIRGANPLVGAVITDRHGHLLHVGYHRGAGTPHAEADALAAARAAGTDLTGARMYVSLEPCNHTGRTGPCSHAVAEAGISELYYAYSDDTENAAGGAAYLRSQGVTVHAMEEFANASYLLNERWFIAAAERRPFITAKSASTLDGFIAAADGTSKWITGPAARIDGHLIRHRADAVMIGTRTTLMDDPTLDARDANGERFEKQPLRVVMGKTEITENYRIRGLNPPEGVEADPQNFLQVFTHDPRELLDELYARGVRHLMIEGGPGMVGLFAGEDLIDEMVWYRAPMIMGQGKSAVYRLLVDTLAQAPRLQLDDLGMFPAVRVLGNDTATHLVPAPRGTAEEPGERRTLPKLDACHAPEPRLD
>NZ_AP014938.1|WP_060823549.1|33462_34734_-|beta-ketoacyl-ACP-synthase-II
MSRKVLVTGLGATTPIGGDVPTTWENATKGVSGVSTLDHPWVKEYDLPVYIAGQLAVPALESGRLTKVEAKRLDPSGQLALIAAREAWEDAGFTGPDAESAEEVDPERTGVAFGTGIGGVWTLLDAWDTLREKGPRRVLPMTVPMLMPNGNAAAVSMNLKARAAAQTVVSACASSTEAMQLGAEMIRSGKADVVIVGGAEAAIHPLPMAAFAKMQALSSRNDEPEKASRPYDVDRDGFVMGEGAAALILESEEHAKARGARVYAELAGTGVSADSYHITAPDPAALGATRALREALEDGNIDPKTVVHINAHATSTPAGDLPEATAMHETFGEHTKNIAVSATKSMTGHLLGGAGALEAVLTVLALYHRTAPCTINLDNKDPQIDLDVVTEARELPAGEIVALSNSFGFGGHNAVVAFRSVEG
>NZ_AP014938.1|WP_005506250.1|35015_35258_-|acyl-carrier-protein
MANKEEILAGLAEIVNEETGVEVEDVQLDKSFTEDLDIDSISMMTIVVNAEEKFEVTIPDEEVQNLKTVGDAVEFIANAA
>NZ_AP014938.1|WP_060823550.1|35460_36486_-|ketoacyl-ACP-synthase-III
MTTLKQYEINRYSRILGYGAARGDVIVPNDDIVEAINSSDEWIKQRTGIATRHRASENQSVTDLAIEAAKDALEASGVAGEDIEAVIISTISHPYATPSLATLVADAIGSKCPAYDISAACAGFCYGIAQADALVRAGTAKHVLVIGVEKLSDFIDNTERTISFLLGDGAGAAVVGVSDEPGIAPTVWGSDGSRWGTVGMTHSLLDIRNRDFVANPVQEGEKIWPTLRQDGPSVFRWAVWEMAKVAKQALETAGITPDELGALIPHQANARIIDQMVKTLKLPDTVAVARDIVDAGNTSAASVPLAAHRLLKENPELSGKFALQIGFGAGLAFAAQVVVLP
>NZ_AP014938.1|WP_060823551.1|36601_37501_-|ACP-S-malonyltransferase
MRALVCPGQGSQKKGFLSPWLEIEGVREHLERLSEAAGIDLIHYGTEAEEETIKDTAIAQPLIVAAGIVTGRLALRELDGEELIFAGHSVGEITAAALAGVLSDEDAMRFVRVRANGMAEAAAASPTGMAAVLGGVEENVREAIDAAGLVAANSNGGGQIVAAGPIPAIEAFAANPPARTRVIPLKVAGAFHTEAMAPAVPALEEFAASLQVSDPTSALLTNRDGSAVASGEEFVKTLVSQVTSPVRWDLCMATLLEREVAGIIEVAPAGTLVGLAKRAMRGVPGTSINTPEDLASLKG

Crispr_ID: NZ_AP014938_2

• CRISPR_ID: NZ_AP014938_2
• CRISPR_location: 108422-108659
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 3 spacers
• Cas_protein_info: csb1gr7,csb2gr5,cas3,csb3,cas2,cas1

Consensus repeat of NZ_AP014938_2

Consensus_repeat	Method
CCTCAATGAAAGTCCCCGCCCGAAG	CRISPRCasFinder
CCTCAATGAAAGTCCCCACCCGAAAGCGGAGAAAT	PILER-CR

spacers of NZ_AP014938_2

>2.1|108447|46|NZ_AP014938|CRISPRCasFinder
GCGGAGAAATGCCGGAACATTGCCCAGCGGCTCAGCGGTTTTATCG
>2.2|108518|45|NZ_AP014938|CRISPRCasFinder
AGAGAACATCTCATAATATGCACCTGACTTATTGAATGTATGAGT
>2.3|108588|46|NZ_AP014938|CRISPRCasFinder
GCGGGGAAATGGGCTTGATTTGAGCTCAGAGACCCTTGATGGCTGG
>2.4|108464|36|NZ_AP014938|PILER-CR
GCCGGAACATTGCCCAGCGGCTCAGCGGTTTTATCG
>2.5|108535|54|NZ_AP014938|PILER-CR
TCCACCAGGAGAGAACATCTCATAATATGCACCTGACTTATTGAATGTATGAGT

CRISPR arrays and Neighbor proteins around NZ_AP014938_2

CRISPR arrays

The CRISPR arrays of NZ_AP014938_2

>merge|NZ_AP014938|2|108422-108659|CRISPRCasFinder,PILER-CR
TTCCTTCGAAAGTCCCCGCCCGAAGGCGGAGAAATGCCGGAACATTGCCCAGCGGCTCAGCGGTTTTATCGCCTCAATGAAAGCCCCTCCACCAGGAGAGAACATCTCATAATATGCACCTGACTTATTGAATGTATGAGTCCTCAATGAAAGTCCCCACCCGAAAGCGGGGAAATGGGCTTGATTTGAGCTCAGAGACCCTTGATGGCTGGCCTCAATGAAAGTCCCCGCCCGAAAG

>NZ_AP014938|2|2|108422-108659|CRISPRCasFinder
TTCCTTCGAAAGTCCCCGCCCGAAG	GCGGAGAAATGCCGGAACATTGCCCAGCGGCTCAGCGGTTTTATCG
CCTCAATGAAAGCCCCTCCACCAGG	AGAGAACATCTCATAATATGCACCTGACTTATTGAATGTATGAGT
CCTCAATGAAAGTCCCCACCCGAAA	GCGGGGAAATGGGCTTGATTTGAGCTCAGAGACCCTTGATGGCTGG
CCTCAATGAAAGTCCCCGCCCGAAAG

>NZ_AP014938|2|1|108429-108597|PILER-CR
GAAAGTCCCCGCCCGAAGGCGGAGAAATGCCGGAA	CATTGCCCAGCGGCTCAGCGGTTTTATCGCCTCAAT
GAAAGCCCCTCCACCAGGAGAGAACATCTCATAAT	ATGCACCTGACTTATTGAATGTATGAGTCCTCAATGAAAGTCCCCACCCGAAAG
CGGGGAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl|CDD|377432
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl|CDD|237976
NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl|CDD|274235
NZ_AP014938.1|WP_060823585.1|90011_90863_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	unknown	unknown	gnl|CDD|237001
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	unknown	unknown	gnl|CDD|271320
NZ_AP014938.1|WP_060823586.1|91563_93759_-|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl|CDD|271320
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl|CDD|378223
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl|CDD|376583
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	unknown	unknown	gnl|CDD|224402
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	unknown	unknown	gnl|CDD|236090
NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl|CDD|274005
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	unknown	unknown	gnl|CDD|237000
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	unknown	unknown	gnl|CDD|235906
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	gnl|CDD|187733

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	7.6e-89	292.6	0.0
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	6.1e-17	56.9	0.0
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	4.6e-21	69.6	0.0
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	1.9e-88	291.9	1.5
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	3.6e-80	265.0	8.6
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	2.5e-146	481.9	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	gnl|CDD|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	1.03457e-10
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	gnl|CDD|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	2.01789e-68
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	gnl|CDD|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0.00203925
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.62042e-84
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	gnl|CDD|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	1.98377e-64
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.62642e-18
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	gnl|CDD|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	1.41217e-14
NZ_AP014938.1|WP_060823586.1|91563_93759_-|LPXTG-cell-wall-anchor-domain-containing-protein	gnl|CDD|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	7.28839e-14
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.08474e-104
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	gnl|CDD|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.1891e-25
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl|CDD|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	7.1838e-77
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000981202
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl|CDD|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	4.70631e-70
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	gnl|CDD|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	0.00135953
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	gnl|CDD|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00420809
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	gnl|CDD|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	2.98519e-167

Protein sequences

>NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein
MLTIGADPISQATSMATGVIVNLIAFVLIEMVLKPILARVGYLPEPGIPRNAHSEEMLGDGAAISALPLNIGEESAHIHVSVMSHGGTVITVLTPHSHVTLHVSGDVQKPPTTTESQ
>NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7
MSQTTITLADLIENVKLGGGSVITSITELEPAAGPHASVAPAKFVDGKGNDSKSVFAYETRYIVEEVQNPDESENEDESKEPEKDVKGQPQKVVLIDSKQSELNRAEAAIEQGRQYGDEAVVKIPRAVVTYQTENGPVEYSDMELSHRIFDGHFRAGTIDDKLITENDQYRALRNSTPADMSALLNTAPAALLFGAWDSTRKSHQVRLRSALVGEIIGVLADQEPGAEHRQARRGGARVDAVAASVKLAPKDMESLVNDQEAELSPGNVGARRNDIKKAKADARISASTLGLGSIPPTLEETGAVACHRIIRSWVLSLATLRQLRFGQDETKNVAARALLAALGLNAIARAERELYIRANCDLIESAAPVVTLDQRFGKKKTFAPLTVEHTDQLLLEAIENAKKAGVADWNGQTFNVEGNPIIIKNATAEDAE
>NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MTNLGILARFPLGVYQGHKADGSPDAFPDPARLQAALLSAAAQGPHAIIENGQLAPSDESLKALKWLEENPPTGLQLPDMCPVYRSPNKMSRFMYREVAYSEKDGRQTERRAVSDGWAVSDTIGWQYDKVPADIAETITQLCGEVPSLGEASSLTALYTGDVEPTHTIDTKSGPFEAGGMPVRVPVPGRVDALMRAHAEAYPVKVPTKAGDKTAASDTMRPSPVPTAGLGSIKYQPVEAETSTSPWEYLWLLEVDGEELKSEQYVKACSLLHKALVAAAGFGAPSLITGRYPKGHKPANSLALQYLPARYLPDYLRREVKSKGVLLVLVPASAPTDEAVELGIALRSVETLYAQDFPRLTVKLRQKRLPAQGFWDAPKTGYKRLWRTLSAAVPESRVFNRPKKTETKAWTFADAALLSMAYVWRDSFEAPEAETSRERIRSLRDQVAKKAEAKVLEAHRVTQNPAAYAYKLPRTLPAEPWRGVVDLGNLATDTTLVAIGQSRHMGGGLLVPFDVPTEEYDRRKKEEKHD
>NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MTSPATALPSITRDEFGDFFAALNGGYDPFSWQEEVLDHICEHGVWPERINAPTGSGKSSVVDIHLFANALAAVGAAPRVPRRLCVTVGRRALVDSQATRADKILGRMGKALTDGSGEPDILRRVAEALHSFQTRNDEKGSKPFETGHIRGELSNRNLPVTDISACAIIAATPDMYGSRALFRGYGSTKAARPRETALLTMDTVMVLDEAHMNRQLLHTTQRIAELQKYEADLGVPTLQVVETTATPSTEDSESTTLGVDIEALDTPNDKELHRRVYSHKELVLHPIDKWDGKPGNSPTVNAAVDAIMERLAHREAGESSKKAYTVGCIVNHVRTAISIKEALAKNKALGKDEVQLLVGRMRPYDLKNLQAEHSGLFITEGDESVKVVVATQTLEVGIDVDFADLVTELAPASSLAQRFGRVNRLGHRTDSKVVVIEPASSDLVKKDAPPYKAVDLSNAYAWLEALNGAENPSVNPAAMVKNPPVQSSPERLLYQRPEWPDLLEFSRTDENPYDEPDLDLWLHDSLDAETAMGGVIVRDNLPSNTSAAMEILKTSYFAPSDRETFPANLKILQEILDYQDEHGVKPRKFLYRQGEISLWQDADHGAESSQSLAPGDVLLLDMGSVPFTNQGIAVTQRELPSKKDELKAVPFLDDAELYVAELYVYEKCADREKHFREYLGLSPEEAAELLDSQSTDGKKMIASELSTEAEGGQEVIAWYAEVTGKESVEGSDIAQELVLAAPVLLDDHQNDVAERTRQLAENLGLAPEFSEALELAAKYHDEGKRDLRFQQMLGADPDAEALAKSGHRSVAEAYRARSRSALPRGWRHEQLSALMVAASPEKVGEHRDLVLRIIGCSHGHGRFSFAHDAGFLLKEGYLPEGTDYEALKEQATRLFNVGYWDNLMEQTSRTYGPYATAYLEAVERAADAQISREGH
>NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase
MAMLTIAGDYTSALTHFALYGLSLMVEQKHPGAVTVGWSQEGQPRAQMHAEGVSEEEIAECVHSYVSSLAAEDSWVNVDQSYGAGKEAAVFSPFSPRFRGIDAEKYPDDWASHQKTRQAHLDALMERDDLLSLLWISGLGEPSYWRFEAKAPRPDHGASRWEMKTRNKGQEFVKDRLRLMCADLATWEPSAMLSGITGQTLYDSLDKKPDSRTGTGFTVPQPTDTALAFCALVGIANFPVIHQVHRIGVTPGAYPYNALHPRLMVLPVSSGKVTPARLRTVLRSHPYRRVVDEVGKAMERGSLSSDIFVSELVDEKAILREKGVQAFVAFPIVKVGSDSAPERQVLKGSAIPMG
>NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter
MEAKEFSEKALLFFAKSKYADLFGVALVIAIAIASGYLSTNLAKYVDWGPITSFIPLGVISVINVGISMMSTRLTGRLSNVGNVLGIINTALSGAIDYILGNKAAIITYPVTFIVYTFAIRRWQNSERGKALEPPTGTKGQLIIGGIVAGSFAFSLVTNYIGYGGKTSFLFWITTVVFGLSLSANILNALKLTMQWQFWFLYNTVQCIKALTQGNFANVGKYIFYIINSVAALLLWTRNGTASKGAVAAVA
>NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein
MPLLTHRLSRRFFVKGASAAAAAGALTLQAQAAQADEAPANLAPATEETKGPRLVIQRATITETGMTVNYTAHGLREFLTEGTTLTVRHGYVRNDSFETLRSWPLTPEFDGDADSFSGSDQFPIELMQGEGVDHALQLDICSDPWGQEITHQIAARIPLAETKILKTSFEDVPDNHPFAEDIRMANQKKWLMPNPQTGAFEPDRPVTREELIALLNHAAGHAGVSENSDVAPFADAAGRPTANALHWARDRKITEPLTGGDKIDPTAPVSHEELAAVLFQYNAEVQLTEMKEGTGSRFRDVLGAGTLHRYVAWAGANDIVLDASGVFNPTAPTTRAELARFIRRYKLQNLLFTDFSYVS
>NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase
MNLASSKAFKGLAVGSLALAISGVAAIPASFAAESTRAASQSSEARTITDKAMAKITQGLPGQFQVAYSKKTNKIWVAGTADRDEHVSTIARIDANSLKIEAVAELPIIKGDSGYSYEGAYGITVDDEEGTVWVTSTRDNSVAVYDQATMKQLWTNAGLSKDDPNWIEHPREVRVDHESGKAFVTGRFFVSAIDLKTKKVEKIQLEGAPDGGTRYISMNILVDGGKLYVPERTGGKLFVIDTKTFKVEKTISVKGDKDGEVRPSDVAIDHSQNEIYVSSQGVKGENSGVSVYDATTYEFKKFIPFGTQALSLDNDEANDLVYVSDFGTGKVGVIDGGAADKLIAEVTMNGGKANDLVVLPNGSVVAVDKQAGATATVPYVLDGTTGTVSTSNKVTSKPSKDKQGNEVPAKTSDIQANSILKFKVTATAGDNSEVKQVTPETREFQGYPATATKTKATDSTAPSTEAHRTVDANGSVANIIQGLPGQFQVGYSKKNHKLFVPTVGARGGLASSLARVDADTLQTEAFAELPVKKNDKGQYGYTSAYGVTVDDVDGTVWVTNTIDNSVAVYDQQTLKLIWTNEGVKEGDPNWIEHPRSVLVDHESGKAFVTGRFFVSAIDLKTKQVEKIQLEGAPDGGTRYVSMNLFLDGGKLYVPERTGGKLFVVDTKTFKVEKTIQTQGEDSTVEVRPSDVAVDHSLNEIYVSSQGVKGVNSGISVYDLTTGEFKKFVKFGTQALALEHDEDRDLVYVTDFGTGKVAVFDGRADEVIGEVEMNGAAANDVTLLKDGSVLVLDKKDRDEKVTLPYVLNGTTGEITTASEYTTLPTKDRQGNDVPASVQQLKANSILKFKVGVKDTDASAAPVGITPTSLQFAGYPTVTGVKAEESKPADPKPADPKPADPKPEDKKAEDKKAEDAKSEDKKSDAKSENTAEAKDQTSKDQASQSDSKSDAKTGAQDSKSAPDAVKADKSGSAVKNGGSDSSTGGSSVAKSEAGSSQAGSSRSALANTGANAVMPLVAFASVALIAGAALVMRRRKA
>NZ_AP014938.1|WP_060823586.1|91563_93759_-|LPXTG-cell-wall-anchor-domain-containing-protein
MNLTPSSGKALKGLAVGSLALAISGAAMIPASFAAPNNAHQTAASSASAPSTASLSRVVDTSASVAQITQGLPGQYQVAYSKATNKIWMVGVGGNSNLASTIARVNADTLQIEEVAALPFELDKNGEFGYISAYGITVDDVSGTVWVTNTTDNSLSVFDQNTMEQVWTNHGISESDPNWIEHPRSVLVDHNSGKVFVTGRYYVSAIDMKTFEVTKLQLEGTPNGGTRYVGMNMTVDGDKLYVPERTGGKVFVINTHTFKTEQVIQTRGENSSVEVRPSDVTIDHSENEIYVSSQGVNGVNSGISVYDLTTGAFKKFVKFGTQALSMENDEARDLVYVTDFGTGKIAIFDAKTDRVIGEVEMNGGKANDLTIAEDGSVIAVDKQDIANTTAAVPYVLNAKTGDGSLTDTYTSKATVDRNGKTVPSSQQKLVPNSIVKFYAEVSEGEFTSTATINPAKVPFQGYPKQATAVLIDPTLNFAEGTVDITRPYTFHVSGYDYDKPPAEGLRLFLVKEGEWSMGYDKLTDSELANIQKVSTIVPASAFVYNSRTGKYSFEATLRVPANTMQYSQGYLLGTVTAGSDVATNRNYDSAVSLIVNDAKDAGNADNRNEADEPAFPAAASASPSASASAVAEKPAAEQSKGEPSKAEEANDQLGTTAKTAPLKNSSSAKSESQPKSSGVDSQVSASATKSAPQSKGSLAKTGAQSVLSLAAVGAFALIAGAAVMVLRRRKA
>NZ_AP014938.1|WP_060823585.1|90011_90863_+|hypothetical-protein
MSTMYTRRTALTALGLGTAALLAACSSKSSSESSATASASATESSTASASATASVSPTAEATTTVEPGPSMKGEVVLADYSSTGTFEPGTKEHKAVNVAIPVEPAKLRENSVEGLHAFIAYWQATLNYLLLTGDGTRFTNIDHTGDYSTVAEFFQSMYASESGWVIGSERPMILSLTADRPTKDTRTGYYTWASEMVIDGAEGAGVYSKTNDRVQPLTEVFKYPGKPVAGQIVAHYQDGTWRMVRRAPGTASASPVPSLSPSASAEGAASAEATAASAEASAQ
>NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2
MRDDARRTLIAYDVPSDRRRAKLAKLILSYGDRIQYSVFIVDAAPAKVRRIKDEVQDLIDPDEDSVLFCDLGLLARLDEPTFSYIGRAREVTESDALIL
>NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1
MSTPYSAGDELPISLVMHTVYCPRRAWIESNGEKTDTSQMQEGQSAHKRVDDPKTSRGTQQRAVTISSTRLGLTGRCDALEPQEDGSTRIIEYKATPVRRNASVTPAHRVQLALQKICLEEAGETVSECAVHFTNHNKTVPVDISDEDIRTAEEYVHTTRALIDNPTAPQPLEDSPRCSWCSHISVCLPDESHGKENITRVVASNPDSQVAHLTTQGSRATVQQGRLIVQHLGETISSVPLERVHSLVVHGNIDVSSALLRELMWRNCTIIWCSSTGRVYGWSQPGTGPNGLARVQQHVLSAQGHLPIAAAMIASKISNQATLLRRNGHAADVCRTMRDIQKHTPQATSIPEMLGLEGEAASLYFGNFATMLKEDVLTELGWTWTGRQGRGANDPINILLNYAYGMLSSECIRAILTCGLDPHAGFLHSSSRNKPALALDLMEEFRAVIADSVVVSLINRKQVKASTFTAVGGSYRLTPEGRKTVIAAFEKRMATEITHPTYGYSVTWRRAIEVQARMLLGVINGTTREYTGVTVR
>NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE
MPTTTVHLTDRIPRVSADELLAGFRPSERFGEVSFDSYIPDPNQPSQAEAVQKLKDFGDKINGGGAGAGFFGRLFGGKKKDSTKAGLYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSSYKLVCIDEFELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALGEGRFAAEDFKREIQVLASQFEVHRVDGEDFRHRGLPAAPEPVADDAFDAKVEEVFGGQTVGVDNFADLVEHLAKVHPSRYRQLIDGLDGIAWRDVHPITEQSVALRFVVLADRLYDKDLPIVSSGVPFDKVFTEEMLAGGYQKKYFRAVSRLTALAREGMLGEEAER
>NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein
MDSTIFTRRTLLGSGALVGLGALLAACGQQANNEAAATASATPTETTSASAAASDATSASATPKPVVTRGYSGQSKAPDGEYRKADGYGPAQNVPKPRNEPAQYPETEEGLHHMMEDWVIAHNYAIQTGDCSYAFKYVTEDSEEYGFYVYIEELYDNGGWVINGLDSYQAESALIYDDSQKIYRMKVRRFWTTAMYVESNGKMTRKANTNTDDDSFYFLFNYSNGYWKITDTKYENDL
>NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein
MKKINSFSLTFCVALTLFTHNLHTLPSSGSECTTKNDKGHCIKTSKNKRYPESERSGDTSQRNTQNTVAVSSDPSASEASVAKMAQEWEKEHPEQLDGAKQQYLASSAEARKAGDAECYTKGDRRPGHYVIGSLPLGDEANRIPNHVGGRYCVPNDAKTLTSNDPAQPKGPSPEEMLQEIEDQFAKTDIQAPVLKQSYNLGTGLSEDNPNVYKGDQINFYVDAPTARWEGDLMIGHVEMESYPTQMTIQYGNGDEGSFYTMGKPVSRARGKESRKTATSYAYQRSGNFHAYATVSYSGRFRVNGGDWQALDVVLTKETVDPLLVRVWWTDVGRVAGDCSYDDTRWGCKNDPTMGKKDNPNPRLRKADIRTGQRWHLNDNGDGDTEYSLHRDWPDM
>NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein
MTSVFLTRRAVLSGGALLGMSALLAACGQQAANEASVSASSSATPSETASASATATESASASATPSPRVTRGYSGNSKAPDGEYRKADGYGPAQNVPEPRKEPAQYPETEDGIDHMMQDWLTAHNYAIQTGDCAPVFRYVEKTSKEYPFYEYIDDLYKRGGWVVDGLDAYRAEGDLIYDDQQKFYRMKVRRFWTTVMYVDSNGKITKQANTNKDDDKFNFFFSYSNGYWKIIGSGYSDTPENNEE
>NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein
MTSVFLTRRAMLSGGALLGLSALFAACGQQANNEAAATASAAPSETALASAAVSEAATSTPSPVITRGYSGGSKAPDGEYRKADGKGPAQNVPEPRKEPAQYPETEEGLMKMMQDWIVAHNYGIQTGDCSYAFKYVSEESEEYGFYKYIETLYKNGGWAVNSLDSYQSESTLFYDESQKIYRMKVHRIWSTEIYIESNGDITRRANTDTSDDTFYFLYTYSDGYWKIINSKYEHEL
>NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein
MTSVILTRRAMLSGGTLLGLGALFAACGQQASNEAAATASAVPSETTSASATASESPSASATPSTVRGYSGGSKAPDGEYRPADKYGPAQNVPKPSAPEEGYNEKSLEGMRKTMDAWILWGNYGTQTGNYSMAFKFMSPTFEDERKAYTGVEDLYKRGGWVIGGINHYLADGNPWSEDGETYFWKAYREWDYETYVESDGSWRKWSNDDKTDDTFKFELKHNGQKWEIMNYEPVDD
>NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase
MAKKTKGKKSGAATAAVALLTETNTPFQMREYEHVEGVTSFGEEAAKNLGASEEQVFKTLLIVHEKDFAVAIVPVSGKLNIKAAAAALGWKSASMCDPKVAERRTGYVVGGISPLGQKTPSPTLLDESAQLFDTIMVSGGKRGLDVELAPDDLLKLTNGKYADIRA
>NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MGNSLPGVGAIAKNWREVLKPEEYAVLREGGTERAFTGEYWNTHTEGVYSCRACGTELFRSDQKFDSHCGWPSFFAPLAEDRVRYLEDTTFGMRRVEVRCAACDSHLGHVFEGEGYPTPTDLRYCINSVCLTLTPAGEAQLGDTPVDEAESAE

Crispr_ID: NZ_AP014938_3

• CRISPR_ID: NZ_AP014938_3
• CRISPR_location: 108839-109379
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 7 spacers
• Cas_protein_info: csb1gr7,csb2gr5,cas3,csb3,cas2,cas1

Consensus repeat of NZ_AP014938_3

Consensus_repeat	Method
GCCTCAATGAAAGTCCCCNCCCGAAGGNGGNGAAAT	CRT
CCTCAATGAAAGTCCCCGCCCGAAG	CRISPRCasFinder

spacers of NZ_AP014938_3

>3.1|108875|37|NZ_AP014938|CRT
CGCGTCCAACGAGACAGCCTACTTCTTCGGCAGTCAG
>3.2|108948|36|NZ_AP014938|CRT
GCCGATCGCGTCGATAGCCTCCTTAGTCGTGCCACC
>3.3|109020|35|NZ_AP014938|CRT
ACGGCGTCTCGACGTTCATTGCTGGAGGTGTCCTT
>3.4|109091|35|NZ_AP014938|CRT
CTCAATCCCAGGAAGCCATAATCAGCCTCAACAGG
>3.5|109162|38|NZ_AP014938|CRT
CGCTTGCGCGGGTCGCGGTAGGGCAACGCGCATGAGAT
>3.6|109236|36|NZ_AP014938|CRT
TTTCGCTCACGCAGAGACTCGGGATAAGGCTATCGA
>3.7|109308|36|NZ_AP014938|CRT
CAGGAAGGCGTACACGAAATCGCCGGGCTCCTGCCA
>3.8|108865|48|NZ_AP014938|CRISPRCasFinder
GCAGAGAAATCGCGTCCAACGAGACAGCCTACTTCTTCGGCAGTCAGG
>3.9|108938|47|NZ_AP014938|CRISPRCasFinder
GACGGGAAATGCCGATCGCGTCGATAGCCTCCTTAGTCGTGCCACCG
>3.10|109010|46|NZ_AP014938|CRISPRCasFinder
GAGGAGAAATACGGCGTCTCGACGTTCATTGCTGGAGGTGTCCTTG
>3.11|109081|46|NZ_AP014938|CRISPRCasFinder
GCGGAGAAATCTCAATCCCAGGAAGCCATAATCAGCCTCAACAGGC
>3.12|109152|49|NZ_AP014938|CRISPRCasFinder
ACGGGGAAATCGCTTGCGCGGGTCGCGGTAGGGCAACGCGCATGAGATG
>3.13|109226|47|NZ_AP014938|CRISPRCasFinder
GCGGAGAAATTTTCGCTCACGCAGAGACTCGGGATAAGGCTATCGAG
>3.14|109298|47|NZ_AP014938|CRISPRCasFinder
GTGGGGAAATCAGGAAGGCGTACACGAAATCGCCGGGCTCCTGCCAG

CRISPR arrays and Neighbor proteins around NZ_AP014938_3

CRISPR arrays

The CRISPR arrays of NZ_AP014938_3

>merge|NZ_AP014938|3|108839-109379|CRT,CRISPRCasFinder
GCCTCAATGAAAGTCCCCGCCCGAAGGCAGAGAAATCGCGTCCAACGAGACAGCCTACTTCTTCGGCAGTCAGGCCTCAATGAAAGCCCTTCCAAAAAGGACGGGAAATGCCGATCGCGTCGATAGCCTCCTTAGTCGTGCCACCGCCTCAATGAAAGTCCCCGCCTGAAGGAGGAGAAATACGGCGTCTCGACGTTCATTGCTGGAGGTGTCCTTGCCTCAATGAAAGTCCCCACCCGAAGGCGGAGAAATCTCAATCCCAGGAAGCCATAATCAGCCTCAACAGGCCCTCAATGAAAGTCCCCGCCCGAAGACGGGGAAATCGCTTGCGCGGGTCGCGGTAGGGCAACGCGCATGAGATGCCTCAATGAAAGTCCCCACCCGAAGGCGGAGAAATTTTCGCTCACGCAGAGACTCGGGATAAGGCTATCGAGCCTCAATGAAAGTCCCCGCCCGAAGGTGGGGAAATCAGGAAGGCGTACACGAAATCGCCGGGCTCCTGCCAGCCTCAATGAAAGTCCCCGCCCGAAGGCGGGAAAAT

>NZ_AP014938|3|1|108839-109379|CRT
GCCTCAATGAAAGTCCCCGCCCGAAGGCAGAGAAAT	CGCGTCCAACGAGACAGCCTACTTCTTCGGCAGTCAG
GCCTCAATGAAAGCCCTTCCAAAAAGGACGGGAAAT	GCCGATCGCGTCGATAGCCTCCTTAGTCGTGCCACC
GCCTCAATGAAAGTCCCCGCCTGAAGGAGGAGAAAT	ACGGCGTCTCGACGTTCATTGCTGGAGGTGTCCTT
GCCTCAATGAAAGTCCCCACCCGAAGGCGGAGAAAT	CTCAATCCCAGGAAGCCATAATCAGCCTCAACAGG
CCCTCAATGAAAGTCCCCGCCCGAAGACGGGGAAAT	CGCTTGCGCGGGTCGCGGTAGGGCAACGCGCATGAGAT
GCCTCAATGAAAGTCCCCACCCGAAGGCGGAGAAAT	TTTCGCTCACGCAGAGACTCGGGATAAGGCTATCGA
GCCTCAATGAAAGTCCCCGCCCGAAGGTGGGGAAAT	CAGGAAGGCGTACACGAAATCGCCGGGCTCCTGCCA
GCCTCAATGAAAGTCCCCGCCCGAAGGCGGGAAAAT

>NZ_AP014938|3|3|108840-109369|CRISPRCasFinder
CCTCAATGAAAGTCCCCGCCCGAAG	GCAGAGAAATCGCGTCCAACGAGACAGCCTACTTCTTCGGCAGTCAGG
CCTCAATGAAAGCCCTTCCAAAAAG	GACGGGAAATGCCGATCGCGTCGATAGCCTCCTTAGTCGTGCCACCG
CCTCAATGAAAGTCCCCGCCTGAAG	GAGGAGAAATACGGCGTCTCGACGTTCATTGCTGGAGGTGTCCTTG
CCTCAATGAAAGTCCCCACCCGAAG	GCGGAGAAATCTCAATCCCAGGAAGCCATAATCAGCCTCAACAGGC
CCTCAATGAAAGTCCCCGCCCGAAG	ACGGGGAAATCGCTTGCGCGGGTCGCGGTAGGGCAACGCGCATGAGATG
CCTCAATGAAAGTCCCCACCCGAAG	GCGGAGAAATTTTCGCTCACGCAGAGACTCGGGATAAGGCTATCGAG
CCTCAATGAAAGTCCCCGCCCGAAG	GTGGGGAAATCAGGAAGGCGTACACGAAATCGCCGGGCTCCTGCCAG
CCTCAATGAAAGTCCCCGCCCGAAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl|CDD|377432
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl|CDD|237976
NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl|CDD|274235
NZ_AP014938.1|WP_060823585.1|90011_90863_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	unknown	unknown	gnl|CDD|237001
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	unknown	unknown	gnl|CDD|271320
NZ_AP014938.1|WP_060823586.1|91563_93759_-|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl|CDD|271320
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl|CDD|378223
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl|CDD|376583
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	unknown	unknown	gnl|CDD|224402
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	unknown	unknown	gnl|CDD|236090
NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl|CDD|274005
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	unknown	unknown	gnl|CDD|237000
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	unknown	unknown	gnl|CDD|235906
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	gnl|CDD|187733

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	7.6e-89	292.6	0.0
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	6.1e-17	56.9	0.0
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	4.6e-21	69.6	0.0
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	1.9e-88	291.9	1.5
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	3.6e-80	265.0	8.6
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	2.5e-146	481.9	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	gnl|CDD|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	1.03457e-10
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	gnl|CDD|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	2.01789e-68
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	gnl|CDD|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0.00203925
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.62042e-84
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	gnl|CDD|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	1.98377e-64
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.62642e-18
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	gnl|CDD|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	1.41217e-14
NZ_AP014938.1|WP_060823586.1|91563_93759_-|LPXTG-cell-wall-anchor-domain-containing-protein	gnl|CDD|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	7.28839e-14
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.08474e-104
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	gnl|CDD|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.1891e-25
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl|CDD|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	7.1838e-77
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000981202
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl|CDD|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	4.70631e-70
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	gnl|CDD|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	0.00135953
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	gnl|CDD|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00420809
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	gnl|CDD|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	2.98519e-167

Protein sequences

>NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein
MLTIGADPISQATSMATGVIVNLIAFVLIEMVLKPILARVGYLPEPGIPRNAHSEEMLGDGAAISALPLNIGEESAHIHVSVMSHGGTVITVLTPHSHVTLHVSGDVQKPPTTTESQ
>NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7
MSQTTITLADLIENVKLGGGSVITSITELEPAAGPHASVAPAKFVDGKGNDSKSVFAYETRYIVEEVQNPDESENEDESKEPEKDVKGQPQKVVLIDSKQSELNRAEAAIEQGRQYGDEAVVKIPRAVVTYQTENGPVEYSDMELSHRIFDGHFRAGTIDDKLITENDQYRALRNSTPADMSALLNTAPAALLFGAWDSTRKSHQVRLRSALVGEIIGVLADQEPGAEHRQARRGGARVDAVAASVKLAPKDMESLVNDQEAELSPGNVGARRNDIKKAKADARISASTLGLGSIPPTLEETGAVACHRIIRSWVLSLATLRQLRFGQDETKNVAARALLAALGLNAIARAERELYIRANCDLIESAAPVVTLDQRFGKKKTFAPLTVEHTDQLLLEAIENAKKAGVADWNGQTFNVEGNPIIIKNATAEDAE
>NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MTNLGILARFPLGVYQGHKADGSPDAFPDPARLQAALLSAAAQGPHAIIENGQLAPSDESLKALKWLEENPPTGLQLPDMCPVYRSPNKMSRFMYREVAYSEKDGRQTERRAVSDGWAVSDTIGWQYDKVPADIAETITQLCGEVPSLGEASSLTALYTGDVEPTHTIDTKSGPFEAGGMPVRVPVPGRVDALMRAHAEAYPVKVPTKAGDKTAASDTMRPSPVPTAGLGSIKYQPVEAETSTSPWEYLWLLEVDGEELKSEQYVKACSLLHKALVAAAGFGAPSLITGRYPKGHKPANSLALQYLPARYLPDYLRREVKSKGVLLVLVPASAPTDEAVELGIALRSVETLYAQDFPRLTVKLRQKRLPAQGFWDAPKTGYKRLWRTLSAAVPESRVFNRPKKTETKAWTFADAALLSMAYVWRDSFEAPEAETSRERIRSLRDQVAKKAEAKVLEAHRVTQNPAAYAYKLPRTLPAEPWRGVVDLGNLATDTTLVAIGQSRHMGGGLLVPFDVPTEEYDRRKKEEKHD
>NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MTSPATALPSITRDEFGDFFAALNGGYDPFSWQEEVLDHICEHGVWPERINAPTGSGKSSVVDIHLFANALAAVGAAPRVPRRLCVTVGRRALVDSQATRADKILGRMGKALTDGSGEPDILRRVAEALHSFQTRNDEKGSKPFETGHIRGELSNRNLPVTDISACAIIAATPDMYGSRALFRGYGSTKAARPRETALLTMDTVMVLDEAHMNRQLLHTTQRIAELQKYEADLGVPTLQVVETTATPSTEDSESTTLGVDIEALDTPNDKELHRRVYSHKELVLHPIDKWDGKPGNSPTVNAAVDAIMERLAHREAGESSKKAYTVGCIVNHVRTAISIKEALAKNKALGKDEVQLLVGRMRPYDLKNLQAEHSGLFITEGDESVKVVVATQTLEVGIDVDFADLVTELAPASSLAQRFGRVNRLGHRTDSKVVVIEPASSDLVKKDAPPYKAVDLSNAYAWLEALNGAENPSVNPAAMVKNPPVQSSPERLLYQRPEWPDLLEFSRTDENPYDEPDLDLWLHDSLDAETAMGGVIVRDNLPSNTSAAMEILKTSYFAPSDRETFPANLKILQEILDYQDEHGVKPRKFLYRQGEISLWQDADHGAESSQSLAPGDVLLLDMGSVPFTNQGIAVTQRELPSKKDELKAVPFLDDAELYVAELYVYEKCADREKHFREYLGLSPEEAAELLDSQSTDGKKMIASELSTEAEGGQEVIAWYAEVTGKESVEGSDIAQELVLAAPVLLDDHQNDVAERTRQLAENLGLAPEFSEALELAAKYHDEGKRDLRFQQMLGADPDAEALAKSGHRSVAEAYRARSRSALPRGWRHEQLSALMVAASPEKVGEHRDLVLRIIGCSHGHGRFSFAHDAGFLLKEGYLPEGTDYEALKEQATRLFNVGYWDNLMEQTSRTYGPYATAYLEAVERAADAQISREGH
>NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase
MAMLTIAGDYTSALTHFALYGLSLMVEQKHPGAVTVGWSQEGQPRAQMHAEGVSEEEIAECVHSYVSSLAAEDSWVNVDQSYGAGKEAAVFSPFSPRFRGIDAEKYPDDWASHQKTRQAHLDALMERDDLLSLLWISGLGEPSYWRFEAKAPRPDHGASRWEMKTRNKGQEFVKDRLRLMCADLATWEPSAMLSGITGQTLYDSLDKKPDSRTGTGFTVPQPTDTALAFCALVGIANFPVIHQVHRIGVTPGAYPYNALHPRLMVLPVSSGKVTPARLRTVLRSHPYRRVVDEVGKAMERGSLSSDIFVSELVDEKAILREKGVQAFVAFPIVKVGSDSAPERQVLKGSAIPMG
>NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter
MEAKEFSEKALLFFAKSKYADLFGVALVIAIAIASGYLSTNLAKYVDWGPITSFIPLGVISVINVGISMMSTRLTGRLSNVGNVLGIINTALSGAIDYILGNKAAIITYPVTFIVYTFAIRRWQNSERGKALEPPTGTKGQLIIGGIVAGSFAFSLVTNYIGYGGKTSFLFWITTVVFGLSLSANILNALKLTMQWQFWFLYNTVQCIKALTQGNFANVGKYIFYIINSVAALLLWTRNGTASKGAVAAVA
>NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein
MPLLTHRLSRRFFVKGASAAAAAGALTLQAQAAQADEAPANLAPATEETKGPRLVIQRATITETGMTVNYTAHGLREFLTEGTTLTVRHGYVRNDSFETLRSWPLTPEFDGDADSFSGSDQFPIELMQGEGVDHALQLDICSDPWGQEITHQIAARIPLAETKILKTSFEDVPDNHPFAEDIRMANQKKWLMPNPQTGAFEPDRPVTREELIALLNHAAGHAGVSENSDVAPFADAAGRPTANALHWARDRKITEPLTGGDKIDPTAPVSHEELAAVLFQYNAEVQLTEMKEGTGSRFRDVLGAGTLHRYVAWAGANDIVLDASGVFNPTAPTTRAELARFIRRYKLQNLLFTDFSYVS
>NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase
MNLASSKAFKGLAVGSLALAISGVAAIPASFAAESTRAASQSSEARTITDKAMAKITQGLPGQFQVAYSKKTNKIWVAGTADRDEHVSTIARIDANSLKIEAVAELPIIKGDSGYSYEGAYGITVDDEEGTVWVTSTRDNSVAVYDQATMKQLWTNAGLSKDDPNWIEHPREVRVDHESGKAFVTGRFFVSAIDLKTKKVEKIQLEGAPDGGTRYISMNILVDGGKLYVPERTGGKLFVIDTKTFKVEKTISVKGDKDGEVRPSDVAIDHSQNEIYVSSQGVKGENSGVSVYDATTYEFKKFIPFGTQALSLDNDEANDLVYVSDFGTGKVGVIDGGAADKLIAEVTMNGGKANDLVVLPNGSVVAVDKQAGATATVPYVLDGTTGTVSTSNKVTSKPSKDKQGNEVPAKTSDIQANSILKFKVTATAGDNSEVKQVTPETREFQGYPATATKTKATDSTAPSTEAHRTVDANGSVANIIQGLPGQFQVGYSKKNHKLFVPTVGARGGLASSLARVDADTLQTEAFAELPVKKNDKGQYGYTSAYGVTVDDVDGTVWVTNTIDNSVAVYDQQTLKLIWTNEGVKEGDPNWIEHPRSVLVDHESGKAFVTGRFFVSAIDLKTKQVEKIQLEGAPDGGTRYVSMNLFLDGGKLYVPERTGGKLFVVDTKTFKVEKTIQTQGEDSTVEVRPSDVAVDHSLNEIYVSSQGVKGVNSGISVYDLTTGEFKKFVKFGTQALALEHDEDRDLVYVTDFGTGKVAVFDGRADEVIGEVEMNGAAANDVTLLKDGSVLVLDKKDRDEKVTLPYVLNGTTGEITTASEYTTLPTKDRQGNDVPASVQQLKANSILKFKVGVKDTDASAAPVGITPTSLQFAGYPTVTGVKAEESKPADPKPADPKPADPKPEDKKAEDKKAEDAKSEDKKSDAKSENTAEAKDQTSKDQASQSDSKSDAKTGAQDSKSAPDAVKADKSGSAVKNGGSDSSTGGSSVAKSEAGSSQAGSSRSALANTGANAVMPLVAFASVALIAGAALVMRRRKA
>NZ_AP014938.1|WP_060823586.1|91563_93759_-|LPXTG-cell-wall-anchor-domain-containing-protein
MNLTPSSGKALKGLAVGSLALAISGAAMIPASFAAPNNAHQTAASSASAPSTASLSRVVDTSASVAQITQGLPGQYQVAYSKATNKIWMVGVGGNSNLASTIARVNADTLQIEEVAALPFELDKNGEFGYISAYGITVDDVSGTVWVTNTTDNSLSVFDQNTMEQVWTNHGISESDPNWIEHPRSVLVDHNSGKVFVTGRYYVSAIDMKTFEVTKLQLEGTPNGGTRYVGMNMTVDGDKLYVPERTGGKVFVINTHTFKTEQVIQTRGENSSVEVRPSDVTIDHSENEIYVSSQGVNGVNSGISVYDLTTGAFKKFVKFGTQALSMENDEARDLVYVTDFGTGKIAIFDAKTDRVIGEVEMNGGKANDLTIAEDGSVIAVDKQDIANTTAAVPYVLNAKTGDGSLTDTYTSKATVDRNGKTVPSSQQKLVPNSIVKFYAEVSEGEFTSTATINPAKVPFQGYPKQATAVLIDPTLNFAEGTVDITRPYTFHVSGYDYDKPPAEGLRLFLVKEGEWSMGYDKLTDSELANIQKVSTIVPASAFVYNSRTGKYSFEATLRVPANTMQYSQGYLLGTVTAGSDVATNRNYDSAVSLIVNDAKDAGNADNRNEADEPAFPAAASASPSASASAVAEKPAAEQSKGEPSKAEEANDQLGTTAKTAPLKNSSSAKSESQPKSSGVDSQVSASATKSAPQSKGSLAKTGAQSVLSLAAVGAFALIAGAAVMVLRRRKA
>NZ_AP014938.1|WP_060823585.1|90011_90863_+|hypothetical-protein
MSTMYTRRTALTALGLGTAALLAACSSKSSSESSATASASATESSTASASATASVSPTAEATTTVEPGPSMKGEVVLADYSSTGTFEPGTKEHKAVNVAIPVEPAKLRENSVEGLHAFIAYWQATLNYLLLTGDGTRFTNIDHTGDYSTVAEFFQSMYASESGWVIGSERPMILSLTADRPTKDTRTGYYTWASEMVIDGAEGAGVYSKTNDRVQPLTEVFKYPGKPVAGQIVAHYQDGTWRMVRRAPGTASASPVPSLSPSASAEGAASAEATAASAEASAQ
>NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2
MRDDARRTLIAYDVPSDRRRAKLAKLILSYGDRIQYSVFIVDAAPAKVRRIKDEVQDLIDPDEDSVLFCDLGLLARLDEPTFSYIGRAREVTESDALIL
>NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1
MSTPYSAGDELPISLVMHTVYCPRRAWIESNGEKTDTSQMQEGQSAHKRVDDPKTSRGTQQRAVTISSTRLGLTGRCDALEPQEDGSTRIIEYKATPVRRNASVTPAHRVQLALQKICLEEAGETVSECAVHFTNHNKTVPVDISDEDIRTAEEYVHTTRALIDNPTAPQPLEDSPRCSWCSHISVCLPDESHGKENITRVVASNPDSQVAHLTTQGSRATVQQGRLIVQHLGETISSVPLERVHSLVVHGNIDVSSALLRELMWRNCTIIWCSSTGRVYGWSQPGTGPNGLARVQQHVLSAQGHLPIAAAMIASKISNQATLLRRNGHAADVCRTMRDIQKHTPQATSIPEMLGLEGEAASLYFGNFATMLKEDVLTELGWTWTGRQGRGANDPINILLNYAYGMLSSECIRAILTCGLDPHAGFLHSSSRNKPALALDLMEEFRAVIADSVVVSLINRKQVKASTFTAVGGSYRLTPEGRKTVIAAFEKRMATEITHPTYGYSVTWRRAIEVQARMLLGVINGTTREYTGVTVR
>NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE
MPTTTVHLTDRIPRVSADELLAGFRPSERFGEVSFDSYIPDPNQPSQAEAVQKLKDFGDKINGGGAGAGFFGRLFGGKKKDSTKAGLYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSSYKLVCIDEFELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALGEGRFAAEDFKREIQVLASQFEVHRVDGEDFRHRGLPAAPEPVADDAFDAKVEEVFGGQTVGVDNFADLVEHLAKVHPSRYRQLIDGLDGIAWRDVHPITEQSVALRFVVLADRLYDKDLPIVSSGVPFDKVFTEEMLAGGYQKKYFRAVSRLTALAREGMLGEEAER
>NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein
MDSTIFTRRTLLGSGALVGLGALLAACGQQANNEAAATASATPTETTSASAAASDATSASATPKPVVTRGYSGQSKAPDGEYRKADGYGPAQNVPKPRNEPAQYPETEEGLHHMMEDWVIAHNYAIQTGDCSYAFKYVTEDSEEYGFYVYIEELYDNGGWVINGLDSYQAESALIYDDSQKIYRMKVRRFWTTAMYVESNGKMTRKANTNTDDDSFYFLFNYSNGYWKITDTKYENDL
>NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein
MKKINSFSLTFCVALTLFTHNLHTLPSSGSECTTKNDKGHCIKTSKNKRYPESERSGDTSQRNTQNTVAVSSDPSASEASVAKMAQEWEKEHPEQLDGAKQQYLASSAEARKAGDAECYTKGDRRPGHYVIGSLPLGDEANRIPNHVGGRYCVPNDAKTLTSNDPAQPKGPSPEEMLQEIEDQFAKTDIQAPVLKQSYNLGTGLSEDNPNVYKGDQINFYVDAPTARWEGDLMIGHVEMESYPTQMTIQYGNGDEGSFYTMGKPVSRARGKESRKTATSYAYQRSGNFHAYATVSYSGRFRVNGGDWQALDVVLTKETVDPLLVRVWWTDVGRVAGDCSYDDTRWGCKNDPTMGKKDNPNPRLRKADIRTGQRWHLNDNGDGDTEYSLHRDWPDM
>NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein
MTSVFLTRRAVLSGGALLGMSALLAACGQQAANEASVSASSSATPSETASASATATESASASATPSPRVTRGYSGNSKAPDGEYRKADGYGPAQNVPEPRKEPAQYPETEDGIDHMMQDWLTAHNYAIQTGDCAPVFRYVEKTSKEYPFYEYIDDLYKRGGWVVDGLDAYRAEGDLIYDDQQKFYRMKVRRFWTTVMYVDSNGKITKQANTNKDDDKFNFFFSYSNGYWKIIGSGYSDTPENNEE
>NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein
MTSVFLTRRAMLSGGALLGLSALFAACGQQANNEAAATASAAPSETALASAAVSEAATSTPSPVITRGYSGGSKAPDGEYRKADGKGPAQNVPEPRKEPAQYPETEEGLMKMMQDWIVAHNYGIQTGDCSYAFKYVSEESEEYGFYKYIETLYKNGGWAVNSLDSYQSESTLFYDESQKIYRMKVHRIWSTEIYIESNGDITRRANTDTSDDTFYFLYTYSDGYWKIINSKYEHEL
>NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein
MTSVILTRRAMLSGGTLLGLGALFAACGQQASNEAAATASAVPSETTSASATASESPSASATPSTVRGYSGGSKAPDGEYRPADKYGPAQNVPKPSAPEEGYNEKSLEGMRKTMDAWILWGNYGTQTGNYSMAFKFMSPTFEDERKAYTGVEDLYKRGGWVIGGINHYLADGNPWSEDGETYFWKAYREWDYETYVESDGSWRKWSNDDKTDDTFKFELKHNGQKWEIMNYEPVDD
>NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase
MAKKTKGKKSGAATAAVALLTETNTPFQMREYEHVEGVTSFGEEAAKNLGASEEQVFKTLLIVHEKDFAVAIVPVSGKLNIKAAAAALGWKSASMCDPKVAERRTGYVVGGISPLGQKTPSPTLLDESAQLFDTIMVSGGKRGLDVELAPDDLLKLTNGKYADIRA
>NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MGNSLPGVGAIAKNWREVLKPEEYAVLREGGTERAFTGEYWNTHTEGVYSCRACGTELFRSDQKFDSHCGWPSFFAPLAEDRVRYLEDTTFGMRRVEVRCAACDSHLGHVFEGEGYPTPTDLRYCINSVCLTLTPAGEAQLGDTPVDEAESAE

Crispr_ID: NZ_AP014938_4

• CRISPR_ID: NZ_AP014938_4
• CRISPR_location: 111858-111965
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: cas1,cas2,csb1gr7,csb2gr5,cas3,csb3

Consensus repeat of NZ_AP014938_4

Consensus_repeat	Method
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CRISPRCasFinder

spacers of NZ_AP014938_4

>4.1|111894|35|NZ_AP014938|CRISPRCasFinder
ACCCATTGACCCGGAGGCATGCCCTCCACGGTGTA

CRISPR arrays and Neighbor proteins around NZ_AP014938_4

CRISPR arrays

The CRISPR arrays of NZ_AP014938_4

>merge|NZ_AP014938|4|111858-111965|CRISPRCasFinder
CCCTCAATGAAGGTCCCTAGGAAAAGGAAGGGAAATACCCATTGACCCGGAGGCATGCCCTCCACGGTGTACCCTCAATGAAAGTCCCTCCAAATAGGACGGGAAATT

>NZ_AP014938|4|4|111858-111965|CRISPRCasFinder
CCCTCAATGAAGGTCCCTAGGAAAAGGAAGGGAAAT	ACCCATTGACCCGGAGGCATGCCCTCCACGGTGTA
CCCTCAATGAAAGTCCCTCCAAATAGGACGGGAAATT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl|CDD|377432
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl|CDD|237976
NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl|CDD|274235
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	unknown	unknown	gnl|CDD|224402
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	unknown	unknown	gnl|CDD|237001
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	unknown	unknown	gnl|CDD|271320
NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein	unknown	unknown	gnl|CDD|239550
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl|CDD|378223
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl|CDD|376583
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	unknown	unknown	gnl|CDD|236090
NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D	unknown	unknown	gnl|CDD|223426
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl|CDD|274005
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	unknown	unknown	gnl|CDD|237000
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	unknown	unknown	gnl|CDD|235906
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	gnl|CDD|187733

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	7.6e-89	292.6	0.0
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	6.1e-17	56.9	0.0
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	1.9e-88	291.9	1.5
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	3.6e-80	265.0	8.6
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	4.6e-21	69.6	0.0
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	2.5e-146	481.9	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	gnl|CDD|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	1.03457e-10
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	gnl|CDD|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	2.01789e-68
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	gnl|CDD|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0.00203925
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.62042e-84
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000981202
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.62642e-18
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	gnl|CDD|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	1.41217e-14
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.08474e-104
NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein	gnl|CDD|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.25059e-23
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	gnl|CDD|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.1891e-25
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl|CDD|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	7.1838e-77
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	gnl|CDD|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	1.98377e-64
NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D	gnl|CDD|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	1.21483e-67
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl|CDD|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	4.70631e-70
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	gnl|CDD|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	0.00135953
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	gnl|CDD|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00420809
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	gnl|CDD|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	2.98519e-167

Protein sequences

>NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1
MSTPYSAGDELPISLVMHTVYCPRRAWIESNGEKTDTSQMQEGQSAHKRVDDPKTSRGTQQRAVTISSTRLGLTGRCDALEPQEDGSTRIIEYKATPVRRNASVTPAHRVQLALQKICLEEAGETVSECAVHFTNHNKTVPVDISDEDIRTAEEYVHTTRALIDNPTAPQPLEDSPRCSWCSHISVCLPDESHGKENITRVVASNPDSQVAHLTTQGSRATVQQGRLIVQHLGETISSVPLERVHSLVVHGNIDVSSALLRELMWRNCTIIWCSSTGRVYGWSQPGTGPNGLARVQQHVLSAQGHLPIAAAMIASKISNQATLLRRNGHAADVCRTMRDIQKHTPQATSIPEMLGLEGEAASLYFGNFATMLKEDVLTELGWTWTGRQGRGANDPINILLNYAYGMLSSECIRAILTCGLDPHAGFLHSSSRNKPALALDLMEEFRAVIADSVVVSLINRKQVKASTFTAVGGSYRLTPEGRKTVIAAFEKRMATEITHPTYGYSVTWRRAIEVQARMLLGVINGTTREYTGVTVR
>NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2
MRDDARRTLIAYDVPSDRRRAKLAKLILSYGDRIQYSVFIVDAAPAKVRRIKDEVQDLIDPDEDSVLFCDLGLLARLDEPTFSYIGRAREVTESDALIL
>NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein
MLTIGADPISQATSMATGVIVNLIAFVLIEMVLKPILARVGYLPEPGIPRNAHSEEMLGDGAAISALPLNIGEESAHIHVSVMSHGGTVITVLTPHSHVTLHVSGDVQKPPTTTESQ
>NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7
MSQTTITLADLIENVKLGGGSVITSITELEPAAGPHASVAPAKFVDGKGNDSKSVFAYETRYIVEEVQNPDESENEDESKEPEKDVKGQPQKVVLIDSKQSELNRAEAAIEQGRQYGDEAVVKIPRAVVTYQTENGPVEYSDMELSHRIFDGHFRAGTIDDKLITENDQYRALRNSTPADMSALLNTAPAALLFGAWDSTRKSHQVRLRSALVGEIIGVLADQEPGAEHRQARRGGARVDAVAASVKLAPKDMESLVNDQEAELSPGNVGARRNDIKKAKADARISASTLGLGSIPPTLEETGAVACHRIIRSWVLSLATLRQLRFGQDETKNVAARALLAALGLNAIARAERELYIRANCDLIESAAPVVTLDQRFGKKKTFAPLTVEHTDQLLLEAIENAKKAGVADWNGQTFNVEGNPIIIKNATAEDAE
>NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MTNLGILARFPLGVYQGHKADGSPDAFPDPARLQAALLSAAAQGPHAIIENGQLAPSDESLKALKWLEENPPTGLQLPDMCPVYRSPNKMSRFMYREVAYSEKDGRQTERRAVSDGWAVSDTIGWQYDKVPADIAETITQLCGEVPSLGEASSLTALYTGDVEPTHTIDTKSGPFEAGGMPVRVPVPGRVDALMRAHAEAYPVKVPTKAGDKTAASDTMRPSPVPTAGLGSIKYQPVEAETSTSPWEYLWLLEVDGEELKSEQYVKACSLLHKALVAAAGFGAPSLITGRYPKGHKPANSLALQYLPARYLPDYLRREVKSKGVLLVLVPASAPTDEAVELGIALRSVETLYAQDFPRLTVKLRQKRLPAQGFWDAPKTGYKRLWRTLSAAVPESRVFNRPKKTETKAWTFADAALLSMAYVWRDSFEAPEAETSRERIRSLRDQVAKKAEAKVLEAHRVTQNPAAYAYKLPRTLPAEPWRGVVDLGNLATDTTLVAIGQSRHMGGGLLVPFDVPTEEYDRRKKEEKHD
>NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MTSPATALPSITRDEFGDFFAALNGGYDPFSWQEEVLDHICEHGVWPERINAPTGSGKSSVVDIHLFANALAAVGAAPRVPRRLCVTVGRRALVDSQATRADKILGRMGKALTDGSGEPDILRRVAEALHSFQTRNDEKGSKPFETGHIRGELSNRNLPVTDISACAIIAATPDMYGSRALFRGYGSTKAARPRETALLTMDTVMVLDEAHMNRQLLHTTQRIAELQKYEADLGVPTLQVVETTATPSTEDSESTTLGVDIEALDTPNDKELHRRVYSHKELVLHPIDKWDGKPGNSPTVNAAVDAIMERLAHREAGESSKKAYTVGCIVNHVRTAISIKEALAKNKALGKDEVQLLVGRMRPYDLKNLQAEHSGLFITEGDESVKVVVATQTLEVGIDVDFADLVTELAPASSLAQRFGRVNRLGHRTDSKVVVIEPASSDLVKKDAPPYKAVDLSNAYAWLEALNGAENPSVNPAAMVKNPPVQSSPERLLYQRPEWPDLLEFSRTDENPYDEPDLDLWLHDSLDAETAMGGVIVRDNLPSNTSAAMEILKTSYFAPSDRETFPANLKILQEILDYQDEHGVKPRKFLYRQGEISLWQDADHGAESSQSLAPGDVLLLDMGSVPFTNQGIAVTQRELPSKKDELKAVPFLDDAELYVAELYVYEKCADREKHFREYLGLSPEEAAELLDSQSTDGKKMIASELSTEAEGGQEVIAWYAEVTGKESVEGSDIAQELVLAAPVLLDDHQNDVAERTRQLAENLGLAPEFSEALELAAKYHDEGKRDLRFQQMLGADPDAEALAKSGHRSVAEAYRARSRSALPRGWRHEQLSALMVAASPEKVGEHRDLVLRIIGCSHGHGRFSFAHDAGFLLKEGYLPEGTDYEALKEQATRLFNVGYWDNLMEQTSRTYGPYATAYLEAVERAADAQISREGH
>NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase
MAMLTIAGDYTSALTHFALYGLSLMVEQKHPGAVTVGWSQEGQPRAQMHAEGVSEEEIAECVHSYVSSLAAEDSWVNVDQSYGAGKEAAVFSPFSPRFRGIDAEKYPDDWASHQKTRQAHLDALMERDDLLSLLWISGLGEPSYWRFEAKAPRPDHGASRWEMKTRNKGQEFVKDRLRLMCADLATWEPSAMLSGITGQTLYDSLDKKPDSRTGTGFTVPQPTDTALAFCALVGIANFPVIHQVHRIGVTPGAYPYNALHPRLMVLPVSSGKVTPARLRTVLRSHPYRRVVDEVGKAMERGSLSSDIFVSELVDEKAILREKGVQAFVAFPIVKVGSDSAPERQVLKGSAIPMG
>NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter
MEAKEFSEKALLFFAKSKYADLFGVALVIAIAIASGYLSTNLAKYVDWGPITSFIPLGVISVINVGISMMSTRLTGRLSNVGNVLGIINTALSGAIDYILGNKAAIITYPVTFIVYTFAIRRWQNSERGKALEPPTGTKGQLIIGGIVAGSFAFSLVTNYIGYGGKTSFLFWITTVVFGLSLSANILNALKLTMQWQFWFLYNTVQCIKALTQGNFANVGKYIFYIINSVAALLLWTRNGTASKGAVAAVA
>NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein
MPLLTHRLSRRFFVKGASAAAAAGALTLQAQAAQADEAPANLAPATEETKGPRLVIQRATITETGMTVNYTAHGLREFLTEGTTLTVRHGYVRNDSFETLRSWPLTPEFDGDADSFSGSDQFPIELMQGEGVDHALQLDICSDPWGQEITHQIAARIPLAETKILKTSFEDVPDNHPFAEDIRMANQKKWLMPNPQTGAFEPDRPVTREELIALLNHAAGHAGVSENSDVAPFADAAGRPTANALHWARDRKITEPLTGGDKIDPTAPVSHEELAAVLFQYNAEVQLTEMKEGTGSRFRDVLGAGTLHRYVAWAGANDIVLDASGVFNPTAPTTRAELARFIRRYKLQNLLFTDFSYVS
>NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase
MNLASSKAFKGLAVGSLALAISGVAAIPASFAAESTRAASQSSEARTITDKAMAKITQGLPGQFQVAYSKKTNKIWVAGTADRDEHVSTIARIDANSLKIEAVAELPIIKGDSGYSYEGAYGITVDDEEGTVWVTSTRDNSVAVYDQATMKQLWTNAGLSKDDPNWIEHPREVRVDHESGKAFVTGRFFVSAIDLKTKKVEKIQLEGAPDGGTRYISMNILVDGGKLYVPERTGGKLFVIDTKTFKVEKTISVKGDKDGEVRPSDVAIDHSQNEIYVSSQGVKGENSGVSVYDATTYEFKKFIPFGTQALSLDNDEANDLVYVSDFGTGKVGVIDGGAADKLIAEVTMNGGKANDLVVLPNGSVVAVDKQAGATATVPYVLDGTTGTVSTSNKVTSKPSKDKQGNEVPAKTSDIQANSILKFKVTATAGDNSEVKQVTPETREFQGYPATATKTKATDSTAPSTEAHRTVDANGSVANIIQGLPGQFQVGYSKKNHKLFVPTVGARGGLASSLARVDADTLQTEAFAELPVKKNDKGQYGYTSAYGVTVDDVDGTVWVTNTIDNSVAVYDQQTLKLIWTNEGVKEGDPNWIEHPRSVLVDHESGKAFVTGRFFVSAIDLKTKQVEKIQLEGAPDGGTRYVSMNLFLDGGKLYVPERTGGKLFVVDTKTFKVEKTIQTQGEDSTVEVRPSDVAVDHSLNEIYVSSQGVKGVNSGISVYDLTTGEFKKFVKFGTQALALEHDEDRDLVYVTDFGTGKVAVFDGRADEVIGEVEMNGAAANDVTLLKDGSVLVLDKKDRDEKVTLPYVLNGTTGEITTASEYTTLPTKDRQGNDVPASVQQLKANSILKFKVGVKDTDASAAPVGITPTSLQFAGYPTVTGVKAEESKPADPKPADPKPADPKPEDKKAEDKKAEDAKSEDKKSDAKSENTAEAKDQTSKDQASQSDSKSDAKTGAQDSKSAPDAVKADKSGSAVKNGGSDSSTGGSSVAKSEAGSSQAGSSRSALANTGANAVMPLVAFASVALIAGAALVMRRRKA
>NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE
MPTTTVHLTDRIPRVSADELLAGFRPSERFGEVSFDSYIPDPNQPSQAEAVQKLKDFGDKINGGGAGAGFFGRLFGGKKKDSTKAGLYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSSYKLVCIDEFELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALGEGRFAAEDFKREIQVLASQFEVHRVDGEDFRHRGLPAAPEPVADDAFDAKVEEVFGGQTVGVDNFADLVEHLAKVHPSRYRQLIDGLDGIAWRDVHPITEQSVALRFVVLADRLYDKDLPIVSSGVPFDKVFTEEMLAGGYQKKYFRAVSRLTALAREGMLGEEAER
>NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein
MDSTIFTRRTLLGSGALVGLGALLAACGQQANNEAAATASATPTETTSASAAASDATSASATPKPVVTRGYSGQSKAPDGEYRKADGYGPAQNVPKPRNEPAQYPETEEGLHHMMEDWVIAHNYAIQTGDCSYAFKYVTEDSEEYGFYVYIEELYDNGGWVINGLDSYQAESALIYDDSQKIYRMKVRRFWTTAMYVESNGKMTRKANTNTDDDSFYFLFNYSNGYWKITDTKYENDL
>NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein
MKKINSFSLTFCVALTLFTHNLHTLPSSGSECTTKNDKGHCIKTSKNKRYPESERSGDTSQRNTQNTVAVSSDPSASEASVAKMAQEWEKEHPEQLDGAKQQYLASSAEARKAGDAECYTKGDRRPGHYVIGSLPLGDEANRIPNHVGGRYCVPNDAKTLTSNDPAQPKGPSPEEMLQEIEDQFAKTDIQAPVLKQSYNLGTGLSEDNPNVYKGDQINFYVDAPTARWEGDLMIGHVEMESYPTQMTIQYGNGDEGSFYTMGKPVSRARGKESRKTATSYAYQRSGNFHAYATVSYSGRFRVNGGDWQALDVVLTKETVDPLLVRVWWTDVGRVAGDCSYDDTRWGCKNDPTMGKKDNPNPRLRKADIRTGQRWHLNDNGDGDTEYSLHRDWPDM
>NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein
MTSVFLTRRAVLSGGALLGMSALLAACGQQAANEASVSASSSATPSETASASATATESASASATPSPRVTRGYSGNSKAPDGEYRKADGYGPAQNVPEPRKEPAQYPETEDGIDHMMQDWLTAHNYAIQTGDCAPVFRYVEKTSKEYPFYEYIDDLYKRGGWVVDGLDAYRAEGDLIYDDQQKFYRMKVRRFWTTVMYVDSNGKITKQANTNKDDDKFNFFFSYSNGYWKIIGSGYSDTPENNEE
>NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein
MTSVFLTRRAMLSGGALLGLSALFAACGQQANNEAAATASAAPSETALASAAVSEAATSTPSPVITRGYSGGSKAPDGEYRKADGKGPAQNVPEPRKEPAQYPETEEGLMKMMQDWIVAHNYGIQTGDCSYAFKYVSEESEEYGFYKYIETLYKNGGWAVNSLDSYQSESTLFYDESQKIYRMKVHRIWSTEIYIESNGDITRRANTDTSDDTFYFLYTYSDGYWKIINSKYEHEL
>NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein
MTSVILTRRAMLSGGTLLGLGALFAACGQQASNEAAATASAVPSETTSASATASESPSASATPSTVRGYSGGSKAPDGEYRPADKYGPAQNVPKPSAPEEGYNEKSLEGMRKTMDAWILWGNYGTQTGNYSMAFKFMSPTFEDERKAYTGVEDLYKRGGWVIGGINHYLADGNPWSEDGETYFWKAYREWDYETYVESDGSWRKWSNDDKTDDTFKFELKHNGQKWEIMNYEPVDD
>NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase
MAKKTKGKKSGAATAAVALLTETNTPFQMREYEHVEGVTSFGEEAAKNLGASEEQVFKTLLIVHEKDFAVAIVPVSGKLNIKAAAAALGWKSASMCDPKVAERRTGYVVGGISPLGQKTPSPTLLDESAQLFDTIMVSGGKRGLDVELAPDDLLKLTNGKYADIRA
>NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MGNSLPGVGAIAKNWREVLKPEEYAVLREGGTERAFTGEYWNTHTEGVYSCRACGTELFRSDQKFDSHCGWPSFFAPLAEDRVRYLEDTTFGMRRVEVRCAACDSHLGHVFEGEGYPTPTDLRYCINSVCLTLTPAGEAQLGDTPVDEAESAE
>NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D
MSTAAEQNAAGTPQLTLHGIEVPEVVPLEAPSSPIPTLITTESGLRRAAEQLAAASGPVAVDTERAQGIRYGARAFLVQLKREDQLYLIDPEAFKDLRIINDALADAEWVIHAAIQDFPSLDMLGMRPNRLFDTELGARLAGLERVNLGATVEELLGYKLAKKHSKEDWSRRPLPESWLNYALLDVDVLIDLRDALEDLLRQQGKLQYALEEFEYLCKTPVKDPTDQPERWRKTKGRTMLRSVKQLTALRNLWHERDSLARKKDVDAKRLLPDSAIVEAARTMPRNVPAIMSIPGFQTRGLRREGPRWVRAIAAAARGENAVPFTLPSTAPPPLKAWESKRPENLALFTEVRQAIDELSEKLTIPAQNLITTDYVRRLCWEPPARFDEQTLRDALAEYGARSWQTGLVAPVIAPIFARHLG
>NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein
MPAPNGCCRSQKACTSPTASAAVKSNATESNAVDTAVDTAEIESASRVFSRRATLITGAVASGALLASCAEGDSNVTVPEGSVEMGAASAVGVGKAAKLTHGSTTVIVSQPSSGEYKAFSTVCTHQGCQVQVQDSNRIVCPCHGSEYAVADGSVIHGPAEEALTSYPVQVKGGKIFVAHTNKDS

Crispr_ID: NZ_AP014938_5

• CRISPR_ID: NZ_AP014938_5
• CRISPR_location: 112076-112831
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 10 spacers
• Cas_protein_info: cas1,cas2,csb1gr7,csb2gr5,cas3,csb3

Consensus repeat of NZ_AP014938_5

Consensus_repeat	Method
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CRISPRCasFinder

spacers of NZ_AP014938_5

>5.1|112112|36|NZ_AP014938|CRISPRCasFinder
GCCAATACACCATGGGGTCACCATAAAGGTGCGCCA
>5.2|112184|35|NZ_AP014938|CRISPRCasFinder
TGAACCCACGCATTCGTATCCGTGCCCACTAGCCC
>5.3|112255|36|NZ_AP014938|CRISPRCasFinder
CGCGCCGCTGACGGACGATAACGGCAACCCAATCGA
>5.4|112327|38|NZ_AP014938|CRISPRCasFinder
TCGCCGTTGCGCTCAGGGAAATAATATCGGAACACCTC
>5.5|112401|36|NZ_AP014938|CRISPRCasFinder
GTTCAACTTCCACACCACGTAGCTGGTGCATTCGCC
>5.6|112473|35|NZ_AP014938|CRISPRCasFinder
ATGACCTGACCGCCCCTTGCCTGAACCTCGTCCAC
>5.7|112544|34|NZ_AP014938|CRISPRCasFinder
TCCCGTGTAGGGAGGTGGGAGGTCAAGAGCATTG
>5.8|112614|36|NZ_AP014938|CRISPRCasFinder
CATAGCCAGCTCGCCCGTAATCGTGTTAATGTCCAC
>5.9|112686|37|NZ_AP014938|CRISPRCasFinder
TGGAAGAGCGCTACGGTGCAGAGGTGCCGCTAGACTT
>5.10|112759|36|NZ_AP014938|CRISPRCasFinder
CGTTGCCTTGAAGGGTACGCCGTCGGAGGTGACGCC

CRISPR arrays and Neighbor proteins around NZ_AP014938_5

CRISPR arrays

The CRISPR arrays of NZ_AP014938_5

>merge|NZ_AP014938|5|112076-112831|CRISPRCasFinder
GCCTCAATGAATGTCCTTCCAAAAAGGAAGGGAAAAGCCAATACACCATGGGGTCACCATAAAGGTGCGCCAGACTCAATGAAAGTCGCCACCCGAAGGTGGAGAAATTGAACCCACGCATTCGTATCCGTGCCCACTAGCCCGCCTCAATGAAAGCCCTTCCTAAAAGGAAGGGAAATCGCGCCGCTGACGGACGATAACGGCAACCCAATCGAGCCTCAATGAAAGCCCCTCCAAGAAGAAGGGAAAATTCGCCGTTGCGCTCAGGGAAATAATATCGGAACACCTCGCCTCAATGAAAGCCCCTCCAAAAAGGAAGGGAAATGTTCAACTTCCACACCACGTAGCTGGTGCATTCGCCGCCTCAATGAAGGTCCCTACGGAGAGTAGGGAAATGATGACCTGACCGCCCCTTGCCTGAACCTCGTCCACGCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGAAATTCCCGTGTAGGGAGGTGGGAGGTCAAGAGCATTGGCCTCAATGAAAGTCCCTACAAAACTGTAGGGAAATCATAGCCAGCTCGCCCGTAATCGTGTTAATGTCCACGCCTCAATGAAAGTCCCTCCCAAAAGGAAGGGAAATTGGAAGAGCGCTACGGTGCAGAGGTGCCGCTAGACTTGCCTCAATGAAAGCTCCTCCAAAAAGGAAGGGAAATCGTTGCCTTGAAGGGTACGCCGTCGGAGGTGACGCCGCCTCAATGAAAGTCCCAACAAAAAGGTAGGGAAAGG

>NZ_AP014938|5|5|112076-112831|CRISPRCasFinder
GCCTCAATGAATGTCCTTCCAAAAAGGAAGGGAAAA	GCCAATACACCATGGGGTCACCATAAAGGTGCGCCA
GACTCAATGAAAGTCGCCACCCGAAGGTGGAGAAAT	TGAACCCACGCATTCGTATCCGTGCCCACTAGCCC
GCCTCAATGAAAGCCCTTCCTAAAAGGAAGGGAAAT	CGCGCCGCTGACGGACGATAACGGCAACCCAATCGA
GCCTCAATGAAAGCCCCTCCAAGAAGAAGGGAAAAT	TCGCCGTTGCGCTCAGGGAAATAATATCGGAACACCTC
GCCTCAATGAAAGCCCCTCCAAAAAGGAAGGGAAAT	GTTCAACTTCCACACCACGTAGCTGGTGCATTCGCC
GCCTCAATGAAGGTCCCTACGGAGAGTAGGGAAATG	ATGACCTGACCGCCCCTTGCCTGAACCTCGTCCAC
GCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGAAAT	TCCCGTGTAGGGAGGTGGGAGGTCAAGAGCATTG
GCCTCAATGAAAGTCCCTACAAAACTGTAGGGAAAT	CATAGCCAGCTCGCCCGTAATCGTGTTAATGTCCAC
GCCTCAATGAAAGTCCCTCCCAAAAGGAAGGGAAAT	TGGAAGAGCGCTACGGTGCAGAGGTGCCGCTAGACTT
GCCTCAATGAAAGCTCCTCCAAAAAGGAAGGGAAAT	CGTTGCCTTGAAGGGTACGCCGTCGGAGGTGACGCC
GCCTCAATGAAAGTCCCAACAAAAAGGTAGGGAAAGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl|CDD|377432
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl|CDD|237976
NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl|CDD|274235
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	unknown	unknown	gnl|CDD|224402
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	unknown	unknown	gnl|CDD|237001
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	unknown	unknown	gnl|CDD|271320
NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein	unknown	unknown	gnl|CDD|239550
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl|CDD|378223
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl|CDD|376583
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	unknown	unknown	gnl|CDD|236090
NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D	unknown	unknown	gnl|CDD|223426
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl|CDD|274005
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	unknown	unknown	gnl|CDD|237000
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	unknown	unknown	gnl|CDD|235906
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	gnl|CDD|187733

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	7.6e-89	292.6	0.0
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	6.1e-17	56.9	0.0
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	1.9e-88	291.9	1.5
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	3.6e-80	265.0	8.6
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	4.6e-21	69.6	0.0
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	2.5e-146	481.9	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	gnl|CDD|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	1.03457e-10
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	gnl|CDD|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	2.01789e-68
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	gnl|CDD|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0.00203925
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.62042e-84
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000981202
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.62642e-18
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	gnl|CDD|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	1.41217e-14
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.08474e-104
NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein	gnl|CDD|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.25059e-23
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	gnl|CDD|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.1891e-25
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl|CDD|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	7.1838e-77
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	gnl|CDD|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	1.98377e-64
NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D	gnl|CDD|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	1.21483e-67
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl|CDD|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	4.70631e-70
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	gnl|CDD|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	0.00135953
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	gnl|CDD|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00420809
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	gnl|CDD|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	2.98519e-167

Protein sequences

>NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1
MSTPYSAGDELPISLVMHTVYCPRRAWIESNGEKTDTSQMQEGQSAHKRVDDPKTSRGTQQRAVTISSTRLGLTGRCDALEPQEDGSTRIIEYKATPVRRNASVTPAHRVQLALQKICLEEAGETVSECAVHFTNHNKTVPVDISDEDIRTAEEYVHTTRALIDNPTAPQPLEDSPRCSWCSHISVCLPDESHGKENITRVVASNPDSQVAHLTTQGSRATVQQGRLIVQHLGETISSVPLERVHSLVVHGNIDVSSALLRELMWRNCTIIWCSSTGRVYGWSQPGTGPNGLARVQQHVLSAQGHLPIAAAMIASKISNQATLLRRNGHAADVCRTMRDIQKHTPQATSIPEMLGLEGEAASLYFGNFATMLKEDVLTELGWTWTGRQGRGANDPINILLNYAYGMLSSECIRAILTCGLDPHAGFLHSSSRNKPALALDLMEEFRAVIADSVVVSLINRKQVKASTFTAVGGSYRLTPEGRKTVIAAFEKRMATEITHPTYGYSVTWRRAIEVQARMLLGVINGTTREYTGVTVR
>NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2
MRDDARRTLIAYDVPSDRRRAKLAKLILSYGDRIQYSVFIVDAAPAKVRRIKDEVQDLIDPDEDSVLFCDLGLLARLDEPTFSYIGRAREVTESDALIL
>NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein
MLTIGADPISQATSMATGVIVNLIAFVLIEMVLKPILARVGYLPEPGIPRNAHSEEMLGDGAAISALPLNIGEESAHIHVSVMSHGGTVITVLTPHSHVTLHVSGDVQKPPTTTESQ
>NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7
MSQTTITLADLIENVKLGGGSVITSITELEPAAGPHASVAPAKFVDGKGNDSKSVFAYETRYIVEEVQNPDESENEDESKEPEKDVKGQPQKVVLIDSKQSELNRAEAAIEQGRQYGDEAVVKIPRAVVTYQTENGPVEYSDMELSHRIFDGHFRAGTIDDKLITENDQYRALRNSTPADMSALLNTAPAALLFGAWDSTRKSHQVRLRSALVGEIIGVLADQEPGAEHRQARRGGARVDAVAASVKLAPKDMESLVNDQEAELSPGNVGARRNDIKKAKADARISASTLGLGSIPPTLEETGAVACHRIIRSWVLSLATLRQLRFGQDETKNVAARALLAALGLNAIARAERELYIRANCDLIESAAPVVTLDQRFGKKKTFAPLTVEHTDQLLLEAIENAKKAGVADWNGQTFNVEGNPIIIKNATAEDAE
>NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MTNLGILARFPLGVYQGHKADGSPDAFPDPARLQAALLSAAAQGPHAIIENGQLAPSDESLKALKWLEENPPTGLQLPDMCPVYRSPNKMSRFMYREVAYSEKDGRQTERRAVSDGWAVSDTIGWQYDKVPADIAETITQLCGEVPSLGEASSLTALYTGDVEPTHTIDTKSGPFEAGGMPVRVPVPGRVDALMRAHAEAYPVKVPTKAGDKTAASDTMRPSPVPTAGLGSIKYQPVEAETSTSPWEYLWLLEVDGEELKSEQYVKACSLLHKALVAAAGFGAPSLITGRYPKGHKPANSLALQYLPARYLPDYLRREVKSKGVLLVLVPASAPTDEAVELGIALRSVETLYAQDFPRLTVKLRQKRLPAQGFWDAPKTGYKRLWRTLSAAVPESRVFNRPKKTETKAWTFADAALLSMAYVWRDSFEAPEAETSRERIRSLRDQVAKKAEAKVLEAHRVTQNPAAYAYKLPRTLPAEPWRGVVDLGNLATDTTLVAIGQSRHMGGGLLVPFDVPTEEYDRRKKEEKHD
>NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MTSPATALPSITRDEFGDFFAALNGGYDPFSWQEEVLDHICEHGVWPERINAPTGSGKSSVVDIHLFANALAAVGAAPRVPRRLCVTVGRRALVDSQATRADKILGRMGKALTDGSGEPDILRRVAEALHSFQTRNDEKGSKPFETGHIRGELSNRNLPVTDISACAIIAATPDMYGSRALFRGYGSTKAARPRETALLTMDTVMVLDEAHMNRQLLHTTQRIAELQKYEADLGVPTLQVVETTATPSTEDSESTTLGVDIEALDTPNDKELHRRVYSHKELVLHPIDKWDGKPGNSPTVNAAVDAIMERLAHREAGESSKKAYTVGCIVNHVRTAISIKEALAKNKALGKDEVQLLVGRMRPYDLKNLQAEHSGLFITEGDESVKVVVATQTLEVGIDVDFADLVTELAPASSLAQRFGRVNRLGHRTDSKVVVIEPASSDLVKKDAPPYKAVDLSNAYAWLEALNGAENPSVNPAAMVKNPPVQSSPERLLYQRPEWPDLLEFSRTDENPYDEPDLDLWLHDSLDAETAMGGVIVRDNLPSNTSAAMEILKTSYFAPSDRETFPANLKILQEILDYQDEHGVKPRKFLYRQGEISLWQDADHGAESSQSLAPGDVLLLDMGSVPFTNQGIAVTQRELPSKKDELKAVPFLDDAELYVAELYVYEKCADREKHFREYLGLSPEEAAELLDSQSTDGKKMIASELSTEAEGGQEVIAWYAEVTGKESVEGSDIAQELVLAAPVLLDDHQNDVAERTRQLAENLGLAPEFSEALELAAKYHDEGKRDLRFQQMLGADPDAEALAKSGHRSVAEAYRARSRSALPRGWRHEQLSALMVAASPEKVGEHRDLVLRIIGCSHGHGRFSFAHDAGFLLKEGYLPEGTDYEALKEQATRLFNVGYWDNLMEQTSRTYGPYATAYLEAVERAADAQISREGH
>NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase
MAMLTIAGDYTSALTHFALYGLSLMVEQKHPGAVTVGWSQEGQPRAQMHAEGVSEEEIAECVHSYVSSLAAEDSWVNVDQSYGAGKEAAVFSPFSPRFRGIDAEKYPDDWASHQKTRQAHLDALMERDDLLSLLWISGLGEPSYWRFEAKAPRPDHGASRWEMKTRNKGQEFVKDRLRLMCADLATWEPSAMLSGITGQTLYDSLDKKPDSRTGTGFTVPQPTDTALAFCALVGIANFPVIHQVHRIGVTPGAYPYNALHPRLMVLPVSSGKVTPARLRTVLRSHPYRRVVDEVGKAMERGSLSSDIFVSELVDEKAILREKGVQAFVAFPIVKVGSDSAPERQVLKGSAIPMG
>NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter
MEAKEFSEKALLFFAKSKYADLFGVALVIAIAIASGYLSTNLAKYVDWGPITSFIPLGVISVINVGISMMSTRLTGRLSNVGNVLGIINTALSGAIDYILGNKAAIITYPVTFIVYTFAIRRWQNSERGKALEPPTGTKGQLIIGGIVAGSFAFSLVTNYIGYGGKTSFLFWITTVVFGLSLSANILNALKLTMQWQFWFLYNTVQCIKALTQGNFANVGKYIFYIINSVAALLLWTRNGTASKGAVAAVA
>NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein
MPLLTHRLSRRFFVKGASAAAAAGALTLQAQAAQADEAPANLAPATEETKGPRLVIQRATITETGMTVNYTAHGLREFLTEGTTLTVRHGYVRNDSFETLRSWPLTPEFDGDADSFSGSDQFPIELMQGEGVDHALQLDICSDPWGQEITHQIAARIPLAETKILKTSFEDVPDNHPFAEDIRMANQKKWLMPNPQTGAFEPDRPVTREELIALLNHAAGHAGVSENSDVAPFADAAGRPTANALHWARDRKITEPLTGGDKIDPTAPVSHEELAAVLFQYNAEVQLTEMKEGTGSRFRDVLGAGTLHRYVAWAGANDIVLDASGVFNPTAPTTRAELARFIRRYKLQNLLFTDFSYVS
>NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase
MNLASSKAFKGLAVGSLALAISGVAAIPASFAAESTRAASQSSEARTITDKAMAKITQGLPGQFQVAYSKKTNKIWVAGTADRDEHVSTIARIDANSLKIEAVAELPIIKGDSGYSYEGAYGITVDDEEGTVWVTSTRDNSVAVYDQATMKQLWTNAGLSKDDPNWIEHPREVRVDHESGKAFVTGRFFVSAIDLKTKKVEKIQLEGAPDGGTRYISMNILVDGGKLYVPERTGGKLFVIDTKTFKVEKTISVKGDKDGEVRPSDVAIDHSQNEIYVSSQGVKGENSGVSVYDATTYEFKKFIPFGTQALSLDNDEANDLVYVSDFGTGKVGVIDGGAADKLIAEVTMNGGKANDLVVLPNGSVVAVDKQAGATATVPYVLDGTTGTVSTSNKVTSKPSKDKQGNEVPAKTSDIQANSILKFKVTATAGDNSEVKQVTPETREFQGYPATATKTKATDSTAPSTEAHRTVDANGSVANIIQGLPGQFQVGYSKKNHKLFVPTVGARGGLASSLARVDADTLQTEAFAELPVKKNDKGQYGYTSAYGVTVDDVDGTVWVTNTIDNSVAVYDQQTLKLIWTNEGVKEGDPNWIEHPRSVLVDHESGKAFVTGRFFVSAIDLKTKQVEKIQLEGAPDGGTRYVSMNLFLDGGKLYVPERTGGKLFVVDTKTFKVEKTIQTQGEDSTVEVRPSDVAVDHSLNEIYVSSQGVKGVNSGISVYDLTTGEFKKFVKFGTQALALEHDEDRDLVYVTDFGTGKVAVFDGRADEVIGEVEMNGAAANDVTLLKDGSVLVLDKKDRDEKVTLPYVLNGTTGEITTASEYTTLPTKDRQGNDVPASVQQLKANSILKFKVGVKDTDASAAPVGITPTSLQFAGYPTVTGVKAEESKPADPKPADPKPADPKPEDKKAEDKKAEDAKSEDKKSDAKSENTAEAKDQTSKDQASQSDSKSDAKTGAQDSKSAPDAVKADKSGSAVKNGGSDSSTGGSSVAKSEAGSSQAGSSRSALANTGANAVMPLVAFASVALIAGAALVMRRRKA
>NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE
MPTTTVHLTDRIPRVSADELLAGFRPSERFGEVSFDSYIPDPNQPSQAEAVQKLKDFGDKINGGGAGAGFFGRLFGGKKKDSTKAGLYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSSYKLVCIDEFELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALGEGRFAAEDFKREIQVLASQFEVHRVDGEDFRHRGLPAAPEPVADDAFDAKVEEVFGGQTVGVDNFADLVEHLAKVHPSRYRQLIDGLDGIAWRDVHPITEQSVALRFVVLADRLYDKDLPIVSSGVPFDKVFTEEMLAGGYQKKYFRAVSRLTALAREGMLGEEAER
>NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein
MDSTIFTRRTLLGSGALVGLGALLAACGQQANNEAAATASATPTETTSASAAASDATSASATPKPVVTRGYSGQSKAPDGEYRKADGYGPAQNVPKPRNEPAQYPETEEGLHHMMEDWVIAHNYAIQTGDCSYAFKYVTEDSEEYGFYVYIEELYDNGGWVINGLDSYQAESALIYDDSQKIYRMKVRRFWTTAMYVESNGKMTRKANTNTDDDSFYFLFNYSNGYWKITDTKYENDL
>NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein
MKKINSFSLTFCVALTLFTHNLHTLPSSGSECTTKNDKGHCIKTSKNKRYPESERSGDTSQRNTQNTVAVSSDPSASEASVAKMAQEWEKEHPEQLDGAKQQYLASSAEARKAGDAECYTKGDRRPGHYVIGSLPLGDEANRIPNHVGGRYCVPNDAKTLTSNDPAQPKGPSPEEMLQEIEDQFAKTDIQAPVLKQSYNLGTGLSEDNPNVYKGDQINFYVDAPTARWEGDLMIGHVEMESYPTQMTIQYGNGDEGSFYTMGKPVSRARGKESRKTATSYAYQRSGNFHAYATVSYSGRFRVNGGDWQALDVVLTKETVDPLLVRVWWTDVGRVAGDCSYDDTRWGCKNDPTMGKKDNPNPRLRKADIRTGQRWHLNDNGDGDTEYSLHRDWPDM
>NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein
MTSVFLTRRAVLSGGALLGMSALLAACGQQAANEASVSASSSATPSETASASATATESASASATPSPRVTRGYSGNSKAPDGEYRKADGYGPAQNVPEPRKEPAQYPETEDGIDHMMQDWLTAHNYAIQTGDCAPVFRYVEKTSKEYPFYEYIDDLYKRGGWVVDGLDAYRAEGDLIYDDQQKFYRMKVRRFWTTVMYVDSNGKITKQANTNKDDDKFNFFFSYSNGYWKIIGSGYSDTPENNEE
>NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein
MTSVFLTRRAMLSGGALLGLSALFAACGQQANNEAAATASAAPSETALASAAVSEAATSTPSPVITRGYSGGSKAPDGEYRKADGKGPAQNVPEPRKEPAQYPETEEGLMKMMQDWIVAHNYGIQTGDCSYAFKYVSEESEEYGFYKYIETLYKNGGWAVNSLDSYQSESTLFYDESQKIYRMKVHRIWSTEIYIESNGDITRRANTDTSDDTFYFLYTYSDGYWKIINSKYEHEL
>NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein
MTSVILTRRAMLSGGTLLGLGALFAACGQQASNEAAATASAVPSETTSASATASESPSASATPSTVRGYSGGSKAPDGEYRPADKYGPAQNVPKPSAPEEGYNEKSLEGMRKTMDAWILWGNYGTQTGNYSMAFKFMSPTFEDERKAYTGVEDLYKRGGWVIGGINHYLADGNPWSEDGETYFWKAYREWDYETYVESDGSWRKWSNDDKTDDTFKFELKHNGQKWEIMNYEPVDD
>NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase
MAKKTKGKKSGAATAAVALLTETNTPFQMREYEHVEGVTSFGEEAAKNLGASEEQVFKTLLIVHEKDFAVAIVPVSGKLNIKAAAAALGWKSASMCDPKVAERRTGYVVGGISPLGQKTPSPTLLDESAQLFDTIMVSGGKRGLDVELAPDDLLKLTNGKYADIRA
>NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MGNSLPGVGAIAKNWREVLKPEEYAVLREGGTERAFTGEYWNTHTEGVYSCRACGTELFRSDQKFDSHCGWPSFFAPLAEDRVRYLEDTTFGMRRVEVRCAACDSHLGHVFEGEGYPTPTDLRYCINSVCLTLTPAGEAQLGDTPVDEAESAE
>NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D
MSTAAEQNAAGTPQLTLHGIEVPEVVPLEAPSSPIPTLITTESGLRRAAEQLAAASGPVAVDTERAQGIRYGARAFLVQLKREDQLYLIDPEAFKDLRIINDALADAEWVIHAAIQDFPSLDMLGMRPNRLFDTELGARLAGLERVNLGATVEELLGYKLAKKHSKEDWSRRPLPESWLNYALLDVDVLIDLRDALEDLLRQQGKLQYALEEFEYLCKTPVKDPTDQPERWRKTKGRTMLRSVKQLTALRNLWHERDSLARKKDVDAKRLLPDSAIVEAARTMPRNVPAIMSIPGFQTRGLRREGPRWVRAIAAAARGENAVPFTLPSTAPPPLKAWESKRPENLALFTEVRQAIDELSEKLTIPAQNLITTDYVRRLCWEPPARFDEQTLRDALAEYGARSWQTGLVAPVIAPIFARHLG
>NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein
MPAPNGCCRSQKACTSPTASAAVKSNATESNAVDTAVDTAEIESASRVFSRRATLITGAVASGALLASCAEGDSNVTVPEGSVEMGAASAVGVGKAAKLTHGSTTVIVSQPSSGEYKAFSTVCTHQGCQVQVQDSNRIVCPCHGSEYAVADGSVIHGPAEEALTSYPVQVKGGKIFVAHTNKDS

Crispr_ID: NZ_AP014938_6

• CRISPR_ID: NZ_AP014938_6
• CRISPR_location: 113091-113490
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 5 spacers
• Cas_protein_info: cas1,cas2,csb1gr7,csb2gr5,cas3,csb3

Consensus repeat of NZ_AP014938_6

Consensus_repeat	Method
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CRISPRCasFinder

spacers of NZ_AP014938_6

>6.1|113127|37|NZ_AP014938|CRISPRCasFinder
CACCGGTGCAGTACATTTGCCACTGAACCTGGTCGCG
>6.2|113200|36|NZ_AP014938|CRISPRCasFinder
GATTCCAGGGCGTGAGGGAGTGCCGAGGCTGAGCCC
>6.3|113272|36|NZ_AP014938|CRISPRCasFinder
CGACCTCTCGGGTAGCTTCGTCCGTAAAGCCTACAC
>6.4|113344|39|NZ_AP014938|CRISPRCasFinder
GGCCTTGCCTTCCAGCAGCCAGCTAGGGCCAGACATGCG
>6.5|113419|35|NZ_AP014938|CRISPRCasFinder
CGGCGAAAGGTCGCGGCCTCGATAAGCTGTGCCCG

CRISPR arrays and Neighbor proteins around NZ_AP014938_6

CRISPR arrays

The CRISPR arrays of NZ_AP014938_6

>merge|NZ_AP014938|6|113091-113490|CRISPRCasFinder
GCCTCAATGAAAGCCCATCCAAAAAGGAAGGGAAATCACCGGTGCAGTACATTTGCCACTGAACCTGGTCGCGGCCTCAATGAAAGCCCCTCCAAAAAGGAAAGAAAATGATTCCAGGGCGTGAGGGAGTGCCGAGGCTGAGCCCGCCTCGATGAAAGCCCTCCCAAATAGGAAGGGAAATCGACCTCTCGGGTAGCTTCGTCCGTAAAGCCTACACACCTCAATGAAAGCCCCTCCAAAAAGGAAGGGAAATGGCCTTGCCTTCCAGCAGCCAGCTAGGGCCAGACATGCGGCCTCAATGAAAGCCCTTCCTAAAAGGAAGGGAAATCGGCGAAAGGTCGCGGCCTCGATAAGCTGTGCCCGGCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGAAATT

>NZ_AP014938|6|6|113091-113490|CRISPRCasFinder
GCCTCAATGAAAGCCCATCCAAAAAGGAAGGGAAAT	CACCGGTGCAGTACATTTGCCACTGAACCTGGTCGCG
GCCTCAATGAAAGCCCCTCCAAAAAGGAAAGAAAAT	GATTCCAGGGCGTGAGGGAGTGCCGAGGCTGAGCCC
GCCTCGATGAAAGCCCTCCCAAATAGGAAGGGAAAT	CGACCTCTCGGGTAGCTTCGTCCGTAAAGCCTACAC
ACCTCAATGAAAGCCCCTCCAAAAAGGAAGGGAAAT	GGCCTTGCCTTCCAGCAGCCAGCTAGGGCCAGACATGCG
GCCTCAATGAAAGCCCTTCCTAAAAGGAAGGGAAAT	CGGCGAAAGGTCGCGGCCTCGATAAGCTGTGCCCG
GCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGAAATT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl|CDD|377432
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl|CDD|237976
NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl|CDD|274235
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	unknown	unknown	gnl|CDD|224402
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	unknown	unknown	gnl|CDD|237001
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	unknown	unknown	gnl|CDD|271320
NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein	unknown	unknown	gnl|CDD|239550
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl|CDD|378223
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl|CDD|376583
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	unknown	unknown	gnl|CDD|236090
NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D	unknown	unknown	gnl|CDD|223426
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl|CDD|274005
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	unknown	unknown	gnl|CDD|237000
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	unknown	unknown	gnl|CDD|235906
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	gnl|CDD|187733

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	7.6e-89	292.6	0.0
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	6.1e-17	56.9	0.0
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	1.9e-88	291.9	1.5
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	3.6e-80	265.0	8.6
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	4.6e-21	69.6	0.0
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	2.5e-146	481.9	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	gnl|CDD|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	1.03457e-10
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	gnl|CDD|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	2.01789e-68
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	gnl|CDD|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0.00203925
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.62042e-84
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000981202
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.62642e-18
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	gnl|CDD|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	1.41217e-14
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.08474e-104
NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein	gnl|CDD|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.25059e-23
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	gnl|CDD|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.1891e-25
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl|CDD|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	7.1838e-77
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	gnl|CDD|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	1.98377e-64
NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D	gnl|CDD|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	1.21483e-67
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl|CDD|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	4.70631e-70
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	gnl|CDD|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	0.00135953
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	gnl|CDD|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00420809
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	gnl|CDD|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	2.98519e-167

Protein sequences

>NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1
MSTPYSAGDELPISLVMHTVYCPRRAWIESNGEKTDTSQMQEGQSAHKRVDDPKTSRGTQQRAVTISSTRLGLTGRCDALEPQEDGSTRIIEYKATPVRRNASVTPAHRVQLALQKICLEEAGETVSECAVHFTNHNKTVPVDISDEDIRTAEEYVHTTRALIDNPTAPQPLEDSPRCSWCSHISVCLPDESHGKENITRVVASNPDSQVAHLTTQGSRATVQQGRLIVQHLGETISSVPLERVHSLVVHGNIDVSSALLRELMWRNCTIIWCSSTGRVYGWSQPGTGPNGLARVQQHVLSAQGHLPIAAAMIASKISNQATLLRRNGHAADVCRTMRDIQKHTPQATSIPEMLGLEGEAASLYFGNFATMLKEDVLTELGWTWTGRQGRGANDPINILLNYAYGMLSSECIRAILTCGLDPHAGFLHSSSRNKPALALDLMEEFRAVIADSVVVSLINRKQVKASTFTAVGGSYRLTPEGRKTVIAAFEKRMATEITHPTYGYSVTWRRAIEVQARMLLGVINGTTREYTGVTVR
>NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2
MRDDARRTLIAYDVPSDRRRAKLAKLILSYGDRIQYSVFIVDAAPAKVRRIKDEVQDLIDPDEDSVLFCDLGLLARLDEPTFSYIGRAREVTESDALIL
>NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein
MLTIGADPISQATSMATGVIVNLIAFVLIEMVLKPILARVGYLPEPGIPRNAHSEEMLGDGAAISALPLNIGEESAHIHVSVMSHGGTVITVLTPHSHVTLHVSGDVQKPPTTTESQ
>NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7
MSQTTITLADLIENVKLGGGSVITSITELEPAAGPHASVAPAKFVDGKGNDSKSVFAYETRYIVEEVQNPDESENEDESKEPEKDVKGQPQKVVLIDSKQSELNRAEAAIEQGRQYGDEAVVKIPRAVVTYQTENGPVEYSDMELSHRIFDGHFRAGTIDDKLITENDQYRALRNSTPADMSALLNTAPAALLFGAWDSTRKSHQVRLRSALVGEIIGVLADQEPGAEHRQARRGGARVDAVAASVKLAPKDMESLVNDQEAELSPGNVGARRNDIKKAKADARISASTLGLGSIPPTLEETGAVACHRIIRSWVLSLATLRQLRFGQDETKNVAARALLAALGLNAIARAERELYIRANCDLIESAAPVVTLDQRFGKKKTFAPLTVEHTDQLLLEAIENAKKAGVADWNGQTFNVEGNPIIIKNATAEDAE
>NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MTNLGILARFPLGVYQGHKADGSPDAFPDPARLQAALLSAAAQGPHAIIENGQLAPSDESLKALKWLEENPPTGLQLPDMCPVYRSPNKMSRFMYREVAYSEKDGRQTERRAVSDGWAVSDTIGWQYDKVPADIAETITQLCGEVPSLGEASSLTALYTGDVEPTHTIDTKSGPFEAGGMPVRVPVPGRVDALMRAHAEAYPVKVPTKAGDKTAASDTMRPSPVPTAGLGSIKYQPVEAETSTSPWEYLWLLEVDGEELKSEQYVKACSLLHKALVAAAGFGAPSLITGRYPKGHKPANSLALQYLPARYLPDYLRREVKSKGVLLVLVPASAPTDEAVELGIALRSVETLYAQDFPRLTVKLRQKRLPAQGFWDAPKTGYKRLWRTLSAAVPESRVFNRPKKTETKAWTFADAALLSMAYVWRDSFEAPEAETSRERIRSLRDQVAKKAEAKVLEAHRVTQNPAAYAYKLPRTLPAEPWRGVVDLGNLATDTTLVAIGQSRHMGGGLLVPFDVPTEEYDRRKKEEKHD
>NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MTSPATALPSITRDEFGDFFAALNGGYDPFSWQEEVLDHICEHGVWPERINAPTGSGKSSVVDIHLFANALAAVGAAPRVPRRLCVTVGRRALVDSQATRADKILGRMGKALTDGSGEPDILRRVAEALHSFQTRNDEKGSKPFETGHIRGELSNRNLPVTDISACAIIAATPDMYGSRALFRGYGSTKAARPRETALLTMDTVMVLDEAHMNRQLLHTTQRIAELQKYEADLGVPTLQVVETTATPSTEDSESTTLGVDIEALDTPNDKELHRRVYSHKELVLHPIDKWDGKPGNSPTVNAAVDAIMERLAHREAGESSKKAYTVGCIVNHVRTAISIKEALAKNKALGKDEVQLLVGRMRPYDLKNLQAEHSGLFITEGDESVKVVVATQTLEVGIDVDFADLVTELAPASSLAQRFGRVNRLGHRTDSKVVVIEPASSDLVKKDAPPYKAVDLSNAYAWLEALNGAENPSVNPAAMVKNPPVQSSPERLLYQRPEWPDLLEFSRTDENPYDEPDLDLWLHDSLDAETAMGGVIVRDNLPSNTSAAMEILKTSYFAPSDRETFPANLKILQEILDYQDEHGVKPRKFLYRQGEISLWQDADHGAESSQSLAPGDVLLLDMGSVPFTNQGIAVTQRELPSKKDELKAVPFLDDAELYVAELYVYEKCADREKHFREYLGLSPEEAAELLDSQSTDGKKMIASELSTEAEGGQEVIAWYAEVTGKESVEGSDIAQELVLAAPVLLDDHQNDVAERTRQLAENLGLAPEFSEALELAAKYHDEGKRDLRFQQMLGADPDAEALAKSGHRSVAEAYRARSRSALPRGWRHEQLSALMVAASPEKVGEHRDLVLRIIGCSHGHGRFSFAHDAGFLLKEGYLPEGTDYEALKEQATRLFNVGYWDNLMEQTSRTYGPYATAYLEAVERAADAQISREGH
>NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase
MAMLTIAGDYTSALTHFALYGLSLMVEQKHPGAVTVGWSQEGQPRAQMHAEGVSEEEIAECVHSYVSSLAAEDSWVNVDQSYGAGKEAAVFSPFSPRFRGIDAEKYPDDWASHQKTRQAHLDALMERDDLLSLLWISGLGEPSYWRFEAKAPRPDHGASRWEMKTRNKGQEFVKDRLRLMCADLATWEPSAMLSGITGQTLYDSLDKKPDSRTGTGFTVPQPTDTALAFCALVGIANFPVIHQVHRIGVTPGAYPYNALHPRLMVLPVSSGKVTPARLRTVLRSHPYRRVVDEVGKAMERGSLSSDIFVSELVDEKAILREKGVQAFVAFPIVKVGSDSAPERQVLKGSAIPMG
>NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter
MEAKEFSEKALLFFAKSKYADLFGVALVIAIAIASGYLSTNLAKYVDWGPITSFIPLGVISVINVGISMMSTRLTGRLSNVGNVLGIINTALSGAIDYILGNKAAIITYPVTFIVYTFAIRRWQNSERGKALEPPTGTKGQLIIGGIVAGSFAFSLVTNYIGYGGKTSFLFWITTVVFGLSLSANILNALKLTMQWQFWFLYNTVQCIKALTQGNFANVGKYIFYIINSVAALLLWTRNGTASKGAVAAVA
>NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein
MPLLTHRLSRRFFVKGASAAAAAGALTLQAQAAQADEAPANLAPATEETKGPRLVIQRATITETGMTVNYTAHGLREFLTEGTTLTVRHGYVRNDSFETLRSWPLTPEFDGDADSFSGSDQFPIELMQGEGVDHALQLDICSDPWGQEITHQIAARIPLAETKILKTSFEDVPDNHPFAEDIRMANQKKWLMPNPQTGAFEPDRPVTREELIALLNHAAGHAGVSENSDVAPFADAAGRPTANALHWARDRKITEPLTGGDKIDPTAPVSHEELAAVLFQYNAEVQLTEMKEGTGSRFRDVLGAGTLHRYVAWAGANDIVLDASGVFNPTAPTTRAELARFIRRYKLQNLLFTDFSYVS
>NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase
MNLASSKAFKGLAVGSLALAISGVAAIPASFAAESTRAASQSSEARTITDKAMAKITQGLPGQFQVAYSKKTNKIWVAGTADRDEHVSTIARIDANSLKIEAVAELPIIKGDSGYSYEGAYGITVDDEEGTVWVTSTRDNSVAVYDQATMKQLWTNAGLSKDDPNWIEHPREVRVDHESGKAFVTGRFFVSAIDLKTKKVEKIQLEGAPDGGTRYISMNILVDGGKLYVPERTGGKLFVIDTKTFKVEKTISVKGDKDGEVRPSDVAIDHSQNEIYVSSQGVKGENSGVSVYDATTYEFKKFIPFGTQALSLDNDEANDLVYVSDFGTGKVGVIDGGAADKLIAEVTMNGGKANDLVVLPNGSVVAVDKQAGATATVPYVLDGTTGTVSTSNKVTSKPSKDKQGNEVPAKTSDIQANSILKFKVTATAGDNSEVKQVTPETREFQGYPATATKTKATDSTAPSTEAHRTVDANGSVANIIQGLPGQFQVGYSKKNHKLFVPTVGARGGLASSLARVDADTLQTEAFAELPVKKNDKGQYGYTSAYGVTVDDVDGTVWVTNTIDNSVAVYDQQTLKLIWTNEGVKEGDPNWIEHPRSVLVDHESGKAFVTGRFFVSAIDLKTKQVEKIQLEGAPDGGTRYVSMNLFLDGGKLYVPERTGGKLFVVDTKTFKVEKTIQTQGEDSTVEVRPSDVAVDHSLNEIYVSSQGVKGVNSGISVYDLTTGEFKKFVKFGTQALALEHDEDRDLVYVTDFGTGKVAVFDGRADEVIGEVEMNGAAANDVTLLKDGSVLVLDKKDRDEKVTLPYVLNGTTGEITTASEYTTLPTKDRQGNDVPASVQQLKANSILKFKVGVKDTDASAAPVGITPTSLQFAGYPTVTGVKAEESKPADPKPADPKPADPKPEDKKAEDKKAEDAKSEDKKSDAKSENTAEAKDQTSKDQASQSDSKSDAKTGAQDSKSAPDAVKADKSGSAVKNGGSDSSTGGSSVAKSEAGSSQAGSSRSALANTGANAVMPLVAFASVALIAGAALVMRRRKA
>NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE
MPTTTVHLTDRIPRVSADELLAGFRPSERFGEVSFDSYIPDPNQPSQAEAVQKLKDFGDKINGGGAGAGFFGRLFGGKKKDSTKAGLYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSSYKLVCIDEFELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALGEGRFAAEDFKREIQVLASQFEVHRVDGEDFRHRGLPAAPEPVADDAFDAKVEEVFGGQTVGVDNFADLVEHLAKVHPSRYRQLIDGLDGIAWRDVHPITEQSVALRFVVLADRLYDKDLPIVSSGVPFDKVFTEEMLAGGYQKKYFRAVSRLTALAREGMLGEEAER
>NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein
MDSTIFTRRTLLGSGALVGLGALLAACGQQANNEAAATASATPTETTSASAAASDATSASATPKPVVTRGYSGQSKAPDGEYRKADGYGPAQNVPKPRNEPAQYPETEEGLHHMMEDWVIAHNYAIQTGDCSYAFKYVTEDSEEYGFYVYIEELYDNGGWVINGLDSYQAESALIYDDSQKIYRMKVRRFWTTAMYVESNGKMTRKANTNTDDDSFYFLFNYSNGYWKITDTKYENDL
>NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein
MKKINSFSLTFCVALTLFTHNLHTLPSSGSECTTKNDKGHCIKTSKNKRYPESERSGDTSQRNTQNTVAVSSDPSASEASVAKMAQEWEKEHPEQLDGAKQQYLASSAEARKAGDAECYTKGDRRPGHYVIGSLPLGDEANRIPNHVGGRYCVPNDAKTLTSNDPAQPKGPSPEEMLQEIEDQFAKTDIQAPVLKQSYNLGTGLSEDNPNVYKGDQINFYVDAPTARWEGDLMIGHVEMESYPTQMTIQYGNGDEGSFYTMGKPVSRARGKESRKTATSYAYQRSGNFHAYATVSYSGRFRVNGGDWQALDVVLTKETVDPLLVRVWWTDVGRVAGDCSYDDTRWGCKNDPTMGKKDNPNPRLRKADIRTGQRWHLNDNGDGDTEYSLHRDWPDM
>NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein
MTSVFLTRRAVLSGGALLGMSALLAACGQQAANEASVSASSSATPSETASASATATESASASATPSPRVTRGYSGNSKAPDGEYRKADGYGPAQNVPEPRKEPAQYPETEDGIDHMMQDWLTAHNYAIQTGDCAPVFRYVEKTSKEYPFYEYIDDLYKRGGWVVDGLDAYRAEGDLIYDDQQKFYRMKVRRFWTTVMYVDSNGKITKQANTNKDDDKFNFFFSYSNGYWKIIGSGYSDTPENNEE
>NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein
MTSVFLTRRAMLSGGALLGLSALFAACGQQANNEAAATASAAPSETALASAAVSEAATSTPSPVITRGYSGGSKAPDGEYRKADGKGPAQNVPEPRKEPAQYPETEEGLMKMMQDWIVAHNYGIQTGDCSYAFKYVSEESEEYGFYKYIETLYKNGGWAVNSLDSYQSESTLFYDESQKIYRMKVHRIWSTEIYIESNGDITRRANTDTSDDTFYFLYTYSDGYWKIINSKYEHEL
>NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein
MTSVILTRRAMLSGGTLLGLGALFAACGQQASNEAAATASAVPSETTSASATASESPSASATPSTVRGYSGGSKAPDGEYRPADKYGPAQNVPKPSAPEEGYNEKSLEGMRKTMDAWILWGNYGTQTGNYSMAFKFMSPTFEDERKAYTGVEDLYKRGGWVIGGINHYLADGNPWSEDGETYFWKAYREWDYETYVESDGSWRKWSNDDKTDDTFKFELKHNGQKWEIMNYEPVDD
>NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase
MAKKTKGKKSGAATAAVALLTETNTPFQMREYEHVEGVTSFGEEAAKNLGASEEQVFKTLLIVHEKDFAVAIVPVSGKLNIKAAAAALGWKSASMCDPKVAERRTGYVVGGISPLGQKTPSPTLLDESAQLFDTIMVSGGKRGLDVELAPDDLLKLTNGKYADIRA
>NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MGNSLPGVGAIAKNWREVLKPEEYAVLREGGTERAFTGEYWNTHTEGVYSCRACGTELFRSDQKFDSHCGWPSFFAPLAEDRVRYLEDTTFGMRRVEVRCAACDSHLGHVFEGEGYPTPTDLRYCINSVCLTLTPAGEAQLGDTPVDEAESAE
>NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D
MSTAAEQNAAGTPQLTLHGIEVPEVVPLEAPSSPIPTLITTESGLRRAAEQLAAASGPVAVDTERAQGIRYGARAFLVQLKREDQLYLIDPEAFKDLRIINDALADAEWVIHAAIQDFPSLDMLGMRPNRLFDTELGARLAGLERVNLGATVEELLGYKLAKKHSKEDWSRRPLPESWLNYALLDVDVLIDLRDALEDLLRQQGKLQYALEEFEYLCKTPVKDPTDQPERWRKTKGRTMLRSVKQLTALRNLWHERDSLARKKDVDAKRLLPDSAIVEAARTMPRNVPAIMSIPGFQTRGLRREGPRWVRAIAAAARGENAVPFTLPSTAPPPLKAWESKRPENLALFTEVRQAIDELSEKLTIPAQNLITTDYVRRLCWEPPARFDEQTLRDALAEYGARSWQTGLVAPVIAPIFARHLG
>NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein
MPAPNGCCRSQKACTSPTASAAVKSNATESNAVDTAVDTAEIESASRVFSRRATLITGAVASGALLASCAEGDSNVTVPEGSVEMGAASAVGVGKAAKLTHGSTTVIVSQPSSGEYKAFSTVCTHQGCQVQVQDSNRIVCPCHGSEYAVADGSVIHGPAEEALTSYPVQVKGGKIFVAHTNKDS

Crispr_ID: NZ_AP014938_7

• CRISPR_ID: NZ_AP014938_7
• CRISPR_location: 113667-114205
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 7 spacers
• Cas_protein_info: cas1,cas2,csb1gr7,csb2gr5,cas3,csb3

Consensus repeat of NZ_AP014938_7

Consensus_repeat	Method
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CRISPRCasFinder
GCCTCAATGAAAGCCCATCCAAAAAGGAAGGGAAATA	PILER-CR

spacers of NZ_AP014938_7

>7.1|113703|36|NZ_AP014938|CRISPRCasFinder
ACCGTTGCACTCAGAGAAATAATAGCGGAACACCTC
>7.2|113775|34|NZ_AP014938|CRISPRCasFinder
AGCTTGCACAGCACCATCCAACTCCTCCTGACCG
>7.3|113845|37|NZ_AP014938|CRISPRCasFinder
ACAGGTAGCAGCTCGAACCTCGGGTCTGCGTGCCCGC
>7.4|113918|36|NZ_AP014938|CRISPRCasFinder
GGAAGCTGCGGCTGAAGGTGAAGTGTACGTTCCAAA
>7.5|113990|38|NZ_AP014938|CRISPRCasFinder
CCGGCTTCGGCAAAAGAACCGTTTGAATGGCCTACAAA
>7.6|114064|34|NZ_AP014938|CRISPRCasFinder
CCAACAGGCCACTAGCAACCATATAGTTCAGCTG
>7.7|114134|35|NZ_AP014938|CRISPRCasFinder
CCAGTGCAGCGGGTAGAAATCTTCTCCGCAAAACC
>7.8|113776|33|NZ_AP014938|PILER-CR
GCTTGCACAGCACCATCCAACTCCTCCTGACCG
>7.9|113846|36|NZ_AP014938|PILER-CR
CAGGTAGCAGCTCGAACCTCGGGTCTGCGTGCCCGC

CRISPR arrays and Neighbor proteins around NZ_AP014938_7

CRISPR arrays

The CRISPR arrays of NZ_AP014938_7

>merge|NZ_AP014938|7|113667-114205|CRISPRCasFinder,PILER-CR
GCCTTAATGAAAGCCCTTCCCAAAAGGAAGGGAACTACCGTTGCACTCAGAGAAATAATAGCGGAACACCTCGCCTCAATGAAAGTCCATCCAAAAAGGAAGGGAAATAGCTTGCACAGCACCATCCAACTCCTCCTGACCGGCCTCAATGAAAGCCCTTCCGAAAAGAAAGGGAAATACAGGTAGCAGCTCGAACCTCGGGTCTGCGTGCCCGCGCCTCAACGAAAGCCCCTCCAAAAAGGAAGGGAAATGGAAGCTGCGGCTGAAGGTGAAGTGTACGTTCCAAAGCCTCAATGAAAGCCCCTCCAAAAAGGAAGGGAAATCCGGCTTCGGCAAAAGAACCGTTTGAATGGCCTACAAAGCCTCAATAAAAGTCCCTACACAACTGTAGGGAAATCCAACAGGCCACTAGCAACCATATAGTTCAGCTGCCCTCAATGAAAATTCCTACGAAAAGGTAGGGAAATCCAGTGCAGCGGGTAGAAATCTTCTCCGCAAAACCGCCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAATG

>NZ_AP014938|7|7|113667-114205|CRISPRCasFinder
GCCTTAATGAAAGCCCTTCCCAAAAGGAAGGGAACT	ACCGTTGCACTCAGAGAAATAATAGCGGAACACCTC
GCCTCAATGAAAGTCCATCCAAAAAGGAAGGGAAAT	AGCTTGCACAGCACCATCCAACTCCTCCTGACCG
GCCTCAATGAAAGCCCTTCCGAAAAGAAAGGGAAAT	ACAGGTAGCAGCTCGAACCTCGGGTCTGCGTGCCCGC
GCCTCAACGAAAGCCCCTCCAAAAAGGAAGGGAAAT	GGAAGCTGCGGCTGAAGGTGAAGTGTACGTTCCAAA
GCCTCAATGAAAGCCCCTCCAAAAAGGAAGGGAAAT	CCGGCTTCGGCAAAAGAACCGTTTGAATGGCCTACAAA
GCCTCAATAAAAGTCCCTACACAACTGTAGGGAAAT	CCAACAGGCCACTAGCAACCATATAGTTCAGCTG
CCCTCAATGAAAATTCCTACGAAAAGGTAGGGAAAT	CCAGTGCAGCGGGTAGAAATCTTCTCCGCAAAACC
GCCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAATG

>NZ_AP014938|7|2|113739-113918|PILER-CR
GCCTCAATGAAAGTCCATCCAAAAAGGAAGGGAAATA	GCTTGCACAGCACCATCCAACTCCTCCTGACCG
GCCTCAATGAAAGCCCTTCCGAAAAGAAAGGGAAATA	CAGGTAGCAGCTCGAACCTCGGGTCTGCGTGCCCGC
GCCTCAACGAAAGCCCCTCCAAAAAGGAAGGGAAATG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl|CDD|377432
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl|CDD|237976
NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl|CDD|274235
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	unknown	unknown	gnl|CDD|224402
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	unknown	unknown	gnl|CDD|237001
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	unknown	unknown	gnl|CDD|271320
NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein	unknown	unknown	gnl|CDD|239550
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl|CDD|378223
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl|CDD|376583
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	unknown	unknown	gnl|CDD|236090
NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D	unknown	unknown	gnl|CDD|223426
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl|CDD|274005
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	unknown	unknown	gnl|CDD|237000
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	unknown	unknown	gnl|CDD|235906
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	gnl|CDD|187733

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	7.6e-89	292.6	0.0
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	6.1e-17	56.9	0.0
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	1.9e-88	291.9	1.5
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	3.6e-80	265.0	8.6
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	4.6e-21	69.6	0.0
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	2.5e-146	481.9	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	gnl|CDD|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	1.03457e-10
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	gnl|CDD|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	2.01789e-68
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	gnl|CDD|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0.00203925
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.62042e-84
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000981202
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.62642e-18
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	gnl|CDD|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	1.41217e-14
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.08474e-104
NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein	gnl|CDD|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.25059e-23
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	gnl|CDD|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.1891e-25
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl|CDD|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	7.1838e-77
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	gnl|CDD|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	1.98377e-64
NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D	gnl|CDD|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	1.21483e-67
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl|CDD|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	4.70631e-70
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	gnl|CDD|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	0.00135953
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	gnl|CDD|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00420809
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	gnl|CDD|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	2.98519e-167

Protein sequences

>NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1
MSTPYSAGDELPISLVMHTVYCPRRAWIESNGEKTDTSQMQEGQSAHKRVDDPKTSRGTQQRAVTISSTRLGLTGRCDALEPQEDGSTRIIEYKATPVRRNASVTPAHRVQLALQKICLEEAGETVSECAVHFTNHNKTVPVDISDEDIRTAEEYVHTTRALIDNPTAPQPLEDSPRCSWCSHISVCLPDESHGKENITRVVASNPDSQVAHLTTQGSRATVQQGRLIVQHLGETISSVPLERVHSLVVHGNIDVSSALLRELMWRNCTIIWCSSTGRVYGWSQPGTGPNGLARVQQHVLSAQGHLPIAAAMIASKISNQATLLRRNGHAADVCRTMRDIQKHTPQATSIPEMLGLEGEAASLYFGNFATMLKEDVLTELGWTWTGRQGRGANDPINILLNYAYGMLSSECIRAILTCGLDPHAGFLHSSSRNKPALALDLMEEFRAVIADSVVVSLINRKQVKASTFTAVGGSYRLTPEGRKTVIAAFEKRMATEITHPTYGYSVTWRRAIEVQARMLLGVINGTTREYTGVTVR
>NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2
MRDDARRTLIAYDVPSDRRRAKLAKLILSYGDRIQYSVFIVDAAPAKVRRIKDEVQDLIDPDEDSVLFCDLGLLARLDEPTFSYIGRAREVTESDALIL
>NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein
MLTIGADPISQATSMATGVIVNLIAFVLIEMVLKPILARVGYLPEPGIPRNAHSEEMLGDGAAISALPLNIGEESAHIHVSVMSHGGTVITVLTPHSHVTLHVSGDVQKPPTTTESQ
>NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7
MSQTTITLADLIENVKLGGGSVITSITELEPAAGPHASVAPAKFVDGKGNDSKSVFAYETRYIVEEVQNPDESENEDESKEPEKDVKGQPQKVVLIDSKQSELNRAEAAIEQGRQYGDEAVVKIPRAVVTYQTENGPVEYSDMELSHRIFDGHFRAGTIDDKLITENDQYRALRNSTPADMSALLNTAPAALLFGAWDSTRKSHQVRLRSALVGEIIGVLADQEPGAEHRQARRGGARVDAVAASVKLAPKDMESLVNDQEAELSPGNVGARRNDIKKAKADARISASTLGLGSIPPTLEETGAVACHRIIRSWVLSLATLRQLRFGQDETKNVAARALLAALGLNAIARAERELYIRANCDLIESAAPVVTLDQRFGKKKTFAPLTVEHTDQLLLEAIENAKKAGVADWNGQTFNVEGNPIIIKNATAEDAE
>NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MTNLGILARFPLGVYQGHKADGSPDAFPDPARLQAALLSAAAQGPHAIIENGQLAPSDESLKALKWLEENPPTGLQLPDMCPVYRSPNKMSRFMYREVAYSEKDGRQTERRAVSDGWAVSDTIGWQYDKVPADIAETITQLCGEVPSLGEASSLTALYTGDVEPTHTIDTKSGPFEAGGMPVRVPVPGRVDALMRAHAEAYPVKVPTKAGDKTAASDTMRPSPVPTAGLGSIKYQPVEAETSTSPWEYLWLLEVDGEELKSEQYVKACSLLHKALVAAAGFGAPSLITGRYPKGHKPANSLALQYLPARYLPDYLRREVKSKGVLLVLVPASAPTDEAVELGIALRSVETLYAQDFPRLTVKLRQKRLPAQGFWDAPKTGYKRLWRTLSAAVPESRVFNRPKKTETKAWTFADAALLSMAYVWRDSFEAPEAETSRERIRSLRDQVAKKAEAKVLEAHRVTQNPAAYAYKLPRTLPAEPWRGVVDLGNLATDTTLVAIGQSRHMGGGLLVPFDVPTEEYDRRKKEEKHD
>NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MTSPATALPSITRDEFGDFFAALNGGYDPFSWQEEVLDHICEHGVWPERINAPTGSGKSSVVDIHLFANALAAVGAAPRVPRRLCVTVGRRALVDSQATRADKILGRMGKALTDGSGEPDILRRVAEALHSFQTRNDEKGSKPFETGHIRGELSNRNLPVTDISACAIIAATPDMYGSRALFRGYGSTKAARPRETALLTMDTVMVLDEAHMNRQLLHTTQRIAELQKYEADLGVPTLQVVETTATPSTEDSESTTLGVDIEALDTPNDKELHRRVYSHKELVLHPIDKWDGKPGNSPTVNAAVDAIMERLAHREAGESSKKAYTVGCIVNHVRTAISIKEALAKNKALGKDEVQLLVGRMRPYDLKNLQAEHSGLFITEGDESVKVVVATQTLEVGIDVDFADLVTELAPASSLAQRFGRVNRLGHRTDSKVVVIEPASSDLVKKDAPPYKAVDLSNAYAWLEALNGAENPSVNPAAMVKNPPVQSSPERLLYQRPEWPDLLEFSRTDENPYDEPDLDLWLHDSLDAETAMGGVIVRDNLPSNTSAAMEILKTSYFAPSDRETFPANLKILQEILDYQDEHGVKPRKFLYRQGEISLWQDADHGAESSQSLAPGDVLLLDMGSVPFTNQGIAVTQRELPSKKDELKAVPFLDDAELYVAELYVYEKCADREKHFREYLGLSPEEAAELLDSQSTDGKKMIASELSTEAEGGQEVIAWYAEVTGKESVEGSDIAQELVLAAPVLLDDHQNDVAERTRQLAENLGLAPEFSEALELAAKYHDEGKRDLRFQQMLGADPDAEALAKSGHRSVAEAYRARSRSALPRGWRHEQLSALMVAASPEKVGEHRDLVLRIIGCSHGHGRFSFAHDAGFLLKEGYLPEGTDYEALKEQATRLFNVGYWDNLMEQTSRTYGPYATAYLEAVERAADAQISREGH
>NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase
MAMLTIAGDYTSALTHFALYGLSLMVEQKHPGAVTVGWSQEGQPRAQMHAEGVSEEEIAECVHSYVSSLAAEDSWVNVDQSYGAGKEAAVFSPFSPRFRGIDAEKYPDDWASHQKTRQAHLDALMERDDLLSLLWISGLGEPSYWRFEAKAPRPDHGASRWEMKTRNKGQEFVKDRLRLMCADLATWEPSAMLSGITGQTLYDSLDKKPDSRTGTGFTVPQPTDTALAFCALVGIANFPVIHQVHRIGVTPGAYPYNALHPRLMVLPVSSGKVTPARLRTVLRSHPYRRVVDEVGKAMERGSLSSDIFVSELVDEKAILREKGVQAFVAFPIVKVGSDSAPERQVLKGSAIPMG
>NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter
MEAKEFSEKALLFFAKSKYADLFGVALVIAIAIASGYLSTNLAKYVDWGPITSFIPLGVISVINVGISMMSTRLTGRLSNVGNVLGIINTALSGAIDYILGNKAAIITYPVTFIVYTFAIRRWQNSERGKALEPPTGTKGQLIIGGIVAGSFAFSLVTNYIGYGGKTSFLFWITTVVFGLSLSANILNALKLTMQWQFWFLYNTVQCIKALTQGNFANVGKYIFYIINSVAALLLWTRNGTASKGAVAAVA
>NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein
MPLLTHRLSRRFFVKGASAAAAAGALTLQAQAAQADEAPANLAPATEETKGPRLVIQRATITETGMTVNYTAHGLREFLTEGTTLTVRHGYVRNDSFETLRSWPLTPEFDGDADSFSGSDQFPIELMQGEGVDHALQLDICSDPWGQEITHQIAARIPLAETKILKTSFEDVPDNHPFAEDIRMANQKKWLMPNPQTGAFEPDRPVTREELIALLNHAAGHAGVSENSDVAPFADAAGRPTANALHWARDRKITEPLTGGDKIDPTAPVSHEELAAVLFQYNAEVQLTEMKEGTGSRFRDVLGAGTLHRYVAWAGANDIVLDASGVFNPTAPTTRAELARFIRRYKLQNLLFTDFSYVS
>NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase
MNLASSKAFKGLAVGSLALAISGVAAIPASFAAESTRAASQSSEARTITDKAMAKITQGLPGQFQVAYSKKTNKIWVAGTADRDEHVSTIARIDANSLKIEAVAELPIIKGDSGYSYEGAYGITVDDEEGTVWVTSTRDNSVAVYDQATMKQLWTNAGLSKDDPNWIEHPREVRVDHESGKAFVTGRFFVSAIDLKTKKVEKIQLEGAPDGGTRYISMNILVDGGKLYVPERTGGKLFVIDTKTFKVEKTISVKGDKDGEVRPSDVAIDHSQNEIYVSSQGVKGENSGVSVYDATTYEFKKFIPFGTQALSLDNDEANDLVYVSDFGTGKVGVIDGGAADKLIAEVTMNGGKANDLVVLPNGSVVAVDKQAGATATVPYVLDGTTGTVSTSNKVTSKPSKDKQGNEVPAKTSDIQANSILKFKVTATAGDNSEVKQVTPETREFQGYPATATKTKATDSTAPSTEAHRTVDANGSVANIIQGLPGQFQVGYSKKNHKLFVPTVGARGGLASSLARVDADTLQTEAFAELPVKKNDKGQYGYTSAYGVTVDDVDGTVWVTNTIDNSVAVYDQQTLKLIWTNEGVKEGDPNWIEHPRSVLVDHESGKAFVTGRFFVSAIDLKTKQVEKIQLEGAPDGGTRYVSMNLFLDGGKLYVPERTGGKLFVVDTKTFKVEKTIQTQGEDSTVEVRPSDVAVDHSLNEIYVSSQGVKGVNSGISVYDLTTGEFKKFVKFGTQALALEHDEDRDLVYVTDFGTGKVAVFDGRADEVIGEVEMNGAAANDVTLLKDGSVLVLDKKDRDEKVTLPYVLNGTTGEITTASEYTTLPTKDRQGNDVPASVQQLKANSILKFKVGVKDTDASAAPVGITPTSLQFAGYPTVTGVKAEESKPADPKPADPKPADPKPEDKKAEDKKAEDAKSEDKKSDAKSENTAEAKDQTSKDQASQSDSKSDAKTGAQDSKSAPDAVKADKSGSAVKNGGSDSSTGGSSVAKSEAGSSQAGSSRSALANTGANAVMPLVAFASVALIAGAALVMRRRKA
>NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE
MPTTTVHLTDRIPRVSADELLAGFRPSERFGEVSFDSYIPDPNQPSQAEAVQKLKDFGDKINGGGAGAGFFGRLFGGKKKDSTKAGLYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSSYKLVCIDEFELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALGEGRFAAEDFKREIQVLASQFEVHRVDGEDFRHRGLPAAPEPVADDAFDAKVEEVFGGQTVGVDNFADLVEHLAKVHPSRYRQLIDGLDGIAWRDVHPITEQSVALRFVVLADRLYDKDLPIVSSGVPFDKVFTEEMLAGGYQKKYFRAVSRLTALAREGMLGEEAER
>NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein
MDSTIFTRRTLLGSGALVGLGALLAACGQQANNEAAATASATPTETTSASAAASDATSASATPKPVVTRGYSGQSKAPDGEYRKADGYGPAQNVPKPRNEPAQYPETEEGLHHMMEDWVIAHNYAIQTGDCSYAFKYVTEDSEEYGFYVYIEELYDNGGWVINGLDSYQAESALIYDDSQKIYRMKVRRFWTTAMYVESNGKMTRKANTNTDDDSFYFLFNYSNGYWKITDTKYENDL
>NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein
MKKINSFSLTFCVALTLFTHNLHTLPSSGSECTTKNDKGHCIKTSKNKRYPESERSGDTSQRNTQNTVAVSSDPSASEASVAKMAQEWEKEHPEQLDGAKQQYLASSAEARKAGDAECYTKGDRRPGHYVIGSLPLGDEANRIPNHVGGRYCVPNDAKTLTSNDPAQPKGPSPEEMLQEIEDQFAKTDIQAPVLKQSYNLGTGLSEDNPNVYKGDQINFYVDAPTARWEGDLMIGHVEMESYPTQMTIQYGNGDEGSFYTMGKPVSRARGKESRKTATSYAYQRSGNFHAYATVSYSGRFRVNGGDWQALDVVLTKETVDPLLVRVWWTDVGRVAGDCSYDDTRWGCKNDPTMGKKDNPNPRLRKADIRTGQRWHLNDNGDGDTEYSLHRDWPDM
>NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein
MTSVFLTRRAVLSGGALLGMSALLAACGQQAANEASVSASSSATPSETASASATATESASASATPSPRVTRGYSGNSKAPDGEYRKADGYGPAQNVPEPRKEPAQYPETEDGIDHMMQDWLTAHNYAIQTGDCAPVFRYVEKTSKEYPFYEYIDDLYKRGGWVVDGLDAYRAEGDLIYDDQQKFYRMKVRRFWTTVMYVDSNGKITKQANTNKDDDKFNFFFSYSNGYWKIIGSGYSDTPENNEE
>NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein
MTSVFLTRRAMLSGGALLGLSALFAACGQQANNEAAATASAAPSETALASAAVSEAATSTPSPVITRGYSGGSKAPDGEYRKADGKGPAQNVPEPRKEPAQYPETEEGLMKMMQDWIVAHNYGIQTGDCSYAFKYVSEESEEYGFYKYIETLYKNGGWAVNSLDSYQSESTLFYDESQKIYRMKVHRIWSTEIYIESNGDITRRANTDTSDDTFYFLYTYSDGYWKIINSKYEHEL
>NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein
MTSVILTRRAMLSGGTLLGLGALFAACGQQASNEAAATASAVPSETTSASATASESPSASATPSTVRGYSGGSKAPDGEYRPADKYGPAQNVPKPSAPEEGYNEKSLEGMRKTMDAWILWGNYGTQTGNYSMAFKFMSPTFEDERKAYTGVEDLYKRGGWVIGGINHYLADGNPWSEDGETYFWKAYREWDYETYVESDGSWRKWSNDDKTDDTFKFELKHNGQKWEIMNYEPVDD
>NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase
MAKKTKGKKSGAATAAVALLTETNTPFQMREYEHVEGVTSFGEEAAKNLGASEEQVFKTLLIVHEKDFAVAIVPVSGKLNIKAAAAALGWKSASMCDPKVAERRTGYVVGGISPLGQKTPSPTLLDESAQLFDTIMVSGGKRGLDVELAPDDLLKLTNGKYADIRA
>NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MGNSLPGVGAIAKNWREVLKPEEYAVLREGGTERAFTGEYWNTHTEGVYSCRACGTELFRSDQKFDSHCGWPSFFAPLAEDRVRYLEDTTFGMRRVEVRCAACDSHLGHVFEGEGYPTPTDLRYCINSVCLTLTPAGEAQLGDTPVDEAESAE
>NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D
MSTAAEQNAAGTPQLTLHGIEVPEVVPLEAPSSPIPTLITTESGLRRAAEQLAAASGPVAVDTERAQGIRYGARAFLVQLKREDQLYLIDPEAFKDLRIINDALADAEWVIHAAIQDFPSLDMLGMRPNRLFDTELGARLAGLERVNLGATVEELLGYKLAKKHSKEDWSRRPLPESWLNYALLDVDVLIDLRDALEDLLRQQGKLQYALEEFEYLCKTPVKDPTDQPERWRKTKGRTMLRSVKQLTALRNLWHERDSLARKKDVDAKRLLPDSAIVEAARTMPRNVPAIMSIPGFQTRGLRREGPRWVRAIAAAARGENAVPFTLPSTAPPPLKAWESKRPENLALFTEVRQAIDELSEKLTIPAQNLITTDYVRRLCWEPPARFDEQTLRDALAEYGARSWQTGLVAPVIAPIFARHLG
>NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein
MPAPNGCCRSQKACTSPTASAAVKSNATESNAVDTAVDTAEIESASRVFSRRATLITGAVASGALLASCAEGDSNVTVPEGSVEMGAASAVGVGKAAKLTHGSTTVIVSQPSSGEYKAFSTVCTHQGCQVQVQDSNRIVCPCHGSEYAVADGSVIHGPAEEALTSYPVQVKGGKIFVAHTNKDS

Crispr_ID: NZ_AP014938_8

• CRISPR_ID: NZ_AP014938_8
• CRISPR_location: 114533-115938
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 19 spacers
• Cas_protein_info: cas1,cas2,csb1gr7,csb2gr5,cas3,csb3

Consensus repeat of NZ_AP014938_8

Consensus_repeat	Method
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CRISPRCasFinder
GCCTCAATGAAAGCCCNTCCNAAAAGGAAGGGAAAT	CRT
GCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAAT	PILER-CR
CCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAAT	PILER-CR

spacers of NZ_AP014938_8

>8.1|114569|36|NZ_AP014938|CRISPRCasFinder,CRT
CCCTCTGCTCAACCTCCCGGGGCTCCAGGCTCTGAG
>8.2|114641|35|NZ_AP014938|CRISPRCasFinder,CRT
GCACGCCCTTACTAATCTTACCGCCTCGGTCATAA
>8.3|114712|35|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
TCTTCTAGGGTGGTGCGTAGCGCGTCAAGCTGCTC
>8.4|114783|38|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
TTCCAGCCAAGCCGCCCGTCAATGTCGCCGGTGGTGGA
>8.5|114857|34|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
ACAACAACCCCTCAGCCGCGCCTCCCGGTCACAA
>8.6|114927|35|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
AACAACTGCCCCTACCCCATCCCCTTCGAAGCAGT
>8.7|114998|37|NZ_AP014938|CRISPRCasFinder,CRT
GCCGCATGATTTTCACGCAGGCTATTTTGCGCGCCCG
>8.8|115071|43|NZ_AP014938|CRISPRCasFinder,CRT
GTGATTCTCCAAGGGGCCGTAGCCTACGTTCTGCTTTGGATTG
>8.9|115150|35|NZ_AP014938|CRISPRCasFinder,CRT
ACATTGGCCAAAAAATGGTCTATTTCATCTCCGGT
>8.10|115221|35|NZ_AP014938|CRISPRCasFinder,CRT
TCGACCCCAGAACATTCTCAGCCTCCACCAAATCC
>8.11|115292|36|NZ_AP014938|CRISPRCasFinder,CRT
GATGTAGCTGAGCCACACGTAGCCGTTGTTCGCGAC
>8.12|115364|37|NZ_AP014938|CRISPRCasFinder,CRT
GAACGTTGCCTGGGAAAAGGGTAACACCAAAGTGAAC
>8.13|115437|36|NZ_AP014938|CRISPRCasFinder,CRT
CATGGCGGTGGTCTTGCCGCGGCCACTGCGGCCTGC
>8.14|115509|34|NZ_AP014938|CRISPRCasFinder,CRT
CCTGTGCTACGCGCGCCGGGTCGCCGGGCTCCTT
>8.15|115579|37|NZ_AP014938|CRISPRCasFinder,CRT
TGGTGTCTGAGCGGCCGTCGTTGGGGCCTACGGCGAC
>8.16|115652|37|NZ_AP014938|CRISPRCasFinder,CRT
CTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGA
>8.17|115725|34|NZ_AP014938|CRISPRCasFinder,CRT
CGTTGGTGGGGTCGGGGGTGCTGGGGCAGCTGGT
>8.18|115795|34|NZ_AP014938|CRISPRCasFinder,CRT
TGATTCGCTGGAAGAATTCAATCGTCACTGCCTG
>8.19|115865|37|NZ_AP014938|CRISPRCasFinder,CRT
CGTTAGGCAACGGTACGATTGACGAAGGCACCGGCGA
>8.20|115071|44|NZ_AP014938|PILER-CR
GTGATTCTCCAAGGGGCCGTAGCCTACGTTCTGCTTTGGATTGG
>8.21|115150|36|NZ_AP014938|PILER-CR
ACATTGGCCAAAAAATGGTCTATTTCATCTCCGGTG
>8.22|115221|36|NZ_AP014938|PILER-CR
TCGACCCCAGAACATTCTCAGCCTCCACCAAATCCG
>8.23|115292|37|NZ_AP014938|PILER-CR
GATGTAGCTGAGCCACACGTAGCCGTTGTTCGCGACG
>8.24|115364|38|NZ_AP014938|PILER-CR
GAACGTTGCCTGGGAAAAGGGTAACACCAAAGTGAACG
>8.25|115437|37|NZ_AP014938|PILER-CR
CATGGCGGTGGTCTTGCCGCGGCCACTGCGGCCTGCG
>8.26|115509|35|NZ_AP014938|PILER-CR
CCTGTGCTACGCGCGCCGGGTCGCCGGGCTCCTTG
>8.27|115579|38|NZ_AP014938|PILER-CR
TGGTGTCTGAGCGGCCGTCGTTGGGGCCTACGGCGACG
>8.28|115652|38|NZ_AP014938|PILER-CR
CTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGAC

CRISPR arrays and Neighbor proteins around NZ_AP014938_8

CRISPR arrays

The CRISPR arrays of NZ_AP014938_8

>merge|NZ_AP014938|8|114533-115938|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
ACCTCAATGAAAGCCCATCCAAAAAGGAAGGGAAATCCCTCTGCTCAACCTCCCGGGGCTCCAGGCTCTGAGGCCTCGATGAAAGTCCCTCTCAAAAGGATGGGAAATGCACGCCCTTACTAATCTTACCGCCTCGGTCATAAGCCTCAATGAAAGCCCCTCCAAAAAGGAAGGGAAATTCTTCTAGGGTGGTGCGTAGCGCGTCAAGCTGCTCGCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAATTTCCAGCCAAGCCGCCCGTCAATGTCGCCGGTGGTGGAGCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAATACAACAACCCCTCAGCCGCGCCTCCCGGTCACAAGCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAATAACAACTGCCCCTACCCCATCCCCTTCGAAGCAGTGCCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAATGCCGCATGATTTTCACGCAGGCTATTTTGCGCGCCCGGCCTCAATGAAAGCCCTTCCAAAAAGGCAGGGAAATGTGATTCTCCAAGGGGCCGTAGCCTACGTTCTGCTTTGGATTGGCCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAATACATTGGCCAAAAAATGGTCTATTTCATCTCCGGTGCCTCAATGAAAGCTCTTCCGAAAAGGAAGGGAAATTCGACCCCAGAACATTCTCAGCCTCCACCAAATCCGCCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAATGATGTAGCTGAGCCACACGTAGCCGTTGTTCGCGACGCCTCAATGAAAGCCCTTCCCATAAGGAAGGGAAATGAACGTTGCCTGGGAAAAGGGTAACACCAAAGTGAACGCCTCAATGAAAGCCCTTCCCATAAGGAAGGGAAATCATGGCGGTGGTCTTGCCGCGGCCACTGCGGCCTGCGCCTCAATGAAAGCCCTTCCTAAAAGGAAGGGAAATCCTGTGCTACGCGCGCCGGGTCGCCGGGCTCCTTGCCTCAATGAAAGTCCCTCCCAAAAGGAAGGGAAATTGGTGTCTGAGCGGCCGTCGTTGGGGCCTACGGCGACGCCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAATCTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCGTTGGTGGGGTCGGGGGTGCTGGGGCAGCTGGTGCCTCAATGAAAGCCCTTCCAAAAAGGTAGGGAAATTGATTCGCTGGAAGAATTCAATCGTCACTGCCTGGCCTCAAGGCAAGTCTCTGCTAAAAGGCAGAGAAGTCGTTAGGCAACGGTACGATTGACGAAGGCACCGGCGAGCCTCAATGAAAGTCTCTACAAAACTGTAGGGAAATA

>NZ_AP014938|8|8|114533-115938|CRISPRCasFinder
ACCTCAATGAAAGCCCATCCAAAAAGGAAGGGAAAT	CCCTCTGCTCAACCTCCCGGGGCTCCAGGCTCTGAG
GCCTCGATGAAAGTCCCTCTCAAAAGGATGGGAAAT	GCACGCCCTTACTAATCTTACCGCCTCGGTCATAA
GCCTCAATGAAAGCCCCTCCAAAAAGGAAGGGAAAT	TCTTCTAGGGTGGTGCGTAGCGCGTCAAGCTGCTC
GCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAAT	TTCCAGCCAAGCCGCCCGTCAATGTCGCCGGTGGTGGA
GCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAAT	ACAACAACCCCTCAGCCGCGCCTCCCGGTCACAA
GCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAAT	AACAACTGCCCCTACCCCATCCCCTTCGAAGCAGT
GCCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAAT	GCCGCATGATTTTCACGCAGGCTATTTTGCGCGCCCG
GCCTCAATGAAAGCCCTTCCAAAAAGGCAGGGAAAT	GTGATTCTCCAAGGGGCCGTAGCCTACGTTCTGCTTTGGATTG
GCCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAAT	ACATTGGCCAAAAAATGGTCTATTTCATCTCCGGT
GCCTCAATGAAAGCTCTTCCGAAAAGGAAGGGAAAT	TCGACCCCAGAACATTCTCAGCCTCCACCAAATCC
GCCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAAT	GATGTAGCTGAGCCACACGTAGCCGTTGTTCGCGAC
GCCTCAATGAAAGCCCTTCCCATAAGGAAGGGAAAT	GAACGTTGCCTGGGAAAAGGGTAACACCAAAGTGAAC
GCCTCAATGAAAGCCCTTCCCATAAGGAAGGGAAAT	CATGGCGGTGGTCTTGCCGCGGCCACTGCGGCCTGC
GCCTCAATGAAAGCCCTTCCTAAAAGGAAGGGAAAT	CCTGTGCTACGCGCGCCGGGTCGCCGGGCTCCTT
GCCTCAATGAAAGTCCCTCCCAAAAGGAAGGGAAAT	TGGTGTCTGAGCGGCCGTCGTTGGGGCCTACGGCGAC
GCCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAAT	CTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGA
CCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CGTTGGTGGGGTCGGGGGTGCTGGGGCAGCTGGT
GCCTCAATGAAAGCCCTTCCAAAAAGGTAGGGAAAT	TGATTCGCTGGAAGAATTCAATCGTCACTGCCTG
GCCTCAAGGCAAGTCTCTGCTAAAAGGCAGAGAAGT	CGTTAGGCAACGGTACGATTGACGAAGGCACCGGCGA
GCCTCAATGAAAGTCTCTACAAAACTGTAGGGAAATA

>NZ_AP014938|8|2|114533-115937|CRT
ACCTCAATGAAAGCCCATCCAAAAAGGAAGGGAAAT	CCCTCTGCTCAACCTCCCGGGGCTCCAGGCTCTGAG
GCCTCGATGAAAGTCCCTCTCAAAAGGATGGGAAAT	GCACGCCCTTACTAATCTTACCGCCTCGGTCATAA
GCCTCAATGAAAGCCCCTCCAAAAAGGAAGGGAAAT	TCTTCTAGGGTGGTGCGTAGCGCGTCAAGCTGCTC
GCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAAT	TTCCAGCCAAGCCGCCCGTCAATGTCGCCGGTGGTGGA
GCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAAT	ACAACAACCCCTCAGCCGCGCCTCCCGGTCACAA
GCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAAT	AACAACTGCCCCTACCCCATCCCCTTCGAAGCAGT
GCCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAAT	GCCGCATGATTTTCACGCAGGCTATTTTGCGCGCCCG
GCCTCAATGAAAGCCCTTCCAAAAAGGCAGGGAAAT	GTGATTCTCCAAGGGGCCGTAGCCTACGTTCTGCTTTGGATTG
GCCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAAT	ACATTGGCCAAAAAATGGTCTATTTCATCTCCGGT
GCCTCAATGAAAGCTCTTCCGAAAAGGAAGGGAAAT	TCGACCCCAGAACATTCTCAGCCTCCACCAAATCC
GCCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAAT	GATGTAGCTGAGCCACACGTAGCCGTTGTTCGCGAC
GCCTCAATGAAAGCCCTTCCCATAAGGAAGGGAAAT	GAACGTTGCCTGGGAAAAGGGTAACACCAAAGTGAAC
GCCTCAATGAAAGCCCTTCCCATAAGGAAGGGAAAT	CATGGCGGTGGTCTTGCCGCGGCCACTGCGGCCTGC
GCCTCAATGAAAGCCCTTCCTAAAAGGAAGGGAAAT	CCTGTGCTACGCGCGCCGGGTCGCCGGGCTCCTT
GCCTCAATGAAAGTCCCTCCCAAAAGGAAGGGAAAT	TGGTGTCTGAGCGGCCGTCGTTGGGGCCTACGGCGAC
GCCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAAT	CTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGA
CCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CGTTGGTGGGGTCGGGGGTGCTGGGGCAGCTGGT
GCCTCAATGAAAGCCCTTCCAAAAAGGTAGGGAAAT	TGATTCGCTGGAAGAATTCAATCGTCACTGCCTG
GCCTCAAGGCAAGTCTCTGCTAAAAGGCAGAGAAGT	CGTTAGGCAACGGTACGATTGACGAAGGCACCGGCGA
GCCTCAATGAAAGTCTCTACAAAACTGTAGGGAAAT

>NZ_AP014938|8|3|114676-114997|PILER-CR
GCCTCAATGAAAGCCCCTCCAAAAAGGAAGGGAAAT	TCTTCTAGGGTGGTGCGTAGCGCGTCAAGCTGCTC
GCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAAT	TTCCAGCCAAGCCGCCCGTCAATGTCGCCGGTGGTGGA
GCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAAT	ACAACAACCCCTCAGCCGCGCCTCCCGGTCACAA
GCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAAT	AACAACTGCCCCTACCCCATCCCCTTCGAAGCAGT
GCCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAATGCCGCATGATTTTCACGCAGGCTATTTTGCGCGCCCGGCCTCAATGAAAGCCCTTCCAAAAAGGCAGGGAAAT	GTGATTCTCCAAGGGGCCGTAGCCTACGTTCTGCTTTGGATTGG
CCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAAT	ACATTGGCCAAAAAATGGTCTATTTCATCTCCGGTG
CCTCAATGAAAGCTCTTCCGAAAAGGAAGGGAAAT	TCGACCCCAGAACATTCTCAGCCTCCACCAAATCCG
CCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAAT	GATGTAGCTGAGCCACACGTAGCCGTTGTTCGCGACG
CCTCAATGAAAGCCCTTCCCATAAGGAAGGGAAAT	GAACGTTGCCTGGGAAAAGGGTAACACCAAAGTGAACG
CCTCAATGAAAGCCCTTCCCATAAGGAAGGGAAAT	CATGGCGGTGGTCTTGCCGCGGCCACTGCGGCCTGCG
CCTCAATGAAAGCCCTTCCTAAAAGGAAGGGAAAT	CCTGTGCTACGCGCGCCGGGTCGCCGGGCTCCTTG
CCTCAATGAAAGTCCCTCCCAAAAGGAAGGGAAAT	TGGTGTCTGAGCGGCCGTCGTTGGGGCCTACGGCGACG
CCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAAT	CTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGAC


>NZ_AP014938|8|4|115036-115724|PILER-CR
	TCTTCTAGGGTGGTGCGTAGCGCGTCAAGCTGCTC
GCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAAT	TTCCAGCCAAGCCGCCCGTCAATGTCGCCGGTGGTGGA
GCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAAT	ACAACAACCCCTCAGCCGCGCCTCCCGGTCACAA
GCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAAT	AACAACTGCCCCTACCCCATCCCCTTCGAAGCAGT
GCCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAATGCCGCATGATTTTCACGCAGGCTATTTTGCGCGCCCGGCCTCAATGAAAGCCCTTCCAAAAAGGCAGGGAAAT	GTGATTCTCCAAGGGGCCGTAGCCTACGTTCTGCTTTGGATTGG
CCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAAT	ACATTGGCCAAAAAATGGTCTATTTCATCTCCGGTG
CCTCAATGAAAGCTCTTCCGAAAAGGAAGGGAAAT	TCGACCCCAGAACATTCTCAGCCTCCACCAAATCCG
CCTCAATGAAAGCCCTTCCGAAAAGGAAGGGAAAT	GATGTAGCTGAGCCACACGTAGCCGTTGTTCGCGACG
CCTCAATGAAAGCCCTTCCCATAAGGAAGGGAAAT	GAACGTTGCCTGGGAAAAGGGTAACACCAAAGTGAACG
CCTCAATGAAAGCCCTTCCCATAAGGAAGGGAAAT	CATGGCGGTGGTCTTGCCGCGGCCACTGCGGCCTGCG
CCTCAATGAAAGCCCTTCCTAAAAGGAAGGGAAAT	CCTGTGCTACGCGCGCCGGGTCGCCGGGCTCCTTG
CCTCAATGAAAGTCCCTCCCAAAAGGAAGGGAAAT	TGGTGTCTGAGCGGCCGTCGTTGGGGCCTACGGCGACG
CCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAAT	CTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGAC
CCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl|CDD|377432
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl|CDD|237976
NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl|CDD|274235
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	unknown	unknown	gnl|CDD|224402
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	unknown	unknown	gnl|CDD|237001
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	unknown	unknown	gnl|CDD|271320
NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein	unknown	unknown	gnl|CDD|239550
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl|CDD|378223
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl|CDD|376583
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	unknown	unknown	gnl|CDD|236090
NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D	unknown	unknown	gnl|CDD|223426
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl|CDD|274005
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	unknown	unknown	gnl|CDD|237000
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	unknown	unknown	gnl|CDD|235906
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	gnl|CDD|187733

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	7.6e-89	292.6	0.0
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	6.1e-17	56.9	0.0
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	1.9e-88	291.9	1.5
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	3.6e-80	265.0	8.6
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	4.6e-21	69.6	0.0
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	2.5e-146	481.9	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	gnl|CDD|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	1.03457e-10
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	gnl|CDD|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	2.01789e-68
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	gnl|CDD|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0.00203925
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.62042e-84
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000981202
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.62642e-18
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	gnl|CDD|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	1.41217e-14
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.08474e-104
NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein	gnl|CDD|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.25059e-23
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	gnl|CDD|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.1891e-25
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl|CDD|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	7.1838e-77
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	gnl|CDD|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	1.98377e-64
NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D	gnl|CDD|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	1.21483e-67
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl|CDD|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	4.70631e-70
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	gnl|CDD|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	0.00135953
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	gnl|CDD|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00420809
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	gnl|CDD|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	2.98519e-167

Protein sequences

>NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1
MSTPYSAGDELPISLVMHTVYCPRRAWIESNGEKTDTSQMQEGQSAHKRVDDPKTSRGTQQRAVTISSTRLGLTGRCDALEPQEDGSTRIIEYKATPVRRNASVTPAHRVQLALQKICLEEAGETVSECAVHFTNHNKTVPVDISDEDIRTAEEYVHTTRALIDNPTAPQPLEDSPRCSWCSHISVCLPDESHGKENITRVVASNPDSQVAHLTTQGSRATVQQGRLIVQHLGETISSVPLERVHSLVVHGNIDVSSALLRELMWRNCTIIWCSSTGRVYGWSQPGTGPNGLARVQQHVLSAQGHLPIAAAMIASKISNQATLLRRNGHAADVCRTMRDIQKHTPQATSIPEMLGLEGEAASLYFGNFATMLKEDVLTELGWTWTGRQGRGANDPINILLNYAYGMLSSECIRAILTCGLDPHAGFLHSSSRNKPALALDLMEEFRAVIADSVVVSLINRKQVKASTFTAVGGSYRLTPEGRKTVIAAFEKRMATEITHPTYGYSVTWRRAIEVQARMLLGVINGTTREYTGVTVR
>NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2
MRDDARRTLIAYDVPSDRRRAKLAKLILSYGDRIQYSVFIVDAAPAKVRRIKDEVQDLIDPDEDSVLFCDLGLLARLDEPTFSYIGRAREVTESDALIL
>NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein
MLTIGADPISQATSMATGVIVNLIAFVLIEMVLKPILARVGYLPEPGIPRNAHSEEMLGDGAAISALPLNIGEESAHIHVSVMSHGGTVITVLTPHSHVTLHVSGDVQKPPTTTESQ
>NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7
MSQTTITLADLIENVKLGGGSVITSITELEPAAGPHASVAPAKFVDGKGNDSKSVFAYETRYIVEEVQNPDESENEDESKEPEKDVKGQPQKVVLIDSKQSELNRAEAAIEQGRQYGDEAVVKIPRAVVTYQTENGPVEYSDMELSHRIFDGHFRAGTIDDKLITENDQYRALRNSTPADMSALLNTAPAALLFGAWDSTRKSHQVRLRSALVGEIIGVLADQEPGAEHRQARRGGARVDAVAASVKLAPKDMESLVNDQEAELSPGNVGARRNDIKKAKADARISASTLGLGSIPPTLEETGAVACHRIIRSWVLSLATLRQLRFGQDETKNVAARALLAALGLNAIARAERELYIRANCDLIESAAPVVTLDQRFGKKKTFAPLTVEHTDQLLLEAIENAKKAGVADWNGQTFNVEGNPIIIKNATAEDAE
>NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MTNLGILARFPLGVYQGHKADGSPDAFPDPARLQAALLSAAAQGPHAIIENGQLAPSDESLKALKWLEENPPTGLQLPDMCPVYRSPNKMSRFMYREVAYSEKDGRQTERRAVSDGWAVSDTIGWQYDKVPADIAETITQLCGEVPSLGEASSLTALYTGDVEPTHTIDTKSGPFEAGGMPVRVPVPGRVDALMRAHAEAYPVKVPTKAGDKTAASDTMRPSPVPTAGLGSIKYQPVEAETSTSPWEYLWLLEVDGEELKSEQYVKACSLLHKALVAAAGFGAPSLITGRYPKGHKPANSLALQYLPARYLPDYLRREVKSKGVLLVLVPASAPTDEAVELGIALRSVETLYAQDFPRLTVKLRQKRLPAQGFWDAPKTGYKRLWRTLSAAVPESRVFNRPKKTETKAWTFADAALLSMAYVWRDSFEAPEAETSRERIRSLRDQVAKKAEAKVLEAHRVTQNPAAYAYKLPRTLPAEPWRGVVDLGNLATDTTLVAIGQSRHMGGGLLVPFDVPTEEYDRRKKEEKHD
>NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MTSPATALPSITRDEFGDFFAALNGGYDPFSWQEEVLDHICEHGVWPERINAPTGSGKSSVVDIHLFANALAAVGAAPRVPRRLCVTVGRRALVDSQATRADKILGRMGKALTDGSGEPDILRRVAEALHSFQTRNDEKGSKPFETGHIRGELSNRNLPVTDISACAIIAATPDMYGSRALFRGYGSTKAARPRETALLTMDTVMVLDEAHMNRQLLHTTQRIAELQKYEADLGVPTLQVVETTATPSTEDSESTTLGVDIEALDTPNDKELHRRVYSHKELVLHPIDKWDGKPGNSPTVNAAVDAIMERLAHREAGESSKKAYTVGCIVNHVRTAISIKEALAKNKALGKDEVQLLVGRMRPYDLKNLQAEHSGLFITEGDESVKVVVATQTLEVGIDVDFADLVTELAPASSLAQRFGRVNRLGHRTDSKVVVIEPASSDLVKKDAPPYKAVDLSNAYAWLEALNGAENPSVNPAAMVKNPPVQSSPERLLYQRPEWPDLLEFSRTDENPYDEPDLDLWLHDSLDAETAMGGVIVRDNLPSNTSAAMEILKTSYFAPSDRETFPANLKILQEILDYQDEHGVKPRKFLYRQGEISLWQDADHGAESSQSLAPGDVLLLDMGSVPFTNQGIAVTQRELPSKKDELKAVPFLDDAELYVAELYVYEKCADREKHFREYLGLSPEEAAELLDSQSTDGKKMIASELSTEAEGGQEVIAWYAEVTGKESVEGSDIAQELVLAAPVLLDDHQNDVAERTRQLAENLGLAPEFSEALELAAKYHDEGKRDLRFQQMLGADPDAEALAKSGHRSVAEAYRARSRSALPRGWRHEQLSALMVAASPEKVGEHRDLVLRIIGCSHGHGRFSFAHDAGFLLKEGYLPEGTDYEALKEQATRLFNVGYWDNLMEQTSRTYGPYATAYLEAVERAADAQISREGH
>NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase
MAMLTIAGDYTSALTHFALYGLSLMVEQKHPGAVTVGWSQEGQPRAQMHAEGVSEEEIAECVHSYVSSLAAEDSWVNVDQSYGAGKEAAVFSPFSPRFRGIDAEKYPDDWASHQKTRQAHLDALMERDDLLSLLWISGLGEPSYWRFEAKAPRPDHGASRWEMKTRNKGQEFVKDRLRLMCADLATWEPSAMLSGITGQTLYDSLDKKPDSRTGTGFTVPQPTDTALAFCALVGIANFPVIHQVHRIGVTPGAYPYNALHPRLMVLPVSSGKVTPARLRTVLRSHPYRRVVDEVGKAMERGSLSSDIFVSELVDEKAILREKGVQAFVAFPIVKVGSDSAPERQVLKGSAIPMG
>NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter
MEAKEFSEKALLFFAKSKYADLFGVALVIAIAIASGYLSTNLAKYVDWGPITSFIPLGVISVINVGISMMSTRLTGRLSNVGNVLGIINTALSGAIDYILGNKAAIITYPVTFIVYTFAIRRWQNSERGKALEPPTGTKGQLIIGGIVAGSFAFSLVTNYIGYGGKTSFLFWITTVVFGLSLSANILNALKLTMQWQFWFLYNTVQCIKALTQGNFANVGKYIFYIINSVAALLLWTRNGTASKGAVAAVA
>NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein
MPLLTHRLSRRFFVKGASAAAAAGALTLQAQAAQADEAPANLAPATEETKGPRLVIQRATITETGMTVNYTAHGLREFLTEGTTLTVRHGYVRNDSFETLRSWPLTPEFDGDADSFSGSDQFPIELMQGEGVDHALQLDICSDPWGQEITHQIAARIPLAETKILKTSFEDVPDNHPFAEDIRMANQKKWLMPNPQTGAFEPDRPVTREELIALLNHAAGHAGVSENSDVAPFADAAGRPTANALHWARDRKITEPLTGGDKIDPTAPVSHEELAAVLFQYNAEVQLTEMKEGTGSRFRDVLGAGTLHRYVAWAGANDIVLDASGVFNPTAPTTRAELARFIRRYKLQNLLFTDFSYVS
>NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase
MNLASSKAFKGLAVGSLALAISGVAAIPASFAAESTRAASQSSEARTITDKAMAKITQGLPGQFQVAYSKKTNKIWVAGTADRDEHVSTIARIDANSLKIEAVAELPIIKGDSGYSYEGAYGITVDDEEGTVWVTSTRDNSVAVYDQATMKQLWTNAGLSKDDPNWIEHPREVRVDHESGKAFVTGRFFVSAIDLKTKKVEKIQLEGAPDGGTRYISMNILVDGGKLYVPERTGGKLFVIDTKTFKVEKTISVKGDKDGEVRPSDVAIDHSQNEIYVSSQGVKGENSGVSVYDATTYEFKKFIPFGTQALSLDNDEANDLVYVSDFGTGKVGVIDGGAADKLIAEVTMNGGKANDLVVLPNGSVVAVDKQAGATATVPYVLDGTTGTVSTSNKVTSKPSKDKQGNEVPAKTSDIQANSILKFKVTATAGDNSEVKQVTPETREFQGYPATATKTKATDSTAPSTEAHRTVDANGSVANIIQGLPGQFQVGYSKKNHKLFVPTVGARGGLASSLARVDADTLQTEAFAELPVKKNDKGQYGYTSAYGVTVDDVDGTVWVTNTIDNSVAVYDQQTLKLIWTNEGVKEGDPNWIEHPRSVLVDHESGKAFVTGRFFVSAIDLKTKQVEKIQLEGAPDGGTRYVSMNLFLDGGKLYVPERTGGKLFVVDTKTFKVEKTIQTQGEDSTVEVRPSDVAVDHSLNEIYVSSQGVKGVNSGISVYDLTTGEFKKFVKFGTQALALEHDEDRDLVYVTDFGTGKVAVFDGRADEVIGEVEMNGAAANDVTLLKDGSVLVLDKKDRDEKVTLPYVLNGTTGEITTASEYTTLPTKDRQGNDVPASVQQLKANSILKFKVGVKDTDASAAPVGITPTSLQFAGYPTVTGVKAEESKPADPKPADPKPADPKPEDKKAEDKKAEDAKSEDKKSDAKSENTAEAKDQTSKDQASQSDSKSDAKTGAQDSKSAPDAVKADKSGSAVKNGGSDSSTGGSSVAKSEAGSSQAGSSRSALANTGANAVMPLVAFASVALIAGAALVMRRRKA
>NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE
MPTTTVHLTDRIPRVSADELLAGFRPSERFGEVSFDSYIPDPNQPSQAEAVQKLKDFGDKINGGGAGAGFFGRLFGGKKKDSTKAGLYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSSYKLVCIDEFELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALGEGRFAAEDFKREIQVLASQFEVHRVDGEDFRHRGLPAAPEPVADDAFDAKVEEVFGGQTVGVDNFADLVEHLAKVHPSRYRQLIDGLDGIAWRDVHPITEQSVALRFVVLADRLYDKDLPIVSSGVPFDKVFTEEMLAGGYQKKYFRAVSRLTALAREGMLGEEAER
>NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein
MDSTIFTRRTLLGSGALVGLGALLAACGQQANNEAAATASATPTETTSASAAASDATSASATPKPVVTRGYSGQSKAPDGEYRKADGYGPAQNVPKPRNEPAQYPETEEGLHHMMEDWVIAHNYAIQTGDCSYAFKYVTEDSEEYGFYVYIEELYDNGGWVINGLDSYQAESALIYDDSQKIYRMKVRRFWTTAMYVESNGKMTRKANTNTDDDSFYFLFNYSNGYWKITDTKYENDL
>NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein
MKKINSFSLTFCVALTLFTHNLHTLPSSGSECTTKNDKGHCIKTSKNKRYPESERSGDTSQRNTQNTVAVSSDPSASEASVAKMAQEWEKEHPEQLDGAKQQYLASSAEARKAGDAECYTKGDRRPGHYVIGSLPLGDEANRIPNHVGGRYCVPNDAKTLTSNDPAQPKGPSPEEMLQEIEDQFAKTDIQAPVLKQSYNLGTGLSEDNPNVYKGDQINFYVDAPTARWEGDLMIGHVEMESYPTQMTIQYGNGDEGSFYTMGKPVSRARGKESRKTATSYAYQRSGNFHAYATVSYSGRFRVNGGDWQALDVVLTKETVDPLLVRVWWTDVGRVAGDCSYDDTRWGCKNDPTMGKKDNPNPRLRKADIRTGQRWHLNDNGDGDTEYSLHRDWPDM
>NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein
MTSVFLTRRAVLSGGALLGMSALLAACGQQAANEASVSASSSATPSETASASATATESASASATPSPRVTRGYSGNSKAPDGEYRKADGYGPAQNVPEPRKEPAQYPETEDGIDHMMQDWLTAHNYAIQTGDCAPVFRYVEKTSKEYPFYEYIDDLYKRGGWVVDGLDAYRAEGDLIYDDQQKFYRMKVRRFWTTVMYVDSNGKITKQANTNKDDDKFNFFFSYSNGYWKIIGSGYSDTPENNEE
>NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein
MTSVFLTRRAMLSGGALLGLSALFAACGQQANNEAAATASAAPSETALASAAVSEAATSTPSPVITRGYSGGSKAPDGEYRKADGKGPAQNVPEPRKEPAQYPETEEGLMKMMQDWIVAHNYGIQTGDCSYAFKYVSEESEEYGFYKYIETLYKNGGWAVNSLDSYQSESTLFYDESQKIYRMKVHRIWSTEIYIESNGDITRRANTDTSDDTFYFLYTYSDGYWKIINSKYEHEL
>NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein
MTSVILTRRAMLSGGTLLGLGALFAACGQQASNEAAATASAVPSETTSASATASESPSASATPSTVRGYSGGSKAPDGEYRPADKYGPAQNVPKPSAPEEGYNEKSLEGMRKTMDAWILWGNYGTQTGNYSMAFKFMSPTFEDERKAYTGVEDLYKRGGWVIGGINHYLADGNPWSEDGETYFWKAYREWDYETYVESDGSWRKWSNDDKTDDTFKFELKHNGQKWEIMNYEPVDD
>NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase
MAKKTKGKKSGAATAAVALLTETNTPFQMREYEHVEGVTSFGEEAAKNLGASEEQVFKTLLIVHEKDFAVAIVPVSGKLNIKAAAAALGWKSASMCDPKVAERRTGYVVGGISPLGQKTPSPTLLDESAQLFDTIMVSGGKRGLDVELAPDDLLKLTNGKYADIRA
>NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MGNSLPGVGAIAKNWREVLKPEEYAVLREGGTERAFTGEYWNTHTEGVYSCRACGTELFRSDQKFDSHCGWPSFFAPLAEDRVRYLEDTTFGMRRVEVRCAACDSHLGHVFEGEGYPTPTDLRYCINSVCLTLTPAGEAQLGDTPVDEAESAE
>NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D
MSTAAEQNAAGTPQLTLHGIEVPEVVPLEAPSSPIPTLITTESGLRRAAEQLAAASGPVAVDTERAQGIRYGARAFLVQLKREDQLYLIDPEAFKDLRIINDALADAEWVIHAAIQDFPSLDMLGMRPNRLFDTELGARLAGLERVNLGATVEELLGYKLAKKHSKEDWSRRPLPESWLNYALLDVDVLIDLRDALEDLLRQQGKLQYALEEFEYLCKTPVKDPTDQPERWRKTKGRTMLRSVKQLTALRNLWHERDSLARKKDVDAKRLLPDSAIVEAARTMPRNVPAIMSIPGFQTRGLRREGPRWVRAIAAAARGENAVPFTLPSTAPPPLKAWESKRPENLALFTEVRQAIDELSEKLTIPAQNLITTDYVRRLCWEPPARFDEQTLRDALAEYGARSWQTGLVAPVIAPIFARHLG
>NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein
MPAPNGCCRSQKACTSPTASAAVKSNATESNAVDTAVDTAEIESASRVFSRRATLITGAVASGALLASCAEGDSNVTVPEGSVEMGAASAVGVGKAAKLTHGSTTVIVSQPSSGEYKAFSTVCTHQGCQVQVQDSNRIVCPCHGSEYAVADGSVIHGPAEEALTSYPVQVKGGKIFVAHTNKDS

Crispr_ID: NZ_AP014938_9

• CRISPR_ID: NZ_AP014938_9
• CRISPR_location: 116047-117960
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 26 spacers
• Cas_protein_info: cas1,cas2,csb1gr7,csb2gr5,cas3,csb3

Consensus repeat of NZ_AP014938_9

Consensus_repeat	Method
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CRISPRCasFinder
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CRT
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	PILER-CR

spacers of NZ_AP014938_9

>9.1|116083|37|NZ_AP014938|CRISPRCasFinder,CRT
TCGGCGCGTTCTTGATAAATTCATCCGGCGGTACAAG
>9.2|116156|35|NZ_AP014938|CRISPRCasFinder,CRT
TTAGCACTTTGAATGTACCGCGGATTTTCTCCGCG
>9.3|116227|37|NZ_AP014938|CRISPRCasFinder,CRT
CTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGA
>9.4|116300|35|NZ_AP014938|CRISPRCasFinder,CRT
ATCACGGCACGCTGAGCAAGCTCTGAATGTTCGTT
>9.5|116371|35|NZ_AP014938|CRISPRCasFinder,CRT
ACCGGTAACATTCTGGAGCCGGCGGTAGCTGACTG
>9.6|116442|34|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
GCTGGCCAGGTTACGACCTACTTGCACATTCCCG
>9.7|116512|37|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
TGTTGCGCGTCATGTGGAGCGAGCACGCCGGAGAAGA
>9.8|116585|37|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
CTAACCCACAAACTCATGGTCCGCACCCCGCAGTGGG
>9.9|116658|36|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
CCACGCGGCGCGCCCAGTCTCCGTCTGAGTAAAGAA
>9.10|116730|39|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
AGTGAAGGACAAGCGGCGCTTGAAGTCGTTGATGCGGGC
>9.11|116805|41|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
TTAGCGAAAGCTTCGGCGATGTCGGCACGCAGAATCTCCAC
>9.12|116882|35|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
GAGGGCGAGACGGGCGACGCACACTACGTCATCGA
>9.13|116953|35|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
GTGATTCATGTGGTGCCTTCCGATCAGGGCTACTC
>9.14|117024|37|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
TCCGCTGCGGGCGAGAGGGGGAAGGGGTTGAGAGTGC
>9.15|117097|35|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
GTGCAGATGACGATTCCACGCGATCCATAATGAGA
>9.16|117168|35|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
GATGCCCTTAGATATGCCACTAGATATGCGCTCGG
>9.17|117239|37|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
GTATCCGCGTTCGGCAGCACCGTCGCCTAGCATCAGG
>9.18|117312|38|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
CGCGGATTGTGCGCGGATTGTGCGCATAGTACACCCGC
>9.19|117386|36|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
CGTTTCGGTGGCTGTTTCCGCAGCGACCGCTGGAAA
>9.20|117458|35|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
TCGAAAGCCATAGTCGCCGCGCGGCACGCCGGGGT
>9.21|117529|36|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
TCGCGGAATGCGTCAGTGACACCTACGGTTTCTCGG
>9.22|117601|36|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
GGCTGTTTTCGCGCTCATAGGCGGCGATGCGGGTTA
>9.23|117673|37|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
TCAAAAACCACACACCGGCGGGACACTCCATCTAGGA
>9.24|117746|34|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
ACAGCTTAATCTTCTGTCCGTCGTTACCCAAAGT
>9.25|117816|37|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
TTTGACAAAGCGTTAAAAGCTCTGGCATGATATTCAC
>9.26|117889|36|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR
TGCGCCTGCACCCAGCACCGAAAAGTTCATCTCGGG

CRISPR arrays and Neighbor proteins around NZ_AP014938_9

CRISPR arrays

The CRISPR arrays of NZ_AP014938_9

>merge|NZ_AP014938|9|116047-117960|CRISPRCasFinder,CRT,PILER-CR
GTCTTATTGAAAGCCCCTACAAAACTGCAGGGAAATTCGGCGCGTTCTTGATAAATTCATCCGGCGGTACAAGGCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGAAATTTAGCACTTTGAATGTACCGCGGATTTTCTCCGCGGCCTCAAAGAAAGTCCCTACGAATAGGTAGGGAAATCTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATATCACGGCACGCTGAGCAAGCTCTGAATGTTCGTTGCCTCAATGAAAGCCCATCCCAAAAGGAAGGGAAATACCGGTAACATTCTGGAGCCGGCGGTAGCTGACTGGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGCTGGCCAGGTTACGACCTACTTGCACATTCCCGGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTGTTGCGCGTCATGTGGAGCGAGCACGCCGGAGAAGAGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCTAACCCACAAACTCATGGTCCGCACCCCGCAGTGGGGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCCACGCGGCGCGCCCAGTCTCCGTCTGAGTAAAGAAGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATAGTGAAGGACAAGCGGCGCTTGAAGTCGTTGATGCGGGCGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTTAGCGAAAGCTTCGGCGATGTCGGCACGCAGAATCTCCACGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGAGGGCGAGACGGGCGACGCACACTACGTCATCGAGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGTGATTCATGTGGTGCCTTCCGATCAGGGCTACTCGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTCCGCTGCGGGCGAGAGGGGGAAGGGGTTGAGAGTGCGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGTGCAGATGACGATTCCACGCGATCCATAATGAGAGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGATGCCCTTAGATATGCCACTAGATATGCGCTCGGGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGTATCCGCGTTCGGCAGCACCGTCGCCTAGCATCAGGGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCGCGGATTGTGCGCGGATTGTGCGCATAGTACACCCGCGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCGTTTCGGTGGCTGTTTCCGCAGCGACCGCTGGAAAGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTCGAAAGCCATAGTCGCCGCGCGGCACGCCGGGGTGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTCGCGGAATGCGTCAGTGACACCTACGGTTTCTCGGGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGGCTGTTTTCGCGCTCATAGGCGGCGATGCGGGTTAGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTCAAAAACCACACACCGGCGGGACACTCCATCTAGGAGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATACAGCTTAATCTTCTGTCCGTCGTTACCCAAAGTGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTTTGACAAAGCGTTAAAAGCTCTGGCATGATATTCACGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTGCGCCTGCACCCAGCACCGAAAAGTTCATCTCGGGGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT

>NZ_AP014938|9|9|116047-117960|CRISPRCasFinder
GTCTTATTGAAAGCCCCTACAAAACTGCAGGGAAAT	TCGGCGCGTTCTTGATAAATTCATCCGGCGGTACAAG
GCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGAAAT	TTAGCACTTTGAATGTACCGCGGATTTTCTCCGCG
GCCTCAAAGAAAGTCCCTACGAATAGGTAGGGAAAT	CTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGA
CCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	ATCACGGCACGCTGAGCAAGCTCTGAATGTTCGTT
GCCTCAATGAAAGCCCATCCCAAAAGGAAGGGAAAT	ACCGGTAACATTCTGGAGCCGGCGGTAGCTGACTG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GCTGGCCAGGTTACGACCTACTTGCACATTCCCG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TGTTGCGCGTCATGTGGAGCGAGCACGCCGGAGAAGA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CTAACCCACAAACTCATGGTCCGCACCCCGCAGTGGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CCACGCGGCGCGCCCAGTCTCCGTCTGAGTAAAGAA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	AGTGAAGGACAAGCGGCGCTTGAAGTCGTTGATGCGGGC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TTAGCGAAAGCTTCGGCGATGTCGGCACGCAGAATCTCCAC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GAGGGCGAGACGGGCGACGCACACTACGTCATCGA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GTGATTCATGTGGTGCCTTCCGATCAGGGCTACTC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TCCGCTGCGGGCGAGAGGGGGAAGGGGTTGAGAGTGC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GTGCAGATGACGATTCCACGCGATCCATAATGAGA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GATGCCCTTAGATATGCCACTAGATATGCGCTCGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GTATCCGCGTTCGGCAGCACCGTCGCCTAGCATCAGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CGCGGATTGTGCGCGGATTGTGCGCATAGTACACCCGC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CGTTTCGGTGGCTGTTTCCGCAGCGACCGCTGGAAA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TCGAAAGCCATAGTCGCCGCGCGGCACGCCGGGGT
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TCGCGGAATGCGTCAGTGACACCTACGGTTTCTCGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GGCTGTTTTCGCGCTCATAGGCGGCGATGCGGGTTA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TCAAAAACCACACACCGGCGGGACACTCCATCTAGGA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	ACAGCTTAATCTTCTGTCCGTCGTTACCCAAAGT
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TTTGACAAAGCGTTAAAAGCTCTGGCATGATATTCAC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TGCGCCTGCACCCAGCACCGAAAAGTTCATCTCGGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT

>NZ_AP014938|9|3|116047-117960|CRT
GTCTTATTGAAAGCCCCTACAAAACTGCAGGGAAAT	TCGGCGCGTTCTTGATAAATTCATCCGGCGGTACAAG
GCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGAAAT	TTAGCACTTTGAATGTACCGCGGATTTTCTCCGCG
GCCTCAAAGAAAGTCCCTACGAATAGGTAGGGAAAT	CTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGA
CCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	ATCACGGCACGCTGAGCAAGCTCTGAATGTTCGTT
GCCTCAATGAAAGCCCATCCCAAAAGGAAGGGAAAT	ACCGGTAACATTCTGGAGCCGGCGGTAGCTGACTG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GCTGGCCAGGTTACGACCTACTTGCACATTCCCG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TGTTGCGCGTCATGTGGAGCGAGCACGCCGGAGAAGA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CTAACCCACAAACTCATGGTCCGCACCCCGCAGTGGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CCACGCGGCGCGCCCAGTCTCCGTCTGAGTAAAGAA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	AGTGAAGGACAAGCGGCGCTTGAAGTCGTTGATGCGGGC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TTAGCGAAAGCTTCGGCGATGTCGGCACGCAGAATCTCCAC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GAGGGCGAGACGGGCGACGCACACTACGTCATCGA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GTGATTCATGTGGTGCCTTCCGATCAGGGCTACTC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TCCGCTGCGGGCGAGAGGGGGAAGGGGTTGAGAGTGC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GTGCAGATGACGATTCCACGCGATCCATAATGAGA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GATGCCCTTAGATATGCCACTAGATATGCGCTCGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GTATCCGCGTTCGGCAGCACCGTCGCCTAGCATCAGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CGCGGATTGTGCGCGGATTGTGCGCATAGTACACCCGC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CGTTTCGGTGGCTGTTTCCGCAGCGACCGCTGGAAA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TCGAAAGCCATAGTCGCCGCGCGGCACGCCGGGGT
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TCGCGGAATGCGTCAGTGACACCTACGGTTTCTCGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GGCTGTTTTCGCGCTCATAGGCGGCGATGCGGGTTA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TCAAAAACCACACACCGGCGGGACACTCCATCTAGGA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	ACAGCTTAATCTTCTGTCCGTCGTTACCCAAAGT
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TTTGACAAAGCGTTAAAAGCTCTGGCATGATATTCAC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TGCGCCTGCACCCAGCACCGAAAAGTTCATCTCGGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT

>NZ_AP014938|9|5|116406-117960|PILER-CR
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GCTGGCCAGGTTACGACCTACTTGCACATTCCCG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TGTTGCGCGTCATGTGGAGCGAGCACGCCGGAGAAGA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CTAACCCACAAACTCATGGTCCGCACCCCGCAGTGGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CCACGCGGCGCGCCCAGTCTCCGTCTGAGTAAAGAA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	AGTGAAGGACAAGCGGCGCTTGAAGTCGTTGATGCGGGC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TTAGCGAAAGCTTCGGCGATGTCGGCACGCAGAATCTCCAC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GAGGGCGAGACGGGCGACGCACACTACGTCATCGA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GTGATTCATGTGGTGCCTTCCGATCAGGGCTACTC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TCCGCTGCGGGCGAGAGGGGGAAGGGGTTGAGAGTGC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GTGCAGATGACGATTCCACGCGATCCATAATGAGA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GATGCCCTTAGATATGCCACTAGATATGCGCTCGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GTATCCGCGTTCGGCAGCACCGTCGCCTAGCATCAGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CGCGGATTGTGCGCGGATTGTGCGCATAGTACACCCGC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	CGTTTCGGTGGCTGTTTCCGCAGCGACCGCTGGAAA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TCGAAAGCCATAGTCGCCGCGCGGCACGCCGGGGT
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TCGCGGAATGCGTCAGTGACACCTACGGTTTCTCGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	GGCTGTTTTCGCGCTCATAGGCGGCGATGCGGGTTA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TCAAAAACCACACACCGGCGGGACACTCCATCTAGGA
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	ACAGCTTAATCTTCTGTCCGTCGTTACCCAAAGT
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TTTGACAAAGCGTTAAAAGCTCTGGCATGATATTCAC
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT	TGCGCCTGCACCCAGCACCGAAAAGTTCATCTCGGG
GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl|CDD|377432
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl|CDD|237976
NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl|CDD|274235
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	unknown	unknown	gnl|CDD|224402
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	unknown	unknown	gnl|CDD|237001
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	unknown	unknown	gnl|CDD|271320
NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein	unknown	unknown	gnl|CDD|239550
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl|CDD|378223
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl|CDD|376583
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	unknown	unknown	gnl|CDD|236090
NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D	unknown	unknown	gnl|CDD|223426
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl|CDD|274005
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	unknown	unknown	gnl|CDD|237000
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	unknown	unknown	gnl|CDD|235906
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	gnl|CDD|187733

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	7.6e-89	292.6	0.0
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	6.1e-17	56.9	0.0
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	1.9e-88	291.9	1.5
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	3.6e-80	265.0	8.6
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	4.6e-21	69.6	0.0
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	csb3	cd09764_csb3_CAS-I-U	2.5e-146	481.9	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter	gnl|CDD|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	1.03457e-10
NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase	gnl|CDD|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	2.01789e-68
NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein	gnl|CDD|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0.00203925
NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.62042e-84
NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000981202
NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.62642e-18
NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase	gnl|CDD|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	1.41217e-14
NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.08474e-104
NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein	gnl|CDD|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.25059e-23
NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7	gnl|CDD|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.1891e-25
NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl|CDD|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	7.1838e-77
NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE	gnl|CDD|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	1.98377e-64
NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D	gnl|CDD|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	1.21483e-67
NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl|CDD|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	4.70631e-70
NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein	gnl|CDD|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	0.00135953
NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein	gnl|CDD|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00420809
NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase	gnl|CDD|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	2.98519e-167

Protein sequences

>NZ_AP014938.1|WP_060823595.1|109904_111515_-|CRISPR-associated-endonuclease-Cas4/Cas1
MSTPYSAGDELPISLVMHTVYCPRRAWIESNGEKTDTSQMQEGQSAHKRVDDPKTSRGTQQRAVTISSTRLGLTGRCDALEPQEDGSTRIIEYKATPVRRNASVTPAHRVQLALQKICLEEAGETVSECAVHFTNHNKTVPVDISDEDIRTAEEYVHTTRALIDNPTAPQPLEDSPRCSWCSHISVCLPDESHGKENITRVVASNPDSQVAHLTTQGSRATVQQGRLIVQHLGETISSVPLERVHSLVVHGNIDVSSALLRELMWRNCTIIWCSSTGRVYGWSQPGTGPNGLARVQQHVLSAQGHLPIAAAMIASKISNQATLLRRNGHAADVCRTMRDIQKHTPQATSIPEMLGLEGEAASLYFGNFATMLKEDVLTELGWTWTGRQGRGANDPINILLNYAYGMLSSECIRAILTCGLDPHAGFLHSSSRNKPALALDLMEEFRAVIADSVVVSLINRKQVKASTFTAVGGSYRLTPEGRKTVIAAFEKRMATEITHPTYGYSVTWRRAIEVQARMLLGVINGTTREYTGVTVR
>NZ_AP014938.1|WP_081094626.1|109605_109905_-|CRISPR-associated-endonuclease-Cas2
MRDDARRTLIAYDVPSDRRRAKLAKLILSYGDRIQYSVFIVDAAPAKVRRIKDEVQDLIDPDEDSVLFCDLGLLARLDEPTFSYIGRAREVTESDALIL
>NZ_AP014938.1|WP_060823593.1|107412_107766_-|hypothetical-protein
MLTIGADPISQATSMATGVIVNLIAFVLIEMVLKPILARVGYLPEPGIPRNAHSEEMLGDGAAISALPLNIGEESAHIHVSVMSHGGTVITVLTPHSHVTLHVSGDVQKPPTTTESQ
>NZ_AP014938.1|WP_060823592.1|105769_107071_-|type-I-U-CRISPR-associated-protein-Cas7
MSQTTITLADLIENVKLGGGSVITSITELEPAAGPHASVAPAKFVDGKGNDSKSVFAYETRYIVEEVQNPDESENEDESKEPEKDVKGQPQKVVLIDSKQSELNRAEAAIEQGRQYGDEAVVKIPRAVVTYQTENGPVEYSDMELSHRIFDGHFRAGTIDDKLITENDQYRALRNSTPADMSALLNTAPAALLFGAWDSTRKSHQVRLRSALVGEIIGVLADQEPGAEHRQARRGGARVDAVAASVKLAPKDMESLVNDQEAELSPGNVGARRNDIKKAKADARISASTLGLGSIPPTLEETGAVACHRIIRSWVLSLATLRQLRFGQDETKNVAARALLAALGLNAIARAERELYIRANCDLIESAAPVVTLDQRFGKKKTFAPLTVEHTDQLLLEAIENAKKAGVADWNGQTFNVEGNPIIIKNATAEDAE
>NZ_AP014938.1|WP_081094625.1|104178_105768_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MTNLGILARFPLGVYQGHKADGSPDAFPDPARLQAALLSAAAQGPHAIIENGQLAPSDESLKALKWLEENPPTGLQLPDMCPVYRSPNKMSRFMYREVAYSEKDGRQTERRAVSDGWAVSDTIGWQYDKVPADIAETITQLCGEVPSLGEASSLTALYTGDVEPTHTIDTKSGPFEAGGMPVRVPVPGRVDALMRAHAEAYPVKVPTKAGDKTAASDTMRPSPVPTAGLGSIKYQPVEAETSTSPWEYLWLLEVDGEELKSEQYVKACSLLHKALVAAAGFGAPSLITGRYPKGHKPANSLALQYLPARYLPDYLRREVKSKGVLLVLVPASAPTDEAVELGIALRSVETLYAQDFPRLTVKLRQKRLPAQGFWDAPKTGYKRLWRTLSAAVPESRVFNRPKKTETKAWTFADAALLSMAYVWRDSFEAPEAETSRERIRSLRDQVAKKAEAKVLEAHRVTQNPAAYAYKLPRTLPAEPWRGVVDLGNLATDTTLVAIGQSRHMGGGLLVPFDVPTEEYDRRKKEEKHD
>NZ_AP014938.1|WP_060823591.1|101378_104186_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MTSPATALPSITRDEFGDFFAALNGGYDPFSWQEEVLDHICEHGVWPERINAPTGSGKSSVVDIHLFANALAAVGAAPRVPRRLCVTVGRRALVDSQATRADKILGRMGKALTDGSGEPDILRRVAEALHSFQTRNDEKGSKPFETGHIRGELSNRNLPVTDISACAIIAATPDMYGSRALFRGYGSTKAARPRETALLTMDTVMVLDEAHMNRQLLHTTQRIAELQKYEADLGVPTLQVVETTATPSTEDSESTTLGVDIEALDTPNDKELHRRVYSHKELVLHPIDKWDGKPGNSPTVNAAVDAIMERLAHREAGESSKKAYTVGCIVNHVRTAISIKEALAKNKALGKDEVQLLVGRMRPYDLKNLQAEHSGLFITEGDESVKVVVATQTLEVGIDVDFADLVTELAPASSLAQRFGRVNRLGHRTDSKVVVIEPASSDLVKKDAPPYKAVDLSNAYAWLEALNGAENPSVNPAAMVKNPPVQSSPERLLYQRPEWPDLLEFSRTDENPYDEPDLDLWLHDSLDAETAMGGVIVRDNLPSNTSAAMEILKTSYFAPSDRETFPANLKILQEILDYQDEHGVKPRKFLYRQGEISLWQDADHGAESSQSLAPGDVLLLDMGSVPFTNQGIAVTQRELPSKKDELKAVPFLDDAELYVAELYVYEKCADREKHFREYLGLSPEEAAELLDSQSTDGKKMIASELSTEAEGGQEVIAWYAEVTGKESVEGSDIAQELVLAAPVLLDDHQNDVAERTRQLAENLGLAPEFSEALELAAKYHDEGKRDLRFQQMLGADPDAEALAKSGHRSVAEAYRARSRSALPRGWRHEQLSALMVAASPEKVGEHRDLVLRIIGCSHGHGRFSFAHDAGFLLKEGYLPEGTDYEALKEQATRLFNVGYWDNLMEQTSRTYGPYATAYLEAVERAADAQISREGH
>NZ_AP014938.1|WP_060823590.1|100314_101379_-|aldehyde-dehydrogenase
MAMLTIAGDYTSALTHFALYGLSLMVEQKHPGAVTVGWSQEGQPRAQMHAEGVSEEEIAECVHSYVSSLAAEDSWVNVDQSYGAGKEAAVFSPFSPRFRGIDAEKYPDDWASHQKTRQAHLDALMERDDLLSLLWISGLGEPSYWRFEAKAPRPDHGASRWEMKTRNKGQEFVKDRLRLMCADLATWEPSAMLSGITGQTLYDSLDKKPDSRTGTGFTVPQPTDTALAFCALVGIANFPVIHQVHRIGVTPGAYPYNALHPRLMVLPVSSGKVTPARLRTVLRSHPYRRVVDEVGKAMERGSLSSDIFVSELVDEKAILREKGVQAFVAFPIVKVGSDSAPERQVLKGSAIPMG
>NZ_AP014938.1|WP_060823589.1|99405_100161_+|nicotinamide-mononucleotide-transporter
MEAKEFSEKALLFFAKSKYADLFGVALVIAIAIASGYLSTNLAKYVDWGPITSFIPLGVISVINVGISMMSTRLTGRLSNVGNVLGIINTALSGAIDYILGNKAAIITYPVTFIVYTFAIRRWQNSERGKALEPPTGTKGQLIIGGIVAGSFAFSLVTNYIGYGGKTSFLFWITTVVFGLSLSANILNALKLTMQWQFWFLYNTVQCIKALTQGNFANVGKYIFYIINSVAALLLWTRNGTASKGAVAAVA
>NZ_AP014938.1|WP_060823588.1|97839_98919_-|S-layer-homology-domain-containing-protein
MPLLTHRLSRRFFVKGASAAAAAGALTLQAQAAQADEAPANLAPATEETKGPRLVIQRATITETGMTVNYTAHGLREFLTEGTTLTVRHGYVRNDSFETLRSWPLTPEFDGDADSFSGSDQFPIELMQGEGVDHALQLDICSDPWGQEITHQIAARIPLAETKILKTSFEDVPDNHPFAEDIRMANQKKWLMPNPQTGAFEPDRPVTREELIALLNHAAGHAGVSENSDVAPFADAAGRPTANALHWARDRKITEPLTGGDKIDPTAPVSHEELAAVLFQYNAEVQLTEMKEGTGSRFRDVLGAGTLHRYVAWAGANDIVLDASGVFNPTAPTTRAELARFIRRYKLQNLLFTDFSYVS
>NZ_AP014938.1|WP_060823587.1|94334_97442_-|peptidase
MNLASSKAFKGLAVGSLALAISGVAAIPASFAAESTRAASQSSEARTITDKAMAKITQGLPGQFQVAYSKKTNKIWVAGTADRDEHVSTIARIDANSLKIEAVAELPIIKGDSGYSYEGAYGITVDDEEGTVWVTSTRDNSVAVYDQATMKQLWTNAGLSKDDPNWIEHPREVRVDHESGKAFVTGRFFVSAIDLKTKKVEKIQLEGAPDGGTRYISMNILVDGGKLYVPERTGGKLFVIDTKTFKVEKTISVKGDKDGEVRPSDVAIDHSQNEIYVSSQGVKGENSGVSVYDATTYEFKKFIPFGTQALSLDNDEANDLVYVSDFGTGKVGVIDGGAADKLIAEVTMNGGKANDLVVLPNGSVVAVDKQAGATATVPYVLDGTTGTVSTSNKVTSKPSKDKQGNEVPAKTSDIQANSILKFKVTATAGDNSEVKQVTPETREFQGYPATATKTKATDSTAPSTEAHRTVDANGSVANIIQGLPGQFQVGYSKKNHKLFVPTVGARGGLASSLARVDADTLQTEAFAELPVKKNDKGQYGYTSAYGVTVDDVDGTVWVTNTIDNSVAVYDQQTLKLIWTNEGVKEGDPNWIEHPRSVLVDHESGKAFVTGRFFVSAIDLKTKQVEKIQLEGAPDGGTRYVSMNLFLDGGKLYVPERTGGKLFVVDTKTFKVEKTIQTQGEDSTVEVRPSDVAVDHSLNEIYVSSQGVKGVNSGISVYDLTTGEFKKFVKFGTQALALEHDEDRDLVYVTDFGTGKVAVFDGRADEVIGEVEMNGAAANDVTLLKDGSVLVLDKKDRDEKVTLPYVLNGTTGEITTASEYTTLPTKDRQGNDVPASVQQLKANSILKFKVGVKDTDASAAPVGITPTSLQFAGYPTVTGVKAEESKPADPKPADPKPADPKPEDKKAEDKKAEDAKSEDKKSDAKSENTAEAKDQTSKDQASQSDSKSDAKTGAQDSKSAPDAVKADKSGSAVKNGGSDSSTGGSSVAKSEAGSSQAGSSRSALANTGANAVMPLVAFASVALIAGAALVMRRRKA
>NZ_AP014938.1|WP_005506346.1|118335_119391_-|cell-division-protein-ZapE
MPTTTVHLTDRIPRVSADELLAGFRPSERFGEVSFDSYIPDPNQPSQAEAVQKLKDFGDKINGGGAGAGFFGRLFGGKKKDSTKAGLYLDGGFGVGKTHLLASLWHYVDGPKAFGTFVEYTNLVGALTFRKTVEALSSYKLVCIDEFELDDPGDTVLMSRLMRELADAGVKLVATSNTLPGALGEGRFAAEDFKREIQVLASQFEVHRVDGEDFRHRGLPAAPEPVADDAFDAKVEEVFGGQTVGVDNFADLVEHLAKVHPSRYRQLIDGLDGIAWRDVHPITEQSVALRFVVLADRLYDKDLPIVSSGVPFDKVFTEEMLAGGYQKKYFRAVSRLTALAREGMLGEEAER
>NZ_AP014938.1|WP_060823597.1|120144_120861_+|hypothetical-protein
MDSTIFTRRTLLGSGALVGLGALLAACGQQANNEAAATASATPTETTSASAAASDATSASATPKPVVTRGYSGQSKAPDGEYRKADGYGPAQNVPKPRNEPAQYPETEEGLHHMMEDWVIAHNYAIQTGDCSYAFKYVTEDSEEYGFYVYIEELYDNGGWVINGLDSYQAESALIYDDSQKIYRMKVRRFWTTAMYVESNGKMTRKANTNTDDDSFYFLFNYSNGYWKITDTKYENDL
>NZ_AP014938.1|WP_081094627.1|120870_122058_+|hypothetical-protein
MKKINSFSLTFCVALTLFTHNLHTLPSSGSECTTKNDKGHCIKTSKNKRYPESERSGDTSQRNTQNTVAVSSDPSASEASVAKMAQEWEKEHPEQLDGAKQQYLASSAEARKAGDAECYTKGDRRPGHYVIGSLPLGDEANRIPNHVGGRYCVPNDAKTLTSNDPAQPKGPSPEEMLQEIEDQFAKTDIQAPVLKQSYNLGTGLSEDNPNVYKGDQINFYVDAPTARWEGDLMIGHVEMESYPTQMTIQYGNGDEGSFYTMGKPVSRARGKESRKTATSYAYQRSGNFHAYATVSYSGRFRVNGGDWQALDVVLTKETVDPLLVRVWWTDVGRVAGDCSYDDTRWGCKNDPTMGKKDNPNPRLRKADIRTGQRWHLNDNGDGDTEYSLHRDWPDM
>NZ_AP014938.1|WP_060823599.1|122238_122976_+|hypothetical-protein
MTSVFLTRRAVLSGGALLGMSALLAACGQQAANEASVSASSSATPSETASASATATESASASATPSPRVTRGYSGNSKAPDGEYRKADGYGPAQNVPEPRKEPAQYPETEDGIDHMMQDWLTAHNYAIQTGDCAPVFRYVEKTSKEYPFYEYIDDLYKRGGWVVDGLDAYRAEGDLIYDDQQKFYRMKVRRFWTTVMYVDSNGKITKQANTNKDDDKFNFFFSYSNGYWKIIGSGYSDTPENNEE
>NZ_AP014938.1|WP_060823600.1|123067_123778_+|hypothetical-protein
MTSVFLTRRAMLSGGALLGLSALFAACGQQANNEAAATASAAPSETALASAAVSEAATSTPSPVITRGYSGGSKAPDGEYRKADGKGPAQNVPEPRKEPAQYPETEEGLMKMMQDWIVAHNYGIQTGDCSYAFKYVSEESEEYGFYKYIETLYKNGGWAVNSLDSYQSESTLFYDESQKIYRMKVHRIWSTEIYIESNGDITRRANTDTSDDTFYFLYTYSDGYWKIINSKYEHEL
>NZ_AP014938.1|WP_060823601.1|123820_124531_+|hypothetical-protein
MTSVILTRRAMLSGGTLLGLGALFAACGQQASNEAAATASAVPSETTSASATASESPSASATPSTVRGYSGGSKAPDGEYRPADKYGPAQNVPKPSAPEEGYNEKSLEGMRKTMDAWILWGNYGTQTGNYSMAFKFMSPTFEDERKAYTGVEDLYKRGGWVIGGINHYLADGNPWSEDGETYFWKAYREWDYETYVESDGSWRKWSNDDKTDDTFKFELKHNGQKWEIMNYEPVDD
>NZ_AP014938.1|WP_005506356.1|124730_125231_+|Cys-tRNA(Pro)-deacylase
MAKKTKGKKSGAATAAVALLTETNTPFQMREYEHVEGVTSFGEEAAKNLGASEEQVFKTLLIVHEKDFAVAIVPVSGKLNIKAAAAALGWKSASMCDPKVAERRTGYVVGGISPLGQKTPSPTLLDESAQLFDTIMVSGGKRGLDVELAPDDLLKLTNGKYADIRA
>NZ_AP014938.1|WP_060823602.1|125307_125769_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MGNSLPGVGAIAKNWREVLKPEEYAVLREGGTERAFTGEYWNTHTEGVYSCRACGTELFRSDQKFDSHCGWPSFFAPLAEDRVRYLEDTTFGMRRVEVRCAACDSHLGHVFEGEGYPTPTDLRYCINSVCLTLTPAGEAQLGDTPVDEAESAE
>NZ_AP014938.1|WP_060823603.1|125982_127248_+|ribonuclease-D
MSTAAEQNAAGTPQLTLHGIEVPEVVPLEAPSSPIPTLITTESGLRRAAEQLAAASGPVAVDTERAQGIRYGARAFLVQLKREDQLYLIDPEAFKDLRIINDALADAEWVIHAAIQDFPSLDMLGMRPNRLFDTELGARLAGLERVNLGATVEELLGYKLAKKHSKEDWSRRPLPESWLNYALLDVDVLIDLRDALEDLLRQQGKLQYALEEFEYLCKTPVKDPTDQPERWRKTKGRTMLRSVKQLTALRNLWHERDSLARKKDVDAKRLLPDSAIVEAARTMPRNVPAIMSIPGFQTRGLRREGPRWVRAIAAAARGENAVPFTLPSTAPPPLKAWESKRPENLALFTEVRQAIDELSEKLTIPAQNLITTDYVRRLCWEPPARFDEQTLRDALAEYGARSWQTGLVAPVIAPIFARHLG
>NZ_AP014938.1|WP_060823604.1|127468_128023_+|Rieske-(2Fe-2S)-protein
MPAPNGCCRSQKACTSPTASAAVKSNATESNAVDTAVDTAEIESASRVFSRRATLITGAVASGALLASCAEGDSNVTVPEGSVEMGAASAVGVGKAAKLTHGSTTVIVSQPSSGEYKAFSTVCTHQGCQVQVQDSNRIVCPCHGSEYAVADGSVIHGPAEEALTSYPVQVKGGKIFVAHTNKDS

Crispr_ID: NZ_AP014938_10

• CRISPR_ID: NZ_AP014938_10
• CRISPR_location: 235369-235445
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_AP014938_10

Consensus_repeat	Method
GCGTCAGCGCCGCGGCGAAGCGTAA	CRISPRCasFinder

spacers of NZ_AP014938_10

>10.1|235394|27|NZ_AP014938|CRISPRCasFinder
GAGCTACTTCCCGCTGTACCCGCGGCC

CRISPR arrays and Neighbor proteins around NZ_AP014938_10

CRISPR arrays

The CRISPR arrays of NZ_AP014938_10

>merge|NZ_AP014938|10|235369-235445|CRISPRCasFinder
GCGTCAGCGCCGCGGCGAAGCGTAAGAGCTACTTCCCGCTGTACCCGCGGCCGCGTCAGCGCCGCGGCGAAGCGTAA

>NZ_AP014938|10|10|235369-235445|CRISPRCasFinder
GCGTCAGCGCCGCGGCGAAGCGTAA	GAGCTACTTCCCGCTGTACCCGCGGCC
GCGTCAGCGCCGCGGCGAAGCGTAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014938.1|WP_012903787.1|228200_229541_-|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl|CDD|223252
NZ_AP014938.1|WP_060823665.1|244336_245170_-|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|143483
NZ_AP014938.1|WP_081094631.1|232967_233225_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823659.1|231898_232825_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl|CDD|234723
NZ_AP014938.1|WP_060823658.1|230014_231832_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823654.1|214945_215407_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|200128
NZ_AP014938.1|WP_060823664.1|243234_244116_-|cell-division-protein-SepF	unknown	unknown	gnl|CDD|377370
NZ_AP014938.1|WP_060823657.1|222309_223305_-|HNH-endonuclease	unknown	unknown	gnl|CDD|238038
NZ_AP014938.1|WP_049345219.1|241890_242430_-|DivIVA-domain-containing-protein	unknown	unknown	gnl|CDD|377456
NZ_AP014938.1|WP_060823663.1|239850_240837_-|RluA-family-pseudouridine-synthase	unknown	unknown	gnl|CDD|223638
NZ_AP014938.1|WP_005506541.1|246204_247386_-|cell-division-protein-FtsZ	unknown	unknown	gnl|CDD|236468
NZ_AP014938.1|WP_060823662.1|236198_239741_-|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl|CDD|235554
NZ_AP014938.1|WP_145974227.1|240942_241545_-|signal-peptidase-II	unknown	unknown	gnl|CDD|237812
NZ_AP014938.1|WP_060823660.1|233483_234395_+|type-I-methionyl-aminopeptidase	unknown	unknown	gnl|CDD|235576
NZ_AP014938.1|WP_060823655.1|215692_220258_+|ATP-dependent-RNA-helicase-HrpA	unknown	unknown	gnl|CDD|273900
NZ_AP014938.1|WP_171840165.1|224593_227980_-|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	unknown	unknown	gnl|CDD|237613
NZ_AP014938.1|WP_060823666.1|245219_246068_-|laccase-domain-containing-protein	unknown	unknown	gnl|CDD|376831
NZ_AP014938.1|WP_060823656.1|220644_222006_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_049326900.1|242924_243224_-|YggT-family-protein	unknown	unknown	gnl|CDD|376765
NZ_AP014938.1|WP_005506525.1|235546_236002_-|transcriptional-repressor-NrdR	unknown	unknown	gnl|CDD|234774

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP014938.1|WP_012903787.1|228200_229541_-|type-I-glutamate--ammonia-ligase	gnl|CDD|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	0
NZ_AP014938.1|WP_060823659.1|231898_232825_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl|CDD|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	4.52297e-146
NZ_AP014938.1|WP_060823665.1|244336_245170_-|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|143483	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.	7.80735e-68
NZ_AP014938.1|WP_060823654.1|214945_215407_-|helix-turn-helix-domain-containing-protein	gnl|CDD|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	1.45069e-12
NZ_AP014938.1|WP_060823664.1|243234_244116_-|cell-division-protein-SepF	gnl|CDD|377370	pfam04472, SepF, Cell division protein SepF. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This family also includes archaeal related proteins of unknown function.	2.12685e-30
NZ_AP014938.1|WP_060823657.1|222309_223305_-|HNH-endonuclease	gnl|CDD|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	1.20698e-08
NZ_AP014938.1|WP_049345219.1|241890_242430_-|DivIVA-domain-containing-protein	gnl|CDD|377456	pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.	4.4037e-08
NZ_AP014938.1|WP_060823663.1|239850_240837_-|RluA-family-pseudouridine-synthase	gnl|CDD|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	4.8192e-106
NZ_AP014938.1|WP_005506541.1|246204_247386_-|cell-division-protein-FtsZ	gnl|CDD|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NZ_AP014938.1|WP_060823662.1|236198_239741_-|DNA-polymerase-III-subunit-alpha	gnl|CDD|235554	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.	0
NZ_AP014938.1|WP_145974227.1|240942_241545_-|signal-peptidase-II	gnl|CDD|237812	PRK14772, PRK14772, lipoprotein signal peptidase; Provisional.	5.77449e-57
NZ_AP014938.1|WP_060823660.1|233483_234395_+|type-I-methionyl-aminopeptidase	gnl|CDD|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	4.73433e-131
NZ_AP014938.1|WP_060823655.1|215692_220258_+|ATP-dependent-RNA-helicase-HrpA	gnl|CDD|273900	TIGR01967, ATP-dependent_RNA_helicase_HrpA, RNA helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. The HrpA/B homolog from Borrelia is 500 amino acids shorter but appears to be derived from HrpA rather than HrpB. [Unknown function, Enzymes of unknown specificity].	0
NZ_AP014938.1|WP_171840165.1|224593_227980_-|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	gnl|CDD|237613	PRK14109, PRK14109, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase.	0
NZ_AP014938.1|WP_060823666.1|245219_246068_-|laccase-domain-containing-protein	gnl|CDD|376831	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase. Laccases are multi-copper oxidoreductases able to oxidize a wide variety of phenolic and non-phenolic compounds and are widely distributed among both prokaryotes and eukaryotes. There are two main active catalytic sites with conserved histidines that are capable of binding four copper atoms.	1.54164e-51
NZ_AP014938.1|WP_049326900.1|242924_243224_-|YggT-family-protein	gnl|CDD|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	0.000566757
NZ_AP014938.1|WP_005506525.1|235546_236002_-|transcriptional-repressor-NrdR	gnl|CDD|234774	PRK00464, nrdR, transcriptional repressor NrdR.	1.36281e-74

Protein sequences

>NZ_AP014938.1|WP_060823660.1|233483_234395_+|type-I-methionyl-aminopeptidase
MSSTKTNTSHNLPAEPGRAPVGCLTPGRVTPMRPVPSHIVRPEYVGKPTANEGNDSNMYTPEEVERVRAAGKVAAGAIVEASKICVPGTTTDEIDVLVHEYICDHGAYPSTVDYRGYPKSVCTSLNEVICHGIPDSTVLEDGDILNLDVTAYLDGMHGDTNKTLLIGNVDEESRLLVERTEESLNRAIKAVKPGRQINVIGRVIEKYAARFGYGVVRDYTGHGVGREFHSGLIIPHYDAAPAYDTEIREGMIFTIEPMLTLGTIEWDLWDDDWTVVTRDCKRTAQFEHTLVVTADGADILTLP
>NZ_AP014938.1|WP_081094631.1|232967_233225_-|hypothetical-protein
MSEKKNRLSEAIESAVEKTLNSATEATSPHPDEYWYNLKTGEVEHGQQSAVTSLWGPFKTYEEAAHAMDRARERNEAWDKDSDWS
>NZ_AP014938.1|WP_060823659.1|231898_232825_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MTTERSSEISSPYAAQPAATSADAPATASASASAQKPFDLDTVKKVRTVHLAQAKATGQKFSMLTCYDALTAQIFDRAGIDMLLVGDSAANVVLGYESTLTITLDEMIPMVAAVSRGASRAMVVADLPFGSYEQSPQQAVASAVRLMKEGGAHAVKIEADASMTEWVRALVRTGIPVVAHVGFTPQSEHALGGFRVQGRGDASARVREDAVALAEAGAFCVLMEMVTAQTAQLVDEAVGAVPTIGIGASNVTTGQVLVWQDMMGVRSGRVPRFVKQFAQVGQVMEDAARAYREQVRSGEFPAAEHTFE
>NZ_AP014938.1|WP_060823658.1|230014_231832_+|hypothetical-protein
MLHSILLPSTVQLPLASSIVAADPTGLEWLLLIAAPVVFCIVYLACIMAIAAFGPLVMRNNKSGGATYLLDRPSRVAFRTRTVAFFAVVGAFVELLWLGYTGRVGSIAVIPILLFTWSWKFAFFFLPLQLIRAWYVHATRGKYDSLSAEGAQRREKLNRKSAYEVSKMMQREPQQFAMSKELHTLARGQKIAGVRPFQNLDEAGKKRRTNYTVELAVALMQARAMNPGKLPSEAFGESILGMGVGITSDRAVEQTWLTLCTERVNAPDAPNYPDSLYPVAARFSLFTTMSLLQPVMGRPYSPFTAKDARRFVPRDFSADTVLLKTEELGKKALAQSAIFRQIHERLLPLHQQQPQLVDGRALAYCGALQATVAKAEAESQRLTSQILAAAASERGILSYGLFSQIAEDYQCVQRLLNLMVKATADIERFINAVEALVQMHSGPVQPSGIAYEKAQMEYIAALLDVIVFSSHAPLAGSIQASYALLKADYEAFTFNTTDELSRSYWLQYAKNAVNACDTGLSQGYEGFFGTDDAAKKAWESYAEDVVKEVCTYSITQLYWDALVQQALIQRDLPREFEDASSAIPELMNKNAAASFPTYYINLIWN
>NZ_AP014938.1|WP_012903787.1|228200_229541_-|type-I-glutamate--ammonia-ligase
MDRQQEFVLRTIEERDIRFIRLWFTDVVGTLKSVALAPAEVESAFDEGLGFDGSSIEGFSRIYESDMLLQPDPSTFQILPWRGEEDYTSRMFCDVLTPDGEISASDTRGVLKRVLNKAAEMGFTCYTSPEIEFYLLESSKLGADGFPVPVDYESYFDHTPGGIVQDFRRKAVTMLEEVGISVEFSHHETGPGQNEIDLRHADALQTADNVMTFRTVIKEVAYSLGMYATFMPKPFTKYAGSGMHTHFSLFEGDTNAFFEAGAEYQLSKTARHFIAGVLKHAPEFTAVTNQFINSYKRLWGGGEAPSYVSWGHNNRSALVRVPLYKPNKMQSARIEYRGLDSASNPYLAYAVILAAGLKGIENEYPLMPAVTEDLAAMTNAERRAMGYNPLPASLREAINITEESEFMAEVLGEQVFEQFLRNKRADWDQYQAQVTPYELKHNLGIL
>NZ_AP014938.1|WP_171840165.1|224593_227980_-|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase
MTDSSHYPATGLIRIIDPAKEPKPLTDIAPDALDDEQRAEAERKAQLRMHTRMIATGFHDPSKAERWLNAPELKHVSQDALFAGLHLAPSPDIALPALVRLIEKHPAVAERANRGKEEFGMYRLLGASQAIGDFLYRRPELIDPLFDTQVYPAESVLIRSQHPASILPETDGEFLTPIAPLDTPYRRDILTALGADPRAERPRAAAEQTGKDGYVTLRVAYRAALARIALLDVCCEDPVEMMPTIGRHLADLAAAALEGALAIARTEVAEGLGPGLVAPRRGEAVDALDLAIIGMGKCGARELNYISDVDVVYVVAPVEPAAAPNTGAANTGVEGESAPLKLTENECSAIGTELVHALTRAIMGPAPEPALWEVDANLRPEGKDGPLVRTVESYVQYYKRWAENWEFQALLKARPIAGSAQLGARYARAIDPFVWESAARDSFVESVQAMRARVTDNIPSHQVDRQIKLGPGGLRDIEFTVQLLQLVHGRTDPAVRTKSTVDSLAALTAVSYISRTDAEAFSRDYKKLRVLEHRIQLQQLRRTHLMPEKDAEQRALARSILSPERNGTLSAEQMLKAWQKIKRNVRSLHERIFFRPLLAAVSTLSRDEVVLSEQAAQDRLAALGYRDPRGAMRHIKALTTGLSRSADIQRHLMPVLLGWFACGVDADAGLLGFRIVSESLGSTSWYLRMLRDSPAAAERLSQLLSSSRLMTDLLEDASASIAWLDKVADLKPLGEEALASEISSLLARHEDAAEAMRAVRYLRRRETLRTAMGWTLGIVDIEDTCAGLAAIDECTIGAALQIALRELQAAQESTEPAEAAEATEAAEAEEAAGEKLLTRIAVIGMGRLGGAENGFGSDADVMFVHEPLDGADEDAAQEQAARIVNRTLALLKQPVKPAIRAERPLEVDADLRPEGKQGAIVRSLDSYRSYYERWAETWEFQALTRARPIAGDEELGHAFVELIDPYRYPATFTPEQVQQIRRMKARVENERMPHGADRTRQLKLGRGGLSDVEWLVQLVQLRHAHAVPGLRTTSTLKALDAAVEAGLVEAADAEILSGAWLLATKIRGGNVLRGVRQSDTLPSGRDDLEAIARWCGYPAGSARALEEDYLRQTRNARKVYERLFFEEL
>NZ_AP014938.1|WP_060823657.1|222309_223305_-|HNH-endonuclease
MKSFLKGFGIFFAVCLAFSLWYVILGVVIIVLILGIILTIRKNRYFASPEFQTHRQRTATLASEYNEVASYIHDIYTRGIYELGTPTNGMYSHLATVEVQQPKTWQTLLQKKPEGRHPHVYTASASTIQEAERDPIGSLTKYFHIEADLQTLKDVQRLSDDIARLETAIDNVRRREDDMLAHINPPQFITKQYANEFWNKLNVCHVGLTVPYPVYRFEYASPGGKENRAVTVTLDTPTLDALSETLERKIRWAWPEGGERTLMTAQLRQRIKERDNYTCQNPGCSNSIMRERILILEVVHKVPLSEGGNNEPENLQTLCWRCVRGRNVRLA
>NZ_AP014938.1|WP_060823656.1|220644_222006_-|hypothetical-protein
MSTSMTRRKLVAGAAWAAPVVAASATIPSYAASVAADCTFAAHPAYNISGTDEGTKTVQSFAVPNNVHKLRFELVGGAGGTNNRMTPAGSGAKVSGIIPVTPGSTVQIIAAAGGIGDGSLTPTAGGEGYGNGGSVPVYTIPGNITAQVDAKYADPANSKSQVYAASGGGSSALLIDGAVVAVAGGGGGAGMTSSGVSYADPWYSNLDGQIDAGVAPLGSDASPQFDAAGSASAAAGSNGTPGSEIYKAERTKVLTYNSGFGGAAGVGGAGGAAGTLPVSGPIIGFETTNSQVLFSQFVAGNAGTGGFAGNGGDGAGAYSYQLDENPASVHEKGTYEDRSWDLDIYHDEGAYAQNFNGYQSVVSGGGGAGYGGGGSGAAQSVSSIVLTQKWLNSPTGVRQGVGYTMQGGAGGAGGSYIAPSVSEGAIVSAENAPQWMRERGNGSVTVTFCEAAA
>NZ_AP014938.1|WP_060823655.1|215692_220258_+|ATP-dependent-RNA-helicase-HrpA
MSEQKSTKKHADTSKAPRTAPTMASMAAAIHAAKVRSSEKTGAKTSAKTGEKTAAKTAESNAVNNGAPKKGAQKNSAQKNNADRQNSSRGASERNSNASRSNRRGGGPNRARKQGNQQGGNQSNQGNQQGGNQQNRPAPRRYEPLIPEVITYPEELPVSERREDIMNAIRDNQVVIIAGETGSGKTTQIPKMCLDLGLGAKGLIGHTQPRRLAARSVAERIAEELGQKIGETVGYQVRFTSEVGEHSAIKLMTDGILLAEIQTDKLLRRYSTLIIDEAHERSLNIDFILGYLKRILPQRPDLKVIITSATIDPERFARHFSPSYVPGKGIVDENLSAEEREIAEAILPDDAPPIIEVSGRTYPVEIRYRPLDEEDYLSDDEIEDDHDPTDGILDAIKELSKEAPGDILIFFSGEREIRDAKDAIEAMVLKSPRLNYEVLPLYARLSLAEQHRVFSPGSRPRIVLATNVAETSLTVPGIKYVIDTGTARISRYSARTKVQRLPIERISQASANQRSGRCGRVSDGIAIRLYSEEDFNSRPEFTDPEILRTNLAAVILQMIAIGVVREPGDISRFPFVQPPASRAINDGVNLLRELGALTERPRAPRKVRGNSATLTAIGRAMAAFPVDPRLARMIIEGGRRGCAKEMMVLAAALTIQDPRERPADVRAEADAMHARFIDDTSDFSSFLLLWDYINEQQAALSSSQLRKMCHREFINYLRIREWQDLFAQLREMGRTANIHASGGRDINASAHEIDIHKSLLSGLLSHVGAKEEREKDSKGRNRGPREYLGARGTKFAIFPGSGLFKKSPDWVLSAELVETSRLWARTNASIDPQWIEEIGKHLISVQYSEPHWSLSSGAAVAYAKGTLFGLTIYADRPVQYARVDAAAARELFIQSALVEGQWHTQHKFYLRNQRALAEVEELEARLRRRDLRVDDSVLFAFYDARIPAHVTDVRSFDKWWKQARLEDDNYLDFNPEKLINEEAADYDDSQFPRQWVQRTDSGELTLDLRYEYAPTAGIGGARTDAAKRDGVAVQVPILFLNQLSPEPFRWQIPGLRHELVTALIKSLPKAIRRNFVPAPDVARAACAALEEDYSPATDELIPSLALVLRRLRGVVVEPEAFNWDAVPEHLKMGFQVRNARNKILGEGKDLRALQQQLHKEIRSALADSLGASDDTMAKMVALAQGGTGSSGNSGSSAASAKKGAKNAQGGTAQTAQPTDAHGSQVREISGLTEFPADLFPNGEIPRKVQRIIATQAVNGYPALVDEETSVGLRIFPTEAEQLHAQRRGIIRLLQLQVPSPVRYVSEHLSHKEKIVFTQNPHGSIDELIRDCTVAALDHLVPHTPIFTYAEYSELYEHVRAELIETVFDVTKLVAEILSEATALKKAIKKATSLTTMHAVSDVKAQMENLVYPGFVAKTGYDQLVHIPRYLKAAQVRLTKLGPNLHRDNQLMLTVQDLEDSYDNAVKSLPAGTIVPDALHRVNWMIEELRVSFFAQELGTAYTVSEKRIAKAQREALDAIKR
>NZ_AP014938.1|WP_060823654.1|214945_215407_-|helix-turn-helix-domain-containing-protein
MPSPKTYPATRAAVLDCCEDGQQEEIHHRCEELFQALVHASLRTHFDRLSAEETLYLVTGDGERVQISPEMYGPLTSVARAFADRKDVCVVRQDRLMTTQEAADYLGVSRPTVVRLLERGDIPFERINTHRRVAFDDLERYRLEHEYVNRRVR
>NZ_AP014938.1|WP_005506525.1|235546_236002_-|transcriptional-repressor-NrdR
MYCPYCKHTDSRVVDSRTTDDGAAIRRRRQCTSCARRFTTVETTTISVIKRSGVTEPFDRSKIAAGVRKACQGRPVGEDDLAKLAQEVEELIRARGLAEINAHEVGLTILEPLSKLDAVAYLRFASVYQAFENLEDFEEAIARLREDRIAQ
>NZ_AP014938.1|WP_060823662.1|236198_239741_-|DNA-polymerase-III-subunit-alpha
MATKEFTHLHVHTEYSMLDGAARLGDLFTHAKELGMKSMATSDHGFLFGAFDFWRQAKAHDIKPIIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRASSIASLEGQLYKPRMDREVLQTYSKGLIATTGCPSGEVQTRLRLGQFDEAVQAASEFRDIFGKDNFYCEVMDHGLDIERNVQEDLHRLAKKLNLPFVATNDLHYTRQEDHTAHAALLCVQSGSTLTDPKRFKFDADNFYLRSAEEMYALFGDIPGACENTLEIAERCNVEFNTKANYMPNFPVPEGENEESWFVKEVEKGLHYRFPQGVPDAVRKQAEYEVGVITSMGFPGYFLVVADFINWAKRNGIRVGPGRGSGAGSMVAYAMRITDLNPLDHDLIFERFLNPDRVSMPDFDVDFDDRRRGEVIDYVTEKYGEEKVAQIVTFGTIKAKQALKDASRVMDQPYSVGERLTKAMPPDVMGKNIALANVYNEEDKRYAEAADLRALIEDPVDKIYGQVFETAKGLEGLKRQWGVHAAGVIMSSKDLIDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDAVENIKANRGIDLDLESLSLDDPESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFEHISAVLALYRPGPMGANSHTNYALRKNGKQEIEPIHPELEEPLKDILDTTYGLIVYQEQVMAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYATFHDGMISNGYSEGAIKALWDILLPFSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGITVLAPDVNESTLTFAPVGDDIRFGMGAIRNVGANVVEGMIAAREEKGRYESFNDFLKKVPLQVCNKRTIESLIKAGAFDDLGHTRRSLSLIHEAAVDAAVAVKRKEAAGQFDLFGSLGMDDALGDELTVTIPDVPEWDRREKLNFERDMLGLYVSDHPLRGLERALSDAASHSVHDIIGEDSHVRDGETVTIAGMLTGVSRRIAKSSGNQYASVELEDPSGATITVMFFSRAYETMGAALADDLICSIRGRVQRRDDGSVNMSAQELQILEISDDGRAAPITIVVPEYLVTEANLKELKETLRDHKGTADVRMLVRTRDKEQLVLLDPSVRVEPNPSLFGEIKTIFGPSCIRR
>NZ_AP014938.1|WP_060823663.1|239850_240837_-|RluA-family-pseudouridine-synthase
MSETTNAAEDSARIRAEFTVEGALAGMRLDAALAGALDAPRTRTSGWIRDGHVSVTNNGKAVKIGKSYKLSAGDEVVVDAPAPRDLADIRPEKVDGFRIVHLDEDIVVVDKPAGVAAHPSPGWHGPTVISALMGEGISVATSGAAERQGIVHRLDVGTSGLMVVARSERAYTELKRAFKERTVDKVYHTLVQGLPDPLRGTIDAPIGRHPGNEWKFAVVEDGRNSITHYDVLEAFGPASLVEVHLETGRTHQIRVHFSALRHPCCGDLTYGADPRFSAELGLTRQWLHAHRLGFDHPGTGERVTFTSEYPLDLSYALTALREGKVQLG
>NZ_AP014938.1|WP_145974227.1|240942_241545_-|signal-peptidase-II
MTNTPKTAESSVSHTATKADGRRVRILSARSAGILALVLAAVVFAIDQGTKYLVVTQMQLGERITVIDGLLWWYSIRNSGAAFSMGENVTWVFTLVMIVAASVVLYLLRRTRALSWTLALGGLLGGICGNLFDRLFREPGFGSGHVVDFISVPNFAIFNIADSAICVCMAFIVLLNFKGLNLNGTRVQADDKNAAGKSAK
>NZ_AP014938.1|WP_049345219.1|241890_242430_-|DivIVA-domain-containing-protein
MAITPEDLITKSFKIVTEESGYDRNEVDDFLDELVVELRALYSERDALERQVEQLSANAPDSPAAAVAPAQSSAASAAPQDAAALLAMAQKVHDDYVAQGEKAKAELLEEAERKADAMVSEAQQQREEVLSRLTDEKEELEIAVEALRGFESRYRSKLLQHLDAQVQELKNLKSIEASA
>NZ_AP014938.1|WP_049326900.1|242924_243224_-|YggT-family-protein
MGYIFALITIVVYVLYIAMLLRMLFDWVRMFAPEWRPKGIVLLFASGVYAVTDWPMNQLRRLIPPVRVGNVALDTGFLILIVLLSLLLSIMMRMTAAFS
>NZ_AP014938.1|WP_060823664.1|243234_244116_-|cell-division-protein-SepF
MAKQSRLAGFLGLERYQGAETTPEESPQAVQAETRREANASAGQAATAQKTDSANRLSALPGSAQYSDAESQSETYHPQDEPAYTEQEEYLQADSYDDGTETEYLDAEEPADGRATVDAAAYATAHTPETTADLAETEQTWDDASADNWEDTPVPNTEYTEQYAETYSNDGYYDQGYEPEETNGYTYGYEEEEDELRRITTIHPRSYNDAKIIGEAFRENIPVIMNVEEMPDADAKRLVDFASGLAFALEGRIERVTAKVFLLTPSNLEVLGVANSEVPAGFETDGEFPFDQG
>NZ_AP014938.1|WP_060823665.1|244336_245170_-|YggS-family-pyridoxal-phosphate-dependent-enzyme
MSEMNVEENLQYTPERAEQLLQNYRRVLERIRTAEQDHSAVRTEASAPVQLVTVTKFFPASDAAALLDGGVALFGENRDQEASAKARELAAYCAQREVQPPHWAFIGQLQTNKAKSVVKYASSVHSVDRPSLADALAKAYANQLSRFEAGEAPAPAAAEHGALTCLVQVSLAEVATAGHAAEGARGGTSASELLELVERIENHEHLRCGGVMAVAPLGMNPDEAFEKLYGLASLVREQVPHATEISAGMSGDLEAAVRWGSTCVRVGSDIMGQRPAL
>NZ_AP014938.1|WP_060823666.1|245219_246068_-|laccase-domain-containing-protein
MSDNPKTSLLASADTRTLGPWRVRVGFTSRAAGNLGLHVDDELGGGMDASLVRTLNHRAALEEALGTDPFFYLNQVHGVQIAYPEDYPVESYAPGAPEERTVERARAVLENSPVADAAISSEGVPLAIMVADCIPVVLVGERVANWQPILAVAHAGRRGLLDGVLQQTVQRMRQLGAEKITAWLGPSICGSCYEVPEAMRTESTELIPQVHAVTSQHTPGLDLPAGARAVLEDAGVEVCMDCAQCTFEEPEVYSHRGFTNRGEKPGRIAGLVWVEKAAEPAA
>NZ_AP014938.1|WP_005506541.1|246204_247386_-|cell-division-protein-FtsZ
MDAGTPQNYLAVIKVVGIGGGGVNAVNRMIEVGLRGVEFIAINTDAQALLMSDADVKLDVGRELTRGLGAGANPEVGRQAAEDHAQEIEEVLKGADMVFVTAGEGGGTGTGGAPVVARIARSLGALTIGVVTRPFTFEGRRRSNQAETGIAALRDEVDTLIVIPNDRLLSISDRNVSMLDAFKSADQVLLSGVQGITDLITTPGLINLDFADVKSVMQGAGSALMGIGSASGEDRAVKAAELAIASPLLEASIDGAHGVLLSIQGGSDLGLFEINEAARLVQEVAHPDANIIFGAVIDDALGDEARVTVIAAGFDAVNPETNSNASTAAATQAQRTQASFGGSTAPAANGYGYNAPAAAPASTGAAGFDVDLPPVVEEAPARRDTLDVPDFLK

Crispr_ID: NZ_AP014938_11

• CRISPR_ID: NZ_AP014938_11
• CRISPR_location: 669276-669428
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_AP014938_11

Consensus_repeat	Method
GGAGGAGTTACCCTCGGAGTCCTT	CRISPRCasFinder

spacers of NZ_AP014938_11

>11.1|669300|39|NZ_AP014938|CRISPRCasFinder
GGACTCAACCTTGGTGCCCTTTTCGTCGGACTCTACCTT
>11.2|669363|42|NZ_AP014938|CRISPRCasFinder
AGCGTTAACGGAAGCCTTGCCGTCTGCGCCGACCTTCACGTC

CRISPR arrays and Neighbor proteins around NZ_AP014938_11

CRISPR arrays

The CRISPR arrays of NZ_AP014938_11

>merge|NZ_AP014938|11|669276-669428|CRISPRCasFinder
GGAGGAGTTACCCTCGGAGTCCTTGGACTCAACCTTGGTGCCCTTTTCGTCGGACTCTACCTTGGAGGAGTTACCCTCGGAGTCCTTAGCGTTAACGGAAGCCTTGCCGTCTGCGCCGACCTTCACGTCTGCGGAGTTGCCTTCGCCGTCGTT

>NZ_AP014938|11|11|669276-669428|CRISPRCasFinder
GGAGGAGTTACCCTCGGAGTCCTT	GGACTCAACCTTGGTGCCCTTTTCGTCGGACTCTACCTT
GGAGGAGTTACCCTCGGAGTCCTT	AGCGTTAACGGAAGCCTTGCCGTCTGCGCCGACCTTCACGTC
TGCGGAGTTGCCTTCGCCGTCGTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014938.1|WP_060823908.1|658537_659593_+|ThiF-family-adenylyltransferase	unknown	unknown	gnl|CDD|235528
NZ_AP014938.1|WP_060823912.1|662904_663882_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823914.1|666548_667787_+|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl|CDD|376451
NZ_AP014938.1|WP_060823922.1|679030_679774_-|cAMP-binding-protein	unknown	unknown	gnl|CDD|181817
NZ_AP014938.1|WP_005509029.1|671225_671510_-|HU-family-DNA-binding-protein	unknown	unknown	gnl|CDD|259859
NZ_AP014938.1|WP_060823909.1|660002_661115_+|hypothetical-protein	unknown	unknown	gnl|CDD|284659
NZ_AP014938.1|WP_004005966.1|672084_672321_-|50S-ribosomal-protein-L28	unknown	unknown	gnl|CDD|234736
NZ_AP014938.1|WP_060823921.1|677724_678603_-|thioredoxin-domain-containing-protein	unknown	unknown	gnl|CDD|372611
NZ_AP014938.1|WP_060823911.1|662139_662841_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_005506731.1|671602_671908_-|30S-ribosomal-protein-S14	unknown	unknown	gnl|CDD|181574
NZ_AP014938.1|WP_060823915.1|667908_668661_-|hypothetical-protein	unknown	unknown	gnl|CDD|237537
NZ_AP014938.1|WP_060823919.1|674113_674944_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224045
NZ_AP014938.1|WP_060823913.1|664162_666133_-|redoxin-domain-containing-protein	unknown	unknown	gnl|CDD|271321
NZ_AP014938.1|WP_060823917.1|669895_670684_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060823907.1|657776_658547_+|thiazole-synthase	unknown	unknown	gnl|CDD|234687
NZ_AP014938.1|WP_060823910.1|661310_661976_+|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312
NZ_AP014938.1|WP_004005967.1|671910_672081_-|50S-ribosomal-protein-L33	unknown	unknown	gnl|CDD|179075
NZ_AP014938.1|WP_060823906.1|657487_657685_+|sulfur-carrier-protein-ThiS	unknown	unknown	gnl|CDD|340451
NZ_AP014938.1|WP_060823918.1|673142_673955_-|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl|CDD|238870
NZ_AP014938.1|WP_060823920.1|675083_677282_-|acyltransferase	unknown	unknown	gnl|CDD|224748

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP014938.1|WP_060823908.1|658537_659593_+|ThiF-family-adenylyltransferase	gnl|CDD|235528	PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated.	1.04925e-87
NZ_AP014938.1|WP_060823914.1|666548_667787_+|alpha-hydroxy-acid-oxidizing-protein	gnl|CDD|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	1.80538e-157
NZ_AP014938.1|WP_060823922.1|679030_679774_-|cAMP-binding-protein	gnl|CDD|181817	PRK09392, ftrB, transcriptional activator FtrB; Provisional.	0.00142593
NZ_AP014938.1|WP_005509029.1|671225_671510_-|HU-family-DNA-binding-protein	gnl|CDD|259859	cd14435, SPO1_TF1_like, Bacteriophage SPO1-encoded TF1 binds and bends DNA. This group contains proteins related to bacillus phage SPO1-encoded transcription factor 1 (TF1), a type II DNA-binding protein related to the DNA sequence specific (IHF) and non-specific (HU) domains. Type II DNA-binding proteins bind and bend DNA as dimers. Like IHF, TF1 binds DNA specifically and bends DNA sharply. Bacteriophage SPO1-encoded TF1 recognizes SPO1 phage DNA containing 5-(hydroxymethyl)-2'-deoxyuridine as opposed to thymine, Related family members includes integration host factor (IHF) and HU, also called type II DNA-binding proteins (DNABII), which are small dimeric proteins that specifically bind the DNA minor groove, inducing large bends in the DNA and serving as architectural factors in a variety of cellular processes such as recombination, initiation of replication/transcription and gene regulation. IHF binds DNA in a sequence specific manner while HU displays little or no sequence preference. IHF homologs are usually heterodimers, while HU homologs are typically homodimers (except HU heterodimers from E. coli and other enterobacteria). HU is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups).	1.11513e-35
NZ_AP014938.1|WP_060823909.1|660002_661115_+|hypothetical-protein	gnl|CDD|284659	pfam07291, MauE, Methylamine utilisation protein MauE. This family consists of several bacterial methylamine utilisation MauE proteins. Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded.	6.10829e-09
NZ_AP014938.1|WP_004005966.1|672084_672321_-|50S-ribosomal-protein-L28	gnl|CDD|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	2.60156e-31
NZ_AP014938.1|WP_060823921.1|677724_678603_-|thioredoxin-domain-containing-protein	gnl|CDD|372611	pfam13462, Thioredoxin_4, Thioredoxin.	8.15413e-17
NZ_AP014938.1|WP_060823915.1|667908_668661_-|hypothetical-protein	gnl|CDD|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.00199719
NZ_AP014938.1|WP_005506731.1|671602_671908_-|30S-ribosomal-protein-S14	gnl|CDD|181574	PRK08881, rpsN, 30S ribosomal protein S14; Reviewed.	1.79027e-53
NZ_AP014938.1|WP_060823918.1|673142_673955_-|SGNH/GDSL-hydrolase-family-protein	gnl|CDD|238870	cd01832, SGNH_hydrolase_like_1, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.	1.15203e-67
NZ_AP014938.1|WP_060823919.1|674113_674944_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	6.06864e-131
NZ_AP014938.1|WP_060823913.1|664162_666133_-|redoxin-domain-containing-protein	gnl|CDD|271321	cd14951, NHL-2_like, NHL repeat domain of NHL repeat-containing protein 2 and similar proteins. NHL repeat-containing protein 2 (NHLRC2) and related bacterial proteins; members of this eukaryotic and bacterial family are uncharacterized, the NHL repeat domain is found C-terminally of a thioredoxin domain. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	7.14654e-135
NZ_AP014938.1|WP_060823907.1|657776_658547_+|thiazole-synthase	gnl|CDD|234687	PRK00208, thiG, thiazole synthase; Reviewed.	1.04773e-141
NZ_AP014938.1|WP_060823910.1|661310_661976_+|class-I-SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.45629e-17
NZ_AP014938.1|WP_004005967.1|671910_672081_-|50S-ribosomal-protein-L33	gnl|CDD|179075	PRK00595, rpmG, 50S ribosomal protein L33; Validated.	5.46919e-22
NZ_AP014938.1|WP_060823906.1|657487_657685_+|sulfur-carrier-protein-ThiS	gnl|CDD|340451	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS. ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.	1.38037e-19
NZ_AP014938.1|WP_060823920.1|675083_677282_-|acyltransferase	gnl|CDD|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	5.42827e-58

Protein sequences

>NZ_AP014938.1|WP_060823915.1|667908_668661_-|hypothetical-protein
MKKSIAVLSLTIAGALGLAACGGNSGTNSGSSASASASASATASATASAPASTSAAATSKSTTSAAAETTKAETKTTQGTISAPSGLPSEATEALKKGQESAEQATSAGYTASKKALEQLKDESGVKKVQTSDGTVYYTDKFAAFESKDGAIVSIQNNGVWTSIDSNGTTIVVSEDGSWIKTNPKDNLYTVVKADGTASVLNTKTFEKATDVSSIETPKAPGRIDGFSGTAKTPVKPTKIGDLSEVAGAK
>NZ_AP014938.1|WP_060823914.1|666548_667787_+|alpha-hydroxy-acid-oxidizing-protein
MVQRQLPKPSELLEFMQFKKPSLDFAGNRLQSALTIYDLRRIAKRRTPAAAFDYTDGAAEGELSMTRARQAFEDIEFHPGILTDVSTVDTTTKVLGGTSALPFGIAPTGFTRLMQTEGEIAGSGAAGAAGIPFTLSTLGTTSIEDVRRVNPNGRLWFQLYVMRQREISYGLVERAAKAGYDTLFFTVDTPIAGARLRDKRNGFSIPPQLSLKTVANAIPRPWWWYDFLTTPKLEFASLSSTGGTVGELLDAAMDPSINYEDLKEIRELWPGKIVIKGVQNVEDSKKLADLGVDGILLSNHGGRQLDRAPVPFHLLPEVVREVGKDTEVMVDTGIMNGADVVASLALGAKFTLIGRAYLYGLMAGGRRGVDRTIEILSEEVRRTMRLLQVSCVEELEPKHVTQLRRLQPIPKI
>NZ_AP014938.1|WP_060823913.1|664162_666133_-|redoxin-domain-containing-protein
MSENTTRSVRVRASELEGRAWLNTGDKNLTLQDLRGKIVILDFWTLCCINCLHVLDELRPLEEEFSDVLVTVGVHSPKFEHEADPVALAAAVDRYHITHPVLDDPELTTWQAYTARAWPTLVVVDPEGYIVAHLSGEGHVQGLTSLVRELVAEHEAKGTLHRGDGPYVPRPKAAGTYAFPGKAIELPAEFGPANLFGNRERTYLVADSARHRILQVAADLNTIINTYGGGDDPINHPVKGHVDGTGTEARFNEPAGLALVPENLREQLGYDVLVADTVNHRLRSLNLSTGEVRTLAGNGVQRVIDGDNAITGDPNHIPAGVPATEIALSSPWDAVYSREAGQFIIAMAGTHQLFGYEPINGTVSIFAGSGVEGLADGPAADAWFAQPSGIIEVRDGSLWVACSETSGLRHVTFTEDGVQVTSAVGKGLFDFGFVDGDSDTARMQHPLGLTELPDGSIAVADTYNGAIRRWDPATGTLGTLERGLDEPSDLLVEEVPGEEPRLIIVETNAHQLVRASIPAKAQHVDEGAITTARPSTKLTGGILEFTSRFTVPTGQKLDTRWGDPTQLKISSTPENFILEGAGTSTGLTRTLVLNPDVTEAVLHITARAAACDGTPGGDIPEHAACHLYQQDWGIPVVVTGDEADESELVLDLRGIN
>NZ_AP014938.1|WP_060823912.1|662904_663882_+|hypothetical-protein
MRNFSPVERVLAMWMVGVVVAVSVAAAALVMTNKLVYGPTGQVREYFHALRTGNGSYARGLLGAQIPEGDASLLDGDALRRSVSSLGEVSYEVVETSEDGEHATVRASYTLEGSQQHTDFRLHRSGTHWGFFDKWAIDEASLPSVKVNIQGVEAATINNRKVAVDRGSASFPVFYPGVYAVSYDSTVYTAQKVNEVVTAQDANHSVRMELKPSDNALASVKEQVQDHLKKCTQQSTLYPGGCPFEYAFTGRVDSEVKWSVEKVADPQVSVSSAGVWSLKPMSGTAKVSFTQLDLYTGARSQVQKEIPFTLKASVEADAKAVRVSF
>NZ_AP014938.1|WP_060823911.1|662139_662841_-|hypothetical-protein
MAERAHEVPAKYGEVKELFHPRMRSYGRRIEAALPGTIVLLAALAFIFYKRPALPYTILVLLIGTIAGVNLYSVLKPTIIVITKTHVLRARTFGWFAVPLENIDHTIFVEKLYPKKAYGQKLKTVAGRLRYRSFPAMWAVDKDGKQLMRIDGRVWDGKTMREVSSKLSAQTTIYKQINVVNMDKEHKGLITFNELHPGWRSSLMTALAVIVVVILFAASFMPEELARTIYLIH
>NZ_AP014938.1|WP_060823910.1|661310_661976_+|class-I-SAM-dependent-methyltransferase
MAMMSFSAPAERDKSLWLIKKESNPNHSQWYIDRFKAMEAEGNDIAGESRLLDAMASRGAKILDAGSGPGRVGKQLHALGHRVTGVDIDPELIEEARRVCPDATWITADLVDLPEVLGIEGDATAENGFELLVCAGNVMGFLARSTRKPVVENFRRVLAPGGRAVVGYGSGPGRDYAFEQFLADAREVGLNVDNTYSSWQLHPFVEGSSEYLVAVLSRPVS
>NZ_AP014938.1|WP_060823909.1|660002_661115_+|hypothetical-protein
MLTVSTVPLVLCTALVALTLLISGIAKAKDPQSTVTGIQNLGLEKIAPTRAVSLVLPWFEIVVAAVLLLSPVRLPVVIASGLALILMLFYTVVIARALATGRTGSCNCFGSESNAPVSRYTLVRNIALLLAAAGAHASALRGGTGVVSTLLGLGNSGWTWVIGAALIAVTLEAVRRGDALAQPEPQAQVILPEPVYDENGEEQYVRMPIPHAALYLENGRHTNLRALAKNQARVLVFVSATCVGCVKFLKTMASWQERLPQVALHPVYSSLESLQTSRNAGTLPEGLTPLIDREAGARANFGNGVPLAVVLGADGLLAGGPVAGNEQVEALLTDIEEQFAEAARLAEEERQEQMRKAFAEETSNTSGDHL
>NZ_AP014938.1|WP_060823908.1|658537_659593_+|ThiF-family-adenylyltransferase
MDVNLAPTPVNPEHARLDRERTDRQRRLPGFDQDAVAAARVLVIGAGGLGCPVVQALAAAGVGYLHIVDSDSVELSNIQRQPLFGVSDVGESKAEVAARRALELCPSLTVETSVRHVDASWILDLFAASAPDCVVDCTDTFASKYLIADAAQVAGLPLVWGTVLRFGGSVSLFEPDGAHLRDIFPTIPQTVESCALAGVLGATTAVVGSLMATEVLKFMSGLPTAAGTLLTYDALSGTCTSFGAVPDPARVVPVDLSAHEVPQVLLDVREAPEREESVKHEGSLHVPLSRLSDAEGSLLPASDVPAELLSLFESVRDQRVGVFCASGARAQRFVQAYAELAGEYGVRLTAI
>NZ_AP014938.1|WP_060823907.1|657776_658547_+|thiazole-synthase
MSLTPLTIGDRTFTSRLIMGSGGATSMDLLEQALIASGTEMTTVAMRRHAAGTPIFPLLQKLNIAPLPNTAGCRTAADAVMTAMLAREALGTSWVKVEIIHDEDTLLPDTVELLSACEQLVAEDFTVLAYTSDDPVAAARLEDAGVAAVMPLGAPIGTGLGILNPHNIELIASRAQVPVVLDAGVGTASDAALAMELGCDAVLLASAVNRAEDPVAMAQAMKFAVQAGALAREAGRIPVREHAKASSPSEGFVSWM
>NZ_AP014938.1|WP_060823906.1|657487_657685_+|sulfur-carrier-protein-ThiS
MIITYNGEPLTTNAPTVFDLVMDQFGTENGVAVALNRSIVPRSTWLDVPLHEGDRVDALTAVQGG
>NZ_AP014938.1|WP_060823917.1|669895_670684_-|hypothetical-protein
MARPAQRTSAPPTNHRLRTGAAALSIAAIAALGLSACGTQNTSSPAPTATATAKASSTADAAVNAGNGKVTVKASDAASPSATASSSPGTVTVTEDGVTVNGANGTGVTADASGNATVNGGTAANGSASNNSGSSAQVDEKAGESAGSKNNSNGTSGSVTVSAANGYTVIQLDADGGWSYHTPNGDIVDVEADGSWERVGPSGNVEVNADGSWELVGTSGVVEVKADGSWERTGHGDFQVPVVPVKPAGAGADPVKPVTPRR
>NZ_AP014938.1|WP_005509029.1|671225_671510_-|HU-family-DNA-binding-protein
MAKNRTELVAEVAEKSGKSQATVNAVLDAVFQVFESSVSKGEKITIPGWMAIERTDRAARTGRNPQTGETIQIPAGHGVKLTAGSKLKAAVAKK
>NZ_AP014938.1|WP_005506731.1|671602_671908_-|30S-ribosomal-protein-S14
MAKKSKIARNEQRKVIVARYNEKRIALKKTLIDENATPEEREAARVALQKLPRNASPVRVRNRDQIDGRPRGTFQKFGISRVRFREMAHRGELPGITKSSW
>NZ_AP014938.1|WP_004005967.1|671910_672081_-|50S-ribosomal-protein-L33
MASKAKDLRPIIKLKSTAGTGYTYVTRKNRRNNPDRMVLKKYDPVVRKHVDFREER
>NZ_AP014938.1|WP_004005966.1|672084_672321_-|50S-ribosomal-protein-L28
MAAVCQVTGAVPGFGHSISHSHRRNKRRFDPNVQKKTYWVPSLRRKVTLNVSAKGIKVIDARGIDAVVAEIIARGEKI
>NZ_AP014938.1|WP_060823918.1|673142_673955_-|SGNH/GDSL-hydrolase-family-protein
MTTPLLDSNGKLNGESVRYVAIGDSFTEGVGDVDRRRPNSLRGWADRVAEGLGAVDPQAQYANLAIRGRLLIPILEEQLPHALDLKPNLVTFYGGGNDIMRPNVDIDQLMTHVDEAFATLRGEGIEVLTITGLDVQGQGPFARTRGRTATYNELLRGIAEDHGVHIIDYWRWNDFLDWRLWADDRLHMNDLGHERFASRVLAQLGLPGVVTEPVLPPEVQLTVREKVEQEARWVREFALPWIGRRLKGTSSGDGVSPKYPQWVPAASLKN
>NZ_AP014938.1|WP_060823919.1|674113_674944_-|ABC-transporter-ATP-binding-protein
MKEITERTLKVENVSLGYGETTIVKDLSLEFPKGKITAIIGPNGCGKSTLLRGVSRLLKPLNGDFTLDGKSTHEYSMKGFARMVGLMPQHPIAPEGITVADLVSRGRYPYQGLFKRNSAEDDEAVAWALEATDTMSLAERQVTELSGGQRQRVWIAMALAQETDILLLDEPTTYLDLAHQVELLDLLSELNEQRGTTMIMVLHELNLAARVADYLVAMKDGSIVAQGEAHDVLTRENLHTIFNLKAEVADPFNDGSVVVVPHPRSAPAAAGSAIAS
>NZ_AP014938.1|WP_060823920.1|675083_677282_-|acyltransferase
MSETPGTPQARASQGTYTTAPRSIKAREASDYPLEEFIESRGFRPEIQGLRAFAVLLVVLYHVWFGKVSGGVDVFLFISAFLLSLSFMRKINEGKPLNLFNYWLHVFQRLLPVATVVIAATTIASFFVLAPSRWAQTVTDAKSSLFYFQNWNLAFSSVDYYAQNASVKSPFQHFWSLSIQGQIFIIWPLLFAAVAYVVHRFRGNLFTTAVFIFNTVFVASLTFSIVETDTNQGFAYFDTRTRLWEFAIGTLLAMLTLKWKAPEKARVIMGWVGIIGLVTCGAILPVERAFPGYLALWPVISGALVIMAGRTNSRWGIDRLLVSAPLQNLGNISYALYLVHWPILILYSSAVGTSRVNVIEGTIIILVSIGLAWLLIRFVEKPLRYRKDPFVPWLMMKMRFKTIFSVKTWADQLAFILAIFLVAGVPLAAAQTWIGYRNTQSEQNAELQVQTASENYPGARAIGGAQQGLIDNPIPSGGDVKAQYEGLSDPCTGVFAPSDPALAKYCNVQKYGPEDAPLTMVIGNSHAEQALSIFKPIAEQTKTNLQTYLLGGCQYPVRSVNAGNECSEFNTKMTEEIIKRKPQTVVFIATIAQARSNDERADPSLDETVRRLTEAGIQVIGLRDNPRFEYNIYECAQKAGTDKSSCARPASDKYAAENPAKEIFDKYRDQGAVMVDLKDLYCPNGMCSPVVGNIYVYFDDNHVSKTYGRTMAQEVFQRAAEGGWLVSGKVNF
>NZ_AP014938.1|WP_060823921.1|677724_678603_-|thioredoxin-domain-containing-protein
MSTDAREKARQIAAQQAKKSPSQASRRWLQLGVLAVVLVIVGIIGFVVINGNKNTKVAESGPVPSSANEYGGIVLTKDGIVQNSSTQETRDFKQLATSTSSVTPMVNGTVAAVNTLPPGVQTAEEASKNGQPVRVTIFQDYNCVHCAEFEKKYGDEIQKLVEDGTITLEIRNLTFLDRSSPTAYSARNAAAAYSVANQVSTSDFLNYQREIFTHQGRGDMNNQQIADIASKYHASIGSDMNDGRWRPFVDVVNAESAKNGIQGTPTVFVDGDQYTSNDFSAFLKQKIEAKKK
>NZ_AP014938.1|WP_060823922.1|679030_679774_-|cAMP-binding-protein
MADEKSIYERWSEERLDPPFPKEWGLDEEDEAELLWPIWPLLFMGESDTEQYVETITDYVMDVLGLEYDGENEDSKLWEKRVEDYVEELIKRRRAFATELGITPEMQKNSNLNRAFAALEEEGVIARQNFTCCGTCASAEIWDEIDDSREWKGYIYFHQQDTESLAESGGTYVGFGSFLAYPRDEDKWNALSDAQKEEIRALHEKLSVQLLRETVIPVLEKHGLSVEWKGNYNTRPFIGGVEVYNIP

Crispr_ID: NZ_AP014938_12

• CRISPR_ID: NZ_AP014938_12
• CRISPR_location: 1291051-1291152
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_AP014938_12

Consensus_repeat	Method
GCACCCCAGGCTCAGGCACAGCAG	CRISPRCasFinder

spacers of NZ_AP014938_12

>12.1|1291075|54|NZ_AP014938|CRISPRCasFinder
ACCTACGTTGCTCCCGCAGCAGCTCCGGCTCCTGCAGCTGAGACCTCCTACGTA

CRISPR arrays and Neighbor proteins around NZ_AP014938_12

CRISPR arrays

The CRISPR arrays of NZ_AP014938_12

>merge|NZ_AP014938|12|1291051-1291152|CRISPRCasFinder
GCACCCCAGGCTCAGGCACAGCAGACCTACGTTGCTCCCGCAGCAGCTCCGGCTCCTGCAGCTGAGACCTCCTACGTAGCACCCCAGGCTGAGGCACAGCAG

>NZ_AP014938|12|12|1291051-1291152|CRISPRCasFinder
GCACCCCAGGCTCAGGCACAGCAG	ACCTACGTTGCTCCCGCAGCAGCTCCGGCTCCTGCAGCTGAGACCTCCTACGTA
GCACCCCAGGCTGAGGCACAGCAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014938.1|WP_145974242.1|1299695_1301096_+|hypothetical-protein	unknown	unknown	gnl|CDD|293817
NZ_AP014938.1|WP_049340929.1|1291718_1292747_-|DUF4031-domain-containing-protein	unknown	unknown	gnl|CDD|226789
NZ_AP014938.1|WP_060824296.1|1282233_1283223_-|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl|CDD|225002
NZ_AP014938.1|WP_060824298.1|1285735_1287235_-|sensor-histidine-kinase	unknown	unknown	gnl|CDD|223715
NZ_AP014938.1|WP_060824302.1|1289397_1290102_+|metal-dependent-transcriptional-regulator	unknown	unknown	gnl|CDD|224240
NZ_AP014938.1|WP_060824297.1|1283398_1284820_+|ribonuclease-H	unknown	unknown	gnl|CDD|260010
NZ_AP014938.1|WP_049348934.1|1293049_1293907_-|VOC-family-protein	unknown	unknown	gnl|CDD|226383
NZ_AP014938.1|WP_049357285.1|1304183_1304681_-|DNA-starvation/stationary-phase-protection-protein-Dps	unknown	unknown	gnl|CDD|153102
NZ_AP014938.1|WP_060824301.1|1288429_1289188_+|DUF3027-domain-containing-protein	unknown	unknown	gnl|CDD|378605
NZ_AP014938.1|WP_005504526.1|1285052_1285343_-|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl|CDD|274862
NZ_AP014938.1|WP_005504562.1|1298674_1299592_+|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl|CDD|180194
NZ_AP014938.1|WP_049340937.1|1302630_1303809_-|VIT1/CCC1-transporter-family-protein	unknown	unknown	gnl|CDD|153124
NZ_AP014938.1|WP_060824306.1|1304996_1305653_-|HAD-family-phosphatase	unknown	unknown	gnl|CDD|223710
NZ_AP014938.1|WP_060824304.1|1294050_1297020_+|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl|CDD|273429
NZ_AP014938.1|WP_060824295.1|1280996_1282100_+|isochorismate-synthase	unknown	unknown	gnl|CDD|224091
NZ_AP014938.1|WP_060824305.1|1301539_1302466_+|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060824294.1|1280165_1280933_+|SDR-family-oxidoreductase	unknown	unknown	gnl|CDD|236190
NZ_AP014938.1|WP_060824300.1|1288015_1288288_-|hypothetical-protein	unknown	unknown	unknown
NZ_AP014938.1|WP_060824299.1|1287236_1287941_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_AP014938.1|WP_005504561.1|1297478_1298645_+|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl|CDD|234813

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_AP014938.1|WP_145974242.1|1299695_1301096_+|hypothetical-protein	gnl|CDD|293817	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes proteins required for natural transformation competence including Neisseria gonorrhoeae ComA, Pseudomonas stutzeri ComA, Bacillus subtilis ComEC (also known as ComE operon protein 3) and Haemophilus influenza ORF2 encoded by the rec-2 gene, as well as Escherichia coli YcaI which does not mediate spontaneous plasmid transformation on nutrient-containing agar plates. It also includes the phosphorylcholine esterase (Pce) domain of choline-binding protein e from streptococcus pneumonia. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. .	5.82643e-07
NZ_AP014938.1|WP_049340929.1|1291718_1292747_-|DUF4031-domain-containing-protein	gnl|CDD|226789	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown].	1.42462e-31
NZ_AP014938.1|WP_060824296.1|1282233_1283223_-|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl|CDD|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	8.05856e-10
NZ_AP014938.1|WP_060824298.1|1285735_1287235_-|sensor-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.89253e-59
NZ_AP014938.1|WP_060824302.1|1289397_1290102_+|metal-dependent-transcriptional-regulator	gnl|CDD|224240	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription].	1.10488e-39
NZ_AP014938.1|WP_060824297.1|1283398_1284820_+|ribonuclease-H	gnl|CDD|260010	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD), residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Prokaryotic RNase H varies greatly in domain structures and substrate specificities. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability.	1.83276e-65
NZ_AP014938.1|WP_049348934.1|1293049_1293907_-|VOC-family-protein	gnl|CDD|226383	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown].	3.43431e-40
NZ_AP014938.1|WP_049357285.1|1304183_1304681_-|DNA-starvation/stationary-phase-protection-protein-Dps	gnl|CDD|153102	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	2.71773e-47
NZ_AP014938.1|WP_060824301.1|1288429_1289188_+|DUF3027-domain-containing-protein	gnl|CDD|378605	pfam11228, DUF3027, Protein of unknown function (DUF3027). This family of proteins with unknown function appears to be restricted to Actinobacteria.	3.00031e-34
NZ_AP014938.1|WP_005504526.1|1285052_1285343_-|WXG100-family-type-VII-secretion-target	gnl|CDD|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	1.53828e-13
NZ_AP014938.1|WP_005504562.1|1298674_1299592_+|succinate--CoA-ligase-subunit-alpha	gnl|CDD|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_AP014938.1|WP_049340937.1|1302630_1303809_-|VIT1/CCC1-transporter-family-protein	gnl|CDD|153124	cd02433, Nodulin-21_like_2, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	6.94718e-85
NZ_AP014938.1|WP_060824306.1|1304996_1305653_-|HAD-family-phosphatase	gnl|CDD|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	1.06217e-42
NZ_AP014938.1|WP_060824304.1|1294050_1297020_+|UvrD-helicase-domain-containing-protein	gnl|CDD|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_AP014938.1|WP_060824295.1|1280996_1282100_+|isochorismate-synthase	gnl|CDD|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	4.23434e-103
NZ_AP014938.1|WP_060824294.1|1280165_1280933_+|SDR-family-oxidoreductase	gnl|CDD|236190	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated.	1.97755e-74
NZ_AP014938.1|WP_060824299.1|1287236_1287941_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.09163e-90
NZ_AP014938.1|WP_005504561.1|1297478_1298645_+|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl|CDD|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0

Protein sequences

>NZ_AP014938.1|WP_060824302.1|1289397_1290102_+|metal-dependent-transcriptional-regulator
MTDLIDTTEMYLRTILELEEEGIVPMRARIAERLEHSGPTVSQTVARMEKHGLLTVEPDRHLELTEEGRHKAVEVMRKHRLAERLLSDIIGLELEYVHEEACRWEHVMSDKVEKRILEMLKDPKFSPYGNAIPGLEDLGHVSETNDERTVPMSLAARDSGPEDRFTISRFPESIQTDVELLKLLADAGIVYGASVSVVAGQNDDVIVHADGEEDTLSLDMDVANAIVVKRGGSL
>NZ_AP014938.1|WP_060824301.1|1288429_1289188_+|DUF3027-domain-containing-protein
MSEQVIELLPETTPATDAPAESVVPSAAPESADEGSAVPAETQPSVNDSVNAEETEAADAPAEESTSEEAEQNEDSTPDPFTPLDEEVGTPSLGVPHKLRRTSKVDEILAAAKDVALQGVQEIAPAHAIGLVHHVRAEEERLSTHLFECTLPGYRGWFWFATLSRAPRSRVATICEVGLLPGDDALIAPDWVPWADRVRPEDLEENAAQENAESDAPAEESAGEPVENNSAEKETAQNASAAEETAEAESAE
>NZ_AP014938.1|WP_060824300.1|1288015_1288288_-|hypothetical-protein
MSNEPAQDKRNTAEQTPAPLPYAGAIRWLGAGGAILALLCLLTGVAMLVMKWVGATPPALMSQIPLVLLPVAFIALMAALILSVMRRNKA
>NZ_AP014938.1|WP_060824299.1|1287236_1287941_-|response-regulator-transcription-factor
MSAEAKLLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAENPDLIVLDVMMPGMDGFEVTRRLRENGTTTPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAILRRSRSVQDEDDAVLRVDALTLNVDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDHVWEYDFNGDSSIVESYISYLRRKIDNNRENHEPLIHTKRGVGYMIRGSRG
>NZ_AP014938.1|WP_060824298.1|1285735_1287235_-|sensor-histidine-kinase
MALKPLDRIPQSLSLRTQLVLITSMLIALSIAVTSLVAISALRAQMVHQLDEEMKNSAPSLVQLATVRPSGNQEQSLSTYRLYLLDKDGNVLYSLKSEDSEQFSEPALQGWTEEKVRKQNEEAVTVNSVGSSSDWRVLAVPIESKDSSGLTEAASMVIAMPLKQTNQVVALVGVLTFAFGLATLASAIAMTWVIVTRTFEPLARVEQTAAKIAAGDLSQRIEDYNPSNEIGNLAVSLNTMLTQIEMLFKAREKSEAKMRRFVGDASHELRTPLVSIRGYSELYRQGALPTDEAVATAMSRIESESKRMGQLVEDLLTLARIDERRESKLAPFDLFNLAVDASNDAYATAPDRAVSLVGLNEEVAPTSATVLGDESRLRQVVANLLTNAMRYTPDGSPLEIAVGVREEVHGFPLSVLEVRDHGPGIHGEDRERVFERFYRTDASRSRETGGTGLGLSIVAAIIEQHEGRIHIEETDGGGATFVISLPFYPPPVSDDQLMK
>NZ_AP014938.1|WP_005504526.1|1285052_1285343_-|WXG100-family-type-VII-secretion-target
MAQFNVDSEVIAAKSAQARSYVASITADVNGMTASLHDLQSSWTGSASANFQGVLDQWHATQRQVEASITQINEALTRAGVNYADTEQANASMFVG
>NZ_AP014938.1|WP_060824297.1|1283398_1284820_+|ribonuclease-H
MNSTQEIIAAADGSALGNPGPAGWAWYIDDDHWASGGWAHGTNNMGELKAVLDLFEATASRPEAKLRVYCDSQYVINSLTKWMPGWKKKGWKKSDGKPVLNRDLLEALDQALTGRDYEFIWVKGHAGHELNEKADSLANGAARAYQEGREPAHGPGFGAAAEPTTAAEPVEAPAVEVPIVNAPVAEPALSDVALSDSAPSESSADAHLPMQEFTAAEIENAQRGVESLRLSGLLRPASAVNAPDPEAVRTRKEQLALAAERAAERDAKALARQQEETAQQASSAAQAEEEDDLTGLEEFAGLDPNDVDPAELLGETEAHAEEQAVEPAAAPAQTVEPAQVEAPVKDAPASAPAAPAAPALNPEEAAAAEQLLESRGSVMEAPQLESMLHERLVWVTATGKSVSRSSVLQYRERAFTQQGAPLKQGMQVLDSSSVLVMAAVATARGRVSRSSIWHYDAERGLWRLRFRQETPAS
>NZ_AP014938.1|WP_060824296.1|1282233_1283223_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MSYSAPETPSAQRPEHPTARPSERVQIFALPTRTMYGSLRFSWLSYLGLAEQQHAAQLPTSTAAVSYLSTQALMRAMAAARLDVPSSAASEIEVDRSCTLCTSGKKHGKPRIAGVNFNMSQVNPLVVGAFSRNSSAVLGVDVETLDARLFSGFARLALSNEERSLYERVAQERPAPVLHLFSVALWTAKEAVLKATGHGLSVVPSLVRVQLTDDLLDALKLAMNEEVPGDLLGSNTPEPTALRVLTQDSLTAQATFSAPTPQGGGEAIERSFSLQWVPVALPDAENPEHAQKMLITLAVENPAEGEPVQVEAQLLPVATPLELKRLLTD
>NZ_AP014938.1|WP_060824295.1|1280996_1282100_+|isochorismate-synthase
MTNLPDFIFSTGTRVLRASGAMTPVTFDNALDEAKRTGSAVVGLIPFDPDMPAYLFVPERLEEQQVPVPEHTVKLAEPVSVTGRQNDRFRAAVATAVERMKAGELSKIVLSRVLTARYAPGALDLEALYNNLRAQQRSAFNFAVRLPDGERGMNGSYLMGASPELVFRTEGRAFKTHPLAGSAPRIAEPGSAEDEAIRDRLFASPKDRHEHAYVINDIAERLAPIAEELNVPQVPSLLQTPQLWHLATPIDGVLKEGLTCLDGARAIHPTPAICGAPTEKAMELIRQLESFERRYFGGLVGYMDAEGNGEWALVLRCAQVSPDEAVLYAGAGIVAESDPELEHTETGTKLGSFGRALGVETLGEDTP
>NZ_AP014938.1|WP_060824294.1|1280165_1280933_+|SDR-family-oxidoreductase
MSWVIVTGANGGIGEATVHQLIKNGYSVFAADLAEQPIASFGTYGDAIFRYRAVDVTSEESVIALANDVAALDEPITGAVLAAGIAHSQPLLETSFATWKRLHAVNSDGVFLCLREFARIMIDQQETDPTNSRSLVTVASNAARVPRAEFGAYGASKASAARVSSSFGLQLAAHGIRVNSVCPGTTRTPMVTDAWEGEDRSALPVAGNPQTFRLGIPLRRIADPADIAAVNAFLISEAARHITMQEIVADGGATL
>NZ_AP014938.1|WP_049340929.1|1291718_1292747_-|DUF4031-domain-containing-protein
MSIYIDPPIWPAHGTVFSHLISDVSLAELHEFAAAAGISERAFDRDHYDVPAHLYDELVRAGAKELSGAQLTRTLIASGLRIPLKERPEKIRPRLLRAWEAAFAPRLNTPRLKHVEAPAMSQAQLTAQVAELGESLLQAWEQPHRTYHHSGHLSQMLTDLDRLYAHRTQGSTPLALVLAAWFHDAVYEGAPGEDERRSEQLASISLEPLVTAGLLSGDELQMVGLLVRATATHELPESADLPAGYEPADIQFFLDADMAILAADSARYRRYLRGVRSEYSHFDDEAFRTGRTTFLRSILGRERIFLSEEGLQLWEESAQANLQAELSEWEQNPQGLLQALAP
>NZ_AP014938.1|WP_049348934.1|1293049_1293907_-|VOC-family-protein
MTQTLPPSLSIALWCNGSADEAAQFYTRVFRDASIMEQVPGLTTLSIHGFQLSLINGDDRYVPNQSISCILNFDPLLFGGEAQARAYLDELYEELSTGGVLMELGEYPFSPRYAWVRDRFGMTWQLMLTNPAGDPRPFVVPSFMFGGTNHGNAEEATNGWISMFDDARRGTLYHYPEGSPFEADAVMFTDFNLHGTWMAATDSGTFHDFTFTPGVSVVLSCRTQEEIDYYWEQLSAIPEAERCGWCVDRWGISWQVVPHNIAELMADKAAREKILLMGKIDLSQL
>NZ_AP014938.1|WP_060824304.1|1294050_1297020_+|UvrD-helicase-domain-containing-protein
MMSDKPEQQKQPFTEQDGLFAAELVTPAAPVADDEPPFDPYYDVPPAEDDYYAPPMDAAVMNAPVMEEPAQDVPAALPTGMPAYGTPATSAPVPEPGAPAAFTAADPLGDFMPPAYRVGGYGDDFDPADPYGERAHSLNAVDPTSLTAGLNERQEEAVLHSGSPLLIVAGAGSGKTRVLTHRIAYLLATHRATPGQILAITFTNKAAAEMRERIEALVGPRAKHMWISTFHSFCVRVLRREAAALGLKSTFTIYDSTDSQRLLSLIIKELNLDTKKFTAKAVGNRISALKNELVSAEAYASRVASDNPYEKTISQIYTVYTQRLRAANSLDFDDLIGRTVFLLEKFPEIANYYRRKFRHILVDEYQDTNHAQYQLVRELVGAHTKAPADRGPYPDAVPPAELTVVGDSDQSIYAFRGADIRNITDFEKDYPNAHTILLEQNYRSTQNILSAANAVIERNPDRRPKKLWTASGAGAKIIGYVAESEHAEARYITREIDRLADEHGVQPGDVAIFYRTNAQSRTLEDMLMRAGLPYRVVGGTRFYERKEIKDALAYLRALSNPDDDVNVRRILNEPKRGIGAKSESVVAEYASANRISFYAAARQVADIPGLGAAAVKKYAEFVRLMDDLAQIARTEPAATCLEAVLEQTGYLATLRASKDIQDESRVENLSELLDAMVEFETENPGADLEQFLEHVALVADADSIPNRPASAEGENASAAQIAAEAAEAKAQGMVTLMTLHTAKGLEFPVVFLTGMEHGLFPHQRALTDEKEMSEERRLAYVGLTRAMERLYLTRSETRTMWGKSQFNPPSPFLEEIPEELIEWKRTAGFSGFGASGMGAYGARGSSYGGSSYGNSYGGGYSGGSRSGYGSGGYSGGYSSGGYSSGGSRGSYDPYESRPARRSEPSTADINGSASYGLAAATSKVTNRSRVHQSKEIPTLAVGDTVRHTKFGEGRVLAVEGSGDKTVAKVRFGSEEKRLLLRYAPLEKVS
>NZ_AP014938.1|WP_005504561.1|1297478_1298645_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MDLFEYQARELFAKHGVPVLKGIVATTPEEAKAAAEEIGGLTVIKAQVKTGGRGKAGGVKLAKSPEEAYEHAKAILGMDIKGHTVHRVLVADGADIAEEYYFSLLLDRANRSYLAMCSVEGGMEIEQLAAERPEALAKIEVDPLVGLDQAKAEEIAKAAGFSAELQEKVVPVLVKLGEVYTKEDATLVEVNPLVLTPEGTILALDGKVSLDDNAEFRQPEHEALVDKSAENPLEAKAKQFDLNYVKLDGEVGIVGNGAGLVMSTLDVVAYAGENHGNVKPANFLDIGGGASAEVMAAGLEIILGDEQVKSVFVNVFGGITACDAVADGIVKALEILGDAATKPLVVRLDGNNVAEGRRILSEANHPLVVLAETMDSGADKAAELAHKA
>NZ_AP014938.1|WP_005504562.1|1298674_1299592_+|succinate--CoA-ligase-subunit-alpha
MSIFVNKDSKVIVQGITGGEGTKHTARMLAAGTNIVGGVNARKAGTTVTHKAKDGSDIELNVFGSVAEAMEKTGANVSIVFVPPAFTKAAVLEAIEAKIGLVVVITEGVPVQDSAEFWAAAKASVDENGKQITRIIGPNCPGIISPEECLVGIIPANITGKGKIGLVSKSGTLTYQLMYELSDIGFTTAIGIGGDPIIGTTHIDALEAFEADPETEAIVMIGEIGGDAEERAAEYIKANVTKPVVGYIAGFTAPEGKTMGHAGAIVSGSSGTAQAKKEALEAAGVKVGKTPSEAANLMREIFAAK
>NZ_AP014938.1|WP_145974242.1|1299695_1301096_+|hypothetical-protein
MDISVERYHYPIGQGTFSAQIIRTSEKRYVCVYDCGSSTFGNNIEKYAKELHGKTSGIIDLLVISHLDDDHVNGIRTLYKEGFFIKKVIMPYMTKWERILFFLDKFNNDLSKGSNMFLEPRELYAFLLNNGGDGERYLEVSDETEVVFSGTDISVESVSLREGVIWAPRWEFVHFSLFSNKGDAFECSVINDFMARVRKDYKNWGELQSKETFSKEELKKLKEIYHKVYESHRKNSGGRSRKILNSNRSSIILYSGFERESFRGYVGAFRRFNFSPLKGVNYSWIATGILCTCHIGISRPMIGLFHGNCCKNYSRCFNFKYHKICKKESYEDTVMNQSGKIPITGWLGTGDAELSSTDNCWELVHKLGMWRMRHVREITVPHHGGHDGSCPFLFSLLNEQYEIICIIHSQISGKHMRRNKVIYGKYGHPIREVSKNIWEAGNLEPVHVTEDARTKYQSTTCIDISW
>NZ_AP014938.1|WP_060824305.1|1301539_1302466_+|hypothetical-protein
MTQPISRRTVAKAGVWSAPVVAASAAVPAYAASKETPGVQYGVYVSVQNNGGYVGYASSNNTGTINPASPEAHFTASGTPDSDINWDDATSKPKSATYVNGEGKFTPVTNSQTGANGAYMSSSGFWWSVPTKDTATGTGYIPGSSVTLAAGATFVTEVEYTVSASAQSLLKFGKINGQAWAPSGRKLTGKTTELVASAGQAKYLSVAQTAGTWTAEVPTVTKNSDGTYTFKGRIVYTTSKAYTMKQSGTKYYSQTNFMPAQLRFPANDGWVSYKQTSSVQVANLTYSGNGATGSESVSGQATTAEIHP
>NZ_AP014938.1|WP_049340937.1|1302630_1303809_-|VIT1/CCC1-transporter-family-protein
MSTHAQHEHGEETEKLQPENTATEAPQATRHSAVTSPSPTQIKRWRRYLADEESEARIYRYLARRAEGTDREILLQVAEAEKRHQQHWRDMLGEHADVHVRPSLQSQLLQFLAKNFGSVFILAMAQRAESRSPYAEDPDATEEMAADEAIHEEIIRALATNGREKLSGNFRAAVFGANDGLVSNLALTMGITASGASSSMVLLSGIAGLLAGALSMAAGEFVSVRSQRELLDASQPTQVTLRVAHDLDLDSNELELIYRARGMEPDAAHHRAMERFGYLDCDCDPSLSHREEEDREENVALGTDIGAAAASFAFFASGALVPILPYIFGLSGVFAMVLSLLFVGAALGFTGGVVGLLSGASPLKRGVRQILIGFGAAFVTYLLGLAFGTTVG
>NZ_AP014938.1|WP_049357285.1|1304183_1304681_-|DNA-starvation/stationary-phase-protection-protein-Dps
MAFANYTAPGLTLEEGKGISEVLQARLHDLNDLHLLLKHAHWNVTGPGFIAVHEMIDPQVDTVREFVDAIAERMATLGATPNGLAGALVAQRTVEDYPVGRARVADHLHALNDVYTRVIEAHRKAIAFAGESDPITEDLLIGQTAELEKFQWFIRAFLENGEGNI
>NZ_AP014938.1|WP_060824306.1|1304996_1305653_-|HAD-family-phosphatase
MTTTNTFPAAILFDHDGTLVDTEPVWAAAKVALTAEFGGTWTEQDTLDCLGLSMQFTLDRLRERGVNLPDEEINDRLVAKVRETLAQQPVEFLPGIERFLSEVRDAQIPAAIVTNATTSVARRTANAAPEGTFSVVIGNDETTNPKPDPQPYLLAAERLGVDPTQCVALEDSPSGVRSATAAGMRVIVVPGELEVPAELGTARLKHEELTLEAVRALA

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP014938_9	9.8|116585|37|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR	116585-116621	37	NZ_AP014938.1	987237-987273	1	0.973

1. spacer 9.8|116585|37|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR matches to position: 987237-987273, mismatch: 1, identity: 0.973

ctaacccacaaactcatggtccgcaccccgcagtggg	CRISPR spacer
ctaacccacaaactcatggttcgcaccccgcagtggg	Protospacer
********************.****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP014938_5	5.9|112686|37|NZ_AP014938|CRISPRCasFinder	112686-112722	37	NZ_CP023509	Rothia mucilaginosa strain FDAARGOS_369 plasmid unnamed, complete sequence	6487-6523	1	0.973
NZ_AP014938_8	8.9|115150|35|NZ_AP014938|CRISPRCasFinder,CRT	115150-115184	35	NZ_CP023509	Rothia mucilaginosa strain FDAARGOS_369 plasmid unnamed, complete sequence	27332-27366	1	0.971
NZ_AP014938_9	9.15|117097|35|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR	117097-117131	35	NZ_CP023509	Rothia mucilaginosa strain FDAARGOS_369 plasmid unnamed, complete sequence	32415-32449	1	0.971
NZ_AP014938_4	4.1|111894|35|NZ_AP014938|CRISPRCasFinder	111894-111928	35	NZ_CP023509	Rothia mucilaginosa strain FDAARGOS_369 plasmid unnamed, complete sequence	38877-38911	2	0.943
NZ_AP014938_8	8.21|115150|36|NZ_AP014938|PILER-CR	115150-115185	36	NZ_CP023509	Rothia mucilaginosa strain FDAARGOS_369 plasmid unnamed, complete sequence	27332-27367	2	0.944
NZ_AP014938_5	5.5|112401|36|NZ_AP014938|CRISPRCasFinder	112401-112436	36	NZ_CP035505	Kocuria indica strain CE7 plasmid pCE7, complete sequence	25411-25446	7	0.806
NZ_AP014938_8	8.14|115509|34|NZ_AP014938|CRISPRCasFinder,CRT	115509-115542	34	NZ_CP022306	Thalassococcus sp. S3 plasmid pS3C, complete sequence	2333-2366	8	0.765
NZ_AP014938_8	8.17|115725|34|NZ_AP014938|CRISPRCasFinder,CRT	115725-115758	34	MH588547	Caulobacter phage CcrSC, complete genome	66362-66395	8	0.765
NZ_AP014938_8	8.5|114857|34|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR	114857-114890	34	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	775120-775153	9	0.735
NZ_AP014938_8	8.14|115509|34|NZ_AP014938|CRISPRCasFinder,CRT	115509-115542	34	KY945355	Mycobacterium phage Shandong1, complete genome	7765-7798	9	0.735
NZ_AP014938_3	3.3|109020|35|NZ_AP014938|CRT	109020-109054	35	AY320035	Bacteriophage VWB, complete genome	31558-31592	10	0.714
NZ_AP014938_3	3.3|109020|35|NZ_AP014938|CRT	109020-109054	35	NC_005345	Streptomyces phage VWB, complete genome	31558-31592	10	0.714
NZ_AP014938_8	8.13|115437|36|NZ_AP014938|CRISPRCasFinder,CRT	115437-115472	36	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1438090-1438125	10	0.722
NZ_AP014938_8	8.13|115437|36|NZ_AP014938|CRISPRCasFinder,CRT	115437-115472	36	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1442758-1442793	10	0.722
NZ_AP014938_8	8.14|115509|34|NZ_AP014938|CRISPRCasFinder,CRT	115509-115542	34	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	251402-251435	10	0.706
NZ_AP014938_8	8.14|115509|34|NZ_AP014938|CRISPRCasFinder,CRT	115509-115542	34	NZ_CP024426	Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence	42151-42184	10	0.706
NZ_AP014938_8	8.14|115509|34|NZ_AP014938|CRISPRCasFinder,CRT	115509-115542	34	NZ_CP020445	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence	156123-156156	10	0.706
NZ_AP014938_8	8.14|115509|34|NZ_AP014938|CRISPRCasFinder,CRT	115509-115542	34	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	168651-168684	10	0.706
NZ_AP014938_8	8.25|115437|37|NZ_AP014938|PILER-CR	115437-115473	37	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1438090-1438126	11	0.703
NZ_AP014938_8	8.25|115437|37|NZ_AP014938|PILER-CR	115437-115473	37	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1442758-1442794	11	0.703
NZ_AP014938_8	8.26|115509|35|NZ_AP014938|PILER-CR	115509-115543	35	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	251402-251436	11	0.686
NZ_AP014938_8	8.26|115509|35|NZ_AP014938|PILER-CR	115509-115543	35	NZ_CP024426	Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence	42150-42184	11	0.686
NZ_AP014938_8	8.26|115509|35|NZ_AP014938|PILER-CR	115509-115543	35	NZ_CP020445	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence	156122-156156	11	0.686
NZ_AP014938_8	8.26|115509|35|NZ_AP014938|PILER-CR	115509-115543	35	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	168650-168684	11	0.686
NZ_AP014938_9	9.1|116083|37|NZ_AP014938|CRISPRCasFinder,CRT	116083-116119	37	NC_048859	Bifidobacterium phage BadAargau2, complete genome	17933-17969	12	0.676

1. spacer 5.9|112686|37|NZ_AP014938|CRISPRCasFinder matches to NZ_CP023509 (Rothia mucilaginosa strain FDAARGOS_369 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.973

tggaagagcgctacggtgcagaggtgccgctagactt	CRISPR spacer
tggaagagcgctacggtgcagaggtgccgctggactt	Protospacer
*******************************.*****

2. spacer 8.9|115150|35|NZ_AP014938|CRISPRCasFinder,CRT matches to NZ_CP023509 (Rothia mucilaginosa strain FDAARGOS_369 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

acattggccaaaaaatggtctatttcatctccggt	CRISPR spacer
acatcggccaaaaaatggtctatttcatctccggt	Protospacer
****.******************************

3. spacer 9.15|117097|35|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023509 (Rothia mucilaginosa strain FDAARGOS_369 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.971

gtgcagatgacgattccacgcgatccataatgaga	CRISPR spacer
gtgcagatgacgattccacgcgatccataatggga	Protospacer
********************************.**

4. spacer 4.1|111894|35|NZ_AP014938|CRISPRCasFinder matches to NZ_CP023509 (Rothia mucilaginosa strain FDAARGOS_369 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.943

acccattgacccggaggcatgccctccacggtgta	CRISPR spacer
acccactgacccggaggcataccctccacggtgta	Protospacer
*****.**************.**************

5. spacer 8.21|115150|36|NZ_AP014938|PILER-CR matches to NZ_CP023509 (Rothia mucilaginosa strain FDAARGOS_369 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.944

acattggccaaaaaatggtctatttcatctccggtg	CRISPR spacer
acatcggccaaaaaatggtctatttcatctccggtt	Protospacer
****.****************************** 

6. spacer 5.5|112401|36|NZ_AP014938|CRISPRCasFinder matches to NZ_CP035505 (Kocuria indica strain CE7 plasmid pCE7, complete sequence) position: , mismatch: 7, identity: 0.806

gttcaacttccacaccacgtagctggtgcattcgcc	CRISPR spacer
ggccaagcgccacatcgcgtagctggtgcattcgcc	Protospacer
* .*** . *****.*.*******************

7. spacer 8.14|115509|34|NZ_AP014938|CRISPRCasFinder,CRT matches to NZ_CP022306 (Thalassococcus sp. S3 plasmid pS3C, complete sequence) position: , mismatch: 8, identity: 0.765

cctgtgctacgcgcgccgggtcgccgggctcctt	CRISPR spacer
gccatgatctgcgcgccgggttgccgggcccctt	Protospacer
 *..** * .***********.*******.****

8. spacer 8.17|115725|34|NZ_AP014938|CRISPRCasFinder,CRT matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 8, identity: 0.765

cgttggtggggtcgggggtgctgg-ggcagctggt	CRISPR spacer
cgttggtggtgtcgggggtgatggtcacggccga-	Protospacer
********* ********** ***  .*.**.*. 

9. spacer 8.5|114857|34|NZ_AP014938|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 9, identity: 0.735

acaacaacccctcagccgcgcctcccggtcacaa	CRISPR spacer
tcgacaacccctcctccgcgcctcccgacccgac	Protospacer
 *.**********  ************..*  * 

10. spacer 8.14|115509|34|NZ_AP014938|CRISPRCasFinder,CRT matches to KY945355 (Mycobacterium phage Shandong1, complete genome) position: , mismatch: 9, identity: 0.735

cctgtgctacgcgcgccgggtcgccgggctcctt	CRISPR spacer
cgttcacgccgggcgccgggtcgccgggctgcta	Protospacer
* * ..*  ** ****************** ** 

11. spacer 3.3|109020|35|NZ_AP014938|CRT matches to AY320035 (Bacteriophage VWB, complete genome) position: , mismatch: 10, identity: 0.714

acggcgtctcgacgttcattgctggaggtgtcctt	CRISPR spacer
gccgcgtctcgacgtccattgctgggggtcgagcg	Protospacer
.* ************.*********.***    . 

12. spacer 3.3|109020|35|NZ_AP014938|CRT matches to NC_005345 (Streptomyces phage VWB, complete genome) position: , mismatch: 10, identity: 0.714

acggcgtctcgacgttcattgctggaggtgtcctt	CRISPR spacer
gccgcgtctcgacgtccattgctgggggtcgagcg	Protospacer
.* ************.*********.***    . 

13. spacer 8.13|115437|36|NZ_AP014938|CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 10, identity: 0.722

catggcggtggtcttgccgcggccactgcggcctgc	CRISPR spacer
cagcagcgtggtcttgccgcagccgctgcggcccag	Protospacer
**  .  *************.***.********.. 

14. spacer 8.13|115437|36|NZ_AP014938|CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 10, identity: 0.722

catggcggtggtcttgccgcggccactgcggcctgc	CRISPR spacer
cagcagcgtggtcttgccgcagccgctgcggcccag	Protospacer
**  .  *************.***.********.. 

15. spacer 8.14|115509|34|NZ_AP014938|CRISPRCasFinder,CRT matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 10, identity: 0.706

cctgtgctacgcgcgccgggtcgccgggctcctt	CRISPR spacer
gttccgcgacgcgcgccgggtcggcgggctggcg	Protospacer
 .* .** *************** ******  . 

16. spacer 8.14|115509|34|NZ_AP014938|CRISPRCasFinder,CRT matches to NZ_CP024426 (Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence) position: , mismatch: 10, identity: 0.706

cctgtgctacgcgcgccgggtcgccgggctcctt	CRISPR spacer
gttccgcgacgcgcgccgggtcggcgggctggcg	Protospacer
 .* .** *************** ******  . 

17. spacer 8.14|115509|34|NZ_AP014938|CRISPRCasFinder,CRT matches to NZ_CP020445 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence) position: , mismatch: 10, identity: 0.706

cctgtgctacgcgcgccgggtcgccgggctcctt	CRISPR spacer
gttccgcgacgcgcgccgggtcggcgggctggcg	Protospacer
 .* .** *************** ******  . 

18. spacer 8.14|115509|34|NZ_AP014938|CRISPRCasFinder,CRT matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

cctgtgctacgcgcgccgggtcgccgggctcctt	CRISPR spacer
gttccgcgacgcgcgccgggtcggcgggctggcg	Protospacer
 .* .** *************** ******  . 

19. spacer 8.25|115437|37|NZ_AP014938|PILER-CR matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 11, identity: 0.703

catggcggtggtcttgccgcggccactgcggcctgcg	CRISPR spacer
cagcagcgtggtcttgccgcagccgctgcggcccagc	Protospacer
**  .  *************.***.********..  

20. spacer 8.25|115437|37|NZ_AP014938|PILER-CR matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 11, identity: 0.703

catggcggtggtcttgccgcggccactgcggcctgcg	CRISPR spacer
cagcagcgtggtcttgccgcagccgctgcggcccagc	Protospacer
**  .  *************.***.********..  

21. spacer 8.26|115509|35|NZ_AP014938|PILER-CR matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 11, identity: 0.686

cctgtgctacgcgcgccgggtcgccgggctccttg	CRISPR spacer
gttccgcgacgcgcgccgggtcggcgggctggcgc	Protospacer
 .* .** *************** ******  .  

22. spacer 8.26|115509|35|NZ_AP014938|PILER-CR matches to NZ_CP024426 (Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence) position: , mismatch: 11, identity: 0.686

cctgtgctacgcgcgccgggtcgccgggctccttg	CRISPR spacer
gttccgcgacgcgcgccgggtcggcgggctggcgc	Protospacer
 .* .** *************** ******  .  

23. spacer 8.26|115509|35|NZ_AP014938|PILER-CR matches to NZ_CP020445 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence) position: , mismatch: 11, identity: 0.686

cctgtgctacgcgcgccgggtcgccgggctccttg	CRISPR spacer
gttccgcgacgcgcgccgggtcggcgggctggcgc	Protospacer
 .* .** *************** ******  .  

24. spacer 8.26|115509|35|NZ_AP014938|PILER-CR matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.686

cctgtgctacgcgcgccgggtcgccgggctccttg	CRISPR spacer
gttccgcgacgcgcgccgggtcggcgggctggcgc	Protospacer
 .* .** *************** ******  .  

25. spacer 9.1|116083|37|NZ_AP014938|CRISPRCasFinder,CRT matches to NC_048859 (Bifidobacterium phage BadAargau2, complete genome) position: , mismatch: 12, identity: 0.676

tcggcgcgttcttgataaattcatccggcggtacaag	CRISPR spacer
ccggcgtgttcttgagaaattcatccgctaccatttt	Protospacer
.*****.******** *********** .. .*.