CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_AP014832	Geminocystis sp. NIES-3709 plasmid pGM3709_11, complete sequence	0 crisprs	NA	0	0
NZ_AP014831	Geminocystis sp. NIES-3709 plasmid pGM3709_10, complete sequence	0 crisprs	NA	0	0
NZ_AP014823	Geminocystis sp. NIES-3709 plasmid pGM3709_02, complete sequence	0 crisprs	NA	0	0
NZ_AP014827	Geminocystis sp. NIES-3709 plasmid pGM3709_06, complete sequence	0 crisprs	NA	0	0
NZ_AP014826	Geminocystis sp. NIES-3709 plasmid pGM3709_05, complete sequence	0 crisprs	NA	0	0
NZ_AP014824	Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence	2 crisprs	RT,WYL	2	0
NZ_AP014828	Geminocystis sp. NIES-3709 plasmid pGM3709_07, complete sequence	0 crisprs	NA	0	0
NZ_AP014825	Geminocystis sp. NIES-3709 plasmid pGM3709_04, complete sequence	1 crisprs	NA	1	0
NZ_AP014830	Geminocystis sp. NIES-3709 plasmid pGM3709_09, complete sequence	0 crisprs	NA	0	0
NZ_AP014821	Geminocystis sp. NIES-3709	8 crisprs	DinG,csa3,c2c5_V-U5,cas3,WYL,PD-DExK,cas6,cas4,cas1,DEDDh	0	3
NZ_AP014829	Geminocystis sp. NIES-3709 plasmid pGM3709_08, complete sequence	1 crisprs	NA	2	0
NZ_AP014822	Geminocystis sp. NIES-3709 plasmid pGM3709_01, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP014821_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014821_1

225402-225617

Orphan

Consensus_repeat	Method
GGGAATAAAGTTGTATAAT	PILER-CR

3 spacers

The CRISPR arrays of NZ_AP014821_1

>merge|NZ_AP014821|1|225402-225617|PILER-CR
GGGAATAAAGTTGTATAATCTTATCGCCTGTAAGGTGCTTTTTGCGTTGTTATTTTGTGTAATAAGGGAATAAAGTTGTATAATTTCAACGATCAGAATGTCCTATTTTCGTTTTGCTTTTTCACATCCTTAAAAAATAAAGTTGTATATTTTTGAGTTTGTGGATCAACTTTTTAGACTACAGATCAGAAAAATAGGGGAATAAAGTTGTATATT

>NZ_AP014821|1|1|225402-225617|PILER-CR
GGGAATAAAGTTGTATAAT	CTTATCGCCTGTAAGGTGCTTTTTGCGTTGTTATTTTGTGTAATAA
GGGAATAAAGTTGTATAAT	TTCAACGATCAGAATGTCCTATTTTCGTTTTGCTTTTTCACATCCTTA
AAAAATAAAGTTGTATATT	TTTGAGTTTGTGGATCAACTTTTTAGACTACAGATCAGAAAAATAG
GGGAATAAAGTTGTATATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014821.1\|WP_066115359.1\|217315_219925_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_AP014821.1\|WP_066115363.1\|226996_228874_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_AP014821.1\|WP_066115358.1\|208777_216919_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380205
NZ_AP014821.1\|WP_066115348.1\|201877_202234_-\|DUF1815-family-protein	unknown	unknown	gnl\|CDD\|285990
NZ_AP014821.1\|WP_066121640.1\|231639_232104_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|376590
NZ_AP014821.1\|WP_173645689.1\|203846_205232_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|273908
NZ_AP014821.1\|WP_066115356.1\|206312_208331_-\|glycine-oxidase-ThiO	unknown	unknown	gnl\|CDD\|234687
NZ_AP014821.1\|WP_066115377.1\|234727_235213_-\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|224317
NZ_AP014821.1\|WP_066115373.1\|232693_233281_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|376578
NZ_AP014821.1\|WP_066115350.1\|202653_203739_-\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_AP014821.1\|WP_082712914.1\|219990_221427_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|366403
NZ_AP014821.1\|WP_066115367.1\|230142_230454_-\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
NZ_AP014821.1\|WP_066121636.1\|224360_225092_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|280792
NZ_AP014821.1\|WP_066115354.1\|205314_206085_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|214372
NZ_AP014821.1\|WP_066115375.1\|233660_234605_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_AP014821.1\|WP_066115365.1\|229127_230087_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_AP014821.1\|WP_066115361.1\|221511_224295_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|273292
NZ_AP014821.1\|WP_082712913.1\|225822_226662_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|372577
NZ_AP014821.1\|WP_066115371.1\|232197_232692_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|376583
NZ_AP014821.1\|WP_066115369.1\|230500_231508_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769

Protein	Function_ID	Function_description	E-value
NZ_AP014821.1\|WP_066115359.1\|217315_219925_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_AP014821.1\|WP_066115363.1\|226996_228874_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_AP014821.1\|WP_066115358.1\|208777_216919_+\|hypothetical-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.17684e-20
NZ_AP014821.1\|WP_066115348.1\|201877_202234_-\|DUF1815-family-protein	gnl\|CDD\|285990	pfam08844, DUF1815, Domain of unknown function (DUF1815). This presumed domain is about 100 amino acids in length and is functionally uncharacterized.	1.22498e-60
NZ_AP014821.1\|WP_066121640.1\|231639_232104_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	5.79534e-88
NZ_AP014821.1\|WP_173645689.1\|203846_205232_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|273908	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.5125e-93
NZ_AP014821.1\|WP_066115356.1\|206312_208331_-\|glycine-oxidase-ThiO	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	1.04653e-160
NZ_AP014821.1\|WP_066115377.1\|234727_235213_-\|DUF177-domain-containing-protein	gnl\|CDD\|224317	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only].	7.71435e-19
NZ_AP014821.1\|WP_066115373.1\|232693_233281_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|376578	pfam01625, PMSR, Peptide methionine sulfoxide reductase. This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine.	1.30666e-93
NZ_AP014821.1\|WP_066115350.1\|202653_203739_-\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_AP014821.1\|WP_082712914.1\|219990_221427_-\|diguanylate-cyclase	gnl\|CDD\|366403	pfam00990, GGDEF, Diguanylate cyclase, GGDEF domain. This domain is found linked to a wide range of non-homologous domains in a variety of bacteria. It has been shown to be homologous to the adenylyl cyclase catalytic domain and has diguanylate cyclase activity. This observation correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. In the WspR protein of Pseudomonas aeruginosa, the GGDEF domain acts as a diguanylate cyclase, Structure 3bre, when the whole molecule appears to form a tetramer consisting of two symmetrically-related dimers representing a biological unit. The active site is the GGD/EF motif, buried in the structure, and the cyclic dimeric guanosine monophosphate (c-di-GMP) bind to the inhibitory-motif RxxD on the surface. The enzyme thus catalyzes the cyclisation of two guanosine triphosphate (GTP) molecules to one c-di-GMP molecule.	2.86397e-67
NZ_AP014821.1\|WP_066115367.1\|230142_230454_-\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	9.35674e-36
NZ_AP014821.1\|WP_066121636.1\|224360_225092_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	4.68923e-36
NZ_AP014821.1\|WP_066115354.1\|205314_206085_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|214372	CHL00131, ycf16, sulfate ABC transporter protein; Validated.	3.39194e-146
NZ_AP014821.1\|WP_066115375.1\|233660_234605_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	2.92908e-75
NZ_AP014821.1\|WP_066115365.1\|229127_230087_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.30414e-37
NZ_AP014821.1\|WP_066115361.1\|221511_224295_-\|ammonium-transporter	gnl\|CDD\|273292	TIGR00836, Ammonium_transporter, ammonium transporter. The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf. [Transport and binding proteins, Cations and iron carrying compounds].	4.46171e-143
NZ_AP014821.1\|WP_082712913.1\|225822_226662_-\|IS5-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.41955e-24
NZ_AP014821.1\|WP_066115371.1\|232197_232692_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	6.65178e-78
NZ_AP014821.1\|WP_066115369.1\|230500_231508_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	7.26874e-16

>NZ_AP014821.1|WP_066121636.1|224360_225092_+|sulfite-exporter-TauE/SafE-family-protein
MFESLSTKLYYLQQLANELVANQLNHLSFFSVAIILFTGLITSLTPCMLSMLPLTIAYIGGYENKGKFSSFLQSIYFAFGLATTLAILGIFAALFGKVYGQIGIGLPILVSSIAIIMGLNLLDIIPLKFPNWDTSNWIKDNLPNSLKSYLLGLTFGLIASPCSTPVLITLLAYIANSKNLVFGAILLVSYAIGYVFPLILAGTFTGTLKNFLNLRIVTQWINPLSGAILLIFGIFSLASRFTI
>NZ_AP014821.1|WP_066115361.1|221511_224295_-|ammonium-transporter
MTDLQWILICAGLVFLMQPGFMCLESGLTRSKNNINVAVKNLADFGISVALFWMFGYGLMFGLSKAGIIGTTGFFIDIGSDSELGAFFLFQAMFCSTSTTIVSGAVAERLKFSSYIISSGIISGIIYPIFGHWAWNGMDNSHNGFTGWLGNLGFVDFAGCTVVHSIGAWVSFALLIIIGPRHGRFSVQKINGSNLPLSVLGVMLLWIAWFGFNGGSIFVFNDQVPRILVNTLMAGVAGMISGCIFGWQKYKMPEVEFLMNGTIAGLVSITASCHAVSTSEAVIIGAIGAYLMLFAKGQLEKHKIDDAVDAVAVHGMGGTWGILAVALFAQPELLGTGLNSFEQLLVQLLGILVCFIWAFGLAWLLLNLTNRFFPLRVSLEDEDIGLNVSEHRAKTEVYDLLTVMDEQIKTQDLSLRVPVEPFTEVGHIATRYNQVINSLEQSTAQLQAGNIELAQAKEKAEIANQTKSVFLANMSHELRTPMNAILGFSQIMMRSNTLLQEHKDNINIIHRSGNYLLNLINNVLDLSKIEAGKMTLNEKNFDLYTLLQEIEDLLQLKAEEKELQLNFERDENVPRYIRTDETKLRQVLINLANNAIKFTEEGGVNVLVYLTPYQPKTEDKIYITFAVEDTGAGISQEDIGKVFEAFTQTEVGRNSQEGTGLGLPISRKFVQLMGGDINIKSTLGEGSIFSFEIVTQLIKPEEVEIEQRINSRHVVGLKSGQQRYRILVVDDRPMNRLLLIKLLQPLGFELKEAGNGQEAIEIWDDWKPHLIWMDMRMPVMDGYEATQHIKGTIKGNATAIIALTASVLEEEKAVILSAGCDDFIRKPFKESVIFDAMAKHLGVEYIYEEENHTSIVTTNQPLTVENLQIMPSSWIDKLYQASVDLDDDLILELIAQIPQEHHTLIEKLTNLVDNFQLKKIRKLIEKQ
>NZ_AP014821.1|WP_082712914.1|219990_221427_-|diguanylate-cyclase
MINCDIKSLNKSINQLDLVSENNLIESILIVDDQPANLRVLSKMLESKNYKVKKAPDGESAIIAAQSNPPDLILLDILMPNMDGYEVCEKLKSDTKTKDIPVIFISALSDVFDKIKAFEVGGIDYITKPFQEEEVLARITSQLTIQTQRKLLEKERELLEKEQDNLRKEIRQRKEAEAILYQSRALISSILNASLDGIAALEAVRDPKTGEIEDFRCIVVNPVTAQIFNSQPENLTGKLVFKKFINKVKPQLFSSFIKVVETGKSLEQDIRYNYKNTQKWFHFIAVKLGDGFSVTVRDITVRKKLELKLSKLATIDGLTGVYNRHFFDNTLAQEWQRCDRGNEPLSLILCDVDYFKPYNDIYGHQAGDKCLIKVAQIMDNIVKRSSDFLARYGGEEFAIILPNTPLEGAINIAEQIRKEIQDLKIPHKHSEISDYVTLSLGIASVIPSSQNSIESLIKMADNALYQAKENGRNQVKFS
>NZ_AP014821.1|WP_066115359.1|217315_219925_+|leucine--tRNA-ligase
MQSPYQPSDIESKWQKKWSETGLYNTEENTDKPKYYALSMFPYPSGKLHMGHVRNYVITDVIARFKRMQGHRVLHPMGWDAFGLPAENAAIDRGIPPAKWTFENIAQMRSQLQELGLSIDWSREVATCSPEYYKWTQWLFLQFLEAGLAYQREAAVNWDPIDQTVLANEQVDSEGYSWRSGAKVERKLLRQWFLKITDYAEQLLDDLQQLQGWPDRVKTMQENWIGKSVGAYLEFPIMGKDEKIAVFTTRPDTVYGVTYVVLAPEHPLTQVVTTSERKEVVEAFIKEVSEESEIDRTADDKPKKGTMTGGKVINPFTGEEIPILIANYVLYEYGTGAVMGVPAHDVRDFKFAKENDLPIKVVILPDDADNGDICLLEAYTEAGIMINSGGFNGMNSIKGKEAVIRLAENNDYGKKRIQYRLRDWLISRQRYWGCPIPVIHCEDCGIVPVPSEDLPVKLPENVEFSGRGASPLAKIEDWINVPCPKCGKPAKRETDTMDTFIDSSWYFFRYTDATNQNEAFNLNTVNDWMAVDQYVGGIEHAILHLLYSRFFTKVVRDRGLVKVDEPFKRLLTQGMVQGLTYKNPETGKYVIAENVYSVEETNDKGKTETVYYEKETNQKLSVFYEKMSKSKYNGVDPEVVLSKYGADTARMFILFKAPPEKDLEWQDADVEGQYRFLNRVWLLVNDFVENPNSAKNKTFDKAKLSKEEKDLRRAIHTAIKEISDDLNGDYQFNTAVSELMKLSNALRDFSNKNSPIFREGIETLILLLAPFAPHISEELWKLSGNSNSESVHLQSWLTLDNDALIVDEITLVIQIMGKTRGTISVPASANKEELEKFAKESDIAKKHIDNKTIKKVIVVPNKLVNFVVS
>NZ_AP014821.1|WP_066115358.1|208777_216919_+|hypothetical-protein
MSTNEIASDGILTMGLDDNFPLLLKENLENNFSEFDFKNYILKLSQDDQEKLEKIKGWEIPHYKLNNKTIPLNIYIVQDGLFHNNSFYSQQDHNIYLAKSFLKNTTLNEIKSILVKSINNLPIFSSIPENASSISLSDNLESIISNVNPHTLICQCGSCSLPYGQSSNQNQATTIIINAPTTLGNTFKLHSNPNANHTIYLDFDGHFMSSSLWEDGGSLRLGSYDTDGNPNSFSNAELEEIQLMWQRAAEDFAPFNINVTTEEPTDLGDLINSGGGDTRWGIRVVMTDNLNLDTGSEITNAGGGGTAYLESFNWNYDEVALTFNQGAYEGGETISHEVGHTLGLNHDGQLPGREYYEGHGSGETSWAPIMGAGFTDGDYDNVTQWSKASEYYNGNQTEDDLAIITTNNGFGYRTDDHGNTNVTATVLDLNNLNNFGIIERNTDIDIFSFNTIGNSTFYFNINPISRALISDGAGGFSTEYLESYGANLDIWARIYDNGGNLIAQSNPANTLSANFSNLFLSAGQYYLHIDGVGIGNPLSSNPTGYTDYGSLGQYYVSGTFNPNYIALAINATNANQFEGNSGTTSFTFTVTRSGITTNTDSVNWAITGSGANPSNGGDFVGGILPSGTVSFAPGETSKVITVNVQGDTAIEPNETFTVTLSNPTNGATFISSTAIGTIQNDDGIVTLSNTTPILIDDVNVGGSTPYPSDINVSGLGGNISKISVTLNNLSHSWTGDIDILLVGPTGAKTILMSDIGENIATNGVTLTFDATAANFLNNSNITTSGNYKPNNLVGTSGVEPDFFPSPAPADSYNMDLSVFNNTNPNGIWSLYVVDDDELENVGTIAGGWSLNIETDIPTTPRINLIGNQTVVEGITNPQNVTYTVTLSQASTQTVTVQYATIDGTAIAGQDYTSSSGTLTFSPGQTSQTITIPILNDSINEPNETFTLILSDPNNGTLDNTTAITTIIDTLSTSVTTTLPANVENLTLTGTANINGTGNTGDNILLGNSGNNILNGGAGNDRMIGSSGNDIYYVDNIGDIVEETASQGIFDQVFASISYTLTENVESLTLIGTGNINGTGNNSINIITGNTGNNTLIGNGGIDSLDGGAGNDTMIGGSGNDTYYVDSLGDVVVEEVNQGIDRVFVSISYTLGDNLENLFLDGTENINGTGNSLDNNITGNSGNDTLNGGDGDDTLDGGGGNDRMVGGNGNDTYYIDSTADIVVENLNGGTDLVRVTASINYTLTSNVENLIFSSGGTFNGTGNSLNNIITRFAGPGSLSGLDGNDTLNGAASGDSLFGGNGDDILDGGEGNDTLLGDADNDTLNGGDGNDSMAGGNGNDILNGNAGNDSLTGGNGNDILNGNNGNDSMVGGSGNDTYYVDSDGDVVVENFNEGTDLVIASITYTLGANVENLTLSGTGNINGTGNGLNNIINGNNGNNFLFGGSGNDSLTGGNSDDGLSGDLGNDTLNGGTGNDIMMGGFDNDTYYVDSVGDILTENLNEGIDVVIASISYALGSNLENLILDGTANINGTGNSSNNNITGNSGNNSLNGGDGNDSLTGGSGNDNLLGSNGNDTLNGGAENDTLNGSVGNDSMVGGSGNDIYIVDALDYIVSETSTTVTEIDTVQSSITYTLGANLEHLILTGTSAINGTGNNLPNNMTGNSGNNILNGVAGNDSLTGDAGNDTLFGSSGNDTLDGGTGNDSMVGGSGNDIYIVDAVGDIVSETSTTVTEIDTVQSSITYTLGANLEHLILTGTSAINGTGNNLPNNMTGNSGNNILDGVEGNDSLTGGNGDDSLWGGADNDTLDGGEGNDTLNGGTGNDNMVGGTGNDVYIVDAMGDIVTETSTTVTEIEAVKSSITYTLGANLEHLILTDTSATNGTGNNLPNNMTGNSGNNILDGVEGNDSLTGGNGDDNLWGGADNDTLDGGEGNDTLNGGTGNDNMVGGTGNDVYIVDAMGDIVTETSTTVTEIEAVQSSITYTLGANLEHLILTGTSAINGTGNNLPNNMTGNSGNNILDGVEGNDSLTGGNGDDNLWGDADNDTLDGGEGNDTLNGGTGNDTIRGDSTFDNLTGDDTIDGGSGNDSILGGGANDFIYGGDGDDMILGQRGDDTLSGDNGNDFIDASNDNDFIYGGDGADTINGGSGNDFIDGATENDSILGGLGDDTVNGGNGDDIIIGGAGHDSLYGENGDDTINGLGENDTIDGGDGNDWILGGAGNDFIDGGVGEDTISASNDNDTILGGDGNDSIDGGSGNDSIDGGNGNDILLGYTGHDTLDGGTGNDSLVGSSGNDLYIVDAVDDIVTETSTTATEIDTIQSSIICTLGANLENLILTGTSAINGTGNTLDNNITGNSGNNILNGGDGDDTLNGGNGDDNLLGENGNNNLVGGEGNDTIDGGSGNDSILGGDANDTIDGGYGDDTILGQLGNDTLLGDNGNDFIDASNDNDFIYGGDGADTINGGSGNDFIDGATENDSMLGGLGDDTLFARDGDDIIIGGAGNDSLYGENGDDTINGFGENDTIDGGDGNDWILGGAGNDFIDGGVGEDTISASNDNDTILGGDGNDSIDGGSGNDSIDGGNGNDILLGYTDHDTLDGGNDNDTIIGSYGNDTLTGGTGNDFFRFDSPLEGIDQIADFNITDDTIQVCASGFGGGLGIGVLPSERFRVGSSPSTSDHRFFYNSSNGGLFFDVDGSDATSAVQIATLNTGLAMTNTDIVII
>NZ_AP014821.1|WP_066115356.1|206312_208331_-|glycine-oxidase-ThiO
MKTSNEIIIIGGGIIGLSIAVELKLKGLGVTVLSRNFTQAATKAAAGMLAPRAEQLPEGAMLDLALESLALYPEWARKLEQLSNEDIDYNPCGIIAPIYQQPSQTNNNWLDRDTIQLYQPHLGDEVMGGYWYPEEGQVDPRKLGKVLLTVAKLLGVDVKEGIEAIAFTRHQGRINNILTKSGIFSADTYILASGAWSSKLFPLPVRPVKGEMLSLKIPLDNPLERVIFGENTYLVPKKDGRLIIGATSEDIGWKEGNTAEGINTLLNRAIRLYPPLGTWQLDEIWYGFRPATADEMPILGYGDVDNLIFATGHYRNGILLAPITAKLISNLIIDHQADPLLQYFSYQRFNKSTLQIMTYPTPSQNNNINPNGSNLSSINSNLGDFSTKTQDSRYLTPSNASEFFSNNPQDDDNLIIAGRKFNSRLMTGTGKYPNMESMQKSVIASGCEIVTVAVRRVQTNAPGHEGLAEALDWGKIWMLPNTAGCTNAEEAVRVARLGREMAKLLGQEDNNFIKLEVIPDSKYLLPDPIGTLQAAEQLVKEGFAVLPYVNADPLLCKRLEEVGCATVMPLGSPIGSGQGIQNLANIKIIIEQAKIPVVIDAGIGTPSEAALGMELGADALLINSAIALAQNPVQMARAMGLATVAGRLGYQAGRIPVKEYASASSPLVGVVK
>NZ_AP014821.1|WP_066115354.1|205314_206085_-|Fe-S-cluster-assembly-ATPase-SufC
MNQPILSVRNLTASVDGITILKGVNLEINQGEVHAIMGRNGSGKSTFSKVLTGHPEYEVTGGEIIYKGENLLEKEPEERALEGIFLAFQYPLEIPGVSNLDFLRVAYNARCKHLGLEELDAFDFEDLVEQKLDIVKMNSAFLARSLNEGFSGGEKKRNEILQMALLEPTLGILDEIDSGLDIDALRIVAEGVNQLRKSDNAFLLITHYQRLLDYITPDFVHVMYEGKIVMSGDKNLALELEAKGYDFLEEEKLATL
>NZ_AP014821.1|WP_173645689.1|203846_205232_-|Fe-S-cluster-assembly-protein-SufD
MPNSPNSIAMLKPDTFKVTKDAYLGGLLQLSENQPLNVSGKLETLIQGIRQKGANQVVQSHLPTEKDEDWRFTDISDLQTEDWHLPIPTQLSIDVLNGFILREVSNSRLVFVNGCYAPNLSDISALPDTVYVGNLMDLDEDKINKISQYFNKNETATEVFTALNTSGLTDAFVIWVKANANVEIPIHLLHLTARDNFSIFTQPRILVVAQANSNINFIEYYGAVASGCSDSAKQKYYFTNVVTEITLEDNAQINHSRIQRESGDGFHIGNTFVSQSKNSRYTINEISLGAKLYRHNLQINQEGEETETYLNALTMLQGKQMGDTHSQVNLTKPHGTVNQLHKYIIDDSGRGVFNGKIHVPKLAQLTNATQLNRNLLLSNKARINTKPELQITADNVKCAHGATVSQLETDEIFYLRSRGLNEYDAKHLLIDAFAGEIIEKIPYESLKKRLTQCVACRTIDN
>NZ_AP014821.1|WP_066115350.1|202653_203739_-|3-isopropylmalate-dehydrogenase
MTKKYSITLLPGDGIGPEIMAVTVKVLETVAKQFDIEFQFQEALIGGSAIDATGNPLPPETVEMCKKSDSVLLAAIGGYKWDNLPREQRPETGLLGIRAALGLFANLRPATILPQLIDASSLKREVVEGVDIMVVRELTGGIYFGQPKGIFTTETGEKRGVNTMAYTESEIDRIAKVAFETAQKRQKKLCSVDKANVLDVSQLWRDRLIKMSEEYPDVELTHMYVDNAAMQLVRNPKQFDTIVTGNLFGDILSDAAAMLTGSIGMLPSASLGSDRPGLFEPVHGSAPDIAGKDKANPLAQVLSAAMMLRYGLNEPLLADKIEKAVLKVLDLGYRTGDIMSEGCISVGCKAMGNALLSVLNK
>NZ_AP014821.1|WP_066115348.1|201877_202234_-|DUF1815-family-protein
MFIRLAHQYREFVKDLVMNLQALAIVLEKRGYIASCYTCGTELTSASFMVSLGDNHLIRFLVSDYGITWTEMQDDRELMKLEGAEAISQLEELANLVKYQIKSVDSKAPSYDHSLLVH
>NZ_AP014821.1|WP_082712913.1|225822_226662_-|IS5-family-transposase
MKLERIKKLKPEKFKRRFGVKKETYNLLVEIVKKEQNNHKRGRKSKLTVSEQILVTLEYLREYRTYFHISEYWNISESTVCRTVHKIEKILLKSGYFSLGGKKELIKKENEIKAVLIDVTEIAIERPKKRQKIYYSGKKKEHTFKAQLVVNKDTLEIICYVNGRGREHDFKIFKNSRLPLSEKIKCLVDKGYQGIEKIHKLSEIPKKKTKKRKLTQEEKRKNRELNRQRIVIEHVNRKLKIFRILSEKYRNKRKRFGLRFNLIAGIYNYEIVKKDIAII
>NZ_AP014821.1|WP_066115363.1|226996_228874_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGTQIAIDILVSGLEKLEYRGYDSAGVATIVDNNIHSTRAKGKLYNLRTKLEKETNTAKIGIGHTRWATHGKPEEYNAHPHQDNKGRFAVVQNGIIENYQELKKELISKGHQFISDTDTEVIPHLIAEYYNPQSEDPFIDAVNKAITYLDGAFAIAILCADYPDELIVARQSAPLTIGFGQGEFFCASDVTALVNHTNTVLSLENGEIARLTPLGVEIYDFSGKRLRKTPRTLDWSPVTVEKQGFRHFMLKEIHEQPSVVRTCLEAYLNPDWHSETNPDENPVTLNLKSELYQDLEHIQIVACGTSWHASLVGKYLLEQIAKIPTFVQYASEFRYSPTPVMRNTITIGVTQSGETADTLAALEMERQRRSTLTTSYQPRILGITNRPESTLGSMVDQVINTYAGIEIGVAATKTFVAQVIGFYILALDLAWRRKTVTPSRMDEILKGLLQLPTQIEQIIHTEEPKVRDLAHQFPDTRDFIFLGRGINFPIALEGALKLKEISYIHAEGYPAGEMKHGPIALLDAHVPVVAIAMGGSVYEKVISNAQEAKARDARLIGVLPQNKQEDMFQDTLLVPEVEEILSPILAVIPLQLLSYYIASMRGLDVDQPRNLAKSVTVE
>NZ_AP014821.1|WP_066115365.1|229127_230087_-|pentapeptide-repeat-containing-protein
MNADEVLRLYDQGQRDFSQIDLSKEDLIQENLTQINLSRVDLNWANLSGSDFSGANLSRSDLVHTRIISAKLIGANLSYADLTYADLSWANLNGANLSRVDLSYGNLNKSSLANANFSYAKLNNCNLTGANFAGANFTRADLSGADLSGVNLTGADLTRADLSGANLLGCDLTETNFRRADLSGSQLRNADLSEAILQGVNLEKANLRGANFTGAILRNTHINQVKLSELNLKLPSKTKVIFFGANLRESNLERAILKNSILSYAILEKANLEETCLHRSNMIEAYLTSADLRGANLRNSALNGVNLTGTTMADGSIHP
>NZ_AP014821.1|WP_066115367.1|230142_230454_-|glutaredoxin-3
MLNLISKIFGNQFSYIQAKVEIYTWQTCPYCIKAKWLLWLKGCDFQEYKIDGDNTARKLMIDRANGKKTLPQIFINNISIGGCDNLYRLDQEKKLDILLSESL
>NZ_AP014821.1|WP_066115369.1|230500_231508_-|DMT-family-transporter
MQLKPDYNSSFLTSLILIAPFFLWGTAMVAMKGVIPQTTPLFMAGIRIFPAGFLVLLVAIALGKSQPKTWQGWGWISLFALVDGCMFQGFIGEGLMRTTAGLGSVMIDSQPLAVAIMSRWLFKEIIGFWGWLGLTIGILGISLIGLPDEWIINWLQGNFTNLDFNWQNLFNNGEWLMLLASLSMAVGTIMIPYVSRHVDAVVATGWHLVLGGLVLFIFSFQFETSQWVNLDLSAWLSLSYATIFGSAIAYGLFFFLASKGNLTSLSALTFLTPIFALTFGNLILGETLSTLQLQGVFLTLVSIYLINQREQINQFITPKYVKFKIAIKNQLRINN
>NZ_AP014821.1|WP_066121640.1|231639_232104_+|SsrA-binding-protein-SmpB
MTEKVTVKIISDNRQARYLYEILETYEAGIELAGTEVKSIRMGRVNLRDGYALIRNGEAWLSNVHISPYETTGRYFNHEPRRNRKLLLHKKEINKLIGLLEQKGLTLIPLKMYFKGEWIKVSLGVGKGKKLHDKRETVKRREDEREMARALKRF
>NZ_AP014821.1|WP_066115371.1|232197_232692_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKRRTFLTFAFSAFPLTFAVDQTISANQTKSTNKPEKITLSDKEWKKKLTPQQYHILRQEGTEKPFSSPLNNEKRKGIYACAGCNLPLFNSSTKYNSGTGWPSFYDSIENSLGTKRDLKLFIPRTEYHCARCGGHQGHVFGDGPNPTGKRYCNNGLALKFIPQA
>NZ_AP014821.1|WP_066115373.1|232693_233281_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MNKINKTIVIILFTFLILTPLANAKTEKATFAGGCFWCMEQPFDVIKGVFSTTSGYTGGDLKNPTYKRVTGGQTGHAESVQVQYDDNLVTYQKLLDIFWKNIDPTVQNRQFCDVGTQYRSAIFYHNEQQKKLALESKEKVAKKLKKPIFTEIKPLKEFYAAEDYHQDYYKKNPLLYKYYRYRCGRDQRLTEIWGN
>NZ_AP014821.1|WP_066115375.1|233660_234605_-|glycosyltransferase-family-2-protein
MDLSLVIPIYNEAENIPLLISAITNSLKDTPLTYEIICVDDGSEDASIEVLKNLASNTNCLKAIILRRNYGQTPAMAAGFENSTGKVIITLDGDLQNDPADIPLLLSKLEEGYDLVSGWRKNRQDDALTRLLPSKIANFIIGKITGVNLHDYGCSLKAYRTELIADLNLYGELHRFLPALAYIEGAKIAEIPVNHHARRFGKSKYGLGRTFRVIMDLLTVFFIKKFLTRPMHVFGFFGLLFMVLGVIIGVYLTFIKLGLHKSIGDRPLLILCVLLILTGVQLFSFGLLGELLMRTYHESQQRPIYRIREIVDSE
>NZ_AP014821.1|WP_066115377.1|234727_235213_-|DUF177-domain-containing-protein
MEKIYIPRLLKMPEQKEEIILNHQIAGLNSLTPVRGIFQICHRGNFLELQLQADTILTLTCDRCLQTFNHRLEVDTSEIILLKQQETDLNYPLEREILTEDLSETLPPDGEFIVDEWIYEQLSLGMPLRNLCGNDCQPPAIEAQEDTTIKDNRWSALSRLK

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Crispr_ID: NZ_AP014821_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014821_2

689986-690321

TypeV-U5

Consensus_repeat	Method
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	PILER-CR
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	CRISPRCasFinder
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	CRT

4 spacers

c2c5_V-U5

The CRISPR arrays of NZ_AP014821_2

>merge|NZ_AP014821|2|689986-690321|PILER-CR,CRISPRCasFinder,CRT
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAACAGATTTAATAGAGCAGATGATGGTGGTACTGAATTTAACTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAACATATTTATAATTAATTTTTTAGTATCTTTCATTTTTCTTTTTCTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAACTTTGACGTAAGTCGTCAAACCCACCGTATCCAGCACCTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAACATTGTTCTACCAAACCTATCATATCTTAAAGCTGTCTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC

>NZ_AP014821|2|2|689986-690321|PILER-CR
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	AGATTTAATAGAGCAGATGATGGTGGTACTGAATTTAA
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	ATATTTATAATTAATTTTTTAGTATCTTTCATTTTTCTTTTT
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	TTTGACGTAAGTCGTCAAACCCACCGTATCCAGCAC
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	ATTGTTCTACCAAACCTATCATATCTTAAAGCTGT
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC

>NZ_AP014821|2|1|689986-690321|CRISPRCasFinder
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	AGATTTAATAGAGCAGATGATGGTGGTACTGAATTTAA
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	ATATTTATAATTAATTTTTTAGTATCTTTCATTTTTCTTTTT
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	TTTGACGTAAGTCGTCAAACCCACCGTATCCAGCAC
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	ATTGTTCTACCAAACCTATCATATCTTAAAGCTGT
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC

>NZ_AP014821|2|1|689986-690321|CRT
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	AGATTTAATAGAGCAGATGATGGTGGTACTGAATTTAA
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	ATATTTATAATTAATTTTTTAGTATCTTTCATTTTTCTTTTT
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	TTTGACGTAAGTCGTCAAACCCACCGTATCCAGCAC
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC	ATTGTTCTACCAAACCTATCATATCTTAAAGCTGT
CTTTCAATCCCTAGAGAAGGTATTTTCTTATTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014821.1\|WP_066116130.1\|703503_704673_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|223353
NZ_AP014821.1\|WP_066116105.1\|687434_688124_+\|DUF4230-domain-containing-protein	unknown	unknown	gnl\|CDD\|379417
NZ_AP014821.1\|WP_066116131.1\|704783_705608_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_AP014821.1\|WP_066116116.1\|692693_693113_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NZ_AP014821.1\|WP_066116097.1\|684969_685395_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NZ_AP014821.1\|WP_066116091.1\|683765_684320_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239315
NZ_AP014821.1\|WP_066116093.1\|684391_684841_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_AP014821.1\|WP_066116103.1\|686194_687136_-\|spermidine-synthase	unknown	unknown	gnl\|CDD\|178418
NZ_AP014821.1\|WP_066116112.1\|688958_689336_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_AP014821.1\|WP_066116089.1\|683230_683542_-\|DUF3593-domain-containing-protein	unknown	unknown	gnl\|CDD\|371929
NZ_AP014821.1\|WP_066116109.1\|688699_688903_+\|DUF751-family-protein	unknown	unknown	gnl\|CDD\|368433
NZ_AP014821.1\|WP_066116114.1\|690779_692630_-\|hypothetical-protein	c2c5_V-U5	-	unknown
NZ_AP014821.1\|WP_158506696.1\|693169_693343_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066116124.1\|697204_698872_-\|Mu-transposase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378147
NZ_AP014821.1\|WP_066116128.1\|701500_703363_+\|biosynthetic-type-acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236014
NZ_AP014821.1\|WP_066116106.1\|688186_688465_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066116120.1\|695885_696368_-\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NZ_AP014821.1\|WP_066116126.1\|699562_700978_+\|GAF-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|376570
NZ_AP014821.1\|WP_066116100.1\|685527_685974_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_AP014821.1\|WP_066116122.1\|696367_697195_-\|TniB-family-NTP-binding-protein	unknown	unknown	gnl\|CDD\|225398

Protein	Function_ID	Function_description	E-value
NZ_AP014821.1\|WP_066116130.1\|703503_704673_+\|ferrochelatase	gnl\|CDD\|223353	COG0276, HemH, Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism].	1.90364e-74
NZ_AP014821.1\|WP_066116105.1\|687434_688124_+\|DUF4230-domain-containing-protein	gnl\|CDD\|379417	pfam14014, DUF4230, Protein of unknown function (DUF4230). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 203 and 228 amino acids in length.	2.10263e-34
NZ_AP014821.1\|WP_066116097.1\|684969_685395_-\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	7.92901e-56
NZ_AP014821.1\|WP_066116116.1\|692693_693113_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	2.12529e-12
NZ_AP014821.1\|WP_066116091.1\|683765_684320_-\|peroxiredoxin	gnl\|CDD\|239315	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth.	2.73434e-63
NZ_AP014821.1\|WP_066116093.1\|684391_684841_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	5.23536e-91
NZ_AP014821.1\|WP_066116103.1\|686194_687136_-\|spermidine-synthase	gnl\|CDD\|178418	PLN02823, PLN02823, spermine synthase.	9.52214e-98
NZ_AP014821.1\|WP_066116112.1\|688958_689336_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	4.6563e-45
NZ_AP014821.1\|WP_066116089.1\|683230_683542_-\|DUF3593-domain-containing-protein	gnl\|CDD\|371929	pfam12159, DUF3593, Protein of unknown function (DUF3593). This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 98 and 228 amino acids in length. There is a conserved LHG sequence motif.	1.61389e-43
NZ_AP014821.1\|WP_066116109.1\|688699_688903_+\|DUF751-family-protein	gnl\|CDD\|368433	pfam05421, DUF751, Protein of unknown function (DUF751). This family contains several plant, cyanobacterial and algal proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis (personal obs:Moxon SJ).	5.21609e-22
NZ_AP014821.1\|WP_066116126.1\|699562_700978_+\|GAF-domain-containing-sensor-histidine-kinase	gnl\|CDD\|376570	pfam01590, GAF, GAF domain. This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.	2.9595e-08
NZ_AP014821.1\|WP_066116131.1\|704783_705608_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.74222e-12
NZ_AP014821.1\|WP_066116124.1\|697204_698872_-\|Mu-transposase-C-terminal-domain-containing-protein	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	6.93808e-17
NZ_AP014821.1\|WP_066116128.1\|701500_703363_+\|biosynthetic-type-acetolactate-synthase-large-subunit	gnl\|CDD\|236014	PRK07418, PRK07418, acetolactate synthase large subunit.	0
NZ_AP014821.1\|WP_066116120.1\|695885_696368_-\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	1.3226e-05
NZ_AP014821.1\|WP_066116100.1\|685527_685974_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	8.16833e-16
NZ_AP014821.1\|WP_066116122.1\|696367_697195_-\|TniB-family-NTP-binding-protein	gnl\|CDD\|225398	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only].	7.57628e-51

>NZ_AP014821.1|WP_066116112.1|688958_689336_+|30S-ribosome-binding-factor-RbfA
MANSRRVEKVSSLIKKEISQMLISGIKDDRVGAGMVSITEVEISGDLQHARVFVSIYGTSEAKKETMEGLKACTPFVRKALGQRISLRHTPEIRFIEDSSLEKGDNLINLINRITPKEDSFFEEE
>NZ_AP014821.1|WP_066116109.1|688699_688903_+|DUF751-family-protein
MDGFWENVLRYPRYMVSLILGIFFFLWEQIKPLFKNPVTATAIFGLMIGAFSFLYFTLKAMLGLAPV
>NZ_AP014821.1|WP_066116106.1|688186_688465_-|hypothetical-protein
MGKISTVISTSTVKSPNLELSASMLENNPSSHKRKVSDQFPKEKSIKVFKRLIIITTVVFSFGGLGFGFALRYSNIFQIHQSNNVPFTNFSD
>NZ_AP014821.1|WP_066116105.1|687434_688124_+|DUF4230-domain-containing-protein
MNTSKPFILNPHLFKIFFFLSGSGFTLVILLGLFGIWKTGTDFIQGITHLFHHEVTLPTTKNPHVILRQVQGVSELTTSIFVMDTIVPTSSNRKIGNWVVGETNLLYVARGEVKAGLDLSNLTAEDIVIQGDNIKIELPPVKILDEKIDLNQSQVYNYDRGFLNLGPDVALDLQLKAQQETLTKIKETACQQKILNQANDKAVILITELMKNSGFATVEVTTTPSNDCK
>NZ_AP014821.1|WP_066116103.1|686194_687136_-|spermidine-synthase
MAGSQLNADVWISEYITPYDIYVHGITSILAHKKTPYQEMYVVESGVYGKALVLDGKWQSCTGDEFLYHEALVHPAMINHPNPENVLILGGGEGATTREVFRWNAVKKAMMVDIDGDVVEACREYLPEMHQGSFDDPRLELVIGDAFNVLDTSEAKWDIIISDLSDPIEEGPSFQLFTQEYFARLKNILRENGIVVIQAGPIAPANLHIHGRLVNTLKAVFPNVHSYFAPTCTYGSSWGFAIASESTFDTRPDPEKIDILLEQKTTGDFRSFDGISLLGMLQTPGYVRQCIEKETEVYTITKPAKFFGKGVSN
>NZ_AP014821.1|WP_066116100.1|685527_685974_-|pentapeptide-repeat-containing-protein
MNKLLATTIAVISTFLVVNSANSENPNHRQQLLETNQCMGCDLKGVDLQGEHLIGADLRNADLRNANLEGVNLEGADLDGANLQGADLSKAFLTNATMNNANLNSVDLTFAVIFDAQVYGATMNNMNIENASIFETNIGVGGEYPDNE
>NZ_AP014821.1|WP_066116097.1|684969_685395_-|YjbQ-family-protein
MKIHQQIIDIKTSGKCLHNITPQIKDVLNNSGIITGLATIFILHTSASLIIQENADPDVLADLSIFFSKLVPENGYDYLHSSEGADDMPSHIRSILTSTSENIIIRQGKLLLGTWQGIYLWEHRTRSHFRQVAIHLQGVDY
>NZ_AP014821.1|WP_066116093.1|684391_684841_-|nucleoside-diphosphate-kinase
MERTFLMVKPDGVQRNLVGEVIKRLENKGFTLVGLKLMSVSRELAEKHYDVHKERPFFNGLVDFIVSSPVVAMVWQGEGVVASARKIIGATDPLAAEPGTIRGDYGVNIGRNLIHGSDAIETAQREIALWFKEDELVSWENAMKPWLFE
>NZ_AP014821.1|WP_066116091.1|683765_684320_-|peroxiredoxin
MKVSKYWAKIPIIISIILSLSFSFINPVLALGGVQPPLNQPAPQFTLPTNVGDGEISLTDYQGKWVVLYFYPKDFTPGCTLEAQRFQKDLSKYHSLNAEIIGVSVDDVNSHQEFCDEEGLKYPLLADTDGKVSKSYGSWLAGFSMRHTYIINPDGVLIAQFLGVRPAIHSQEVLTKLQELQSYS
>NZ_AP014821.1|WP_066116089.1|683230_683542_-|DUF3593-domain-containing-protein
MESITLNFVSKETLFAVSLFPYLGFLWFLTKSQKMPKLALMGFYLLLLFVAITIPAGIYAETHFHTSLANVDWLHGGAEFFLTLSNIFVVLGFRQVVIQKEKE
>NZ_AP014821.1|WP_066116114.1|690779_692630_-|hypothetical-protein
MAHVTIQCRLIASRDTRQFLWQLMAQKNTPLINEILLRIKQHPDFPHWRTKKRLPKDFLARQIAELKNNYPFEEQPSRFYASVNKVIDYIYKSWFEVQKALDWKLQGNLRWVEMLLPDTELIKHFDNSLESLQQQATLILDSIDSTVSHDRISTILFEKCGKTKKPEIKSAIIYLLKNGCTIPKKPETTEKYQDLKRKVEIKITKLHRQIESRIPLGRDLEDKKWLDTLITASTTAPIDQTEANTWFSILKQNQSSIPYPILYETNEDLKWSLNEKNRLSIRFSGLGEHSFQLCCDHRQLPYFQRFYEDQELKKASKDQLSSALFTLRSAMILWKEDEGKGELWDRHKLYLHCTFETRCLTAEGTSTIVEEKQKEVTKIIDLMKAKEELSDSQQAFIRRKNSTLAKLNNTFPRPSKPVYQGKPNVHLGIAMGLEQPVTIAIVDIETDKVITYRNTKQLLREDYRLLRRRRIEKQKLSHQNHKARKRFNFQQKGESNLGEYLDRLIAKAILTVAQEYQVSTILIPRLRDMRSITEAEIQLRAEKKIPEYKEGQKKYAQDYRVQVHQWSYGRLIENVKLICEKVGIVVVEAKQPKQGTLTEKALQLVLSATEKNLKKK
>NZ_AP014821.1|WP_066116116.1|692693_693113_+|MerR-family-transcriptional-regulator
MKERFFSSKQTSLITGCSLRQLQYWRDKEVIVPFIQGTGTGKTIYYSPAELVEISIMVYLLSVGLSFEIGQIILSDLKEKERNFRNPDYKGRFMIIPRDGKMSLLSYEREKAIELLDQGTSIVPLWLDRIHEQLKETLG
>NZ_AP014821.1|WP_158506696.1|693169_693343_-|hypothetical-protein
MICLKEGAAINPFLASSKSRLSSKGKLFRKPFCSLMVNTEGIFPLGANCLPASCQGG
>NZ_AP014821.1|WP_066116120.1|695885_696368_-|TniQ-family-protein
MDLQIQNWLFILVPYEGESISHFLGRFRRANSLSCGGLGQATGLYSAIARWEKFRFNPPPSLKQLEKLSEIVQVEMATLQTMFPSAPMKMTPIRICSACYGENPYHQMSWQYKEIYRCDRHNLNILSECPNCAARFKFPNLWFEGFCHRCFTPFEQMPQS
>NZ_AP014821.1|WP_066116122.1|696367_697195_-|TniB-family-NTP-binding-protein
MEAKAIAQELGNIEIPEEKLQMEIERLNSKTLVSLEQVAKLHEYFEGKRQSKQSCRVVGESRTGKTMACDSYRLRHKPIQKVGHPPQVPVVYIQIPQDCGTKELFQGIIEYLKYQMTKGTIAEIRQRAIKVLQGCGVEMIIIDEADRFKPKTFAEVRDIFDRLNIPIVLVGTDRLDTVIKRDEQVYNRFRSCYRFGKLSGADFQNTVNIWEKQVLKLPVASNLIQTKMLKLIAEATGGYIGLMDTILRESAIRSLKRGLNKITFEILKEVTQEFK
>NZ_AP014821.1|WP_066116124.1|697204_698872_-|Mu-transposase-C-terminal-domain-containing-protein
MTIENQISESQELISQLSPEEQAIADVIEDLVQPCDRKTYGAKLKKAAETLNKSVRTVQRYIKEWEEKGLLAIKKGNRSDQGTYRIEKRLQDFIVKTYREGNKGSKRISPKQVYLRTMAQAKEWSIDPPSHMTVYRILNPIIEEKENKKRVRNPGWRGTKLAVSTRSGNEINVEYSNHAWQCDHTRADILLVDQFGQLLGRPWLTTVVDTYSRCIMGINLGFDAPSSQVVSLALRHAMLLKSYSSDYGLHEEWGTYGKPEYFYTDGGKDFRSNHLQQIGLQLGFTCHLRSRPSEGGVVERPFKTLNTEVFSTLPGYTGGNVQERSEDAEKDASLTLRQLERIIVRYIVDNYNQRMDARMGEQTRFQRWDSGLLSIPDLLSERDLDICLMKQSRRRVQKGGYLQFENLMYQGEYLAGYEGETVILRYDPRDITAILVYRNEGNKEVFLTRAYGLDLETESMSWEDAKASAKKVRESGKNLSNRSILAEVKERHTFSDKKTKKERQRQEQEQVKPYIPSPVLKEVKEQTDKATDTDMSEEPIVEVFDYSQLQDDYGF
>NZ_AP014821.1|WP_066116126.1|699562_700978_+|GAF-domain-containing-sensor-histidine-kinase
MRKPLFCIWNNESIELRENQRNLAIQNLNLISERIIPIFDEATQTVANSLNIPVCCLGFLLGEEYQLKSVYGLSNLGLMNDLAKTRKIERQNTFATHVIDSHNYLVIENTLCDPFFSQNILTQHYGIVSYLGVPLTIFNGLCIGCLEVIDTTARKFTLQDINFLMITARWCVAEYERNELITPHNNFIKYCNNYQNFSSDILIDNVENFTSSPSLISSNNINDSEKYIRQLSFQLLNKLTQKLSIPLTSVIGMSSVLKQEIYGKLNSKQLEYLQIIHDSGQEMVTLVDEITKLANIKTEINLEFVPVDLENLGKQVIKSLETFAVSREHSLRLSIEPGEKIWKLDREKVKKTLYYLLITIIEGSRTGGEIQIHISQKMQTLKINCWVTHPWLGDGISFEKINAYECALKNYDSSLLQNNIDKKTSSQNSYEYDLICLLFSTYLAHLQGGNISLQGSPESGYRFIISMPISK
>NZ_AP014821.1|WP_066116128.1|701500_703363_+|biosynthetic-type-acetolactate-synthase-large-subunit
MVASNIPSFKLSTDVVPIKCSGAFALIDSLCRHGVKHIFGYPGGAILPIYDEVYRAEARGDIQHILVRHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAHMDSIPMVIITGQVSRAAIGSDAFQETDIFGITLPIVKHSYVARNAQDIPRIIAEAFHLASTGRPGPILVDIPKDVGLEECEYIPVYPGEVKLSGYRPTVKGNPRQINGAVELISEAKQPLLYVGGGAILSKAHAQIQELAERFQLPVTTTLMGLGAFDEHHTLSVGMLGMHGTAYANFAVSECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPEVPIVGDVRQVLEQILQRARELDLPAHDTLTKDWLARIDRWKQDYPLIVPHPEDALSPQEVIVEIGRQAPHAYYTTDVGQHQMWAAQFLKTGPNRWISSAGLGTMGFGLPAAMGAKVAVGEEEVICISGDASFQMNLQELATLAQYNIKAKTVIINNRWQGMVRQWQETFYGERYSCSNMEAGMPNFEMLAEAFGVKGMTISSRDELSGAIAEMLAHDGPVLLNVHVKRDENCYPMIAPGKNNAQMLGLPKKAPESLTKEIVICSNCGTRNPVDNSFCPECGTKL
>NZ_AP014821.1|WP_066116130.1|703503_704673_+|ferrochelatase
MVVTPERIIDNNSVVNSNDRVAVLLMGYGEVESYDDFANYNEQALNLLTAKFAPVPTWIYPPIAKLLAMFDLHEWSHQHGNFISPHNAIFERQRSNIEHHLQHTWGDRVRVFKAFNFCAPHLPNQVLEQIQAEGFDKVLIYPLLVVDSIFTSGIAVEQVNQALAKPTNSEEHWIKGMRYLPSFYNEPKYINLLAKMVEREISHRLSSAYLPSEIGIVLMNHGCPHEAKGFTSGIDESQKLYDLVRERLINRFPMISVGWLNHQTPLIKWTQPNAELAGRNLIELGAKALVFMPIGFATENHETLLDVEHIIESLQKKYPTVNYVQMECVNDNDEFCAMAAEWANPQIESLLNDEAMVINPSLATASHSRGHHHDHHHHHHHSQEHHHHH
>NZ_AP014821.1|WP_066116131.1|704783_705608_-|methyltransferase-domain-containing-protein
MGYFDTLIDKFGENPELEEAFGKHIHWGYWENPTKATGSLMDFAIAANNLSKLVIKTAEISDGVTILDAGCGFGGTISLLNESFSNLNLYGVNIDNAQVERAREVIKPQNNNNIQFINANACDLPDFKTLFDYSIALECIFAFPSREIFFQQVRKNLKSSGKLIIVDFIINPQIRKFWAWFEGQILSRLITDTYGSKATNQVEFIGIKDYETIANKTGFKLEKVIDINKNVQPTYPVINKLIIDNFNDLMTAKGLEIFSQLNLISYQILIFTTE

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Crispr_ID: NZ_AP014821_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014821_3

1556062-1556393

TypeV-U5

Consensus_repeat	Method
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	PILER-CR
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	CRISPRCasFinder
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	CRT

4 spacers

c2c5_V-U5

The CRISPR arrays of NZ_AP014821_3

>merge|NZ_AP014821|3|1556062-1556393|PILER-CR,CRISPRCasFinder,CRT
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAGTTAGTTTATAATAAGCACCTGCTTGGGTAACTACTCCGTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAGTAGTTATTTCACCATCGGCACGAATAGGGAATTGATAAGTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAGCTATTGTTACAACGAAAAAAGACTAAAAAAACTACAGAGTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAGGAAAGTTCTTTTACTTCCTTTTATATAATGAGTTCCCCAGTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG

>NZ_AP014821|3|3|1556062-1556393|PILER-CR
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	TTAGTTTATAATAAGCACCTGCTTGGGTAACTACTCC
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	TAGTTATTTCACCATCGGCACGAATAGGGAATTGATAA
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	CTATTGTTACAACGAAAAAAGACTAAAAAAACTACAGA
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	GAAAGTTCTTTTACTTCCTTTTATATAATGAGTTCCCCA
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG

>NZ_AP014821|3|2|1556062-1556393|CRISPRCasFinder
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	TTAGTTTATAATAAGCACCTGCTTGGGTAACTACTCC
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	TAGTTATTTCACCATCGGCACGAATAGGGAATTGATAA
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	CTATTGTTACAACGAAAAAAGACTAAAAAAACTACAGA
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	GAAAGTTCTTTTACTTCCTTTTATATAATGAGTTCCCCA
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG

>NZ_AP014821|3|2|1556062-1556393|CRT
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	TTAGTTTATAATAAGCACCTGCTTGGGTAACTACTCC
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	TAGTTATTTCACCATCGGCACGAATAGGGAATTGATAA
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	CTATTGTTACAACGAAAAAAGACTAAAAAAACTACAGA
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG	GAAAGTTCTTTTACTTCCTTTTATATAATGAGTTCCCCA
GTTGCAGATGAATTTACTTCTCTGTGCGATCGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014821.1\|WP_066117526.1\|1544456_1547072_+\|class-I-SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|369456
NZ_AP014821.1\|WP_066117541.1\|1553336_1553810_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NZ_AP014821.1\|WP_066121789.1\|1562509_1563202_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_AP014821.1\|WP_066117558.1\|1563310_1564804_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_AP014821.1\|WP_066117538.1\|1550967_1553340_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226581
NZ_AP014821.1\|WP_066117548.1\|1557544_1558090_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319806
NZ_AP014821.1\|WP_066117546.1\|1556829_1557462_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|237709
NZ_AP014821.1\|WP_144439415.1\|1560691_1560862_+\|ssl1498-family-light-harvesting-like-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066117529.1\|1547131_1548454_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|176476
NZ_AP014821.1\|WP_158506699.1\|1549798_1549948_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066117535.1\|1550632_1550971_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341149
NZ_AP014821.1\|WP_071828023.1\|1553901_1555725_+\|hypothetical-protein	c2c5_V-U5	-	unknown
NZ_AP014821.1\|WP_066116328.1\|1550060_1550279_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066117561.1\|1565010_1565658_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_AP014821.1\|WP_066117552.1\|1559422_1560487_+\|Fe(3+)-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270260
NZ_AP014821.1\|WP_082712913.1\|1565792_1566632_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|372577
NZ_AP014821.1\|WP_066117550.1\|1558274_1559204_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NZ_AP014821.1\|WP_071828007.1\|1548426_1548603_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369439
NZ_AP014821.1\|WP_082712913.1\|1543390_1544230_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|372577
NZ_AP014821.1\|WP_066117555.1\|1561198_1562266_-\|photosystem-II-q(b)-protein	unknown	unknown	gnl\|CDD\|130221

Protein	Function_ID	Function_description	E-value
NZ_AP014821.1\|WP_066117526.1\|1544456_1547072_+\|class-I-SAM-dependent-DNA-methyltransferase	gnl\|CDD\|369456	pfam07669, Eco57I, Eco57I restriction-modification methylase. homologs of the Escherichia coli Eco57I restriction-modification methylase are found in several phylogenetically diverse bacteria. The structure of TaqI has been solved.	4.8327e-08
NZ_AP014821.1\|WP_066117541.1\|1553336_1553810_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	6.62738e-13
NZ_AP014821.1\|WP_066117558.1\|1563310_1564804_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	8.855e-58
NZ_AP014821.1\|WP_066117538.1\|1550967_1553340_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226581	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	1.64983e-91
NZ_AP014821.1\|WP_066117548.1\|1557544_1558090_+\|HAD-family-hydrolase	gnl\|CDD\|319806	cd07503, HAD_HisB-N, histidinol phosphate phosphatase and related phosphatases. This family includes the N-terminal domain of the Escherichia coli bifunctional enzyme histidinol-phosphate phosphatase/imidazole-glycerol-phosphate dehydratase, HisB. The N-terminal histidinol-phosphate phosphatase domain catalyzes the dephosphorylation of histidinol phosphate, the eight step of L-histidine biosynthesis. This family also includes Escherichia coli GmhB phosphatase which is highly specific for D-glycero-D-manno-heptose-1,7-bisphosphate, it removes the C(7)phosphate and not the C(1)phosphate, and this is the third essential step of lipopolysaccharide heptose biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.76099e-69
NZ_AP014821.1\|WP_066117546.1\|1556829_1557462_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|237709	PRK14419, PRK14419, membrane protein; Provisional.	6.4368e-75
NZ_AP014821.1\|WP_066117529.1\|1547131_1548454_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|176476	cd08639, DNA_pol_A_Aquificae_like, Phylum Aquificae Pol A is different from Escherichia coli Pol A by three signature sequences. Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuclease. Pol I uses its 5' nuclease activity to remove the ribonucleotide portion of newly synthesized Okazaki fragments and DNA polymerase activity to fill in the resulting gap. A combination of phylogenomic and signature sequence-based (or phonetic) approaches is used to understand the evolutionary relationships among bacteria. DNA polymerase I is one of the conserved proteins that is used for phylogenetic anaylsis of bacteria. Species of the phylum Aquificae grow in extreme thermophilic environments. The Aquificae are non-spore-forming, Gram-negative rods and strictly thermophilic. Phylum Aquificae Pol A is different from E. coli Pol I by three signature sequences consisting of a 2 amino acids (aa) insert, a 5-6 aa insert and a 6 aa deletion. These signature sequences may provide a molecular marker for the family Aquificaceae and related species.	9.27579e-68
NZ_AP014821.1\|WP_066117535.1\|1550632_1550971_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341149	cd17260, RMtype1_S_EcoEI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.EcoEI TRD1-CR1, S.EcoJA17PI TRD1-CR1, S.EcoJA23PI TRD1-CR1, and S.StyLTIII TRD1-CR1. Escherichia coli A58 S subunit (S.EcoEI) recognizes 5'... GAGNNNNNNNATGC ... 3', Escherichia coli UCD_JA17_pb S subunit (S.EcoJA17PI) and Escherichia coli UCD_JA23_pb S subunit (S.EcoJA23PI) recognize 5'... GAGNNNNNNNGTCA ... 3', and Salmonella typhimurium LT7 S subunit (S.StyLTIII) recognizes 5'... GAGNNNNNNRTAYG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example: S.EcoEI TRD1 and S.StyLTIII TRD1 recognize GAG/CTC, S.EcoEI TRD2 recognizes GCAT/ATGC, and S.StyLTIII TRD2 recognizes CRTAY/RTAYG. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It also includes TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases, such as Pseudomonas putida Jo 4-731 Type IIG restriction enzyme/N6-adenine DNA methyltransferas RM.PpiI and Porphyromonas macacae COT-192 OH2631 RM.Pma2631ORF8845P, as well as type I DNA methyltransferases such as Chlorobium limicola M.Cli245ORF128P. RM.PpiI recognizes the sequence 5' ... GAACNNNNNCTC ... 3'.	3.82414e-41
NZ_AP014821.1\|WP_066121789.1\|1562509_1563202_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	3.10499e-22
NZ_AP014821.1\|WP_066117561.1\|1565010_1565658_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.4206e-19
NZ_AP014821.1\|WP_066117552.1\|1559422_1560487_+\|Fe(3+)-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270260	cd13542, PBP2_FutA1_ilke, Substrate binding domain of ferric iron-binding protein, a member of the type 2 periplasmic binding fold superfamily. FutA1 is the periplasmic component of an ABC-type iron transporter and serves as the primary receptor in Synerchosystis species. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria and is critical for survival of these pathogens within the host. After binding iron with high affinity, FutA1 interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.12431e-150
NZ_AP014821.1\|WP_082712913.1\|1565792_1566632_+\|IS5-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.41955e-24
NZ_AP014821.1\|WP_066117550.1\|1558274_1559204_+\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.74189e-12
NZ_AP014821.1\|WP_071828007.1\|1548426_1548603_-\|hypothetical-protein	gnl\|CDD\|369439	pfam07592, DDE_Tnp_ISAZ013, Rhodopirellula transposase DDE domain. These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces.	4.70069e-15
NZ_AP014821.1\|WP_082712913.1\|1543390_1544230_+\|IS5-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.41955e-24
NZ_AP014821.1\|WP_066117555.1\|1561198_1562266_-\|photosystem-II-q(b)-protein	gnl\|CDD\|130221	TIGR01151, Photosystem_QB_protein, photosystem II, DI subunit (also called Q(B)). This model describes the Photosystem II, DI subunit (also called Q(B)) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits DI, DII, Cyt.b, Cyt.f and iron-sulphur protein. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis and principal electron donor is H2O. Although no structural data is presently available, a huge body of literature exits that describes function using a variety of biochemical and biophysical techniques. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis].	0

>NZ_AP014821.1|WP_071828023.1|1553901_1555725_+|hypothetical-protein
MTIKTICCQLIAPEQTRQRLWQYMAEQYTPLMTELIRQVGEHPDLSQWQDKGKMPSNIVKDLCATLKQIRPFTGLPSNFYQSAINQVNYIFASWLASQHKLKLRLNGKRYYFSMLYSDQDLVKNSGHTLTEIRSQAQIILNQISNKKTEEKHKYLFQHHRESSNILGKTAITYLIKHNQKIPTEPEHRDKFEKLYRKTQIQIEKLEKQIEARLPKGRNLSEQQWLNTLITASQNVPKDENEAKLWQKYILTDSNSLPYPVSYETNENLVWSLDEQGRLNLRFNGLGKLTFKVYCDNRQLHYFQQFLQDQTIKKSGKNKHSSGLFLLRSAMLVWKPNESKGKSWNKNTLHLHCAIDTRLLTLEGTQEVREEKLTQVTNIIQSMEKKPSLNDNQKQCLKRKKTSQKNLHESFLRPSRAKYQGNPNIIVGVALGLKHPVTVSIVDMATQKVIAYRSTKQLLGKNYKLLNRYKVQKQRQAHQRHVNQRQSSSVSFGDSNQGKYLNDLLVGAVMDLATQYQAGNIVLPKLDHIREIVESEIKVKAEKKIPLSVDLQKKYAKTYRMSVHQWGYGLFIDGLQNQAKRLSISIEERKQPIRGSPQEQSRDLVLGK
>NZ_AP014821.1|WP_066117541.1|1553336_1553810_-|MerR-family-transcriptional-regulator
MDKQFFTSKEAATIAGLTYRQVEYWRKKDIIVPTVNTEGSGHNVYYSLCELWQLALMGYLLDMGLDFQICCQILNEFKERHEEFMKDPLDFSPLKYTLCPDPEKGFTLKHLSPIEITQALSRGESVLLLWTENVNQRLIEGLSLVLTPKKKPLLTRK
>NZ_AP014821.1|WP_066117538.1|1550967_1553340_-|DEAD/DEAH-box-helicase-family-protein
MNEAETRAKLIDPSLHRRGWTENHIRREETAGSIVIIDDRPRKLGKGRVDYILRLRLSDTTQPLAVAIIEAKAEYAPPNQGLEQVKRYGKLSNVPFVYSSNGHLFVEYDAFTGKTSKPKPLSQFPTPQDLQARYEQHKGFKLNAEIAKPLLTPYRGGEASRRYYQDAAIRAVFEKIASCHESNEALRALLSLATGAGKTYIATQILCRIADAGQLRRALFICDRTELRDQASAALKGIFGDDVAVVSGKNPQKNARILVATYQTLDVDTDEGTGNFLVNHYPENYFSHIIIDECHRSAWGKWSLVLTRNPDAVQIGLTATPRKLETTEDTPEVREDLQITADNVRYFGEPVYEYDIGQGIEDGYLAVCSIHPRNINLDYTGITIEEILARNPVDSITGQPVTEEEIRERYECTSYERRIELPDRVLVMCQDLFSALVQRGKPEQKTVIFCVSDKHADEVAITMNNIYVDWCGQNNRQLLSDYAFKCTAKNSGNDYLPDLKESSRSHFIATTVDLLTTGVDVPPLENIVFFRYMRSPLTFYQMIGRGTRLHPPSGKLMFRVYDYTNATRLFGEEFLTRLSPRKDDKTSDRVKEKGGSYNVESQKIITVEGFDVRITAGQKSILTMVNGETIPVSVEEYRERLGKRLIEEVSNIALFREIWIKPNSRNQLMSILPDGGRSPLVLRAVSELEDYDLFDILGELGYGIQLRTRKQRAEAFEYKQEKWLEMMPEATVATIKAITAQFAQNGTEELENPKLFQLPMVKKAGGIGALKEFGDPKEILLETKMRLFAA
>NZ_AP014821.1|WP_066117535.1|1550632_1550971_-|restriction-endonuclease-subunit-S
MSKDNKKLPDGWQWVKLVDVCEINPRRPSDIKREDKTPTTFVPMSAVDEKRGIIADAEVKPYIEVKRGYTYFEEGDVLFAKITPCMENGKNAIATNLIDGFGLGTTEFHVIR
>NZ_AP014821.1|WP_066116328.1|1550060_1550279_-|hypothetical-protein
MIPEQQAQLNLHIRAIANILYQQSDVNQLHNLATIEETIREQTLKYITPQIGFFLSKTSQTPNREEPETSEV
>NZ_AP014821.1|WP_158506699.1|1549798_1549948_-|hypothetical-protein
MENLNKMGGSRKRLKEAENLLWCGKIDETITLMSQVKKKKAENFCNYSH
>NZ_AP014821.1|WP_071828007.1|1548426_1548603_-|hypothetical-protein
MLAWAKTMTWKGLRPIVNFSEKVYEKGISLTKKEMKNIEMHLERNPDLPKWDILIRSS
>NZ_AP014821.1|WP_066117529.1|1547131_1548454_-|restriction-endonuclease-subunit-S
MGYSYPIFLAGNFFLRNHLRPTQLIDAKYVHNFIRQPKIYQLASEHFTGSVGQKRVPKEFLINLPIPLPPIDEQKRIASILNEQMSAVEKARKATEAQLESALALPSAYLRSYFHSEEAKSWKQVKLGDVCQEDKQIIDSNTYQLLSLTYIGLEHIESQTGRILKQPSESIKNEGISSTYVFNSSHVLYSKLRPYLNKVAIPNFEGRCTTELIPFLPKDGVDRTFLGWIFRRQETVERAMLGKTGSRMPRASILNKPLTEVTKEDRQIAKSANFGLIYGASVNGFRGYAESNYGISLSEKEAKTIMDNFFKSYSGLANWHKKTKSRIYNGGINETRTLSDRIRYFDNASPQQILNTPIQGTGADMVKLALGKLVSALKPFNGKARILATVHDEIILEAHESISSQVASVLSETMVNSGKEFLNRVPIEAEASIGDNWSDK
>NZ_AP014821.1|WP_066117526.1|1544456_1547072_+|class-I-SAM-dependent-DNA-methyltransferase
MGILAKRNEERNPDIKAKFNDIPYLNSSLFEITELENQTLFIANLNNDYQLPLFTKTVLKDNQGRRKTGELNTLTYLFDFLSAYNFSSEGKEEIQAERKNLINASVLGLIFEKINGYQDGSYFTPGFITMYMCRETITRAVIEKFNQEKNWNGTNIENLQELIEYQDQEVRKEANNIINSIKICDPAVGSGHFLVSGLNEIIALKSKLNILQDREGKRIKEYTIEVENDELVIKDEDGDLYSYKPNYAPSQRIQETLFYEKKTIIENCLFGVDINLNSVNICRLRLWIELLKNAYYHRDTKELETLPNIDINIKCGNSLISRFDLNSDLSLALKKINLTIADYQQAIKTYHNPQNRQEKEEIVKLIKQIKDNFNTLMTGNTPLEKKLREKESQLYQLQNQTSLLPESDDDKKARETTEKSLNNEINQLKKEIEDETNNVIYRNAFEWRFEFPEVLNEKGDFIGFDLIIGNPPYISANSGEEILKLRQKILQSNRYKTLWEKWDLYVAFIEESFQLIKNRGLCSLIIPYPYLNQNYAKLSREFIIKENTLLEIVNLHSIKVFETATVNNCIVFGKKEYKGDYKIKVSLPEDYKINKTFYVDKYNILTTNSVIELETRKTFNFSQKQFKNLGDVCFISVGMVLNADEKRVKGAFKKKDLISDTQSGIHQKQYIEAKNIDSYQINLIRFLEWNTNRVPNLIRRPTFPELYQNEKILINKIGKIKATYDNNNLFCDQTIRIAVLWCNLIGVQNKSIDNNVKKFSNYSRQQLEQFSTQINIKFILGILNSKLGNYLLDNIRGVGNIDLNPDYLKNIPIPYVPLEQQKTIINLVDEILEIKKKKPQTKTNNKEEIDELVYKLYGLTKEEIKIIEGHQ
>NZ_AP014821.1|WP_082712913.1|1543390_1544230_+|IS5-family-transposase
MKLERIKKLKPEKFKRRFGVKKETYNLLVEIVKKEQNNHKRGRKSKLTVSEQILVTLEYLREYRTYFHISEYWNISESTVCRTVHKIEKILLKSGYFSLGGKKELIKKENEIKAVLIDVTEIAIERPKKRQKIYYSGKKKEHTFKAQLVVNKDTLEIICYVNGRGREHDFKIFKNSRLPLSEKIKCLVDKGYQGIEKIHKLSEIPKKKTKKRKLTQEEKRKNRELNRQRIVIEHVNRKLKIFRILSEKYRNKRKRFGLRFNLIAGIYNYEIVKKDIAII
>NZ_AP014821.1|WP_066117546.1|1556829_1557462_-|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MTTYLLISVSLVLVAYILGSIPTGYIIARALKGIDIREFGSGSTGATNVLRNVGKGAAIAVLLIDMIKGVLAVYLVKLTYIYFDILPIQWQGWLIAIASLIAVIGHSKSIWLNFSGGKSAAISLGILLAMNPVVGFGTFTIFLTILGICKIVSLSSISAAIAVNILMVIFNPTIPYISFTIIAGIYVIVRHRTNIDRIIAGTEPRIGQTG
>NZ_AP014821.1|WP_066117548.1|1557544_1558090_+|HAD-family-hydrolase
MKALFLDRDGVVIKYIPYLSQAEQVHISQGAKEALKTWQTQGYKLVIVTNQSGISRGYFNYDDVIAIHQKILDEYGQFGVKFEDILLCPHQPADNCPCRKPSPYLLLNYSQKHNIDLSRSYFIGDAPSDIECAINANCQPVLVLTGRGEETKSKLSKYPISIPIFNSLCETVELAIMGNEE
>NZ_AP014821.1|WP_066117550.1|1558274_1559204_+|serine-hydrolase
MVFFSTNETLTTQAENILNATWQKFPTLAKNQIALTWIVYDEPVIVNTGGALSPEEFWQYPLQGFSYRGVETIYPASVVKLFYLVAIYEWLQGRMVTESSELNRGIKDMIVDSSNDATSFVVDVLSGTTSGAELSIGPFETWKYQRNIVNRYYQSLGWEELSTINVNQKTWSDGPYGRERMFVGEIYDNRNMLTTNAVARLFHSIIGGVAVSSMASQKMMDLLKRDVDRKTLGENEEENQINGFLGESLPHNSNLWSKAGWTSTVRHDCAYIEIQDKKPYILIVFTEGKENSKNRNIIPFISRQFSEIV
>NZ_AP014821.1|WP_066117552.1|1559422_1560487_+|Fe(3+)-ABC-transporter-substrate-binding-protein
MNKVSRRLFLGAGGALGAVALAEFTGVKTSFAQRGQQINLYSSRHYNTDNRLYTDFQKQTGIKVNLIEGKGEELLERIKSEGRNSPADIFLTADVGNIWQAQQAGIFSPVNSSTLNQRIPANLRDTSKNQWFGFSTRVRVIMYRKGKVNPSQLSTYQDLANPKWRGKLIMRTSTNIYNQSLTAWLLGIDGQAKTEQWAKGIVANFARKPQGGDRDQFEAVAAGIADLTVANTYYLAGYANSTDAKKKEIFSKIGVFFPNQGKGQSGAFSNISGGGVLKNAPNRAGAIKFLEYLTSPSAQNYFAKGNFEYPVVKGAQIDPVLKNFGTFRSSSSSLTGVGPNLANAVKILDRAGWK
>NZ_AP014821.1|WP_144439415.1|1560691_1560862_+|ssl1498-family-light-harvesting-like-protein
MYTTINEEGTLNNYAREPQMYYSNYPSPEQQRNYLKWGTLALLLLTSLLLTTLAVS
>NZ_AP014821.1|WP_066117555.1|1561198_1562266_-|photosystem-II-q(b)-protein
MTTTLQQQQSSTWEQFCQWITSTNNRLYVGWFGTLMIPTLLTATTCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLIGIFCYMGRQWELSFRLGMRPWICVAYSAPVSAASAVFLIYPIGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGAWPVIGIWFTAMGVSTMAFNLNGFNFNQSILDSQGHVIGTWADVLNRANIGIEVMHERNAHNFPLDLASAEPVSAPVING
>NZ_AP014821.1|WP_066121789.1|1562509_1563202_-|Crp/Fnr-family-transcriptional-regulator
MLENQILASISQDEYKILFFNLENVSLTSGQVIYKLHQEIEYVYFPLHSMISLVSILSDKSTTEIGLIGNEGFVGLPVFLGGNHATSDTIVQIPDSAMKLDAKIFLTESHRSGELQRILLLYTQARLTQISQNAVCKCHHSIDKQFACWLLFAHDSVNQDELPLTQQFIAQMLGVRRSSVTEVAQKFQKAGIIRYTRGHITILERIILESTACECYKFVKSEFHRLLNFT
>NZ_AP014821.1|WP_066117558.1|1563310_1564804_-|diguanylate-cyclase
MSYQVFNSTLSIVKTEVDQFLKDYTIDHPYRQALSFPYFRQKLIAKVLNNIPNNHILIDECHSFVDDISFCIGLLEEKLLITAKINEQISHIVEEYNQFNLTHNPDYHPKENALAKTAQLSWWIRIDTIKPDMTYYFGSFDNLWEAKENCSGYIEDLIEEKAEGITFDFQYINPPSLTIDNDIEDLRLENQQIWENLWDIEVKKKYYENLFLFSPDSCLILDKDGIIRVINDSAVNLFKTPREKLINKSLNWFISPHSLAKFLDFLQSFNNEINPDKTQSFFSLKFSLPDESFIIVSIKASNIKNLENDIIGWHLSLHDVTKLQQTQNELFHQSRYDSLTDLPNRRSLLEFLQKILNQEEKNHSSRFAVLFLDIDKFKDINDTFGHLIGDKVLITLAKRLITCVRNIDHVARLSGDEFMIVLSHINSSQEAKDCAYRIQKSLSTCFHVSEKKIMINVSIGIVIGDSKTSNLSNLLSNADMAMYQAKSNGELFSIYPY
>NZ_AP014821.1|WP_066117561.1|1565010_1565658_-|Crp/Fnr-family-transcriptional-regulator
MAPHLQEVTLTSGTILHEAYEPIQVVYFPLTAMISLVSIMENGSTTEIGLIGNEGMIGLPVFLGGEFTISRAIVQMSGKSLKMKSSILVREFKEGGALQKILLLHTQARLTQIAQSAACNRQHKIEARLARWLLSVYDCVLTNELELTQEFISNMLGVRRAGVTIAANTLQNRGIIRYNRGRIVILDHKQLEETSCECYRVVQDEFMRLLGSRRG
>NZ_AP014821.1|WP_082712913.1|1565792_1566632_+|IS5-family-transposase
MKLERIKKLKPEKFKRRFGVKKETYNLLVEIVKKEQNNHKRGRKSKLTVSEQILVTLEYLREYRTYFHISEYWNISESTVCRTVHKIEKILLKSGYFSLGGKKELIKKENEIKAVLIDVTEIAIERPKKRQKIYYSGKKKEHTFKAQLVVNKDTLEIICYVNGRGREHDFKIFKNSRLPLSEKIKCLVDKGYQGIEKIHKLSEIPKKKTKKRKLTQEEKRKNRELNRQRIVIEHVNRKLKIFRILSEKYRNKRKRFGLRFNLIAGIYNYEIVKKDIAII

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Crispr_ID: NZ_AP014821_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014821_4

1671225-1671329

Orphan

Consensus_repeat	Method
CATCGATCGCAAAGTCGCATTGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014821_4

>merge|NZ_AP014821|4|1671225-1671329|CRISPRCasFinder
CATCGATCGCAAAGTCGCATTGCTCGATCGTAAATCAACGGTTCATCGCTAAAAGTTCCCACTGTGGTAGAATAATTCCAGCATCGATCACAAAGTCGCATTGCT

>NZ_AP014821|4|3|1671225-1671329|CRISPRCasFinder
CATCGATCGCAAAGTCGCATTGCT	CGATCGTAAATCAACGGTTCATCGCTAAAAGTTCCCACTGTGGTAGAATAATTCCAG
CATCGATCACAAAGTCGCATTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014821.1\|WP_066117802.1\|1665278_1666415_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_AP014821.1\|WP_066117840.1\|1679683_1679923_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_144439418.1\|1676699_1676879_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236991
NZ_AP014821.1\|WP_173645705.1\|1666533_1666692_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066117797.1\|1663743_1664436_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293813
NZ_AP014821.1\|WP_066117799.1\|1664612_1664723_+\|cytochrome-B6	unknown	unknown	gnl\|CDD\|285308
NZ_AP014821.1\|WP_066117833.1\|1673625_1676607_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|215452
NZ_AP014821.1\|WP_173645743.1\|1671519_1671738_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066117827.1\|1672990_1673221_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066117830.1\|1673265_1673559_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066117816.1\|1669849_1670533_+\|GUN4-domain-containing-protein	unknown	unknown	gnl\|CDD\|368432
NZ_AP014821.1\|WP_066117838.1\|1679247_1679559_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066117818.1\|1670585_1671062_+\|CRR6-family-NdhI-maturation-factor	unknown	unknown	gnl\|CDD\|370152
NZ_AP014821.1\|WP_066117810.1\|1667933_1668701_+\|TIGR00297-family-protein	unknown	unknown	gnl\|CDD\|376674
NZ_AP014821.1\|WP_066117834.1\|1677048_1678392_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_AP014821.1\|WP_066121800.1\|1671945_1672971_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371831
NZ_AP014821.1\|WP_066117809.1\|1667086_1667632_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179157
NZ_AP014821.1\|WP_066117794.1\|1662113_1663610_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100081
NZ_AP014821.1\|WP_066117812.1\|1668713_1669397_+\|type-1-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|153235
NZ_AP014821.1\|WP_066117836.1\|1678517_1679213_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816

Protein	Function_ID	Function_description	E-value
NZ_AP014821.1\|WP_066117802.1\|1665278_1666415_+\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	1.9456e-163
NZ_AP014821.1\|WP_144439418.1\|1676699_1676879_-\|hypothetical-protein	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0.000111065
NZ_AP014821.1\|WP_066117797.1\|1663743_1664436_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293813	cd07727, YmaE-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YmaE and Nostoc all1228 proteins.Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. .	7.54357e-24
NZ_AP014821.1\|WP_066117799.1\|1664612_1664723_+\|cytochrome-B6	gnl\|CDD\|285308	pfam08041, PetM, PetM family of cytochrome b6f complex subunit 7. This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta hemes and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidized plastocyanin.	5.05103e-06
NZ_AP014821.1\|WP_066117833.1\|1673625_1676607_-\|isoleucine--tRNA-ligase	gnl\|CDD\|215452	PLN02843, PLN02843, isoleucyl-tRNA synthetase.	0
NZ_AP014821.1\|WP_066117816.1\|1669849_1670533_+\|GUN4-domain-containing-protein	gnl\|CDD\|368432	pfam05419, GUN4, GUN4-like. In Arabidopsis, GUN4 is required for the functioning of the plastid mediated repression of nuclear transcription that is involved in controlling the levels of magnesium- protoporphyrin IX. GUN4 binds the product and substrate of Mg-chelatase, an enzyme that produces Mg-Proto, and activates Mg-chelatase. GUN4 is thought to participates in plastid-to-nucleus signaling by regulating magnesium-protoporphyrin IX synthesis or trafficking.	3.50484e-82
NZ_AP014821.1\|WP_066117818.1\|1670585_1671062_+\|CRR6-family-NdhI-maturation-factor	gnl\|CDD\|370152	pfam08847, Crr6, Chlororespiratory reduction 6. Chlororespiratory reduction 6 (Crr6) is a factor required for the assembly or stabilisation of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis.	1.01707e-95
NZ_AP014821.1\|WP_066117810.1\|1667933_1668701_+\|TIGR00297-family-protein	gnl\|CDD\|376674	pfam01940, DUF92, Integral membrane protein DUF92. Members of this family have several predicted transmembrane helices. The function of these prokaryotic proteins is unknown.	2.59088e-74
NZ_AP014821.1\|WP_066117834.1\|1677048_1678392_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.72003e-51
NZ_AP014821.1\|WP_066117809.1\|1667086_1667632_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179157	PRK00889, PRK00889, adenylylsulfate kinase; Provisional.	6.16513e-123
NZ_AP014821.1\|WP_066121800.1\|1671945_1672971_-\|hypothetical-protein	gnl\|CDD\|371831	pfam11981, DUF3482, Domain of unknown function (DUF3482). This presumed domain is functionally uncharacterized. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with pfam01926. The central region of these proteins contains a hydrophobic region that is similar to pfam05433.	1.93825e-06
NZ_AP014821.1\|WP_066117794.1\|1662113_1663610_-\|site-2-protease-family-protein	gnl\|CDD\|100081	cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.	3.02928e-58
NZ_AP014821.1\|WP_066117812.1\|1668713_1669397_+\|type-1-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|153235	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.	3.32231e-108
NZ_AP014821.1\|WP_066117836.1\|1678517_1679213_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.78453e-71

>NZ_AP014821.1|WP_066117818.1|1670585_1671062_+|CRR6-family-NdhI-maturation-factor
MSINIFINQSQISTLDLSPVKMIIEDLEKRQEILSLEQQLIFNLDYPREENDPREISEIPEVRLWFIALDSCYPWLPFCLNWREGELARYTAMLVPHQFNRSEGIQYNQEALDIFVMQKTFILHSWLTQNNITGNSRLKAMAQIFGYDLDDSFFSLLN
>NZ_AP014821.1|WP_066117816.1|1669849_1670533_+|GUN4-domain-containing-protein
MNDLLILKDKLNQIPDKNKIPLIGELIDQGEDGYQILRDFLFNNKDQVNPITGKIYQVLKNNNTEENKKFLNLYFSKGIVTLLSEKNIDYSELQRLLIEQKYQEADILTREKLCELAGETAIKRKWVYFTEVEKFPVTDLTTIDLLWQVYSEGKFGYKIQRQMWLSLGKDYNQLWTQLKWKSGNKWTKYPQEFIWDLSAPNGHLPLSNQLRGVRVINALFSHPVWNN
>NZ_AP014821.1|WP_066117812.1|1668713_1669397_+|type-1-glutamine-amidotransferase-domain-containing-protein
MKKVLVVLTSVSKYPNLNRATGLWLGEAVHFVKKMESAGYEIDYVSPLGGYISIDPHSLALAEAIDWEWYQKKEFMNRLGNTFTPDQVNPDDYIAIYYTGGHGVIWDFPDNQALQLISRQIYEQGGYISSVCHGAVGLLNITLSDGQLLIKDKKITGFSNEEEKQVELDHIVPFLTETELIARGAIYEKASEPWAVFAIEDKRIITGQNPASGGKVADLLITLLQQK
>NZ_AP014821.1|WP_066117810.1|1667933_1668701_+|TIGR00297-family-protein
MVNLNFDSSNSWIIAIIINSILIIIALISPKKLLTVMGYLNAWVLGVIVWGSLQWQGYIIVMFYFLVGSGITKVGIKQKEAEGIAEKRSGQRGPENVWGSALIATICSLGYVFLSPPWQSFCLIGYVASFATKLSDTCASEIGKAYGKRTFLITNFKPVPRGTEGAVSLEGTLAGMMASIAIAVLAWQINMIDFVGVIICLISAFIATNLESVIGATLQTKFNWLTNEIVNILNTLIGASIAVLFSYIYLFNFIL
>NZ_AP014821.1|WP_066117809.1|1667086_1667632_+|adenylyl-sulfate-kinase
MEQKGVTIWFTGLSGAGKTTISQQVEKQLREQGYKVEVLDGDIVRTNLTKGLGFSKEDRDENIRRIGFVSHLLTRNGVMVIVSAISPYRDIRDEVRGKIGNFVEVFVNAPLAVCEDRDVKGLYKKARSGEIKLFTGISDPYEVPLNPEIECRTDLEELDESVNKVLQGLGKLGYLPQPATV
>NZ_AP014821.1|WP_173645705.1|1666533_1666692_+|hypothetical-protein
MTFFVETDKNNSIKNSESSQEMTDNPILCNHCKRTATNGIKCKGICVADSDY
>NZ_AP014821.1|WP_066117802.1|1665278_1666415_+|cysteine-desulfurase
MSIYLDSSATTAPRPEVIELVTKILTEDWGNPSSLHGWGERAAVILEKARWQISDLLNASSPDNIIFTSGGTEADNLAIFGITSNYNDPQHIIISSVEHSAIERPVYFLEKKGWQVTRLPVNREGKVNPEDLKNALQTNTVLVSIIYGQSEVGTIQPIKKLVEITKNYSKALFHSDAVQMVGRLPVDVEDLEVDLLSLSGHKFYSIQGAGALYLRKGISLNPLFHGGGQENSLRSGTQALPSIVSLGLAASLAQKEIESEALRLTELRDYFIDLILSQCPYLMLTGDKYSRLPHHASFIINHPSPDITGRKIVRYLSSQGVAISAGSACNSGKSLPSPILLAMGYSETEALKGIRFSFDRHTTKEDLKLAILYLSQNL
>NZ_AP014821.1|WP_066117799.1|1664612_1664723_+|cytochrome-B6
MTAESMLFNGAIICFSVVLIGLAWGFLLLKLTGEAK
>NZ_AP014821.1|WP_066117797.1|1663743_1664436_+|MBL-fold-metallo-hydrolase
MNLNINFTEKKPPETNQRSNIYKSPKLILDNIFAFSPNRDTLGGTSYLLIHPKGNILIDCPSWHEVNRDFCLENGGVKYLFFTHRDGISKYVRSIQNDLHCDLLIQEQEGYLLPNLNPITFSQNYLIYDDCELIWTSGYSPGSSCLYYGGYGGVLFSGRHLLPTKEGITALKLKKTFHWRRQLRSVNLLLDRFSENTLNYICPGANTGYLRGKGFIDRAYSSLKISVELH
>NZ_AP014821.1|WP_066117794.1|1662113_1663610_-|site-2-protease-family-protein
MELIILFLFLSTLSYIVIKRNIAKITKTPTWLLWLALMIPPLIWVGWYLTNPKNSMPSILVFLPLILSPILYIWLIEIGKISPKSADLESSSQTPELQKTENPPSDSSKNNTPIPPINSQEEKALRDCFPWGVYYLQKIDYLPQAILCLGKLMTAPEKAYPTIKNNLEKVFDDRFLIIFQETLQGQPFFALVPNPHSTTAKTQLPQEKLTRPGIALTLLILTLFTTTIIGAEIAGVEVTDLETDPSLILQGLPYSLCLIAILGIHELSHYLFAVYYRIKTTLPYFIPIPFFLGTFGAFISIKSPMPNRKAVFDVAIAGPLGGFLVTIPVLIWGLGYSHVVAMPDQINMLNFEALDPRFSFLLAVLSKLVMGSQLVANKAISLHPAAVAGYIGLIITALNLMPVGQLDGGHIVHAMFGQGKALIIGQITRVLVIMLALVRGEFLLWAIILIFMPVTDQPALNDVTELDNGRDFLGLFALILLILILLPLPSTVAQWLNL
>NZ_AP014821.1|WP_173645743.1|1671519_1671738_-|hypothetical-protein
MKYLELSFDERSNNFKRLFDTVDSAISSHDNQVLALTLHSIIELAKSSPFKDLVNLSNVQLALKDSDHIWEL
>NZ_AP014821.1|WP_066121800.1|1671945_1672971_-|hypothetical-protein
MIFIIPIIIGALALVTGGVGVAAGADGLSKMDDAKRIGENAKKKYENKKQKTEIIIEETNNLAKEYGETQIEIHLRTVKRFIDFIERIGQNASLSDLKFLEGFDGFSPETLQEYKLEVLKAEKIATGGATAIGAGYATGQGAIALAGLFGTASTGTAIGGLSGAAAWNATLAWLGGGSLASGGGGMALGSVMLGGIAVAPALMVTGFILGGQGEKTLTNAIEYQAKVNVEVERLDSLDNFLAQVQTRIKELENLVNNLNQLAIENLSKLESTIFVSDGFLTRSENINLEKVNFIPERDAPQFQKVYFLIKALVEILKTPVLDSQGNLNEATFNIKEKYCNL
>NZ_AP014821.1|WP_066117827.1|1672990_1673221_-|hypothetical-protein
MLNNNWQFVELWIDTIIFPPRILMLIGDNEGKYQVYDPAQQYKSIFSSNNYEDINSWLLEDEYQKVDGKIVANEFM
>NZ_AP014821.1|WP_066117830.1|1673265_1673559_-|hypothetical-protein
MVKDSRESLFAKHINGTPQVKRLLKKEGKAHVFNDLEIMERVIKAIIEKGEQTGIEDQNDYYERYGLYFSQLIGYQIRNDDTKILLYYAEIKIIKNY
>NZ_AP014821.1|WP_066117833.1|1673625_1676607_-|isoleucine--tRNA-ligase
MTEQKSYKDTVNLPQTSFDMRANAIKKEPELQEFWVKEQVYEKLGQNNPKDLFILHDGPPYANGSLHMGHALNKVLKDIINKYKLLQGHKVRYVPGWDCHGLPIELKVLQSLSSKEREALTPITLRHKARDFALKAQQEQAEGFKRYGIWGDWENPYLTLLPEYEAAQIEVFGKMALNGYIYRGLKPVHWSPSSQTALAEAELEYPEGHTSRSIYTSFKVTKLGEKAQSLAEFMPNLEVAIWTTTPWTIPGNLAVAVNGNLDYAVVEVIFPNLPAQGGSECVIPADFEGKFEIPPSEKETYCPPRFLIVAKDLVESLNNTLNFLLVLKTVIKGADLELSIYKHPLFDRESPIVIGGDYITTESGTGLVHTAPGHGLEDYITGQKYNLPILSPVDDKGNFTEEAGEFQGLNVLKDANQAIIEALTAKGSLWKEEAYAHKYPYDWRTKKPTIFRATEQWFASVDGFRDLALKAIKEVKWIPAQGENRITPMVGDRSDWCISRQRSWGLPIPVFYDEETNEPLLNEETINHVRDIIREKGSDAWWELSVEELLPESYRNNGKTYRKGMDTMDVWFDSGSSWAAVANQREELKYPVDLYLEGSDQHRGWFQSSLLTSVAVNGIAPYKTVLTHGFVLDEKGTKMSKSLGNVVDPNLIINGGKNQKQQPPYGADVLRLWVSSTDYSGDVRIGDNIIKQLADVYRKIRNTARFLLGNLHDFNPAKDAVSYENLPELDKYILHETHLVFSEITEAFENYQFFKFFQKVQNFCVVDLSNFYLDIAKDRLYISDPNSPRRRSCQTVMAIILENLAKAIAPVLCHMAEDIWQNLPYKNPYNSVFEAGWVKLEPQWVKNPDLLSKWGQLRNIRTGVNKVLDDARNQKLIGSSLEAKVLIYDVEVKLTETITNLNPSIALNDGNRVDELRYLLLVSQVELVSEESALNDGQYQGEIQLNDTTLKVAVLNAEGHKCDRCWNYSTTVGTFSNEPLICDRCKEALTGNF
>NZ_AP014821.1|WP_144439418.1|1676699_1676879_-|hypothetical-protein
MTLSSHNSSYAHETHENHRNNSTTISVWNKARVNDSSHVGFMMDYPDRHFRYIMRKMIM
>NZ_AP014821.1|WP_066117834.1|1677048_1678392_-|HAMP-domain-containing-histidine-kinase
MNNNHLFKKTQLSLTCWYASIFSGIIALGTLGVYESIVHAHYVTINNELKTVAGTFHDTLEPLLIEPNKLDKTIKNILPDLCLVKEKCKEKYHKNRYITRLIQQGKYYFKFYDLSGNLLGNAGINIDKLYFIYLENELKNIKDSQQINYRQLSVLLHTKDNQEWGYLLIGRSLEDFDNYVNNIKWFLLLGLPLLIILVILASWYLAKKAMLPVYKSYQQIQQFSSDVAHELRTPLAAIKATIDSVILAEKLSIKDYQEILLTINRQNQRIINLVNDLLTLSRLDAINENKHIIEKTDINLLDLIHDLTEELAFLAVENNIKLQQNIQSQEIIIIRGNEAQIYRLLSNLVVNAIQNTPEHGLVTILLSVNKKEVVIKIIDTGIGISEEDKPLIFNRFYRVDKSRNHHQGNSGLGLAIVNSIVLFHNGRIELKSKINQGSIFSVYLPKS
>NZ_AP014821.1|WP_066117836.1|1678517_1679213_-|response-regulator-transcription-factor
MRILLLEDEKDLGIAIKRSLLGQNYVVDWVESGQEGLYLLENPNINYNVGVFDWLLPDLSGIDLLKIIRAKNNHLPVLMLTAKDTMTDKITGLDAGADDYLIKPFEMLELFARIRALLRRNQEIKPQQLKVKNLILDYQTNTIKIELKLGKIEMIPLTNKEFNLLEFFMRHPQQILTRDQLLDQLWEIDSDIISNVVAAQIRLLRKKLSQYECDDLIETVYGLGYRLKLDN
>NZ_AP014821.1|WP_066117838.1|1679247_1679559_-|hypothetical-protein
MTLFHNQKQLRSLHRKLAPIMILPILITFFTGVLFELAVTMDKTDDFIWLLSWHRGNFGLINLEKFYPFLNAFGLLILAISGINLWWQNNFKTKKKNISSPDN
>NZ_AP014821.1|WP_066117840.1|1679683_1679923_+|hypothetical-protein
MNQLLISLLLLTGFVFNFTVNISPVLSHEGHSHCREKDKSKCINNPTQFTKDNDDKKDEDDDKKEGEDKEENHEEDHQH

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Crispr_ID: NZ_AP014821_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014821_5

1923873-1923984

Orphan

Consensus_repeat	Method
AGTCTCAAATGTTTGTATGGACAGGCTATCATAGTAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014821_5

>merge|NZ_AP014821|5|1923873-1923984|CRISPRCasFinder
AGTCTCAAATGTTTGTATGGACAGGCTATCATAGTAAACATTTATCGTTATTTGGGAATCGTTATTATCTATAAGTCTCAAATGTTTGTATGGACAGGCTATCATAGTAAAC

>NZ_AP014821|5|4|1923873-1923984|CRISPRCasFinder
AGTCTCAAATGTTTGTATGGACAGGCTATCATAGTAAAC	ATTTATCGTTATTTGGGAATCGTTATTATCTATA
AGTCTCAAATGTTTGTATGGACAGGCTATCATAGTAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014821.1\|WP_066118221.1\|1931349_1932753_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|225803
NZ_AP014821.1\|WP_066121818.1\|1913361_1914390_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|273374
NZ_AP014821.1\|WP_066118203.1\|1915790_1917026_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224938
NZ_AP014821.1\|WP_066118218.1\|1930330_1931302_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223512
NZ_AP014821.1\|WP_066118205.1\|1917111_1918308_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274604
NZ_AP014821.1\|WP_066118206.1\|1918499_1919594_+\|calcium/proton-exchanger	unknown	unknown	gnl\|CDD\|273043
NZ_AP014821.1\|WP_066118225.1\|1933579_1935019_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990
NZ_AP014821.1\|WP_173645745.1\|1927524_1928886_-\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NZ_AP014821.1\|WP_066118197.1\|1910038_1911787_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_AP014821.1\|WP_066118227.1\|1935644_1936253_+\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|177038
NZ_AP014821.1\|WP_066118210.1\|1921906_1923184_+\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|235488
NZ_AP014821.1\|WP_066118199.1\|1911952_1912675_-\|sugar-transferase	unknown	unknown	gnl\|CDD\|274395
NZ_AP014821.1\|WP_066118223.1\|1932759_1933437_-\|ATP-dependent-Zn-protease	unknown	unknown	unknown
NZ_AP014821.1\|WP_066118229.1\|1936959_1939212_+\|photosystem-I-core-protein-PsaA	unknown	unknown	gnl\|CDD\|176996
NZ_AP014821.1\|WP_144439422.1\|1923312_1923813_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_AP014821.1\|WP_066118208.1\|1919675_1921760_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066118231.1\|1939485_1941714_+\|photosystem-I-core-protein-PsaB	unknown	unknown	gnl\|CDD\|237300
NZ_AP014821.1\|WP_066118216.1\|1929112_1930207_+\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NZ_AP014821.1\|WP_066118201.1\|1914488_1915604_-\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213362
NZ_AP014821.1\|WP_066118212.1\|1925019_1927173_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995

Protein	Function_ID	Function_description	E-value
NZ_AP014821.1\|WP_066118203.1\|1915790_1917026_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224938	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane].	1.89549e-46
NZ_AP014821.1\|WP_066118221.1\|1931349_1932753_+\|mechanosensitive-ion-channel	gnl\|CDD\|225803	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	4.15393e-86
NZ_AP014821.1\|WP_066121818.1\|1913361_1914390_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl\|CDD\|273374	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88., phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins. [Transport and binding proteins, Anions].	1.59276e-109
NZ_AP014821.1\|WP_066118197.1\|1910038_1911787_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.04124e-145
NZ_AP014821.1\|WP_066118218.1\|1930330_1931302_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_AP014821.1\|WP_066118205.1\|1917111_1918308_-\|hypothetical-protein	gnl\|CDD\|274604	TIGR03492, TIGR03492, conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.	2.41044e-150
NZ_AP014821.1\|WP_066118206.1\|1918499_1919594_+\|calcium/proton-exchanger	gnl\|CDD\|273043	TIGR00378, cax, calcium/proton exchanger (cax). [Transport and binding proteins, Cations and iron carrying compounds].	8.81101e-150
NZ_AP014821.1\|WP_066118225.1\|1933579_1935019_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0
NZ_AP014821.1\|WP_173645745.1\|1927524_1928886_-\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NZ_AP014821.1\|WP_066118229.1\|1936959_1939212_+\|photosystem-I-core-protein-PsaA	gnl\|CDD\|176996	CHL00056, psaA, photosystem I P700 chlorophyll a apoprotein A1.	0
NZ_AP014821.1\|WP_066118210.1\|1921906_1923184_+\|adenosylhomocysteinase	gnl\|CDD\|235488	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional.	0
NZ_AP014821.1\|WP_066118199.1\|1911952_1912675_-\|sugar-transferase	gnl\|CDD\|274395	TIGR03022, WbaP_sugtrans, Undecaprenyl-phosphate galactose phosphotransferase, WbaP. The WbaP (formerly RfbP) protein has been characterized as the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.	4.11205e-96
NZ_AP014821.1\|WP_066118227.1\|1935644_1936253_+\|30S-ribosomal-protein-S4	gnl\|CDD\|177038	CHL00113, rps4, ribosomal protein S4; Reviewed.	7.08132e-123
NZ_AP014821.1\|WP_144439422.1\|1923312_1923813_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.95264e-09
NZ_AP014821.1\|WP_066118231.1\|1939485_1941714_+\|photosystem-I-core-protein-PsaB	gnl\|CDD\|237300	PRK13199, psaB, photosystem I P700 chlorophyll a apoprotein A2; Provisional.	0
NZ_AP014821.1\|WP_066118216.1\|1929112_1930207_+\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	0
NZ_AP014821.1\|WP_066118201.1\|1914488_1915604_-\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213362	cd12828, TmCorA-like_1, Thermotoga maritima CorA_like subfamily. This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of this subfamily are found in all three kingdoms of life. It is functionally diverse subfamily, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes Methanosarcina mazei CorA which may be involved in transport of copper and/or other divalent metal ions. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.92854e-163
NZ_AP014821.1\|WP_066118212.1\|1925019_1927173_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0

>NZ_AP014821.1|WP_144439422.1|1923312_1923813_+|pentapeptide-repeat-containing-protein
MLKKLIRFFVLILSLVILFTPHRAMAASSTAVTSTFESKDLSGQDFSGQNLQLAEFTKVKLENANFSNADLRGSVFNGVMADKINLSGSDFTNGLAYVTSFNDADLRNTIFREAIMLRSTFNNAQITGADFTQAVLDSQQIMKLCKYADGINATTGASTRQSLGCP
>NZ_AP014821.1|WP_066118210.1|1921906_1923184_+|adenosylhomocysteinase
MVAIPTKLNYDIKDINLASLGRQRIEWAAREMPVLAQIRDRFNAEKPLAGIRLVACCHVTTETANLAIALQAGGADAVLIASNPLSTQDDVAACLVNDYGMPVFAIKGEDNATYHRHVQTALDHKPNVIIDDGSDVVATLIKERQHQLADLIGTTEETTTGIVRLEAMFRDGVLTFPAMNVNDADTKHFFDNRYGTGQSTLDGIIRATNVLLAGKTLVVAGYGWCGKGVAMRARGLGSNVVITEINPVKAIEAAMDGFRVMPMSEAASIGDVFVTVTGNKHIIRKEHFETMKDGAMVCNSGHFDIEIDLETLKGMSRDVKEVRNFTQQYLLNNGKSIIVLGEGRLVNLAAAEGHPSAVMDMSFANQALACEYLVKNQGSLQPGIHSIPTEVDQEIARLKLQAMGINIDTLTPSQIEYMNSWTVGT
>NZ_AP014821.1|WP_066118208.1|1919675_1921760_+|hypothetical-protein
MSNFQSLWIEGNSSCGKTTRLASLVIEWVQKKASFLQKPLILCANSQGKKNLGDTLLRLNPHCYPGKIRTVFGLMREDVILFYPLICQELDLPSILPLRLRPETEQDLATQLWRESLTPELLGIFGGEYDCVRRILDLMPLAATGGVVSENIADRLLESNIISTNNEKTVIELIGNLILQWRKWCLERGLLSYGLIYELYGRYLLPSNHYQDYLKNNYGAIFCDDVDDYPAIIKNLAEFFLNNAMIGAFTYNQTGKVRLGYNADPEYLQELASHCQQEFLSESRINSLGAKIETSVLNFLRGEFLQEKIPEGIKTIKTDLRGDLLQETADYIIKSIHSGEIQPREIAVIAAGLDEIARYTLVTMIENAGIKVKVLNEQRPLIASAQIRSILTLLPLLYQGLGRLSSPDMIAEMLVILSLEDIDLVRGGLLADYCYLPDLRSPSLLKVETFRRWDRLSHKSLQSYNQIRDWVNDTKIQIEKGDDNLLVVIDRIIKYFFTDKTQLNFSQITVIREFRETAQHFWQVQQRLNNTNTNHLVAQFISLLRKGTITANPFPLTTIPPLQEIQNNAVTIAPIYQYRVSRQHHRWQFWLDVGSCYWSQSRELFASSIFLKSWRSDFTIFDNPLSPLDYEIEPEEKRLTRIIKDLLGRVTEKIFLCHSTLDVNGLEQMGKLSPFFLLNDLNHNQNETLKIIET
>NZ_AP014821.1|WP_066118206.1|1918499_1919594_+|calcium/proton-exchanger
MNKNLIFFILLVFIPISIVGHFLHWSEAVIFITAGLAIIPLAGFMGTATEEIAVVLGPNLGGLLNATFGNATELILAFIALKSGLVQVVKATLTGSIIGNLLLVMGFAMFLGGLRYKEQNFQPTAARLNASTMNLAVIALLLPTAVEYTSTGLTNSTIQTLSIGVAIVLIGVYLLTLLFSMKTHSYLYDVGVAENENEDKEKPPYKPNLVLWVGVLLIVTLGVAVESELLVESLEKATEVLGLPALFTGVIFLPIIGNAAEHATAVTVAMKDKMDLSVSVAVGSSLQIALFVAPVLVLAGWVIGQPMDLNFNPFELVAVAVSVLIANSISSDGNSNWLEGVLLLATYVVIALAFYFHPAIEGLV
>NZ_AP014821.1|WP_066118205.1|1917111_1918308_-|hypothetical-protein
MNDKRAKIIKILLISNGHGEDLNSSLIGEALKSIDHNLRVDSFPIVGEGKSYINKQINIVAPIEAMPSGGIFYLNIINLIKDLLSGLIGLTIRQIITINKIKNNYDLVVAVGDIVPLFFAYLTGKNYYSFIVSTSSYYEGKLKLPFLTKLLLRSSRCQVVFTRDQYTADDLQNQGLKKAKFMGYPIMDTLKPQGKNLELSPETPMIALLPGSRLPEALRNFTLQLQVCETLVKISEQDWAFRGALVPSITEDDLKSIEGWRYELGILTKKVEEKNVVVKVYNDAFADILLHCNLALGMAGTAVEQAVGLGKPVIQIPGKGPQFTYRFAEAQMRLLGNSVMTIDDAENTTLICEKTAQKIIKVLKDREFLAQCIANGIERVGNIGGSLNIAKEITGLFD
>NZ_AP014821.1|WP_066118203.1|1915790_1917026_+|D-alanyl-D-alanine-carboxypeptidase
MFFSHLLAFLFNSSSPPSLPVIPWHEASIFQIPTDRDPQVQVIVDQYLQTLSRQGLATNRQGIWIQSNWAILADNQGKIPAPAASLTKIATTIASLNTWDLNHRFLTKIYTTGNINNGILQGDLIVEYGGDPLFVWEEAIVLGHKLQQLGINQVQGDLIIVGNWQMNYEENPIKSGELLKQGLNSKNWSQIIEKQYKEMKNSPSRPNISIKGSVKKMDIVADNSRLLLTHESLTLREILRLMNVYSNNKIAESLAQQIGGGAKVADITAKLTNIPREEILLQNGSGLGVDNRISPRAACRMLMILESQLEGSDINMGDLFPVAGVDKKGTVEHRNIPYGIPMKTGTLSVVSALAGVIPTAERNHVYFAIINYGSDIEDLRHKQDILLRNLEQHWTFKPLLPQKSIDISFGD
>NZ_AP014821.1|WP_066118201.1|1914488_1915604_-|magnesium/cobalt-transporter-CorA
MTISSNLTPEEKKNYFNYFYDKAGSEPGSLYINSSALPSHITLIEYNKSNASSKVNVKPQDCLSCIDNDLVSWADIQGLGSENILLEIGEVFQLHPLILEDVINVPQRPKMEDYKNQLLVVLHSIKLNKNRSGFLSEQISFVLSKNYLLTFQEDEINDFVTIRERIRLNQGKVRELGTDYLMYLLLDMLIDNYFPVLENYGERIEHLEDQIIVNPSRDTLQKIYRVRRELLALRRSIWPLRNLFNTLIREENELISEEVYVYLRDCYSHTIQILDILETYRELASSSMEFLISSMSNKMNEVITLLTIISSIFIPLTFIAGVYGMNFKYMPELEWHWGYFAVLTLMFLIGIVMIFYFWRRGWFKLFLKKKP
>NZ_AP014821.1|WP_066121818.1|1913361_1914390_+|phosphate-ABC-transporter-substrate-binding-protein-PstS
MTDFNIRRRDFLYGLAGLSGSVIASQLPFESAQAQAVRINGAGASFPAPLFQRWFVEYNKINRNTQVNYQSVGSGAGIKQFMANTVDFGASDVAMKDEDIAKVSRGVVLLPVTAGSVVLAFNNKDVTTVKLTRQQLADIFLGKIKNWNQIGSPKSKPIKVIYRSDGSGTTGVFTKHLAAINSEWKSKVGEGTTVQWTTGIGAKGNEGVTATIQQTDGAIGYIEFGFAKKNGLKTAQLQNKAGKFVPATLQNAAVSLSQIQLPANLRAFAPDPSGDRAYPIVSFSWILAYKKYPDAKKVPSLKQVLNWAVSKTGGQKFSADLGYIPLPDNVIQKVTAAINTIS
>NZ_AP014821.1|WP_066118199.1|1911952_1912675_-|sugar-transferase
MTANSQLVSAKVIQSLARRGLVNISRQPSREQIRVTRAFLKRTFDIIFSASVLVIFSPLYLILAILIAISSPGPIFYAQERVGKNFKHFKCIKFRTMVVNADRVLADMLARCPEKRQEFEENFKLKDDPRITWIGKFLRITSLDEFPQFFNVLKGDMSVVGPRPLVPDELHKYGSKMDKVLTIKPGLTGLWQVSGRNDIPYPQRVLIDVYYVNHHNWFLDLWIILKTIGVVIFPQNSGAY
>NZ_AP014821.1|WP_066118197.1|1910038_1911787_-|ABC-transporter-ATP-binding-protein
MVNNSRLKKLISYLKPHLDKLYWGISALFVVNVIGVYIPWLIRNIFDDLQDNFSLNTIISYVLLLFILACIMWAIRMFSRVLIFGIGRQVEFDLKQLIFEHLLKLEPAYFSINTSGDLINRATSDVDNIRRLVGFAILSLINTVFAYGLTLPAMLLINVKLSLMALAIYPLMLFTVQLFSDKLRLDQLEVQEKLSDVSELIQEDMSGISLIKIYAQEDNEKKAFTEKNQSLLNANLKLAQTRNLLFPIIQGIANISLLILLWFGTNDIEKSLITVGDFIALIIYVERLVFPTALLGFTITTYQRGEVSIDRIDAIINAEPKIKNNASAVTLPIENIKGEIRAVNLNYAYPHSNYLALNNLNFTIEAGELVAIVGLIGSGKSTLANAIPRLLDIDAGQLFLDGIDITTINLTDLRKSIAYVPQESFLFSTTIKNNIAYSNPPGEMLDIEYAAKQAQIHPEIMIFPKQYDTLVGERGITLSGGQRQRSSLARALFADAPILILDDALSSVDNKTATQILENLQQEKGKTIIFITHQLSAVQNADRIFVMEGGKIVQSGKHEELFYQEGLYKSLWQQHQLQEILS
>NZ_AP014821.1|WP_066118212.1|1925019_1927173_-|polyribonucleotide-nucleotidyltransferase
MEEYNKSISFFEGRDIKIKVGLLAPQAGGTVLIQAGETAVLVTATRTKGREGIDFLPLTVDYEERLYAAGRIPGGFLRREGRPPERATLTSRLIDRPLRPLFPSWLRDDLQIVATTLSMDEEVPPDVLAVTGASIATLVAQIPFYGPMAAVRVGLVHDEFIINPTFREIENGDLDLVVAGTPDGIVMVEAGANQLPEQDIIEAIEFGYEAILELIQAQKDLIQELGIEIKIENKEEDNPAVVNFIHEKASEEIKQILCHFDYDKNARDEALDTIQASVQEAINALGDEDEIKIAIAENSKLLPNLFKQLTKKLMRRQIIEDGVRVDGRKLDQVRPISSRVGLLPARVHGSGLFQRGLTQVLSIATLGTSGDAQDLADDLHPDFEKRYLHHYNFPPYSVGETKPLRPPGRREIGHGALAERAITPVLPPQEDFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLIKEGDEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLRMETISEAVKQAREARLHILGEMMKTINTPRTELSPYAPRLMTMKIDPDMIGLVIGPGGKTIKGITEQTGSKIDIADDGTVTICAVQAERAQQAKRIIQTMTRKLNEGDVYLGRVTRVIDIGAFVEVLPGKEGMIHISQLAEHRVGKVEDEVTIGDEIVVKIRGFDQKGRLNLTRLGIHPEQAAIARQESQI
>NZ_AP014821.1|WP_173645745.1|1927524_1928886_-|ribosome-biogenesis-GTPase-Der
MMLPIVAIIGRPNVGKSALVNRLSGEQDAIVYDEPGITRDRTYRPAFWRDREFQVVDTGGLVFDDDTEFLPFIREQARAALAEAVAAIFVVDGQMGLTAGDEEIAAWLRTQNVPIVLAVNKCESEKQGLIQSAEFWNLGLGEPYALSAIHGNGTAELLDDLIQYLPTIDEIEEIEEIRVAIIGRPNVGKSSLLNALTGENRAIVSPVSGTTRDAIDMVVERNGKTYRLIDTAGIRRKKNVDYGAEFFGINRAFKAIKRADVVLFVIDVLDGVTEQDLKLAGRIIEEGRAAIIIANKWDAVEKDSHTIYEYQKMLDDRLFFMEWAERVFVSAMTGKRVETILDLVDNAAEGHKKRVTTAVINEVLEEATKWHSPPTTRQGKQGRIYYGTQVASKPPTIALFVNDPKRLDNNYRRYIEKQFRQQLGFKGTPLKLLWRGKRLREGENLGANRATKV
>NZ_AP014821.1|WP_066118216.1|1929112_1930207_+|alkene-reductase
MVNLNIFSPFHLGDYILPNRIIMAPMTRLRANSDGTPTELMGTYYAQRATAGLIITEATMISPLSHGYMNCPGIYNDKQTEGWKLVVEKVHQQQGKIFLQLWHSGRISHPALLNGELPIAPSEISAVGHLHTPIGKVSLETPRALDIKEIPLIVEQFYQASVNALNAGFDGVELHGAFGYLIDQFLQDSSNKRTDEYGGSIANRSRFLLEIVEAVRGVWGDKKVGIKLSPSNTFYGISDSNPVNLFSYILNVLNDYNLAYIHLMEPSDIDLATGNVITSVLDTFKNFYNGTIITNGGYDKSKANDVISSEKADLVSFGRPFIANPDLVTRLEISASLNETDGKTIYGQGTNNAEHGYTDYPFLT
>NZ_AP014821.1|WP_066118218.1|1930330_1931302_+|glutathione-S-transferase-family-protein
MGLLVNGVWSNQLYDAVTDQGKFIRQASQFRNWITSNGSAGITGKGGFKAESGRYHLYISLACPWAHRTLIFRTLKRLENMITISIVNWFMGENGWTFAEDEGVISDPLFNAEYLYQIYTEGDANYTGKVTVPVLWDKETHTIVNNESAEIIRMFNSAFNRIGGKENDYYPKDLRQEIDSLNDRIYHNINNGVYKCGFATTQQAYEEELIPLFETLDWLEEKLSRQRYLTGDRITEADWRLFPTLVRFDAVYVGHFKCNIRRIVDYPNIWGYLRELYQIEGIAQTVNFRHIKRHYYQSHKTINPTGIVPFGPEIDFLLPVDRF
>NZ_AP014821.1|WP_066118221.1|1931349_1932753_+|mechanosensitive-ion-channel
MIKWLNNIFTNPLFSLKGNSISLGWILQVLGLLILVTLFARFTKKFLKNRILLTFKISDSNREVISTFIAFSIASIGYIIAIQTMGINLTSLAVIIGGLGVGIGFGFQDLTRNLISGVTLLAEGKLKVGNLIQFQEKLGYIREISIRCTVVKTIEGSELIIPNTELTNSTVINWNYDNCQGRIEIKIGIAYGSDLLLVTDVLLKSASLIKEVLHNPPPKVIFLGFGDNALDFALWIWVNKINLTPFIKSSLLYVIEHNLRKNNIKIPFPQRDIWLQNVDSFEDIQNIPKQVLTPHESLKELLFKFNLFHDFDDLQLIRLIEMSSQRYLYPEEILIKQGEYGDFFALILEGEIEAILETNITKNSLFFFTQGQYFGELPLLLNTPYPTTMKATKLTRLFLINGENFHNLIKEYPFLAEQIIQELSDRQNIIQLCQKQLQEMGLLQQEEIKNPLLWLRKYFKQIFTCET
>NZ_AP014821.1|WP_066118223.1|1932759_1933437_-|ATP-dependent-Zn-protease
MQEETGLNILAITIFTITLSVLLGPLFNLSPYIPAGVTFLLLGLVTFDTLSWKNQGVNLLLNIFASQEQKQRIIYHEAGHFLTAYLYQIPITGYNLSPWEAIKNSSVGLGGVIFDTNFLKEKYQDVKEFNRSIERFGVVLMAGIAGEQFIYNNSQGGEDDVQQFQKIYSNLTLTSSNFQIKKRLAILQATTIIKENKESYLALVEAMKQRKSITECQEIISIYKS
>NZ_AP014821.1|WP_066118225.1|1933579_1935019_-|Fe-S-cluster-assembly-protein-SufB
MSASVKTLVNQPYKYGFITDIESDTIPKGLSEDVVRLISMKKNEPEFMLEFRLKAYRQWLKMTEPKWAHVGYPSINYQDIIYYSAPKQQKKKLDSLDEVDPTLLETFEKLGIPLSEQKRLGNVAVDAIFDSVSIATTFKDKLAKDGVIFCSISEALQEHPDLVQKYLGSVVPSADNYFAALNGAVFSDGSFVFIPKGVKCPMELSTYFRINNGDTGQFERTLIVAEEGASVSYLEGCTAPMYDSNQLHAAVVELIALDNAEIKYSTVQNWYAGDEKGKGGIYNFVTKRGLCKGVNSKISWTQVETGSAITWKYPSCVLIGDNSIGEFYSIALTNNMQQADTGTKMIHIGKNTRSTIISKGISAGNSKNSYRGLVKMGNKATGARNYSQCDSMLIGDNAQANTFPYIQVDNSGAKVEHEASTSKIGEDQLFYFAQRGISEENAVSMLVSGFCKDVLNELPMEFAAEADKLLSLKLEGSVG
>NZ_AP014821.1|WP_066118227.1|1935644_1936253_+|30S-ribosomal-protein-S4
MARYTGPRLRVVRRLGDLPGLTRKNARRQYPPGQHGQNRRKRSEYAIRLEEKQKLRYNYGVSETQLVRYVKKARRVTGSTGQVLLQLLEMRLDNTVFRLGMAPTIPGSRQLVNHGHIMVNGKVVDIASYQCRPGDVISVRKRDRSVNIVKNNLLNPGLANLPSHLEFDKDNLTGKVNGVIEREWVALNINELLVIEYYSRKA
>NZ_AP014821.1|WP_066118229.1|1936959_1939212_+|photosystem-I-core-protein-PsaA
MTVSPQKEAKAKVIVDKDPVPTSFEKWGKPGHFDRTLARGPKTTTWIWNLHADAHDFDSQTSDLEDISRKIFSAHFGHLAVVFVWLSGMYFHGAKFSNYSAWLADPLNVKPSAQVVWSVVGQDILNGDVGGGFHGIQITSGLFQLWRASGITNEFQLYCTAIGGLVMAGLMLFAGWFHYHKAAPKLEWFQNAESMLNHHLAGLLGLGSLGWAGHQIHVSLPINKLLDAGVAPQDIPLPHEFILDPSKMAELYPSFAQGLTPFFTLNWGVYSDFLTFKGGLNPVTGGLWLSDTAHHHLAIAVLFIIAGHMYRTNWGIGHSIKEILEGHKGPFTGEGHKGLYEILTTSWHAQLAINLALLGSLTIIVAQHMYAMPPYPYLATDYGTQLSIFTHHMWIGAFLIVGAGAHASIFMVRDYDPAKNVNNLLDRVLRHRDAIISHLNWVCIWLGFHSFGLYIHNDTMRALGRPQDMFSDSAIQLQPIFAQWIQGLHTAAAGATAPFAGATASYAFGGDVVAVGGKVAMMPITLGTADFMVHHIHAFTIHVTVLILLKGVLYARSSRLVPDKAELGFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGTVLPDGTVSHITGGNFAQSAITINGWLRDFLWAQAANVINSYGSALSAYGIMFLAGHFIFAFSLMFLFSGRGYWQELIESIVWAHNKLKLAPAIQPRALSIVQGRAVGVAHYLLGGIVTTWAFFLCRILSVG
>NZ_AP014821.1|WP_066118231.1|1939485_1941714_+|photosystem-I-core-protein-PsaB
MATKFPKFSQDLAQDPTTRRIWYGIATAHDFETHDGMTEENLYQKIFASHFGHLAIIFLWTSGTVFHVAWQGNFEQWIKDPLNVRPIAHAIWDPHFGQGAIDAFTQAGASSPVNVAYSGVYHWFYTIGMTNNQDLYTGAVFLLILSSLFLFAGWLHLQPKFRPSLSWFKNAESRMNHHLAGLFGVSSLAWAGHLIHVAIPESRGVHVGWDNFLSVKPHPAGLAPFFTGNWGVYAQNPDTASQVFGTSDGAGTAILTFLGGFHPQTESLWLTDIAHHHLAIAVIFIIAGHMYRTNWGIGHSMKDILAAHNPPQGTPFGGMIGAGHKGIYDTYNNSLHFQLGWHLACLGVVTSLVAQHMYSMPSYAFIARDYTTQAALYTHHQYIAGFLMVGAFAHGAIFLVRDYDPEGNKDNVLARVLEHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPEKQILIEPVFAQWIQAAHGKALYGFDTLLSNPDSVASTAYPNYGNVWLPGWLDAINSGTNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGFSFPCDGPGRGGTCDISAWDSFYLAMFWMLNTLGWLTFYWHWKHLGIWTGNVAQFNENSTYLMGWFRDYLWANSAQLINGYNPYGVNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETIVWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFTVGYILTYAAFLIASTAGKFG

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Crispr_ID: NZ_AP014821_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014821_6

2815804-2815909

Orphan

Consensus_repeat	Method
AAATTATACCCAAATAAACCCTAAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014821_6

>merge|NZ_AP014821|6|2815804-2815909|CRISPRCasFinder
AAATTATACCCAAATAAACCCTAAACTCTTTTTATAAGCTACAAATACGTCAATATTTTCATTCACGGTACTTAGACAAAAATTATGCCCAAATAAACCCTAAACT

>NZ_AP014821|6|5|2815804-2815909|CRISPRCasFinder
AAATTATACCCAAATAAACCCTAAACT	CTTTTTATAAGCTACAAATACGTCAATATTTTCATTCACGGTACTTAGACAA
AAATTATGCCCAAATAAACCCTAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014821.1\|WP_066119597.1\|2801346_2801628_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066119602.1\|2802239_2803418_+\|ArsA-family-ATPase	unknown	unknown	gnl\|CDD\|223082
NZ_AP014821.1\|WP_066119614.1\|2816400_2816721_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066119627.1\|2826481_2828311_-\|DNA-phosphorothioation-associated-putative-methyltransferase	unknown	unknown	gnl\|CDD\|274979
NZ_AP014821.1\|WP_173645715.1\|2809635_2810340_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|226983
NZ_AP014821.1\|WP_066119616.1\|2818164_2818500_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_071828042.1\|2813169_2814633_+\|family-10-glycosylhydrolase	unknown	unknown	gnl\|CDD\|224563
NZ_AP014821.1\|WP_066119609.1\|2808817_2809612_-\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|273235
NZ_AP014821.1\|WP_066119600.1\|2801734_2801983_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066119625.1\|2825149_2826166_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_AP014821.1\|WP_066119620.1\|2820146_2821940_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_AP014821.1\|WP_066119622.1\|2822313_2822760_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|227924
NZ_AP014821.1\|WP_071828043.1\|2817055_2817922_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320684
NZ_AP014821.1\|WP_066115324.1\|2806559_2807825_+\|IS701-family-transposase	unknown	unknown	gnl\|CDD\|379252
NZ_AP014821.1\|WP_066118659.1\|2811489_2812488_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_AP014821.1\|WP_066115324.1\|2823222_2824488_-\|IS701-family-transposase	unknown	unknown	gnl\|CDD\|379252
NZ_AP014821.1\|WP_066121893.1\|2814842_2815730_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_AP014821.1\|WP_066119604.1\|2803898_2804438_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_AP014821.1\|WP_066119618.1\|2819084_2820017_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|215315
NZ_AP014821.1\|WP_066121895.1\|2822819_2823107_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP014821.1\|WP_066119602.1\|2802239_2803418_+\|ArsA-family-ATPase	gnl\|CDD\|223082	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning].	2.37166e-132
NZ_AP014821.1\|WP_066119627.1\|2826481_2828311_-\|DNA-phosphorothioation-associated-putative-methyltransferase	gnl\|CDD\|274979	TIGR04096, conserved_hypothetical_protein, DNA phosphorothioation-associated putative methyltransferase. Members of this protein family show distant local sequence similarity to a number of S-adenosyl-methionine-dependent methyltransferases. The family is identified by Partial Phylogenetic Profiling as closely tied to the DNA phosphorothioation system (dnd), and members are found adjacent to dnd genes in at least 13 species (Streptomyces lividans TK24, Shewanella frigidimarina NCIMB 400, Mycobacterium abscessus ATCC 19977, Nostoc punctiforme PCC 73102, Vibrio fischeri MJ11, etc.). The DNA phosphorothioation enables a novel form of restriction enzyme activity. Most members of this family appear in species with the DNA phosphorothioation system. [DNA metabolism, Restriction/modification].	0
NZ_AP014821.1\|WP_066119618.1\|2819084_2820017_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|215315	PLN02578, PLN02578, hydrolase.	5.86318e-92
NZ_AP014821.1\|WP_071828042.1\|2813169_2814633_+\|family-10-glycosylhydrolase	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	7.10972e-10
NZ_AP014821.1\|WP_066119609.1\|2808817_2809612_-\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|273235	TIGR00726, Laccase_domain_protein, YfiH family protein. PSI-BLAST converges on members of this family of uncharacterized bacterial proteins and shows no significant similarity to any characterized protein. No completed genome to date has two members. Members of the family have been crystallized but the function is unknown. [Unknown function, General].	5.06814e-55
NZ_AP014821.1\|WP_066119625.1\|2825149_2826166_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_AP014821.1\|WP_066119620.1\|2820146_2821940_-\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_AP014821.1\|WP_066119622.1\|2822313_2822760_+\|SRPBCC-family-protein	gnl\|CDD\|227924	COG5637, COG5637, Predicted integral membrane protein [Function unknown].	8.9087e-65
NZ_AP014821.1\|WP_071828043.1\|2817055_2817922_-\|M48-family-metallopeptidase	gnl\|CDD\|320684	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48 family Ste24p-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi. Some members also contain ankyrin domains which occur in very diverse families of proteins and mediate protein-protein interactions.	8.08687e-78
NZ_AP014821.1\|WP_066115324.1\|2806559_2807825_+\|IS701-family-transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.14683e-37
NZ_AP014821.1\|WP_066118659.1\|2811489_2812488_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	7.64228e-37
NZ_AP014821.1\|WP_066115324.1\|2823222_2824488_-\|IS701-family-transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.14683e-37
NZ_AP014821.1\|WP_066121893.1\|2814842_2815730_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.81553e-89
NZ_AP014821.1\|WP_066119604.1\|2803898_2804438_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.39586e-39
NZ_AP014821.1\|WP_173645715.1\|2809635_2810340_-\|Uma2-family-endonuclease	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	8.3804e-19

>NZ_AP014821.1|WP_066121893.1|2814842_2815730_+|ABC-transporter-ATP-binding-protein
MLNIKDLTKIYDHQEVLKNFNLDIKKGEIYSLLGANGAGKTTTINIICGLLTYDSGEIKINDEKFNHKSKYLLGIAPQENILYSQLSCEENLSFFGKLYGLKGTKLKTAIYKSLQAVNLLEKKDQTVEILSGGMQRRLNIALALIHNPQLLILDEPTTGLDIESRYEIWQLIQSLKQEGITILLTTHFLDEAEKLSDRIGIMKEGKIIVEGTLTQLKETIPAKELIFVTTEEKEKAIEQGKKLGFSHRFYQGELAFLSDKSLELTEIIRLFEGINLSAITKKTIDLEHIYLQVTK
>NZ_AP014821.1|WP_071828042.1|2813169_2814633_+|family-10-glycosylhydrolase
MLKNSWSKITMPMARCAIALISFVSQTVIPFPANAITNSYCQFEQNEITTKETLRQNAIAGNPTAQEQYKKVIQQHRDMLINCRRNNWLKEQAIWLRIYPCDVRDGSIDKVLDTIVNKGYNTVYVEVFFDGQVLLPKNGNYTPWPSVVDMAGYENRDLYAETLQKGRERGLKVYAWLFSMNFGYLYAQRSDRQNVLARNGKGQTSVDFVHDKSQAFIDPYSPQARQDYTQLLQAVLQRRPDGVLFDYIRYPRGSGKDSVVGKVKDLWIYSEASKQTLLKRAQNKQGRWLLERYINQGMINANDIAQMKNLYSDEKTPLWQGKSPSASNNLSTLQLDIWYFTVAHAAQGVIDFLEFSSNQVKQRGITTGAVFFPDGNQVVGDIGFDSRLQPWDSFSQSMEWHVMSYALCGNPNCIVEQVKRVLQASSQGSNVKPVLAGFWGKNEGQRPSLESQMEGIRASARSVQSISHFAYSWLEVENTRQRQSCSN
>NZ_AP014821.1|WP_066118659.1|2811489_2812488_-|IS630-family-transposase
MRFVTRLAPETQQLLKTIEQKSKYYQVRHRAKSILLSYQGYKITQIMLILNISRNTIYNWLNNWEKNGLNGLYSLKGRGRKSTLNEQQELKVKEWIKSHPKTLKIVQEKIENEWEIKISKDTIKRLAKKKGMGWYRFKKKVKGEVCPELYQQKKRQLEQLKRAENEGKIDIYYGDESGFSLVPCLPYGWQEKGRKIERESSLSKRLNVLGFMKKNNELESYVFESSINSDVVIACIDNLSKKIKKETVLVMDNASIHQNKKFWNKEEEWEKKGLKIFFLPPYSPQLNKIEILWRFMKYKWLENSCYKSYLDLVKGVENILINFGSKYTINFA
>NZ_AP014821.1|WP_173645715.1|2809635_2810340_-|Uma2-family-endonuclease
MAISVDFDRNIIYPDSDGQPMADNTKQFSWIVLLKENLECLFAQNPAVFVAGDLLWYPVEGRPDIRVAPDVFVVFGRPKGDRGSYRQWQEDNISPQVVFEILSPGNTFKEMIKKQQFYDRYGIQEYYIYDPDDNELTGLQRVEGNLIMIEEVSDWISPLLGIRFIMTEETLEVYYPDGQPFLTTVELRQKAQDEKLRADQERLRADQEKLRADQAQSEIDRLRQLLRESDINQQ
>NZ_AP014821.1|WP_066119609.1|2808817_2809612_-|peptidoglycan-editing-factor-PgeF
MNNNFSSQWQWQETEKGSYLTCKLLRDWQHGFFSSHFQGQPPEILVKYLHPSASSYRVKQIHSDVVVSTDDIDSVKNNTNLVEGDGIITKKPLQSVWAASADCTPVLIADRSTGKVTAIHSGWRGTASKIVPKVINLLKSQGSKKENLLFALGPAIHGKVYQVDQAVATTVLKTVIPEDLEASLILEKGYQLSNEPILPDTEENKVKLNVTQVINLQIQQENISPEQITIAPYCTYQNPEYFFSYRRTKEKNVQWSGIVSLFNS
>NZ_AP014821.1|WP_066115324.1|2806559_2807825_+|IS701-family-transposase
MKEITSSSMPPCFNRWCEKIDPVLKTKAQKREFRNYLGGLLGDSQRKNITQIAHNNLDITYHKLHHFLTESTWNYDEVNDKRLEIIASCRQTKISRCFSLIIDDSGHRKSGNFTDCVGRQYIGEIGKTDNGNVIVTTHIYDGVRSFPLDVELYEKAENFPEGKDAPQFQKKPDIAFNLIEKCLNRNYCPQIILMDGGYGNNTNLLGKLEKKNLKYIGIIAKNRLVKLVKQDFIESEKTIAEIAKSLPQDSFEKIRIGKNREKTLWVATINIELSALSGIKTVAIVMNADTFENSTDIDYLMTNEIGEKVCGNWIVETYTQRNWIEVFYREIKGWLGLSQYQVRNKRSLMRHFILVFCAYTFIQWHRLTGGLRRQWGNKPLNTFAEALEAFRNAVSFRFFQWLKDNVEVFSLYKASLGFIWA
>NZ_AP014821.1|WP_066119604.1|2803898_2804438_-|IS630-family-transposase
MREINEEDLIFVDESGSNLAMLRLYGRAKKGYRVRGEKPQKRGGNVSIVTAISLKEVVASRNIYGSVDGLTFEAFVIRDLVPKLWVGACVVMDNAKIHLGETIRKEIEKVGASLVYLSPYSPDFSPIENFWSKVKNQIRKLKPRNYHDLVEAIGKAMEQVTQLDMHNWFTHCCYCTSSF
>NZ_AP014821.1|WP_066119602.1|2802239_2803418_+|ArsA-family-ATPase
MRVILMTGKGGVGKTSVAAATGLKCAELGYKTLVLSTDPAHSLADSFDMELGHEPQPVVNNLWGAELDALMELEGNWGAVKRYITEVLQARGLDGVQAEELAILPGMDEIFGLVRMKRHYDEGDFDVLIIDSAPTGTALRLLSLPEVSGWYMRRFYKPFQTMSAALRPLFEPIFKPIAGFSLPTNEVMDAPYEFYQQIEALEKVLTDNTQTSVRLVTNPEKMVIKESLRAHAYLSLYNVSTDLIIANRIIPDEVEDPFFKKWKENQSIYKQEIHDNFHPLPVKEVPLFSEEMCGLKALERLKDILYQDEDPSKVYYAENTIRVVQEDNNYSLELYLPGIPKQQIKLNKTGDELNIRIGNHRRNLVLPQALAALTPSGAKMEEDYLKIKFSKG
>NZ_AP014821.1|WP_066119600.1|2801734_2801983_-|hypothetical-protein
MVDQNKQDKENFIFPHTSYRGEFTPENLMFNANLQEFAQKVSYICNLETNGKIPPQDAYKQIKNLWEDLRQSIKNLGIKDKK
>NZ_AP014821.1|WP_066119597.1|2801346_2801628_+|hypothetical-protein
MLNFSKSYEEKLVKELIIITEKVEKNKFNNISCLNNLNKTISDMESYCRIWGETLKNNLMLSQARLGLIALSLHYYQNIFYTLFDRQLPQEIT
>NZ_AP014821.1|WP_066119614.1|2816400_2816721_+|hypothetical-protein
MDLSSISLRGAEIWRIWTAHNIIEQFWKILKSVLKIAEMKLRKQGIYTGLLIKIIMYLMLLSIQFMVNFRRLSLTQIMRKIQSSTRLTDVIKEHFQHDFLGISAIV
>NZ_AP014821.1|WP_071828043.1|2817055_2817922_-|M48-family-metallopeptidase
MTVKLIGLKADHFRHPLDYEATTRLKQIPGLDLAMRGLLGSVAEDFFYLNNIASSILIGEKQLPDLHQLLLSACEILDIETPQLYIQQNPVPNAYTLAIRGKKPFIVIHTSLLEILTENEIKAVIAHELGHLKCEHGVYLSLANIMVLAAGLIPSWGTLVAQSLQNQLLQWVRCAEFSCDRSALLVVQDPKIVMSVLMKLTGGSPSIANKLNLEAFMEQVKEYQNMGNTEIGRMLQEMQTQQLTHPIPIIRAKEIENWSRSSKYYELLKKDKISYNSEDENSGGWRNW
>NZ_AP014821.1|WP_066119616.1|2818164_2818500_+|hypothetical-protein
MRGVHRTSTTQMEVTSIRLEKTLKDSLKALSGSQGYQTLIRDILWNYVQQKSGEYRPNFSKTDIRATIPATARKDESCVLSGKLISENDAMLLALTIHGDFVPVSEDAISK
>NZ_AP014821.1|WP_066119618.1|2819084_2820017_-|alpha/beta-fold-hydrolase
MTVITNSIHDVPAVEGNYWQWRGEKIYYVQAGRSQSGAARSNSDKPPLLLVHGFGASTDHWRKNIYQLQENFSVWAIDLLGFGRSNKPAWEYTGNLWREQLNDFIVEVIKQPTVIAGNSLGGYACLCTAAEYHDNVAGVILLNSAGPFSDTIKKKPTVIQKISGWVLRQNWITYLLFQRLRHKKNIRKTLEKVYLDSTAITDQLVEDIYRPSCDEGALQVFGSVFKSPQGEKVDQLLQKMQCPLLNIWGEGDPWMRSKERGEKFKQYYPNLTEFYLKAGHCPHDEVPEEVNNLITTWILDRPFLVITNAK
>NZ_AP014821.1|WP_066119620.1|2820146_2821940_-|translational-GTPase-TypA
MSLPIRNLAIIAHVDHGKTTLVDALLKQSGIFREGEEVPTCVMDSNDIERERGITILSKNTAVRYKDTLINIVDTPGHADFGGEVERVLGMVDGCVLIVDANEGPMPQTRFVLKKALEKGLRPIVVVNKIDRPRSEPDKAVDKVFDLFVELGADDDQCDFTTLYASGISGFAKENLDDENVDMKPLFEAILHHVPPPAGDPNKPLQLQVTTLDYSEYLGRIVIGKIHNGTIQAGQQAALIKEDGSIVKARISKLLGFNGLQRVELEEATAGYIVAVAGFADANIGETITCPTEPQALPLIKVDEPTLRMTFSVNNSPFAGQEGKFVTSRQIRDRLDKELQTNVALRVEDGESAEQFVVSGRGELHLGILIENMRREGFEFQVSQPQVIYREVNGQPYEPFEYLVLDVPEEAQGSCIERLGQRKAEMQDMQSSGNGRTQLEFIVPARGLIGFRGDFIRMTKGEGIMNHSFHEYRPLVGDLDTRYNGVLISFEEGVSTFYAMKNAEDRGIFFIHPGTKVYRGMIIGESNRAQDVEINVCKTKQLTNHRAATGDELVQLQAPIEMSLERALEYIGPDELVEVTPESIRLRKLPSKKLAKR
>NZ_AP014821.1|WP_066119622.1|2822313_2822760_+|SRPBCC-family-protein
MSKWLEHSVEVEVDAPIDLVWNLWSDLEQMPLWMKWIDSVKILPDDPDLSRWKLASGGFEFSWLSRIVKLETHQIIQWESVDGLPNRGAVRFYDRHGSSIVRLTIAYAIPGILGQLMDNLFLGQIVESTIEADLDRFKNYAIKVQNKA
>NZ_AP014821.1|WP_066121895.1|2822819_2823107_+|hypothetical-protein
MNLNKTFLNGFWPLLSNIGIKLVQFFPIYMILLIAYGDRFLPSPLSDFSANTRNTINKVLVGSFNEDVLENNKYNNKKTDKVIKEVEGKNKKDAK
>NZ_AP014821.1|WP_066115324.1|2823222_2824488_-|IS701-family-transposase
MKEITSSSMPPCFNRWCEKIDPVLKTKAQKREFRNYLGGLLGDSQRKNITQIAHNNLDITYHKLHHFLTESTWNYDEVNDKRLEIIASCRQTKISRCFSLIIDDSGHRKSGNFTDCVGRQYIGEIGKTDNGNVIVTTHIYDGVRSFPLDVELYEKAENFPEGKDAPQFQKKPDIAFNLIEKCLNRNYCPQIILMDGGYGNNTNLLGKLEKKNLKYIGIIAKNRLVKLVKQDFIESEKTIAEIAKSLPQDSFEKIRIGKNREKTLWVATINIELSALSGIKTVAIVMNADTFENSTDIDYLMTNEIGEKVCGNWIVETYTQRNWIEVFYREIKGWLGLSQYQVRNKRSLMRHFILVFCAYTFIQWHRLTGGLRRQWGNKPLNTFAEALEAFRNAVSFRFFQWLKDNVEVFSLYKASLGFIWA
>NZ_AP014821.1|WP_066119625.1|2825149_2826166_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MSKIKIGINGFGRIGRLVFRAGLDNPNIEFVGINDLVPPRNIAYLLKYDSTHGKFKGTVEAKADGIEVNGKLIPCVSVRNPEELPWGELGADYVVEATGLFIDYEGAGKHLKAGAKKVVISAPTTEPDKVVTLLMGVNNETYNPENDHIVSNASCTTNCLAPIAKVIDDNFGLVEGLMTTIHAMTATQPTVDGPSKKDLRGGRSATQNIIPASTGAAKAVALVLPQLKGKLTGMAFRVPTPDVSAVDLTFKTEKATTYEAICQAMKKASETDLKGILAYTDEAVVSSDFITDPHSSIFDAGAGIELNSNFFKVISWYDNEWGYSNRMIDLILFMANKK
>NZ_AP014821.1|WP_066119627.1|2826481_2828311_-|DNA-phosphorothioation-associated-putative-methyltransferase
MFNNCDEIFNIARQSVIGKHLPNNLYVHISALIFLDNALQEYEKIARNIINNIDDFTIVKFNLEETKISYLFYPDFDNNPHPPLVKSVIINLTEKTNKIIDYSQSNNPPILHRKETFINENYPNYQKFKYLTSIEEKLGLLDNTRYIGTKKEWEQLLIDHSLTFIDHYLVCNLENNPQEFIKIDRHKAAIHRNRLSRPVNLALEAGLFSSETSFFDYGCGHGLDVKIMAENGYESSGWDLFYRPNNPLKKSDIVNLGYIINVIENVRERREALLKAWSLTQQVLIVAAQVLIDDRQRGFMVYGDGIVTERNTFQKYYDQEELKTYIENVLNQEAIPAGLGIYFVFRDQEKANNFRASRFHSKVRTPRILLPVKKFADYQQLLTPLMNFYTERGRLPQKGELSQEAEIKAEFRSFKQAFKVILQVTNEAEWDEIADRRRQDILLYLALSHFNTRPTIRQLSPILKADIKDLFGNYQAACFLADEMLITLRNLNIIKEICQDLKVGKVFEKSYLIHLSMLDSLPTLLRLYEGCASRTIGRMEGANLIRFYFNIPRISYLYVPDFDSKKEPILKTTMSIDLQDLRVQYRNFAHDQNAPIIKDKYLLKIPENN

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Crispr_ID: NZ_AP014821_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014821_7

2935667-2935980

Unclear

Consensus_repeat	Method
GTCTAAACTATAATAAATACCTACTAG	PILER-CR
GTCTAAACTATAATAAATACCTACTAG	CRISPRCasFinder
GTCTAAACTATAATAAATACCTACTAG	CRT

4 spacers

cas1,cas4,cas6,PD-DExK,WYL

The CRISPR arrays of NZ_AP014821_7

>merge|NZ_AP014821|7|2935667-2935980|PILER-CR,CRISPRCasFinder,CRT
GTCTAAACTATAATAAATACCTACTAGAAATCAGAACCAGATATTGAAGTAGAAGAAGATTATCCCATATTATGTCTAAACTATAATAAATACCTACTAGAAATCAGAAGAAATATTAGATGTTTTAGAGAGAATGAAAGGGGAAGTCTAAACTATAATAAATACCTACTAGGGATTGAAACGATATTTTATATTTTCATTGTAGGTATTTACAGGGTCTAAACTATAATAAATACCTACTAGGGATTGAAACACCTGATAATACGGCGATCGTAAATCCTAAGAGTGTCTAAACTATAATAAATACCTACTAG

>NZ_AP014821|7|4|2935667-2935980|PILER-CR
GTCTAAACTATAATAAATACCTACTAG	AAATCAGAACCAGATATTGAAGTAGAAGAAGATTATCCCATATTAT
GTCTAAACTATAATAAATACCTACTAG	AAATCAGAAGAAATATTAGATGTTTTAGAGAGAATGAAAGGGGAA
GTCTAAACTATAATAAATACCTACTAG	GGATTGAAACGATATTTTATATTTTCATTGTAGGTATTTACAGG
GTCTAAACTATAATAAATACCTACTAG	GGATTGAAACACCTGATAATACGGCGATCGTAAATCCTAAGAGT
GTCTAAACTATAATAAATACCTACTAG

>NZ_AP014821|7|6|2935667-2935980|CRISPRCasFinder
GTCTAAACTATAATAAATACCTACTAG	AAATCAGAACCAGATATTGAAGTAGAAGAAGATTATCCCATATTAT
GTCTAAACTATAATAAATACCTACTAG	AAATCAGAAGAAATATTAGATGTTTTAGAGAGAATGAAAGGGGAA
GTCTAAACTATAATAAATACCTACTAG	GGATTGAAACGATATTTTATATTTTCATTGTAGGTATTTACAGG
GTCTAAACTATAATAAATACCTACTAG	GGATTGAAACACCTGATAATACGGCGATCGTAAATCCTAAGAGT
GTCTAAACTATAATAAATACCTACTAG

>NZ_AP014821|7|3|2935667-2935980|CRT
GTCTAAACTATAATAAATACCTACTAG	AAATCAGAACCAGATATTGAAGTAGAAGAAGATTATCCCATATTAT
GTCTAAACTATAATAAATACCTACTAG	AAATCAGAAGAAATATTAGATGTTTTAGAGAGAATGAAAGGGGAA
GTCTAAACTATAATAAATACCTACTAG	GGATTGAAACGATATTTTATATTTTCATTGTAGGTATTTACAGG
GTCTAAACTATAATAAATACCTACTAG	GGATTGAAACACCTGATAATACGGCGATCGTAAATCCTAAGAGT
GTCTAAACTATAATAAATACCTACTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014821.1\|WP_066119808.1\|2927782_2928070_+\|metal-binding-protein	unknown	unknown	gnl\|CDD\|370734
NZ_AP014821.1\|WP_066119817.1\|2931801_2932617_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NZ_AP014821.1\|WP_066119835.1\|2945595_2945997_+\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|224750
NZ_AP014821.1\|WP_173645717.1\|2930578_2931184_+\|hypothetical-protein	PD-DExK	mkCas0061_PD-DExK_CAS-I:CAS-III	unknown
NZ_AP014821.1\|WP_066119806.1\|2927480_2927786_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|183845
NZ_AP014821.1\|WP_066119813.1\|2929999_2930554_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066119833.1\|2945354_2945603_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|176950
NZ_AP014821.1\|WP_066119827.1\|2942618_2943020_-\|phosphomannose-isomerase-type-II-C-terminal-cupin-domain	unknown	unknown	gnl\|CDD\|380343
NZ_AP014821.1\|WP_066119821.1\|2936212_2937472_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_AP014821.1\|WP_066119829.1\|2943050_2943449_-\|DUF4359-domain-containing-protein	unknown	unknown	gnl\|CDD\|372990
NZ_AP014821.1\|WP_066119815.1\|2931211_2931781_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NZ_AP014821.1\|WP_066119819.1\|2934495_2935080_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_AP014821.1\|WP_066115324.1\|2932781_2934047_-\|IS701-family-transposase	unknown	unknown	gnl\|CDD\|379252
NZ_AP014821.1\|WP_082712998.1\|2928083_2928635_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_AP014821.1\|WP_066119823.1\|2938908_2940714_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236018
NZ_AP014821.1\|WP_066121915.1\|2937693_2938119_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_173645718.1\|2938201_2938654_+\|SufE-family-protein	unknown	unknown	gnl\|CDD\|376883
NZ_AP014821.1\|WP_066119831.1\|2943591_2944845_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|222984
NZ_AP014821.1\|WP_066119825.1\|2941201_2942269_-\|photosystem-II-q(b)-protein	unknown	unknown	gnl\|CDD\|130221
NZ_AP014821.1\|WP_082712999.1\|2935154_2935637_+\|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	gnl\|CDD\|274976

Protein	Function_ID	Function_description	E-value
NZ_AP014821.1\|WP_066119808.1\|2927782_2928070_+\|metal-binding-protein	gnl\|CDD\|370734	pfam09876, DUF2103, Predicted metal-binding protein (DUF2103). This domain, found in various putative metal binding prokaryotic proteins, has no known function.	1.22679e-23
NZ_AP014821.1\|WP_066119817.1\|2931801_2932617_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	5.1174e-27
NZ_AP014821.1\|WP_066119835.1\|2945595_2945997_+\|KH-domain-containing-protein	gnl\|CDD\|224750	COG1837, COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only].	1.12114e-16
NZ_AP014821.1\|WP_066119831.1\|2943591_2944845_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|222984	PHA03100, PHA03100, ankyrin repeat protein; Provisional.	5.52793e-29
NZ_AP014821.1\|WP_066119806.1\|2927480_2927786_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|183845	PRK13019, clpS, ATP-dependent Clp protease adapter ClpS.	5.12224e-53
NZ_AP014821.1\|WP_066119833.1\|2945354_2945603_+\|30S-ribosomal-protein-S16	gnl\|CDD\|176950	CHL00005, rps16, ribosomal protein S16.	2.10054e-38
NZ_AP014821.1\|WP_066119827.1\|2942618_2943020_-\|phosphomannose-isomerase-type-II-C-terminal-cupin-domain	gnl\|CDD\|380343	cd02213, cupin_PMI_typeII_C, Phosphomannose isomerase type II, C-terminal cupin domain. This family includes the C-terminal cupin domain of mannose-6-phosphate isomerases (MPIs) which have been classified broadly into two groups, type I and type II, based on domain organization. This family contains type II phosphomannose isomerase (also known as PMI-GDP, phosphomannose isomerase/GDP-D-mannose pyrophosphorylase), a bifunctional enzyme with two domains that catalyze the first and third steps in the GDP-mannose pathway in which fructose 6-phosphate is converted to GDP-D-mannose. The N-terminal domain catalyzes the first and rate-limiting step, the isomerization from D-fructose-6-phosphate to D-mannose-6-phosphate, while the C-terminal cupin domain (represented in this alignment model) converts mannose 1-phosphate to GDP-D-mannose in the final step of the reaction. Although these two domains occur together in one protein in most organisms, they occur as separate proteins in certain cyanobacterial organisms. Also, although type I and type II MPIs have no overall sequence similarity, they share a conserved catalytic motif.	5.88126e-51
NZ_AP014821.1\|WP_066119821.1\|2936212_2937472_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_AP014821.1\|WP_066119829.1\|2943050_2943449_-\|DUF4359-domain-containing-protein	gnl\|CDD\|372990	pfam14271, DUF4359, Domain of unknown function (DUF4359). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length. There are two completely conserved residues (P and S) that may be functionally important.	6.58527e-30
NZ_AP014821.1\|WP_066119815.1\|2931211_2931781_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.20837e-25
NZ_AP014821.1\|WP_066119819.1\|2934495_2935080_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	5.8221e-52
NZ_AP014821.1\|WP_066115324.1\|2932781_2934047_-\|IS701-family-transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.14683e-37
NZ_AP014821.1\|WP_082712998.1\|2928083_2928635_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	6.51913e-14
NZ_AP014821.1\|WP_066119823.1\|2938908_2940714_+\|aspartate-kinase	gnl\|CDD\|236018	PRK07431, PRK07431, aspartate kinase; Provisional.	0
NZ_AP014821.1\|WP_173645718.1\|2938201_2938654_+\|SufE-family-protein	gnl\|CDD\|376883	pfam02657, SufE, Fe-S metabolism associated domain. This family consists of the SufE-related proteins. These have been implicated in Fe-S metabolism and export).	8.69513e-61
NZ_AP014821.1\|WP_066119825.1\|2941201_2942269_-\|photosystem-II-q(b)-protein	gnl\|CDD\|130221	TIGR01151, Photosystem_QB_protein, photosystem II, DI subunit (also called Q(B)). This model describes the Photosystem II, DI subunit (also called Q(B)) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits DI, DII, Cyt.b, Cyt.f and iron-sulphur protein. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis and principal electron donor is H2O. Although no structural data is presently available, a huge body of literature exits that describes function using a variety of biochemical and biophysical techniques. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis].	0
NZ_AP014821.1\|WP_082712999.1\|2935154_2935637_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	5.7309e-50

>NZ_AP014821.1|WP_082712999.1|2935154_2935637_+|CRISPR-associated-endonuclease-Cas1
MGTIYITQDDAFIGKTDERLQVKADKKQLLDVPFIKIDGLVILGRANFSPAIVSELLTRKIPLSFLTSTGKYLGRLEPELTKNIFIRKAQWAVTENSPKAIHVVNGFIRGKLKNYRNLMMLRNRQEYHQKLESSIEQIQQIIKSLDTKNNVNSLRGLEGG
>NZ_AP014821.1|WP_066119819.1|2934495_2935080_+|CRISPR-associated-protein-Cas4
MNDISIAALNHYSYCPHRYWRMFCANEFEDNQYTIEGTNLHERVHTMSNLNLGETWQIRAIWLKSEQYNLIGKADLIEAENGQFYPVEYKRGKKGEWVNDELQVVAQALCLEEMTKTTIDTGYIYYAQTHQRQEVKIDDNLRKDAIVIIKAIQEINHTGKIPKAVYSKKCKGCSLYSACLPIANDKVNRYREEN
>NZ_AP014821.1|WP_066115324.1|2932781_2934047_-|IS701-family-transposase
MKEITSSSMPPCFNRWCEKIDPVLKTKAQKREFRNYLGGLLGDSQRKNITQIAHNNLDITYHKLHHFLTESTWNYDEVNDKRLEIIASCRQTKISRCFSLIIDDSGHRKSGNFTDCVGRQYIGEIGKTDNGNVIVTTHIYDGVRSFPLDVELYEKAENFPEGKDAPQFQKKPDIAFNLIEKCLNRNYCPQIILMDGGYGNNTNLLGKLEKKNLKYIGIIAKNRLVKLVKQDFIESEKTIAEIAKSLPQDSFEKIRIGKNREKTLWVATINIELSALSGIKTVAIVMNADTFENSTDIDYLMTNEIGEKVCGNWIVETYTQRNWIEVFYREIKGWLGLSQYQVRNKRSLMRHFILVFCAYTFIQWHRLTGGLRRQWGNKPLNTFAEALEAFRNAVSFRFFQWLKDNVEVFSLYKASLGFIWA
>NZ_AP014821.1|WP_066119817.1|2931801_2932617_+|CRISPR-associated-endoribonuclease-Cas6
MPHSLVIKFTPLSDIPVGYTSGKHLHALFLNLVNSVDRTLAQYFHDSQANKSFTVSPLQVNNSKNDQKLLQWKQEKNIKKSSSCWWRITLLDDSLFSKLTKLWLNLNPEKPYHLGSGELLITNVFASPNSHNWANAYSYQQIYEEASETERTIKLTLATPTAFRHGKYDVFLPTADLVFSSLLRRWQKYSLIPLNDLNFDFLFPSYFNINTEIIIQENTKFIGCIGDINYKILGELDRATIKGINVLADYGFYAGLGRKTTMGFGILKRLS
>NZ_AP014821.1|WP_066119815.1|2931211_2931781_+|Uma2-family-endonuclease
MQTILKQSLTLLEFLALPNDDYTHELIEGEAVPKMSPKRFHSRVTLALSFLLEEWNQKQENKGEIGIEWAIVLKRKGKDWCPVPDLLYISNERLKQVPFEDVACKIPPELVIEIISPEQSFSNLSEKAVDYLNAGVDRVWIIDSKVKKVTIFYPDSPPQTKSNNDSLTDNFLHNLTLTPQQIFTNSGLL
>NZ_AP014821.1|WP_173645717.1|2930578_2931184_+|hypothetical-protein
MKIIDRTQSYTFSKYFDMKIEVRDLAEEFGYNFSRNELNLPQFQGELNRINDTKERIKEVLPYVSLNSETARREILISPIIFDLIHYTKSEVRIEYSVKVNEQLQSYFDYLIEKEKELLVIEAKKGDLDYGFTQLTAQLIALDQWERMGDQEILIGAITTGNIWQFGRLNRQEKQIQQGLDLYRVPDDLDPLMRILVQALS
>NZ_AP014821.1|WP_066119813.1|2929999_2930554_+|hypothetical-protein
METIAYYDLLHLLKYYDLSWFKSVKEFQETLPNSENIQFADLYCQVKRAKNREDNLIVSFSLESEFNQDIFKKRYCDKQTAIRGLKIQVSNLDSSCVALSPKLTEAIKEQYITCLLVPEQGGTFGEIKGKTRDIQLSCPTVKVIFSNSKIVNYKAILGTNAYLIGAKIQKYLYAIQKKTEYWVC
>NZ_AP014821.1|WP_082712998.1|2928083_2928635_-|WYL-domain-containing-protein
MSNEFEGWRKAIDFHLSEQKPFLLIYENKDKEQEIFNVCYGEIRFHEKRFYLDAWCEEVNPTHEFPELTHNRCFRLDKVKNILKSNSRWRKKGFDFIEVTLNFYGNMIKAYESKLEDITVITEDDRKSDKLVIVRKVSNPFWLIGEVLPYGRNCEIIHPPEVRHKFIKEINIITNMYKDGEAV
>NZ_AP014821.1|WP_066119808.1|2927782_2928070_+|metal-binding-protein
MSKSSDGRIVWNHSTHLDGLIPILEKLVIYDGIKTVTPAVLSRSRSHSPHMKLKVSVPIRGGYKLIARCGKSVQEVFIITTLTQNELESIIAEII
>NZ_AP014821.1|WP_066119806.1|2927480_2927786_+|ATP-dependent-Clp-protease-adapter-ClpS
MTPTVLESTIIAPTKSSQVIRKPYPNFKVIVLNDDFNTFDHVANCLLKYIPNMTQDLAWELTNQVHFDGQALVWSGPLEQAELYHQQLRREGLTMAPLEEA
>NZ_AP014821.1|WP_066119821.1|2936212_2937472_+|phosphoribosylamine--glycine-ligase
MKVLVVGNGGREHALAWKLLQSDTVEKVFCTPGNGGTAVLNNCENVAIAVDDFESILKLIQENSIDLVVVGPELPLSLGITDYLQLYNVSVFGPNREGATIEASKSWAKDLMIEGGIPTAKSATFTDKEEAKNYIYQEGVPIVVKADGLAAGKGVVVAMSEHEALRAIDELFAQNFSKVVVEEFLTGQEVSVLALTDGITIRPLIPAQDHKQIGEGDTGANTGGMGVYAPTPIVNSILNDRITKEVLDPILKALQKRGIDYRGVLYAGLMITPEGIPKTLEFNCRFGDPETQAVLPMLKTSLADVLLACAQQKLSDLPPLEWHEGSAVCVVIAAGGYPGSYEKGKVITGILDAENQGATVFHAGTKLMQNEIITDGGRVLGVTCIAKDFQSAIADTYSAVEKISFEDMYYRRDIGHRIL
>NZ_AP014821.1|WP_066121915.1|2937693_2938119_-|hypothetical-protein
MFNFIFPYKSLLFWSIITTTIILNIIPLNSFAQIPKNQQITGTTGGNNNSGDCGYIGSQPNHVINLNEQVYSLNIVVETNQGKPSLLVLGPGESDRFCILGESSAGKYPKMGGVWAAGKYLIYVGDAQGNKNPFTMKITTK
>NZ_AP014821.1|WP_173645718.1|2938201_2938654_+|SufE-family-protein
MILSNSFTRPQNLDKIVEKFKRRDNPKQKYEQLLWYAKKLAPMAEEAKTPENKVSGCVSQVYITSKLEEDKIFYQGDSDAQLVKGLVAFLIEGLNGLTPAEIIKLTPDFIEETGLQVSLTPSRANGFINIFKKMQQQALAQLTQNNELNT
>NZ_AP014821.1|WP_066119823.1|2938908_2940714_+|aspartate-kinase
MVLIVQKYGGSSVGSTDRIKSVARRIDRTVKEGNQVVVVVSAMGKTTDSLVKLAQEISNNPSRREMDMLLSTGEQVSISLLSMALQEIGHPAISLTGAQVGIVTEANHSKARILEIKPDRINRELKQGKVVVVAGFQGITNLADFEITTLGRGGSDTSAVALAVALQADCCEIYTDVPGILTTDPRIVPSAKLMTEITSDEMLELASLGAKVLHPRAVEIARNFGMPLVVKSSWTDDPGTKVISPPNQGKSLVGLEITKAVDAVEFDADQAKIALLRVADRPGIAAKLFGEIARQNVDVDLIIQSIHEGNSNDIAFTVVKGVLPHAESVAMAIAPILDENGNTDILVEKKIAKIAIAGAGMIGRPGIAAKMFQSLAQAGVNIQMISTSEVKVSCIVDQDDCDRAIASLCNAFDIGSSNISHNQEEDHSNFVPVRGVALDQNQAQLAILFVPDIPGMAAKVFTVLAEENISVDMIIQSQRCRLVNGIPMRDIAFTVAQQDAEHAQTALYKLQSDIKFKEIVVDRNIAKVSIVGSGMIGSPGVAAKFFEALAKESINIYMITTSEIKISCVVAQEQGIQALKAVHTAFSLSGDTTLEVPSKEG
>NZ_AP014821.1|WP_066119825.1|2941201_2942269_-|photosystem-II-q(b)-protein
MTTILRQQRLSSWEQFCQWVTSTNNRLYVGWFGVLMIPALLTATTCFVIAFIAAPPVDIDGIREPISGALLYGNNIITAAVVPSSNAIGLHFYPIWEAVTLDEWLYNGGPYQLIIFHFLIGIYCYMGRQWELSYRLGMRPWICVAYSAPVAAATAVLLVYSIGQGSFSDGLPLGISGTFNFMFVLQAEHNVLMHPFHMIGVAGVFGGALFSAMHGSLVTSSLIRETTETESQSLGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGAWPVIGIWFAALAVCCFAFNLNGFNFNHSILNSDGRVINSWADVINQANIGIEVMHERNVHNFPLDLAFAEPFSAPMING
>NZ_AP014821.1|WP_066119827.1|2942618_2943020_-|phosphomannose-isomerase-type-II-C-terminal-cupin-domain
MGNNLNSNSQELFESEYTRTPPWGTVTLLEDGKNYRIHKITLKPGHHISTQMHYHRSEHWIVVAGTAKVIFNGEERLLMPKQSTYVPMNTRHRVENPGVVPLVMIEVQNGEYLGDDDIIRFPDEDEVGGRIQN
>NZ_AP014821.1|WP_066119829.1|2943050_2943449_-|DUF4359-domain-containing-protein
MNPLPHEHKSPLSITLLIGGGLFLVFGCLLLFTNPSQKKYELFAAEQLVIYAKENVCQATSGNLEEAIKSQVCNLMIDTGKNQIPTLIGKTTQKRNYLLLSIYETNLYLYNFTTIGLLNQFYVIGFEKVYDQ
>NZ_AP014821.1|WP_066119831.1|2943591_2944845_-|ankyrin-repeat-domain-containing-protein
MNHPFSLRSAIIHNDIPQVQKLLTSSLELSYEDKNQGLIYAIQRGYMKIAQLLIGADADVNFQNPPHQMTPLMFACAGNHQSLCELLINHGADVNITNDDETSALMIASYRGYTPIVEMLLKNNAHVNHQDLDGDNSLHLAIKSNHFEVVNLLINSGADVFFDDGALSVAIDQDNIEMVNFLLEKSINVNQSNNDGVTPLMMASAHGNIAIMETLLKAGANVNNQDKAGDSALHLAVLEGHLEIVQILLEKGANPNTINEEGDSPLLIACVQGYTEIVVELLKYGAKVNFHNEQDTPLGLAVVNGWQKIAIHLLNAGANPNTVLADGKTVLMKVCDHNNLELISHLLEAGADVNLEDRGGGTALMWASHRGNFEAVTLLVKVEGIKVNHKNHEGYTAASLAEYNKYPEVAKFLRQLS
>NZ_AP014821.1|WP_066119833.1|2945354_2945603_+|30S-ribosomal-protein-S16
MVKLRLKRLGKKREVSYRIVAMSSRSRRDGEALEELGFYNPRNDETRLNVPAIITRLKQGAQPTETVRSILVKAKVFEQVNA
>NZ_AP014821.1|WP_066119835.1|2945595_2945997_+|KH-domain-containing-protein
MLNSELNSSVNTTFPPDYDGLVRFLIEPLLESPELLSFDCEQISSTKRIWIRLAFEENEKGKVYGRGGRNIQAVRTVLQSAAQLAGDTLYLEIYEDQDRTRVRRSRPPVRQSSAPRPSGDHYSRRPIRRSAMG

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Crispr_ID: NZ_AP014821_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014821_8

2953250-2953335

Unclear

Consensus_repeat	Method
TGCCATTCTAAAGCATATAAACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014821_8

>merge|NZ_AP014821|8|2953250-2953335|CRISPRCasFinder
TGCCATTCTAAAGCATATAAACGATCGTTTTTTTCATTTAATTGTTTAGTTTTATCTTCAAAATGCCATTCTAAGGCATATAAACG

>NZ_AP014821|8|7|2953250-2953335|CRISPRCasFinder
TGCCATTCTAAAGCATATAAACG	ATCGTTTTTTTCATTTAATTGTTTAGTTTTATCTTCAAAA
TGCCATTCTAAGGCATATAAACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014821.1\|WP_066119841.1\|2950110_2950833_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014821.1\|WP_066119856.1\|2960274_2960604_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_AP014821.1\|WP_066119864.1\|2962799_2964383_+\|NAD(P)H-quinone-oxidoreductase-subunit-4	unknown	unknown	gnl\|CDD\|235050
NZ_AP014821.1\|WP_066119853.1\|2957196_2958486_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_AP014821.1\|WP_066119831.1\|2943591_2944845_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|222984
NZ_AP014821.1\|WP_066119860.1\|2961624_2962146_+\|photosystem-I-assembly-protein-Ycf3	unknown	unknown	gnl\|CDD\|179448
NZ_AP014821.1\|WP_066119854.1\|2958804_2960106_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|178100
NZ_AP014821.1\|WP_066119825.1\|2941201_2942269_-\|photosystem-II-q(b)-protein	unknown	unknown	gnl\|CDD\|130221
NZ_AP014821.1\|WP_066119850.1\|2954624_2956280_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NZ_AP014821.1\|WP_066119833.1\|2945354_2945603_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|176950
NZ_AP014821.1\|WP_066119827.1\|2942618_2943020_-\|phosphomannose-isomerase-type-II-C-terminal-cupin-domain	unknown	unknown	gnl\|CDD\|380343
NZ_AP014821.1\|WP_144439443.1\|2948643_2948901_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|366153
NZ_AP014821.1\|WP_066119862.1\|2962201_2962489_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_AP014821.1\|WP_066119845.1\|2951939_2952953_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|180962
NZ_AP014821.1\|WP_066119835.1\|2945595_2945997_+\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|224750
NZ_AP014821.1\|WP_066119858.1\|2960967_2961552_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_AP014821.1\|WP_066119829.1\|2943050_2943449_-\|DUF4359-domain-containing-protein	unknown	unknown	gnl\|CDD\|372990
NZ_AP014821.1\|WP_066119852.1\|2956436_2957105_+\|photosystem-II-biogenesis-protein-Psp29	unknown	unknown	gnl\|CDD\|371440
NZ_AP014821.1\|WP_066119843.1\|2951016_2951676_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP014821.1\|WP_066119865.1\|2964727_2965768_+\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237048

Protein	Function_ID	Function_description	E-value
NZ_AP014821.1\|WP_066119856.1\|2960274_2960604_-\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.07126e-20
NZ_AP014821.1\|WP_066119864.1\|2962799_2964383_+\|NAD(P)H-quinone-oxidoreductase-subunit-4	gnl\|CDD\|235050	PRK02546, PRK02546, NAD(P)H-quinone oxidoreductase subunit 4; Provisional.	0
NZ_AP014821.1\|WP_066119853.1\|2957196_2958486_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_AP014821.1\|WP_066119831.1\|2943591_2944845_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|222984	PHA03100, PHA03100, ankyrin repeat protein; Provisional.	5.52793e-29
NZ_AP014821.1\|WP_066119860.1\|2961624_2962146_+\|photosystem-I-assembly-protein-Ycf3	gnl\|CDD\|179448	PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional.	8.87034e-116
NZ_AP014821.1\|WP_066119854.1\|2958804_2960106_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|178100	PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_AP014821.1\|WP_066119825.1\|2941201_2942269_-\|photosystem-II-q(b)-protein	gnl\|CDD\|130221	TIGR01151, Photosystem_QB_protein, photosystem II, DI subunit (also called Q(B)). This model describes the Photosystem II, DI subunit (also called Q(B)) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits DI, DII, Cyt.b, Cyt.f and iron-sulphur protein. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis and principal electron donor is H2O. Although no structural data is presently available, a huge body of literature exits that describes function using a variety of biochemical and biophysical techniques. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis].	0
NZ_AP014821.1\|WP_066119850.1\|2954624_2956280_-\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	8.05229e-22
NZ_AP014821.1\|WP_066119833.1\|2945354_2945603_+\|30S-ribosomal-protein-S16	gnl\|CDD\|176950	CHL00005, rps16, ribosomal protein S16.	2.10054e-38
NZ_AP014821.1\|WP_066119827.1\|2942618_2943020_-\|phosphomannose-isomerase-type-II-C-terminal-cupin-domain	gnl\|CDD\|380343	cd02213, cupin_PMI_typeII_C, Phosphomannose isomerase type II, C-terminal cupin domain. This family includes the C-terminal cupin domain of mannose-6-phosphate isomerases (MPIs) which have been classified broadly into two groups, type I and type II, based on domain organization. This family contains type II phosphomannose isomerase (also known as PMI-GDP, phosphomannose isomerase/GDP-D-mannose pyrophosphorylase), a bifunctional enzyme with two domains that catalyze the first and third steps in the GDP-mannose pathway in which fructose 6-phosphate is converted to GDP-D-mannose. The N-terminal domain catalyzes the first and rate-limiting step, the isomerization from D-fructose-6-phosphate to D-mannose-6-phosphate, while the C-terminal cupin domain (represented in this alignment model) converts mannose 1-phosphate to GDP-D-mannose in the final step of the reaction. Although these two domains occur together in one protein in most organisms, they occur as separate proteins in certain cyanobacterial organisms. Also, although type I and type II MPIs have no overall sequence similarity, they share a conserved catalytic motif.	5.88126e-51
NZ_AP014821.1\|WP_066119852.1\|2956436_2957105_+\|photosystem-II-biogenesis-protein-Psp29	gnl\|CDD\|371440	pfam11264, ThylakoidFormat, Thylakoid formation protein. THF1 is localized to the outer plastid membrane and the stroma. THF1 has a role in sugar signalling. THF1 is also thought to have a role in chloroplast and leaf development. THF1 has been shown to play a crucial role in vesicle-mediated thylakoid membrane biogenesis.	1.17997e-115
NZ_AP014821.1\|WP_066119862.1\|2962201_2962489_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	1.09014e-33
NZ_AP014821.1\|WP_066119845.1\|2951939_2952953_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|180962	PRK07403, PRK07403, type I glyceraldehyde-3-phosphate dehydrogenase.	0
NZ_AP014821.1\|WP_066119835.1\|2945595_2945997_+\|KH-domain-containing-protein	gnl\|CDD\|224750	COG1837, COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only].	1.12114e-16
NZ_AP014821.1\|WP_066119858.1\|2960967_2961552_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	8.22761e-142
NZ_AP014821.1\|WP_066119829.1\|2943050_2943449_-\|DUF4359-domain-containing-protein	gnl\|CDD\|372990	pfam14271, DUF4359, Domain of unknown function (DUF4359). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length. There are two completely conserved residues (P and S) that may be functionally important.	6.58527e-30
NZ_AP014821.1\|WP_066119843.1\|2951016_2951676_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.96891e-13
NZ_AP014821.1\|WP_144439443.1\|2948643_2948901_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|366153	pfam00534, Glycos_transf_1, Glycosyl transferases group 1. Mutations in this domain of PIGA lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family.	0.00647586
NZ_AP014821.1\|WP_066119865.1\|2964727_2965768_+\|GTPase-ObgE	gnl\|CDD\|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0

>NZ_AP014821.1|WP_066119845.1|2951939_2952953_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MVRVAINGFGRIGRNFLRCWFGRENSGLEVVGINDTSDPKTNAHLLRYDSMLGIFDADIKADENSITVNGKTIKCVSDRNPLNLPWADWGVDLIIESTGVFVTDEGASKHIQAGAKKVLITAPGKGAGVGTYVVGVNDKEYSHDKYNVVSNASCTTNCLAPIAKVLHENFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAAINIVPTSTGAAQAVALVLPELKGKLNGIALRVPTPNVSIVDLVVQVEKSTIAEQVNQVLKEASEGELKGILGYNELPLVSSDYRGTNVSSIVDANLTMVMAGDMVKVVAWYDNEWGYSQRVVDLAEIVASNWK
>NZ_AP014821.1|WP_066119843.1|2951016_2951676_-|TetR/AcrR-family-transcriptional-regulator
MPSQTFFNLPQTKQKIIIEKAIAEFANHSYESASISHIVSEAKIAKGSFYQYFEGKQDLYLYLVDLGIAQQKSFIENANLPKIKDGFFVYLRALFQVSIHFQLTNPELAQILFRGPHHGDIPFREEVFRRTKTVSTTFIKQRIQEAIELNQLPKYLNPDIAAFMIITIATEMRQFIPLHLQLKMNPLIKEGPEINVKTIEQIIDDFVKILEQGIGGRKD
>NZ_AP014821.1|WP_066119841.1|2950110_2950833_-|hypothetical-protein
MFLLKKSSQKIISSSSCLDFPFRNFVFISSCPESWGGSEELWSQTAIYLHQKNHQVKVFKTYIDHKHRKIQQLEELGIDISDIYKLGLKRIPKLIKKLQSYISLPNFFAHKSIVEVINKSNLYTCKIYKSLRIQDYLSLFFLQRSLVSIKPNLVLICQGENFDGFIYICLCKLLGLNYAILSQKASDHIWPSDEILSLLIKGYQNASYSFFVSKHNLKLTQSQLGKLRRIDLVYNLSQKR
>NZ_AP014821.1|WP_144439443.1|2948643_2948901_-|glycosyltransferase-family-4-protein
MVKNPYQGIIPEPLCYPQDDGYFKLACVARLWILDKGQDILLNVLAQDKWRERNLKVSFFGSGNNYDGLVNMAELLQLENVSFLS
>NZ_AP014821.1|WP_066119835.1|2945595_2945997_+|KH-domain-containing-protein
MLNSELNSSVNTTFPPDYDGLVRFLIEPLLESPELLSFDCEQISSTKRIWIRLAFEENEKGKVYGRGGRNIQAVRTVLQSAAQLAGDTLYLEIYEDQDRTRVRRSRPPVRQSSAPRPSGDHYSRRPIRRSAMG
>NZ_AP014821.1|WP_066119833.1|2945354_2945603_+|30S-ribosomal-protein-S16
MVKLRLKRLGKKREVSYRIVAMSSRSRRDGEALEELGFYNPRNDETRLNVPAIITRLKQGAQPTETVRSILVKAKVFEQVNA
>NZ_AP014821.1|WP_066119831.1|2943591_2944845_-|ankyrin-repeat-domain-containing-protein
MNHPFSLRSAIIHNDIPQVQKLLTSSLELSYEDKNQGLIYAIQRGYMKIAQLLIGADADVNFQNPPHQMTPLMFACAGNHQSLCELLINHGADVNITNDDETSALMIASYRGYTPIVEMLLKNNAHVNHQDLDGDNSLHLAIKSNHFEVVNLLINSGADVFFDDGALSVAIDQDNIEMVNFLLEKSINVNQSNNDGVTPLMMASAHGNIAIMETLLKAGANVNNQDKAGDSALHLAVLEGHLEIVQILLEKGANPNTINEEGDSPLLIACVQGYTEIVVELLKYGAKVNFHNEQDTPLGLAVVNGWQKIAIHLLNAGANPNTVLADGKTVLMKVCDHNNLELISHLLEAGADVNLEDRGGGTALMWASHRGNFEAVTLLVKVEGIKVNHKNHEGYTAASLAEYNKYPEVAKFLRQLS
>NZ_AP014821.1|WP_066119829.1|2943050_2943449_-|DUF4359-domain-containing-protein
MNPLPHEHKSPLSITLLIGGGLFLVFGCLLLFTNPSQKKYELFAAEQLVIYAKENVCQATSGNLEEAIKSQVCNLMIDTGKNQIPTLIGKTTQKRNYLLLSIYETNLYLYNFTTIGLLNQFYVIGFEKVYDQ
>NZ_AP014821.1|WP_066119827.1|2942618_2943020_-|phosphomannose-isomerase-type-II-C-terminal-cupin-domain
MGNNLNSNSQELFESEYTRTPPWGTVTLLEDGKNYRIHKITLKPGHHISTQMHYHRSEHWIVVAGTAKVIFNGEERLLMPKQSTYVPMNTRHRVENPGVVPLVMIEVQNGEYLGDDDIIRFPDEDEVGGRIQN
>NZ_AP014821.1|WP_066119825.1|2941201_2942269_-|photosystem-II-q(b)-protein
MTTILRQQRLSSWEQFCQWVTSTNNRLYVGWFGVLMIPALLTATTCFVIAFIAAPPVDIDGIREPISGALLYGNNIITAAVVPSSNAIGLHFYPIWEAVTLDEWLYNGGPYQLIIFHFLIGIYCYMGRQWELSYRLGMRPWICVAYSAPVAAATAVLLVYSIGQGSFSDGLPLGISGTFNFMFVLQAEHNVLMHPFHMIGVAGVFGGALFSAMHGSLVTSSLIRETTETESQSLGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGAWPVIGIWFAALAVCCFAFNLNGFNFNHSILNSDGRVINSWADVINQANIGIEVMHERNVHNFPLDLAFAEPFSAPMING
>NZ_AP014821.1|WP_066119850.1|2954624_2956280_-|glycosyltransferase
MKNILVVSHSDFPMNSAVHVHHFANELIKLGLDCVVAVPLNQNSVSSLKDNLYKVTCYSDIDNLCSYFSNNQPPDIVHCWTPREHIRLYCYHLSQFYEFNLVIHLEDSEESIIERFFKIPIKNWTSENDRILPYNLSHPRKYREFLSTADGVTVIIDKLQEFIPVSIPTITLYPGVDTQEFFPRQKNISLLKELEIPENTTILVYTGIVHPTNLEEVRSLYLAIGKLNLAGKPTVLIRTGVDNNLPLLEDNEVWIKEYIIELGWVERQKIPDILALADVLIQPGKSDDFNDYRFPSKIPEFLAMGKPIILPETNIGKVLTHKENAFILPKVDENSLPSAIDLLMNDLKLAEKLSIEGIKFTHNYLNWQKNTKNLYHFYQTLYSQKKLLSFKKNISKRLEYYQQDLNNNSWNNLQLLLLKESCKKNQINIKYLEEVNQNNALKINNLENEKKYLQQELNNKNNQLISKDENLFDLQNIVQKSSIELQELEQIKNKDIISLQQKLEKSTIELQELEQVNYLLMEEIKAMKSSKFWQIRNKWFIFKRFLGLGNS
>NZ_AP014821.1|WP_066119852.1|2956436_2957105_+|photosystem-II-biogenesis-protein-Psp29
MDKLRTVSDTKRNFYQHHNRPINSIYRRVVEELMVEMHLLSVNVDFRPDPVYYLGVCQSFTQFMNGYTPESDKDSIFKALCKSIGDNPDEYRQKSEILLNFATQKSPQDLINWLLNPTHDNGLESIAEHWRYALDNPKFKYSRLFAIGFYSLLEKSDVEIVKDEEKFAELIKPLTDKLNLPIDKLKKDLDLYRSNLEKISQMLIVLADTLEASKKKRLEKVN
>NZ_AP014821.1|WP_066119853.1|2957196_2958486_+|serine--tRNA-ligase
MLDLKKIRENPHEVLKLLHHRSTDYQLQPILDLDNQQREIQSVRTELQARSNEIGKIIGEKMRSGANPQNEEIVNLKQEGNDVKAKLAELEPKERDLKTKIDALLLELPNLPSVTTPIGENETENIEVRRWGDEFIPDSSHILPHGEIGEKLGIIDSERAVKVAQSRFVALVGMGAALERALINFMLDRQIEAGYTEVMPPILVNSEALQGTGQLPKFAEESFKCDNDDLWLTPTAEVPVTNFYRQEILDADQLPIHHCAYTPCFRREAGSYGRDMKGLIRLHQFNKVELIKLVRPETSEQEHEKMVNNAEAILQALKLPYRVVELCTGDLGFGAAKCYDLEVWLPSANTYREISSCSNCHDFQARRADIRFKEKGKKGTEYVHTLNGSGLAVGRTMAAILENYQQEDGTVKVPEALQPYLKIDVLSVR
>NZ_AP014821.1|WP_066119854.1|2958804_2960106_+|glutamate-1-semialdehyde-2,1-aminomutase
MVNTLAFKTTKSEEIFTAAQKLMPGGVNSPVRAFKSVGGQPIVFDRVKGAYIWDVDENKYIDYVGSWGPAICGHTHPDVINALKEVLEKGTSFGAPCLLENILAEMVIEAVPSIEMVRFVNSGTEACLSVLRLMRAYTNRNKIIKFEGCYHGHGDMFLVQAGSGVATLGLPDSPGVPKSVTADTLTAPYNDLEAVKKIFAENPGEIAGVILEPVVGNSGFIPPDAGFLEGLRVLTQENDALLVFDEVMTGFRISYGGVQAKFGVTPDLTTLGKVIGGGLPVGAYGGKKEIMALVAPSGSMYQAGTLSGNPLAMTAGIKTLELLQKPGTYEYLEKITNQLITGLLDIARNAGHEVTGGNISGMFGMFFTGNPVHNYGDAKHSDTAKFGRFHRGMLERGIYLAPSQFEAGFTSIAHTEDDIQQTLVAAEEVLKNI
>NZ_AP014821.1|WP_066119856.1|2960274_2960604_-|STAS-domain-containing-protein
MYNQEVYSPQGTINESNQKKFQQQLLSFINNTKNRDILVDFQQVEFVDGSGLVALVNAYNEAKNQSKNFYLFNVSPSVKMIFEISQLDKVLGIREFNYDRITDNDPLAA
>NZ_AP014821.1|WP_066119858.1|2960967_2961552_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MVPTVIETSGRGERAFDIYSRLLRERIVFLGQQVTDELANSIVAQLLLLEAEDSEKDIYLYINSPGGSVSAGLGIFDTMNQVKPDVCTICVGLAASMGAFLLSAGAKGKRMSLPNSRIMIHQPLGGAQGQATDIEIQAKEILYLKKQLNHYMASHTGQPLEKIEDDTERDFFMSAEEARDYGLIDQVVIRAPKS
>NZ_AP014821.1|WP_066119860.1|2961624_2962146_+|photosystem-I-assembly-protein-Ycf3
MPRSQRNDNFIDKTFTVMADIILKVLPIDAKSKEAFVYYRDGMSAQAEGEYAEALENYQEALKLEEDSNDRSEILYNMGLIHASNGKLEEALEYYHQSLDLNPRKPSVLNNIAVIYHHQGEKCRQAGEEDEAESFYDKAAEYWKQAIRISPNSYLEAQNWLKTTGRSEMDVFF
>NZ_AP014821.1|WP_066119862.1|2962201_2962489_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MSLSKEEVKKVANLARLQITTAEEEEFAPQLNAILDYFEQLKELDTENVQPTTRAIELSNITREDKQTTYEDRESLLNCAPEREEDFFRVPKIMA
>NZ_AP014821.1|WP_066119864.1|2962799_2964383_+|NAD(P)H-quinone-oxidoreductase-subunit-4
MDLTNFPWLTTIILFPIIASLFVFIIPDKDGKTVRWYALTIALMDFVLIVYAFYQGYDFNNPDLQLVESYTWVADLDLKWSVGADGLSMPLILLTGFITTLAILAAWPVSLKPKFFYFLMLAMYGGQIAVFAVQDMLLFFLVWELELVPVYLILSIWGGKRRLYAATKFILYTAGGSLFILVAALTMAFYGDTVTFDMVAIAHKDFGLNLQLLLYGGLLIAYGVKLPIFPLHTWLPDAHGEATAPAHMLLAGILLKMGGYALIRMNAGMLPDAHATFAPILIILGVVNIIYAAFTSFAQRNLKRKIAYSSISHMGFVLIGIASFTDIGMSGAMLQMISHGLIGASLFFMVGATYDRTHTLMLDEMGGIGKRMKKIFAMWTTCSMASLALPGMSGFVAELMVFIGFATSDAYGFTFKLIMVSLAAVGVILTPIYLLSMLREILYGEENKELVSHTKLVDAEPREVFIIACLLIPIIGIGLYPKIVTQIYDSTTQKLTTLLRNSVPSLQVETIAKNNAQFVALNAPKIS
>NZ_AP014821.1|WP_066119865.1|2964727_2965768_+|GTPase-ObgE
MQFIDQVEIEVEAGKGGDGLVAFRREKYVPAGGPSGGNGGRGASILFKPTERLQTLLDFRYARRFKADDGKRGGPNNRTGASGQDLILEIPCGTMIYDADTDELIADLVSPDETFLIAKGGKGGLGNQHFLSNSNRAPEYALPGLEGEIKNLRLELKLLAEVGIIGLPNAGKSTLISALSSAKPKIADYPFTTLIPNLGVVRKPTGDGTVFADIPGLIEGASEGIGLGHDFLRHIERTRLLVHLIDVNSEDPVHDYNVIQGELSAYGKGLHDRPQIIGLNKIDTIDEEMQQEILSQFQGLTNNQIFLISGVTGLGCDRLLQEVWQTLDLMKEESTIETNFLETLKA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

869263 : 938432

Streptococcus_phage(20.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066115324.1\|869263_870529_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_066116431.1\|870853_872581_+	flavin reductase	NA	NA	NA	NA
WP_082712913.1\|872842_873682_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_066116433.1\|873815_875201_-	flavin monoamine oxidase family protein	T2AWI2	Cannes_8_virus	3.6e-06	35.7
WP_066116435.1\|875515_888790_-	hypothetical protein	A0A2L0UZ53	Agrobacterium_phage	4.3e-16	25.8
WP_066116437.1\|889421_891146_+	carbamoyltransferase	A0A1B1IVF2	uncultured_Mediterranean_phage	1.8e-55	35.2
WP_066116439.1\|891275_891704_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_066121704.1\|892035_892389_+	hypothetical protein	NA	NA	NA	NA
WP_071828008.1\|892465_892675_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_066116441.1\|892703_893549_+	diaminopimelate epimerase	NA	NA	NA	NA
WP_066116442.1\|894090_894432_+	DUF1830 domain-containing protein	NA	NA	NA	NA
WP_066116444.1\|894836_895589_+	metal ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.0e-12	30.7
WP_066116446.1\|895681_896551_+	metal ABC transporter permease	NA	NA	NA	NA
WP_066116448.1\|896848_898501_+	acetolactate synthase large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	3.1e-49	26.9
WP_066116450.1\|898686_899523_-	hypothetical protein	NA	NA	NA	NA
WP_066116452.1\|899748_902754_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_066116454.1\|903173_903890_-	DUF1698 domain-containing protein	NA	NA	NA	NA
WP_066116456.1\|904072_905881_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.4e-28	26.0
WP_066116457.1\|905931_907359_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_066116459.1\|907445_908660_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_066116461.1\|908662_909394_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_066116462.1\|909437_910106_+	hypothetical protein	NA	NA	NA	NA
WP_066116464.1\|910095_911523_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_066116466.1\|911587_912451_-	glycosyltransferase	NA	NA	NA	NA
WP_066116468.1\|912645_913995_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	E4ZFI6	Streptococcus_phage	3.9e-74	35.1
WP_066116470.1\|914468_916304_+	hypothetical protein	NA	NA	NA	NA
WP_066116472.1\|916387_917455_+	hypothetical protein	NA	NA	NA	NA
WP_066116475.1\|917477_918368_+	lipoyl synthase	NA	NA	NA	NA
WP_066116477.1\|918462_919863_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
WP_066116481.1\|920132_920576_+	OstA family protein	NA	NA	NA	NA
WP_066116483.1\|920663_921392_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-19	28.4
WP_066116486.1\|921397_922555_+	YjgP/YjgQ family permease	NA	NA	NA	NA
WP_066116488.1\|922569_923385_-	acyltransferase family protein	NA	NA	NA	NA
WP_066116490.1\|923545_924160_-	hypothetical protein	NA	NA	NA	NA
WP_071828009.1\|924632_925631_+	RNA polymerase sigma factor, RpoD/SigA family	F4YCU2	Synechococcus_phage	1.7e-42	35.0
WP_066116492.1\|925701_925902_-	hypothetical protein	NA	NA	NA	NA
WP_066116494.1\|925972_926371_+	universal stress protein	NA	NA	NA	NA
WP_066116496.1\|926367_926697_-	DUF3082 domain-containing protein	NA	NA	NA	NA
WP_066116498.1\|926753_927530_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_066116502.1\|927732_928197_-	phosphoribosyltransferase	NA	NA	NA	NA
WP_066116504.1\|928210_928855_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_066116508.1\|928927_929824_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_066116510.1\|930014_930437_-	YraN family protein	NA	NA	NA	NA
WP_066121708.1\|930491_932027_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_066116512.1\|932312_933797_+	polyphosphate:AMP phosphotransferase	NA	NA	NA	NA
WP_066116514.1\|933814_934426_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	C7F482	Cyanophage	1.2e-06	28.7
WP_066116517.1\|934540_935149_+\|transposase	IS66 family transposase zinc-finger binding domain-containing protein	NA	NA	NA	NA
WP_173645738.1\|935394_935877_+\|transposase	transposase	NA	NA	NA	NA
WP_173645739.1\|935807_936554_+\|transposase	transposase	NA	NA	NA	NA
WP_066116520.1\|936632_936971_-	hypothetical protein	NA	NA	NA	NA
WP_066116522.1\|937050_937368_-	hypothetical protein	NA	NA	NA	NA
WP_144439385.1\|937480_938432_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1526271 : 1566632

uncultured_Mediterranean_phage(28.57%)

transposase,integrase

attL 1525568:1525590|attR 1556547:1556569

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1525568:1525590	attL	NA	NA	NA	NA
WP_066117494.1\|1526271_1527270_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_144439414.1\|1527262_1528660_+\|transposase	Mu transposase C-terminal domain-containing protein	NA	NA	NA	NA
WP_066117500.1\|1529278_1529794_-	hypothetical protein	NA	NA	NA	NA
WP_066117502.1\|1529812_1532722_-	hypothetical protein	H6U5K1	Mycobacterium_phage	7.5e-14	27.8
WP_066117505.1\|1532795_1532990_-	hypothetical protein	NA	NA	NA	NA
WP_066115324.1\|1533537_1534803_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_066117507.1\|1534782_1536735_-	hypothetical protein	NA	NA	NA	NA
WP_066117510.1\|1536923_1537481_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_066117512.1\|1537521_1538547_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	7.0e-07	26.5
WP_066121787.1\|1538718_1539132_-	type II toxin-antitoxin system death-on-curing family toxin	D0R0D2	Streptococcus_phage	4.9e-12	36.1
WP_158506705.1\|1539131_1539305_-	hypothetical protein	NA	NA	NA	NA
WP_066117514.1\|1539584_1540373_-	hypothetical protein	NA	NA	NA	NA
WP_066117517.1\|1542109_1542988_+	hypothetical protein	NA	NA	NA	NA
WP_066117523.1\|1542977_1543328_+	hypothetical protein	NA	NA	NA	NA
WP_082712913.1\|1543390_1544230_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_066117526.1\|1544456_1547072_+	class I SAM-dependent DNA methyltransferase	A0A1B1IUC6	uncultured_Mediterranean_phage	3.8e-09	26.6
WP_066117529.1\|1547131_1548454_-	restriction endonuclease subunit S	K7XYU9	uncultured_Mediterranean_phage	1.7e-26	41.2
WP_071828007.1\|1548426_1548603_-	hypothetical protein	NA	NA	NA	NA
WP_158506699.1\|1549798_1549948_-	hypothetical protein	NA	NA	NA	NA
WP_066116328.1\|1550060_1550279_-	hypothetical protein	NA	NA	NA	NA
WP_066117535.1\|1550632_1550971_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_066117538.1\|1550967_1553340_-	DEAD/DEAH box helicase family protein	A0A0K1LKN7	Rhodobacter_phage	1.1e-10	22.9
WP_066117541.1\|1553336_1553810_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_071828023.1\|1553901_1555725_+	hypothetical protein	NA	NA	NA	NA
WP_066117546.1\|1556829_1557462_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
1556547:1556569	attR	NA	NA	NA	NA
WP_066117548.1\|1557544_1558090_+	HAD family hydrolase	NA	NA	NA	NA
WP_066117550.1\|1558274_1559204_+	serine hydrolase	NA	NA	NA	NA
WP_066117552.1\|1559422_1560487_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_144439415.1\|1560691_1560862_+	ssl1498 family light-harvesting-like protein	NA	NA	NA	NA
WP_066117555.1\|1561198_1562266_-	photosystem II q(b) protein	A0A1D8KNW7	Synechococcus_phage	2.3e-186	89.8
WP_066121789.1\|1562509_1563202_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_066117558.1\|1563310_1564804_-	diguanylate cyclase	NA	NA	NA	NA
WP_066117561.1\|1565010_1565658_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_082712913.1\|1565792_1566632_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2595573 : 2633570

Planktothrix_phage(20.0%)

tRNA,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066119157.1\|2595573_2596929_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_173645748.1\|2601429_2602050_+	calcium-binding protein	NA	NA	NA	NA
WP_066119162.1\|2602174_2602540_+	NAD(P)H-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_144439428.1\|2602608_2603547_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_066119165.1\|2603665_2605366_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	5.2e-15	24.1
WP_066119168.1\|2605889_2607008_-	SpoIID/LytB domain-containing protein	Q2XU88	Pseudomonas_phage	2.4e-21	32.1
WP_082712913.1\|2607860_2608700_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_066119171.1\|2608795_2609737_+	hypothetical protein	NA	NA	NA	NA
WP_082712983.1\|2609862_2611902_-	magnesium chelatase ATPase subunit D	NA	NA	NA	NA
WP_066119176.1\|2612016_2612505_-	hypothetical protein	NA	NA	NA	NA
WP_066119178.1\|2612513_2612831_-	hypothetical protein	NA	NA	NA	NA
WP_066119182.1\|2612836_2613280_-	hypothetical protein	NA	NA	NA	NA
WP_158506718.1\|2613451_2613607_-	hypothetical protein	NA	NA	NA	NA
WP_066119185.1\|2613692_2616341_-\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	2.7e-66	35.5
WP_066119187.1\|2616472_2617300_+	hypothetical protein	NA	NA	NA	NA
WP_066119190.1\|2617589_2617796_+	type II toxin-antitoxin system HicB family antitoxin	G9BWD3	Planktothrix_phage	2.8e-08	47.3
WP_173645713.1\|2617962_2618589_+	ApaLI family restriction endonuclease	NA	NA	NA	NA
WP_066119194.1\|2618592_2619798_+	site-specific DNA-methyltransferase	A0A0H3UZ66	Geobacillus_virus	1.9e-43	36.9
WP_066119197.1\|2619809_2620013_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_066119200.1\|2620005_2620239_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_066119202.1\|2620532_2620748_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_066119205.1\|2620750_2620972_+	type II toxin-antitoxin system HicB family antitoxin	G9BWD3	Planktothrix_phage	3.2e-10	46.2
WP_066119207.1\|2621292_2624223_-	cellulase family glycosylhydrolase	G0YQI7	Erwinia_phage	1.1e-76	35.4
WP_158506720.1\|2626606_2626777_-	hypothetical protein	NA	NA	NA	NA
WP_066119210.1\|2626777_2627773_-	hypothetical protein	R9U464	Rhizobium_phage	2.0e-43	31.6
WP_066119213.1\|2627760_2627970_-\|tail	tail protein X	NA	NA	NA	NA
WP_066119217.1\|2627975_2628422_-\|tail	phage tail protein	NA	NA	NA	NA
WP_066119220.1\|2628475_2630716_-\|tail	phage tail tape measure protein	A7YG97	Campylobacter_phage	8.6e-26	28.6
WP_066119223.1\|2630846_2631365_-	hypothetical protein	NA	NA	NA	NA
WP_066119226.1\|2631364_2631862_-\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_066119229.1\|2631866_2633570_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	1.2e-91	38.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_AP014829

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP014829_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014829_1

5226-5412

Orphan

Consensus_repeat	Method
AACAGAACCAGTTTTGACAGAATTGTCACAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_AP014829_1

>merge|NZ_AP014829|1|5226-5412|CRISPRCasFinder
AAAAAAAGAGAAATTGACAGAATTGTCACAAACTCAAAAGCCCACTTTATCAAGTGAAAATTCCACAGCTTCCGATTCAACAGAACCAGTTTTGACAGAATTGTCACAAGCTGAAAACGAGATTTTAGTTGAACAAACGAATCAAAATTTTGACGAAACAGAACCAGTTTTGACAGAATTGTCACAA

>NZ_AP014829|1|1|5226-5412|CRISPRCasFinder
AAAAAAAGAGAAATTGACAGAATTGTCACAA	ACTCAAAAGCCCACTTTATCAAGTGAAAATTCCACAGCTTCCGATTC
AACAGAACCAGTTTTGACAGAATTGTCACAA	GCTGAAAACGAGATTTTAGTTGAACAAACGAATCAAAATTTTGACGA
AACAGAACCAGTTTTGACAGAATTGTCACAA

Protein	Function_ID	Function_description	E-value
NZ_AP014829.1\|WP_066122656.1\|147_1182_-\|protein-rep	gnl\|CDD\|366647	pfam01446, Rep_1, Replication protein. Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase.	4.97854e-45
NZ_AP014829.1\|WP_066122678.1\|8736_9426_-\|NgoBV-family-restriction-endonuclease	gnl\|CDD\|286628	pfam09564, RE_NgoBV, NgoBV restriction endonuclease. This family includes the NgoBV (recognizes GGNNCC but cleavage site is unknown) restriction endonuclease.	1.09995e-43
NZ_AP014829.1\|WP_066115324.1\|9648_10914_+\|IS701-family-transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.14683e-37
NZ_AP014829.1\|WP_066122675.1\|7415_8762_+\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|273211	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	9.36212e-106

>NZ_AP014829.1|WP_066122664.1|3383_4304_-|hypothetical-protein
MAEGYIFELSLLENGLDFIARGIDELYILYDDIEYQQYIYPISEPQKDYKYGVLHLFSGFLLLLKERLSRHMPELIYDGKIEDIKKKLKNNKELNTVNLDEALNRLEMGPKVTFSEADIKIIRKVQHYRNCFEHYKFSANKFEINKVIIDFINLIDKFLIDQLEIDITSASFNINPEIKVKILSIESIYRRMIEKREQELLAIGAEKLRKFKRNKKNILQELKTESYIAYKEEGIINVMIECPTCGEDTLIIYGDFTGICFNKTCNSYFLTKNCDRCGKVIIGYEWEEKWCDDCHNEIQRMADNDD
>NZ_AP014829.1|WP_066122659.1|2006_2444_-|replication/maintenance-protein-RepL
MPNIILKKLFNEDGTLHSTSQIISNKKQVTFKKWGVINLMTELFAILETGENLTKTCYQVLFYCIKILDYENRVVLNKSKCAKEIKVSPRLVYESVSTLIKQGFLIPSKEKIGNIQVYHFNPTMIYVGEGKKQSEITSNILMGEF
>NZ_AP014829.1|WP_066122656.1|147_1182_-|protein-rep
MSEQYLFTDNDLDLTLDDLSRRDYRFRKWKTATIKIADELQKSGYDDKATILSGCASQLIFKQQEKSLKLLKTHFCKHRICPLCAWRKRLVWLQKLHISLNTIQNLYKEKRLKFKLIFLTLSQKNCRIDDLNKEINKMSKAWDRFVDDNLAKTPFYPKIFPSDGYFRALEVTNKLINYEVWCNVHYHVLIVAPQDYAKNKFVTHPEWVKAWRKAMQLDYDPTAHVKFIKFGQQSEVLKYLVKPLNYDLWIEETLRMYKDELHTIPNRTSHYHSLLFGMIQQLKHCRQFSTSGLIRRYMPRSSPEEHEDYINIKKLQIAEGGKKDGLPNLKFVWNDNNYYLNTFW
>NZ_AP014829.1|WP_066122670.1|6306_6912_+|hypothetical-protein
MNCKKDNTEGKKILQQNCKPEKQDSSDRSSLKDLVDEYRKKYENSYKLENAWWGNKKLTWEEAIKRAWESKLPDGKMHSHQYHVAKYLPDGLEIALADSKKPKDFKDFESLHNWVKSIVDRVHGLGPVTAYDVAQRLGLRLELEPSMVYLHAGTREGAKKLGIDGDVVLLSDFPKEIQSLVATHAENFLCLYKNCLTPNMK
>NZ_AP014829.1|WP_066122672.1|7011_7419_+|hypothetical-protein
MGGMRRIGKGIMGSGRGGAREGAGKKSSWISGCSYEDTKLVRVPKAIGDEVIKIAHDIDAGIDYPTAVKALIEENKMLRKKLLETNQQSSFDSKDLDDLVKEALKKFIKAGTQSTKYKEAKSAINYIINKIILNK
>NZ_AP014829.1|WP_066122675.1|7415_8762_+|DNA-(cytosine-5-)-methyltransferase
MNKSNLTNIRFIDLFAGIGGMRIGLENACQKMNIHSQCVLTSEIKPHAIETYTSNFENSKISGDITQIDTNKIPDFDILLAGFPCQPFSSAGNRLGFLDTRGTLFFEIERVLKEKNPIGFILENVEGLVKHKKGETLKTIIYKLESLGYKVTWKVLDSLDFGIPQSRKRIYIVGNKYKSIDLCFSQFPHDNLISILEQGKQTLDTEFTRLLLKHFSVNELSGKAIKDKRGGSDNIHSWDIELKGSISKKQKELLNLLLKQRRRKIWSEKKGITWMDGIPLTIDDIYTFYPDSNLENMLKDLVHKRYLKYEHPKDLVQVINKDGQKITKREYRKDLPKGYNIVVGKLSFEINKILDSYDVAPTLVATDMHKLAVIDGEGIRNLTIRECLRLFGFPENYIIKQPINKAYDLLGNTVAVPVIEKICDKIVSIILTHSLAQSLSFTKAVQCV
>NZ_AP014829.1|WP_066122678.1|8736_9426_-|NgoBV-family-restriction-endonuclease
MYCNANQIYKKLINAGIKTSTGKITIEYLGIKADLDSKDAVGHLLQEWLKEWCKTNQIYAIPNRNTQKSPDFFLNPNSNKSDLLEVKSFNYDKDPAFDVADFESYWKSLETKAYILDTDYLIFGYRLSNYTLEVKDLWLKKIWEITSSSSKYPVKCQCSNSNQTIKKIRPIKWHKKLNSRSTLPFPSRRDFVYALHQTLLTYKKGNNSQIVNWFQTVENNYLKHTGQLL
>NZ_AP014829.1|WP_066115324.1|9648_10914_+|IS701-family-transposase
MKEITSSSMPPCFNRWCEKIDPVLKTKAQKREFRNYLGGLLGDSQRKNITQIAHNNLDITYHKLHHFLTESTWNYDEVNDKRLEIIASCRQTKISRCFSLIIDDSGHRKSGNFTDCVGRQYIGEIGKTDNGNVIVTTHIYDGVRSFPLDVELYEKAENFPEGKDAPQFQKKPDIAFNLIEKCLNRNYCPQIILMDGGYGNNTNLLGKLEKKNLKYIGIIAKNRLVKLVKQDFIESEKTIAEIAKSLPQDSFEKIRIGKNREKTLWVATINIELSALSGIKTVAIVMNADTFENSTDIDYLMTNEIGEKVCGNWIVETYTQRNWIEVFYREIKGWLGLSQYQVRNKRSLMRHFILVFCAYTFIQWHRLTGGLRRQWGNKPLNTFAEALEAFRNAVSFRFFQWLKDNVEVFSLYKASLGFIWA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP014829_1	1.1\|5257\|47\|NZ_AP014829\|CRISPRCasFinder	5257-5303	47	NZ_AP014829	Geminocystis sp. NIES-3709 plasmid pGM3709_08, complete sequence	5257-5303	0	1.0
NZ_AP014829_1	1.2\|5335\|47\|NZ_AP014829\|CRISPRCasFinder	5335-5381	47	NZ_AP014829	Geminocystis sp. NIES-3709 plasmid pGM3709_08, complete sequence	5335-5381	0	1.0

1. spacer 1.1|5257|47|NZ_AP014829|CRISPRCasFinder matches to NZ_AP014829 (Geminocystis sp. NIES-3709 plasmid pGM3709_08, complete sequence) position: , mismatch: 0, identity: 1.0

actcaaaagcccactttatcaagtgaaaattccacagcttccgattc	CRISPR spacer
actcaaaagcccactttatcaagtgaaaattccacagcttccgattc	Protospacer
***********************************************

2. spacer 1.2|5335|47|NZ_AP014829|CRISPRCasFinder matches to NZ_AP014829 (Geminocystis sp. NIES-3709 plasmid pGM3709_08, complete sequence) position: , mismatch: 0, identity: 1.0

gctgaaaacgagattttagttgaacaaacgaatcaaaattttgacga	CRISPR spacer
gctgaaaacgagattttagttgaacaaacgaatcaaaattttgacga	Protospacer
***********************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_AP014824

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP014824_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014824_1

5292-5397

Orphan

Consensus_repeat	Method
TCTCTACTCCCTGCTTCCCACTCTCTAA	CRISPRCasFinder

1 spacers

RT,WYL

The CRISPR arrays of NZ_AP014824_1

>merge|NZ_AP014824|1|5292-5397|CRISPRCasFinder
TCTCTACTCCCTGCTTCCCACTCTCTAACTGTTCGGAGCTTCCAAATCCGAGTTCTCTAGTCTCTGACTGTTCTTTATTCTCTACTCCCTGCTTCCCACTCTCTAA

>NZ_AP014824|1|1|5292-5397|CRISPRCasFinder
TCTCTACTCCCTGCTTCCCACTCTCTAA	CTGTTCGGAGCTTCCAAATCCGAGTTCTCTAGTCTCTGACTGTTCTTTAT
TCTCTACTCCCTGCTTCCCACTCTCTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014824.1\|WP_066122168.1\|9488_11540_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|226986
NZ_AP014824.1\|WP_066122179.1\|13470_14304_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014824.1\|WP_066122176.1\|12137_12524_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350220
NZ_AP014824.1\|WP_066122156.1\|74_4079_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NZ_AP014824.1\|WP_066122171.1\|11543_11909_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_AP014824.1\|WP_066122239.1\|12520_12751_-\|DUF2281-domain-containing-protein	unknown	unknown	gnl\|CDD\|378366
NZ_AP014824.1\|WP_144439494.1\|11898_12129_-\|DUF2281-domain-containing-protein	unknown	unknown	gnl\|CDD\|378366
NZ_AP014824.1\|WP_066122166.1\|8673_9462_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014824.1\|WP_066122162.1\|7499_8633_+\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|239569
NZ_AP014824.1\|WP_066122243.1\|12922_13147_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014824.1\|WP_066122182.1\|14358_14700_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|199908

Protein	Function_ID	Function_description	E-value
NZ_AP014824.1\|WP_066122168.1\|9488_11540_+\|WYL-domain-containing-protein	gnl\|CDD\|226986	COG4639, COG4639, Predicted kinase [General function prediction only].	1.09729e-20
NZ_AP014824.1\|WP_066122176.1\|12137_12524_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350220	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Synechocystis sp. (strain PCC 6803) Sll0205 protein and other uncharacterized homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.7124e-48
NZ_AP014824.1\|WP_066122156.1\|74_4079_+\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.10603e-10
NZ_AP014824.1\|WP_066122171.1\|11543_11909_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	1.17248e-07
NZ_AP014824.1\|WP_066122239.1\|12520_12751_-\|DUF2281-domain-containing-protein	gnl\|CDD\|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	1.44153e-14
NZ_AP014824.1\|WP_144439494.1\|11898_12129_-\|DUF2281-domain-containing-protein	gnl\|CDD\|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	2.68765e-07
NZ_AP014824.1\|WP_066122162.1\|7499_8633_+\|RNA-directed-DNA-polymerase	gnl\|CDD\|239569	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	1.29535e-82
NZ_AP014824.1\|WP_066122182.1\|14358_14700_+\|hypothetical-protein	gnl\|CDD\|199908	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40. Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding.	0.000237949

>NZ_AP014824.1|WP_066122156.1|74_4079_+|calcium-binding-protein
MTKLNQALVKAQTLLLETILSPNLEENLLLAFGNNVDQNTVNNLVESWRNNDFSQLPPIKILSPIEMKGARGAYSATNNTIYLSSFLLQQESISAIVEVLSEEYGHFIDAQINTTDSQGDEGEIWKNLVLNKSMDEQNLKALKAENDFATLEVDGQILQVETATFTVGTFSDLRNAIISSQSNGVDDVINLSGNIRLTSQLPFINENKGLTINGNGFNISGDANNNGVNDAGDVNLFFIKSGNVTFNNIILTGGRAQGTDGSGGGAGMGGALFIYSGTVTLNNSTVTNNRAIGGNGGFGGGGGGMRLDAIRNTANDGVDGVYRGYGGDGGDGGDGGYGGDGGDGGDGGYTGYGGDGGDGGFGGDGGDGGDGGDSLIYFGGDGGDGGDGGFGGGGGDGGFGGGGGDGGDGGFGGGGGQYGGGDGDGGDGGFGGGGGQYGGFYGGGGAGLGGGIFIRSGSLRVSNTTMSNNSSVGGSDIENRSGKGLGGAIFAMKSTTTTNGNNQGMPTTLPDVVLENVQFSGNTANDDANLGVIELAIYSGTEFDNNDIFGNRFSGYGVPDADTHLSSVTTTLPNNLLNLVLTGMGNINGTGNTLNNVIIGNIGNNNLNGSNGNDTLIGGIGNDSMIGGTGNDTYYVDATGDRVIENVSEGNDTVRSTITYTLGANVENLVLEGATNINGTGNTLNNNITGNNLDNLLNGGTGNDTLNGRGGNDTLTGGIGNDSMIGGTGNDTFYVDATGDRVVENTSEGTDTVRSTITYTLGANVENLVLEGTGNINGTGNTLNNSITGNNLNNIISGGTGNDTLNGRGGNDTLTGGIGNDSMIGGTGNDTFYVDATGDRVAENVNEGTDTVRSTITYTLGANVENLVLEGATNINGTGNTLNNNITGNNLDNLLNGGTGNDTLNGRGGNDTLTGGIGNDSMIGGTGNDTFYVDATGDRVAENTNEGTDRVRSIITYTLEENVENLILEGTANIDGTGNTLNNSLTGNNLNNILNGGEGNDTLVGGNGNDRLNGSTGIDRMQGGLDNDAYSVDNIEDEVIEFFYQGTDIIFSTITYTLPNNVENLSLSDTVNTDINGTGNSLSNRVTGNNRNNILNGGEGNDTLNGSGGNDTLIGGSDSLIGGTGNDSMTGGTGNDSYYVDGTGDRVIENVSEGNDTVRSTIAYTLGANVEYLILGGTGNINGTGNTLRNNITGNNLDNHLTGGEGNDTLSGRGGNDTLTGGLGNDSLIGGTGDDSFRFTSVNEGIDRLSDFNVSDDTILVRRNGFSGGLSLGTLPVNQFRVGSSATTSSQRFIYNSSNGAFFFDIDGNGATAALQIAKLNTGLAMISADISIV
>NZ_AP014824.1|WP_066122162.1|7499_8633_+|RNA-directed-DNA-polymerase
MTANLPQWQLIFPHLQNQNPLLLKDSPEELKQKFYQLKTPLDVAKLLNIPHKRLVYHLYLVNPQRRYKTFTIPKKSGGERQISTPITALKIIQQKLNQVLQAVYQVKPSVHGFVLEKNIITNAKAHVKKRYVLNLDLEDFFPSVNFGRVRGMFMGIPYHLPPDVATVLAQICCHNNQLPQGAPTSPIVTNMICGKMDSQLQRLAKDCKATYTRYADDITFSTTLKDFPVDLAYVVNDGETDEVVLDNLGEFHLGDRLFSIIRENGFSVNEKKTRLQTKGNHQEVTGLTTNQFPNVDRRYVRQVRAMLHAWAKFGLESAHKEFEEKYYHSARFSGKETPRFQDVLKGKIEFIGMVKGKDDRIYRKYIDQYYQLLKIYF
>NZ_AP014824.1|WP_066122166.1|8673_9462_+|hypothetical-protein
MDENVELILEALKELKKHLKCSDNDKYNSLEFVKAKSIREIENILIIFYLEDLEDQSLKFEQYHINHDSFLNYHQLLRTQLEADNLRMIIARYRNDFMDFCRFAWLQIEPIIDFLIQTNYRYNNDLFQNAYVVVSNNISDNSTRENFIRIINQNDMTKVWMQQKIELSLIIISNNSDNIYQDRLNEERKNYLLLLSIYKLRNIASHREEGKTIIQRIENINYNVVKNKVSELYNLKPYLSIKKTIHWFICRCNQWIPPQARR
>NZ_AP014824.1|WP_066122168.1|9488_11540_+|WYL-domain-containing-protein
MSIISHILIGCPSSGKSTLANHIIKQDSNYQIISTDKVREKLFGDENIQGDWQLIEAEIFKQIESHINTGKPIIYDATNAKRWWRISLLKQLAKYHNINWIGWYLKTPLNVCQQWNKRRSRQVPDDVIIAMNQSLRNFPPLPAEGFLAVYDIPFRDGKLEVNQFNNKLTKLNRVQVNRHNRTANSKVKFHPYSRLIDFDRLLHLISLIIKYPNLGNLSESNPELIREIFGEEIKFECEIEEICGILAKEISSIYAQPEAIKQDLIWLEKMGIINQQNYEPLPDIEIVNIDDLVTHPYSDIEPFSRLIKTIHFIIHNPLNYEEKEGCLQSLINAMQEEKVININCGDSIRKDIEKVLKPFGILPDFTMKKGYFIGTGILSQTDLIKVFRLLEAQANSLSDPVALSVYETFKSRLGDAKIAHPESYPVRAIYNKNIVDLNSLSNTSLARKIDEVESSIEKGELLELNRFIGSGKFIQETEEKNINEDYFLAYPVQIVFHNIGWYLGYECFKGKDDGLFKFDRLDRLFLGRKPHQSRDEKQQINALNKLQKLYQASGGIFLGNNVKLQKQYFDLKQKSKAEITIGLWFNDYTFKFISEGTNRFPLQQMKMSPRLHKNSETNPPFTLKKTGDKNFPNRFQVKLPLWSLEDIDLLRWIVGFGGQVKVINPPELVNKVKQIGEAIALLY
>NZ_AP014824.1|WP_066122171.1|11543_11909_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MTNNRKITVEATLTFKRNLRNLKKKYRSIAQDIKPIIEQLETGELLGDRITGVNHQVFKLRVKNSDIQKGKSGGYRLIYYVKIEDVVVLLTVYTKSEQANISNQQIINIIKDYQVNSTTEN
>NZ_AP014824.1|WP_144439494.1|11898_12129_-|DUF2281-domain-containing-protein
MNIQTKILETLGKMPESLQEELLHYAEYLQEKYNRSNMTQLNGNDVINDFRISWHEAMTGQTIPVSQLWEGLEDDE
>NZ_AP014824.1|WP_066122176.1|12137_12524_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MKGYLLDTHAFIWLSENDPNLPINLRQKIDSAEKVYLSIISLWEIAIKINIGKLSLKKSYQHIENELKLSDILLLPITFADTQRLCKLPLYHRDPFDRMLIIQAMERELILVSKDTKFSAYPIEILWE
>NZ_AP014824.1|WP_066122239.1|12520_12751_-|DUF2281-domain-containing-protein
MNIETKILKTLEKMPVSLQEELLHYAEYLQEKYNQNNGKINASNQKLRSGILEGTFVLPLPDDFDESLEDFEEYMR
>NZ_AP014824.1|WP_066122243.1|12922_13147_-|hypothetical-protein
MLKSHEAIYDNGQVKWLEDTPKVTSARVIITILEESSKSVFSRRQPPEFIAGKGKTLGDIVSPIVSEDDWECLK
>NZ_AP014824.1|WP_066122179.1|13470_14304_+|hypothetical-protein
MTHPNSEDKIIFQQLIQPWQLSEYSLTSLIGQHTAVKDKSAQILESINNQIKEKLLTIKVCCNDENECQTLPKLIKERAYYLAVYLTNSTDMALVNHCDEEICEALSKLNIQNPEQLYYYLAEIDYQQHLYNYYQKSSNILLYVGAWNSRKNIKIGEYLIEALQLDKNTISPEKLLDLLEDPLHEIVKEFRDNGLEVSPIKSDQENTNLSDNDLWDKDEIEEDEEDWDEEESEANYYQDHNDYDDDYYYSSPDPFDGVDWGDPSTFNQAAWDQFRDD
>NZ_AP014824.1|WP_066122182.1|14358_14700_+|hypothetical-protein
MIDYSKIQKDSFLKFKTNDGNDNDLYIVISNNPFKQELTVKWYYPMQNQQNLKTLKYQELDQYDIEVFSPNVIISCPDCHGTGTVINGYSTMGGANPTHQNCKRCYTNGYIVK

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Crispr_ID: NZ_AP014824_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014824_2

42049-42146

Orphan

Consensus_repeat	Method
ACTATACATTTAATCTCTAGTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014824_2

>merge|NZ_AP014824|2|42049-42146|CRISPRCasFinder
ACTATACATTTAATCTCTAGTTTACTACCAATGAAAACTTCTTGAGAAATGTATTTTGAGAATAAAATTACACAACTATACATTTAATCTCTAGTTTA

>NZ_AP014824|2|2|42049-42146|CRISPRCasFinder
ACTATACATTTAATCTCTAGTTTA	CTACCAATGAAAACTTCTTGAGAAATGTATTTTGAGAATAAAATTACACA
ACTATACATTTAATCTCTAGTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014824.1\|WP_066122202.1\|22231_22528_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014824.1\|WP_066122211.1\|24165_25119_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|274042
NZ_AP014824.1\|WP_066122221.1\|28703_39404_+\|PD40-domain-containing-protein	unknown	unknown	gnl\|CDD\|380205
NZ_AP014824.1\|WP_144439493.1\|23739_24039_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014824.1\|WP_066122226.1\|42161_42347_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014824.1\|WP_082712913.1\|22750_23590_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|372577
NZ_AP014824.1\|WP_066122213.1\|25513_26266_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NZ_AP014824.1\|WP_066122216.1\|26439_26802_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NZ_AP014824.1\|WP_066120999.1\|48297_49611_+\|transposase	unknown	unknown	gnl\|CDD\|379252
NZ_AP014824.1\|WP_066122236.1\|46028_46904_+\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NZ_AP014824.1\|WP_066122223.1\|39482_41579_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234698
NZ_AP014824.1\|WP_066122246.1\|20089_20368_+\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|225291
NZ_AP014824.1\|WP_066122233.1\|43270_45478_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|334163
NZ_AP014824.1\|WP_066122218.1\|27322_28240_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105

Protein	Function_ID	Function_description	E-value
NZ_AP014824.1\|WP_066122213.1\|25513_26266_+\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	4.396e-70
NZ_AP014824.1\|WP_066122246.1\|20089_20368_+\|DUF433-domain-containing-protein	gnl\|CDD\|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	1.7009e-15
NZ_AP014824.1\|WP_066120999.1\|48297_49611_+\|transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.29321e-27
NZ_AP014824.1\|WP_066122236.1\|46028_46904_+\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	8.30498e-15
NZ_AP014824.1\|WP_066122223.1\|39482_41579_-\|hypothetical-protein	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	4.22372e-05
NZ_AP014824.1\|WP_066122221.1\|28703_39404_+\|PD40-domain-containing-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.0676e-20
NZ_AP014824.1\|WP_082712913.1\|22750_23590_-\|IS5-family-transposase	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.41955e-24
NZ_AP014824.1\|WP_066122216.1\|26439_26802_+\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	2.47897e-49
NZ_AP014824.1\|WP_066122233.1\|43270_45478_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	0.000228794
NZ_AP014824.1\|WP_066122211.1\|24165_25119_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|274042	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	3.36047e-32
NZ_AP014824.1\|WP_066122218.1\|27322_28240_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.41683e-43

>NZ_AP014824.1|WP_066122223.1|39482_41579_-|hypothetical-protein
MEVRLKNLEDGMLLWNNSSICTAHPRLKGSLAKVFSEYILPELGFSRQDIRSNLSLCLSTIPVIAFLNNGRRMLDLFSHSQNYPVRKTTLTYYRSVLIRFIDFLCMTLGDESLGFSSLSSIEEIQEKSKDNIESGENLLTIADAQKNSINLGNNPLTADSDENTVSLKDGIKSKDNSLTADSDENTVSLKGGIKSKDNSLTADSDENTVSLKGGIKSKDNPLSVASDENTVSLKDGIKSKDNSLSVASDENTVSLNDGIKSKDNSLSVASDENTVSLNDGTKLKDNSLSVASDEKKVSLEKFGISSRNSGSNNRGTGIKLNFNLISSQLKSEIENLLCFAQREEKRLSDCTVKSYLSIILYFLGWLHRCQGVSLSDVCLKDITNIIKLKGFVDWGYQERGNGLGWALNVISAAIFVARYYEQLSESVIDNISDLRQYLAQTREQYLHRNKPIEGKKELSLSQVLMVINYLRNCCASNVSDENTPNLMAQIKSWQRYLLISLLVYTPLRLSEIAEIKIDESIDLQKHLQEEGEDIFYLMVRIKGKRGSASSGVKRVKIPEFLSSDFGYWLNDLRPLVGEQSNFLFTKLGSYKHPSSRGKPLLLKDLSEMVTHEWNKSTEHLFGGAIPIKPQDLGRFNTGIQPNSTLSDIAEQIEKASRGSVKDSLLDPIISQLQQFPDKYKGLGSLGDILRQFENSIKR
>NZ_AP014824.1|WP_066122221.1|28703_39404_+|PD40-domain-containing-protein
MSTTIFNTEYILSEVIGIIKDDLQDFLLFGDVETTLNLAFGDNYDRTSTDAILTAWGKGDFSNLPKIEIVSSNILGSANGGFAVSTNTIYLSDRFSKTASADLFRAVIIEEIGHFLDAKVNQIDTQGDEGEIFSNLVRGITLTSSSVSVLQTENDLDTVLINEELVSIEKSTTYTGTNLGELNTGIQQLLSKLQAGVNSQILGANLPLLGTKLNGNPNTQFIQNLQNYFQTVLQGSHLSAISIQQALTNALGASGANVLLENITFNETTDNLEFALRLGKSSTNPLSFTTSTDTNLGLPGIDLSLTGSAQSNLSYDLNFKFGINKTSGFYFRTDQTNEFSVKLDTTLPGLNANAKLGFLKLNAQDAGSKFNGLFAVDLKDGDGKVQLTELPSLNLSSFIDPKLTGAANVKLGLKTAFAQNTNFPTLSSDFTLDWNFNGQTLGTGTTQNFGSLPAVAFKNVELDLGTFLNGYMEPILNRIKTITQPIQPVLDFFTKEYDFEFTKFSILDIAESLGAITQSDKDFIESLAEVGKLVNSVPSSGLAINLGSFNFGTQDIRTGGFNLGNIIPTNITSQDLETQLNSDPQANNFISRLLNMPGGGLSMPILSDPNAAFGLLLGKDVDLFKYKLPRFDFQTEYSQYFPLPIITAVGMRLTGKFGGFIDLGLGFDSKGFRDYQFSDKESDILNGFYIDNPSTPEVGFNMGVEASAELNLGVASAGGGGGIYGDFKFDLNDPDADGKVRFNELASLLSNPQDLFEAKGQITAGFFAYASVGVGYLKTTKRFNLPEFTLAEFNWGKQIPPGLALATLSSGTLYLNVGIRASSRIVGDTTDIAEVFSLKHEAGTATSETIVISGFQFNQTYTNVQQIRADAAEKDDRIILQENILVGAILNGGNGNDVISGGSGQDSISGNNDRDNLQGRGGNDTLRGGSGNDYVLGGLDNDFLYGDGEDDFLDGESGNDRVSGGAGNDMVFGNVGNDSLYGDSNEDELYGDAGADLLDGGTENDVIYGEAGIDTLKGGAGADLLDGDTENDSLYGDAGNDTLKGGVGADLLDGGTENDSLYGDGGIDTLKGGVGADLLDGGTENDVIYGDAGNDLLKGGAGNDLLDGGTENDSLYGDAGNDLLKGGAGNDLLDGGTENDSLYGDGGIDTLKGGVGADLLDGGTENDVIYGDAGNDTLKGGAGNDLLDGGTDYNDLDGGDGVDTVTYINLTRKVIVNIDQTKDYSHTDYRWKALEYVLFSANYFVSSAGLARTDTYDLLNNLENIMGSQFADLLIGNAFDNQIIGQKGNDLIVGNDGNDTLDGGEDIDVVVYGYDPATSVYVNLELNTAIDGYGKTDTLLDIEYAIGSDGDDTLVGNGQDNVLEGEKGNDLIESKIGNDVLYGDDGNDSLYGETGIDTLYGGLGNDLLDGGTENDSLNGYGGNDTLYGGTGVDRLYGNTENDLIYGDDDNDFIYGDAGHDTLKGGEGVDLLDGGTENDFIYGEGGIDTLNGRTGNDWLDGGTENDFIYGNAGNDTLKGGEGVDLLDGGTENDFIYGEGGIDTLKGNVGNDLLDGGTENDSLYGDAGNDTLYGGTGNDLLDGSTENDSLYGDGGIDTLKGNVGNDLLDGGTENDSLYGEGGIDTLKGGTGNDLLDGSTENDSLYGEGGIDTLKGGTGNDLLDGGTENDSLYGEGGIDTLKGGTGNDLLDGGTENDSLYGEGGIDTLKGGTGNDLLDGGTENDSLYGDAGNDTLKGGTGNDLLDGGTENDSLYGEGGIDTLYGGAGNDLLDGGTENDSLYGDAGNDTLKGGLGQDTLIAGAENDRGEGGTEGDYLRGEVGNDTLYGNDGDDVIVGGNEQQPLTFGDNDFLSGGNGNDILKPGWGDDIVDGGDGIDTLILDYSTLPTQAVNWVGYEEGTSNYDAYVSNAYGMLTPIRTSLNTAYSYRTTISADGTTIAVFGYLKTSDTDALGIPGLWVQKINSLEPPVQIMNYRGGDVKLSGDGSKIIWYEQSSVWTANADGTQVKRLTSLSYLDYSFTSGEGEQSTTISADGKTIAWARYKDSKTTIYIANFDGTNQRTIQVDSYVNSLDLSDNGFKITWAINWGGVWVANTDGSNKRELSGDLSAYNLVSSISGDGAIVAWVGTQTGVYAARTDGSQRWLVPNTEKVYSFGIDSLSYDGKRVVLDSSGEGVYVASVDGAEPLTLISSDIFSGGILESPSLSNYADIGVRYNSFNLSTGNGEINTWGPSRVKYSSVEQFNITGTAYGDDLRGGNLDDTLTGGDGGDTLTGGTGNDTYVLKALTGGGSLINDLSGTDKLDLSDINLILGVPSTSGNGMRRAGTTLFIDLNKDGVAGNNDLRIDNFFNATGTSAGSGFIETVDNLVGSNIVANLQIGNDTITGSAEDDLLDGWLGNDQLKALAGNDTLRGQDGNDVLDAGEGNDLLQGGNGNDTLAPGWGDDLVDGGAGTDILVLDYSNLNTRAVAWTTSTRKDNLFTSDSYEYSTFIANAYGLGTPVKLRDSNYNSSDLFALSGDGTTYAYFNTDGYNYDNPEFGLWVGKTDGGSPIKIDNNDYYYSYGISLSSNGNKIAWNSDGIYVANGDGTGKVALPNSSSAYGNFILSGNGNQIAWTNGNTLYVANTNGTNIRKITQNNGENISLSEDGSQIIWQGYQGDKYGVWYANTNVDLPMVKAFRGGNSSEFVSIIHSNGIKAIWADGSYGNFLAVGSVGSSEIQQVAGAYNLSQNFKDYSVLSDDGAKVAFIKLIGYQNPINSQDGLYGLYVADSFLTGTATLVTTVKRDIDENPYALGSSFGITNQLSLSSYVDIGVRYNSFNVSTGTGEINTWGPSRVKYSDVERFNIIGTRYGDDLRGANLGDTLMGGIGNDTITPGLGIDSVDGGVGNDLLVINYSTLTSNITSVIGTTINTIGDGINNIITYSNFEIFNVVTGSGTDKINGGVGDDTINGGSGADTMVGANGNDIYHVDDIGDRVVEALNEGTDFINSSVTYTLSVNIENLILTGTGNINSTGNTLSNLITGNIGNNNLSGGDGNDTLTSGRGNDTLNGGTGGDSMTGGRDNDIYYVDNTGDHVVELSNEGIDTVNSTITYTLGSNIENLTLTGTGNINGTGNTINNLITGNSGNNNLRGGDRNDTLIGGIGNDTLIGDTGNDIYYVDNTGDRVVENSNEGTDTVRSTITYTLGTNVENLVLEGTGNVNGTGNTDNNSITGNNLDNHLTGGDGNDTVNGRGGNDTLTGGIGNDSMIGGIGNDSYYVDSTGDQVLELLSEGADTVRSTITYTLTTNVENLVLEGTANINGTGNTLNNLITGNTGNNNLSGGDGNDTLNGGSGHDTLIGGIANDSMIGGTGNDTYYVDSTDDRILENLTEGTDTVRSTITYNLGTNVEHLILQGTGNINGIGNSLRNNITGNNLDNHLTGGDGNDTLNGGAGNDTLIGELGNDSLIGGSGNDTLIGGIGNDSMIGGIGTDYFRFNSSGEGIDAEGTLRARITDFNVIDDTILIRRDGFSGGLSLGTLPVNQFRVGSSATTSSQRFIYNSSNGAFFFDVDGNGATAAVQFATLNTGLALTNADILVI
>NZ_AP014824.1|WP_066122218.1|27322_28240_+|ParB/RepB/Spo0J-family-partition-protein
MVSKKEQPYSKLRGVDLLLGNSTNHQSINESSSELDINLIVKPPSQPRRYFDRQALEQLKSSIEQHGILEPLLVRPLADGKYELVAGERRLRAAIELKLTIVPVSIKTLTDLEAKQIALIENLQREDLNPVEETEGILQLLSMGLNLSADDVITQLYRMQNEKIKVNGNVSIKNETTVIIELFESLGMKWESFIRTRLPLLKLPDDILQALRMGQLAYTKAIALSKINDEKIRVDLLKESSEQNLSVREIKEKVKELSIGEKQTASAKIDITVKQIKKKKLWETEPKKWQKVEKLLEKINLLLED
>NZ_AP014824.1|WP_066122216.1|26439_26802_+|four-helix-bundle-protein
MSEIRDYKDLIIWQKGIEIAEKCYHLTKKYPKDELYGITQQIRRAGSSIPANIAEGYGRRYKAEYVRFLNISQGSVNELETHLIISVKVGLCSEIDVEYIINLLKQETRMLSALIKKLEK
>NZ_AP014824.1|WP_066122213.1|25513_26266_+|ParA-family-protein
MTSIIALFNQSGGVGKSTLTMNLGYSLMKKKKKVLLLDLDPQASLTTFMGIEPYDLEKTIYNTIIDEEDLPIHRQIHLMDLVPSNINLSGAEIELVSALMRELRLKEAIDPYLSKYDFILIDCPPSLGILSIISLVAATHLLVPIQCQFKAFQGTDLLLNTVARLRKSVNKNLAFAGFIPTMYDGRTAQESRTYEAIKEQLSPLATVFEPIPRSIAFADATEKRVPLAVYKPKHPAVKILNQISQQLIKL
>NZ_AP014824.1|WP_066122211.1|24165_25119_+|tyrosine-type-recombinase/integrase
MLLVSSDEIETLILKEPVPLTVHPAAVYLGSLAHGSQRTIRSALNKIARLISNNRCDLMTLDWSKLRYRHTAAIRTALSQQLSATTVNKMLVALRRVLHEAYRLDLMSANDYSKAVDLKSLNVKPQLRGRTLARNEIQALLASCEEEGKTISFRDGAVISLLRCGGLRRDELVKLELQDLDLDTGALLIRHGKGNKTRTVYLNEKAIELVKQWLSIRGYEPGALVCPVKLNGEVIFKHLSANGDSVYHLIRSRAKKAGLAHFSPHDFRRTFCSDLLTEGEDVFTVQDLAGHSSPVTTKKYDLRGEEVKRRAVKKLKF
>NZ_AP014824.1|WP_144439493.1|23739_24039_+|hypothetical-protein
MIKVQDLSIMIGCWYINPTRKKSWNEYLSLTEFTASRIHPDLEEAKKTLDGIKPCATEKKKYMYLDWQQFNKLFTTWQWIGLQDLGLIEIIDGKIIYLY
>NZ_AP014824.1|WP_082712913.1|22750_23590_-|IS5-family-transposase
MKLERIKKLKPEKFKRRFGVKKETYNLLVEIVKKEQNNHKRGRKSKLTVSEQILVTLEYLREYRTYFHISEYWNISESTVCRTVHKIEKILLKSGYFSLGGKKELIKKENEIKAVLIDVTEIAIERPKKRQKIYYSGKKKEHTFKAQLVVNKDTLEIICYVNGRGREHDFKIFKNSRLPLSEKIKCLVDKGYQGIEKIHKLSEIPKKKTKKRKLTQEEKRKNRELNRQRIVIEHVNRKLKIFRILSEKYRNKRKRFGLRFNLIAGIYNYEIVKKDIAII
>NZ_AP014824.1|WP_066122202.1|22231_22528_+|hypothetical-protein
MINHLKDLARWLYPKPTVNYLSDHRIVLITFPQWQEIEHDREHPTIDLTCIMLKSEDSEVPYYVREPLFTIVDEYQDYITQILHQYNYTKETERKNQF
>NZ_AP014824.1|WP_066122246.1|20089_20368_+|DUF433-domain-containing-protein
MVQATQHRYIVSDSSILNGEPIIEGTRTPVRAIVETWRMGITPEEIPQGMPHLTLSQVFSALAYYSEFTEEINHYIELNRIPDHLIDRLVKD
>NZ_AP014824.1|WP_066122226.1|42161_42347_+|hypothetical-protein
MAKKAVKSMRGIGESYDQVKQRYSICLTPTAHEKLKYFAQKKGVSLSELIEKIARTTIFLD
>NZ_AP014824.1|WP_066122233.1|43270_45478_+|tyrosine-type-recombinase/integrase
MKFKNAYDLIHGFKDHLFVQYPFDEAKTRWNQLQTAVTRYTIKGWGFHFTPDDTKLRKLNAELLKKAWSFLTTISVETFIHDGLNAQCKGFNYFDVSNKTKYTYRCALNKSIEFGKSIEFGKSTEFGKSTEFGKSTEFGKSTEFGKSTEFGKSTEFGNNIEFGKSIEFGKNIEFGKSIEFGKSTEFGNNIEFGKSIEFGKSIEFGNNIEFGKNIEFGKSIEFGNNIEFGKNIEFGNNIEFGKSAESHCNPDCIPFKLRRGYGRVSDNPVIYRPFMGEYGLKESQLTEGLLTQLSEFKKFRTQKYYPSRVEKAVRQSTIDTQNRSLLLIFGWRVNILGEDINSLSLETLIPAKPLSASVQQLKEVQKYVESWLCDLMSFLHTERQIDSAATMMNFLFCLLALAKFHYLPFNDNDNYVQVPVIRFLRTRINQLVKEKATQDSVADMSKKWMELPMFRDEVLEPLRLCCRRRKNCGDMRSLSAVAWSIQGYMMVGNLTYMPPRRQEELRDLRMAVSCPIKRPANLPVDGLVHPLPPDRYIGKNRFYGFLHRDESGVWYRDMTPESYKTGDIYGHQILEIPNIKFSDGYCFYDYIEMWLYGYYYAPNGELKANGAKFDPTASFLPRILETRSLYNPNHDFVFCQQNSRKFRATNLGKFFTNLCHTLTGIRVHPHLLRDIYATYYLDLGSSDALIRSLAYAMGHSVETLRKIYDRRRPAQKRQAIQKAVIDFFQQPWKDS
>NZ_AP014824.1|WP_066122236.1|46028_46904_+|sulfotransferase
MFQDNSTVFFDKNIIYVTGLPRAGSTLLCQLLGIHSHIYSIGHSSPLCPTLMKLRSSLSENPFLLSQLDVNFDLTYQRLINSFRGFINGWFRETPQSWVVDKNRGWLHHLETVYSLDPNFRMLVCVRELGQIYGSIEAQHQKTILLDFPDNLASLSPFDRADKLFNNSGVIGNPLHAMEVVQDLNSELQQRLYYVVFEHLMIEPVTVMKNIYEWLGLSPISFNPQQLPVKSSESDSHYHFKYLHRTYTQIKPPNSHVIPKRIQSELFKKYAWFYQTFYPGLLKPELTVRNL
>NZ_AP014824.1|WP_066120999.1|48297_49611_+|transposase
MINILALLTCLTLHIDNTSLKQLGCIIQGMFAMTGRVTMLGISRWTGKGGSYRTIQRFCHSPKNWPTLMWVFFHSHCFNRDESYAIAGDEVVTTKSGKHTYGVDWFFSSLTNAPVKGLSFFVLSLVGLEKRESYPLRIEQIIKPSVESNVNSTLPPMVGKRKRGRPKGSKNKDKSQYTLSSELFRIKGMLSALLSMIGDTIALKYLLLDGKFGHHNAAQMALQMGLHLVSKLRHDSALYLPSQGGNTKCKYGLKISPRKLSDTFLQFRSMQGDWNLQCYQLRVLHKEFSVPINVVIILKTHQKTREQGHVILFSTDLTLNAKKLVELYSLRFQIEFNFRDAKQFWGLEDFMNVSQIAVTNMVNLAFFMVNFSQKILQRFRRDCVNDFSLLDLKAFYRGFRYVDELIKLLPQKPEPILMSRIVNRLGNIGAIHPISFG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP014824_1	1.1\|5320\|50\|NZ_AP014824\|CRISPRCasFinder	5320-5369	50	NZ_AP014824	Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence	5320-5369	0	1.0
NZ_AP014824_2	2.1\|42073\|50\|NZ_AP014824\|CRISPRCasFinder	42073-42122	50	NZ_AP014824	Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence	42073-42122	0	1.0
NZ_AP014824_1	1.1\|5320\|50\|NZ_AP014824\|CRISPRCasFinder	5320-5369	50	NZ_AP014824	Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence	5242-5291	2	0.96

1. spacer 1.1|5320|50|NZ_AP014824|CRISPRCasFinder matches to NZ_AP014824 (Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence) position: , mismatch: 0, identity: 1.0

ctgttcggagcttccaaatccgagttctctagtctctgactgttctttat	CRISPR spacer
ctgttcggagcttccaaatccgagttctctagtctctgactgttctttat	Protospacer
**************************************************

2. spacer 2.1|42073|50|NZ_AP014824|CRISPRCasFinder matches to NZ_AP014824 (Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence) position: , mismatch: 0, identity: 1.0

ctaccaatgaaaacttcttgagaaatgtattttgagaataaaattacaca	CRISPR spacer
ctaccaatgaaaacttcttgagaaatgtattttgagaataaaattacaca	Protospacer
**************************************************

3. spacer 1.1|5320|50|NZ_AP014824|CRISPRCasFinder matches to NZ_AP014824 (Geminocystis sp. NIES-3709 plasmid pGM3709_03, complete sequence) position: , mismatch: 2, identity: 0.96

ctgttcggagcttccaaatccgagttctctagtctctgactgttctttat	CRISPR spacer
ctgttcggagtttccaaatccgagttctctagtctctgactgttctttac	Protospacer
**********.**************************************.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_AP014825

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP014825_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014825_1

27874-27971

Orphan

Consensus_repeat	Method
GTTATCGTTAAAACCTTGTATTTTTGCTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014825_1

>merge|NZ_AP014825|1|27874-27971|CRISPRCasFinder
GTTATCGTTAAAACCTTGTATTTTTGCTAAAAATATTAGTTATTTTGTTATAAAAATTAATAAGTCCAGTTATCGTTAAAACCTTGTATTTTTGCTAA

>NZ_AP014825|1|1|27874-27971|CRISPRCasFinder
GTTATCGTTAAAACCTTGTATTTTTGCTAA	AAATATTAGTTATTTTGTTATAAAAATTAATAAGTCCA
GTTATCGTTAAAACCTTGTATTTTTGCTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014825.1\|WP_066122319.1\|32038_34651_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014825.1\|WP_082713107.1\|34873_35170_-\|DUF1704-domain-containing-protein	unknown	unknown	gnl\|CDD\|369651
NZ_AP014825.1\|WP_066122297.1\|22975_25312_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319271
NZ_AP014825.1\|WP_066122330.1\|38031_38604_+\|zeta-toxin-family-protein	unknown	unknown	gnl\|CDD\|226648
NZ_AP014825.1\|WP_066122313.1\|29108_29786_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_AP014825.1\|WP_066122334.1\|38777_39029_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014825.1\|WP_066122324.1\|35332_36250_-\|DUF4007-family-protein	unknown	unknown	gnl\|CDD\|372513
NZ_AP014825.1\|WP_066122338.1\|39475_39784_-\|DUF1257-domain-containing-protein	unknown	unknown	gnl\|CDD\|177092
NZ_AP014825.1\|WP_066122336.1\|39097_39301_-\|DUF2997-domain-containing-protein	unknown	unknown	gnl\|CDD\|314207
NZ_AP014825.1\|WP_066122305.1\|26398_26659_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|225072
NZ_AP014825.1\|WP_066122295.1\|19515_21339_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|372641
NZ_AP014825.1\|WP_066122332.1\|38596_38785_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014825.1\|WP_066122360.1\|21331_22894_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_AP014825.1\|WP_066122327.1\|36424_37951_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|177094
NZ_AP014825.1\|WP_066122283.1\|16980_17193_+\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	unknown	unknown	gnl\|CDD\|378324
NZ_AP014825.1\|WP_066122302.1\|26139_26406_-\|Txe/YoeB-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|131171
NZ_AP014825.1\|WP_066122286.1\|17179_17575_+\|PIN-domain-nuclease	unknown	unknown	gnl\|CDD\|350328
NZ_AP014825.1\|WP_066122309.1\|26690_27491_-\|phosphoadenosine-phosphosulfate-reductase-family-protein	unknown	unknown	gnl\|CDD\|238846
NZ_AP014825.1\|WP_066122299.1\|25314_26001_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014825.1\|WP_066122292.1\|18423_19356_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197273

Protein	Function_ID	Function_description	E-value
NZ_AP014825.1\|WP_082713107.1\|34873_35170_-\|DUF1704-domain-containing-protein	gnl\|CDD\|369651	pfam08014, DUF1704, Domain of unknown function (DUF1704). This family contains many hypothetical proteins.	3.64399e-16
NZ_AP014825.1\|WP_066122297.1\|22975_25312_-\|hypothetical-protein	gnl\|CDD\|319271	cd16414, dndB_like, DNA-sulfur modification-associated domain. Family of proteins related to dndB. dndB acts in the regulation of DNA modifications, including DNA phosphorothioation. Both have a conserved DGQHR sequence motif. These proteins show similarity to the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system, and other members of the ParB/Srx superfamily.	3.0549e-10
NZ_AP014825.1\|WP_066122330.1\|38031_38604_+\|zeta-toxin-family-protein	gnl\|CDD\|226648	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown].	1.85716e-68
NZ_AP014825.1\|WP_066122313.1\|29108_29786_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.78535e-18
NZ_AP014825.1\|WP_066122324.1\|35332_36250_-\|DUF4007-family-protein	gnl\|CDD\|372513	pfam13182, DUF4007, Protein of unknown function (DUF4007). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 284 and 326 amino acids in length. This domain is found associated with pfam01507 in some proteins, suggesting a functional link.	2.54896e-136
NZ_AP014825.1\|WP_066122338.1\|39475_39784_-\|DUF1257-domain-containing-protein	gnl\|CDD\|177092	CHL00193, ycf35, Ycf35; Provisional.	1.32815e-18
NZ_AP014825.1\|WP_066122336.1\|39097_39301_-\|DUF2997-domain-containing-protein	gnl\|CDD\|314207	pfam11211, DUF2997, Protein of unknown function (DUF2997). This family of proteins has no known function.	2.82308e-10
NZ_AP014825.1\|WP_066122305.1\|26398_26659_-\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	4.10009e-06
NZ_AP014825.1\|WP_066122295.1\|19515_21339_-\|ATP-binding-protein	gnl\|CDD\|372641	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	1.43407e-18
NZ_AP014825.1\|WP_066122360.1\|21331_22894_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.94563e-50
NZ_AP014825.1\|WP_066122327.1\|36424_37951_-\|AAA-family-ATPase	gnl\|CDD\|177094	CHL00195, ycf46, Ycf46; Provisional.	0
NZ_AP014825.1\|WP_066122283.1\|16980_17193_+\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	gnl\|CDD\|378324	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB. VapB is the antitoxin of a bacterial toxin-antitoxin gene pair. The cognate toxin is VapC, pfam05016. The family contains several related antitoxins from Cyanobacteria and Actinobacterial families. Antitoxins of this class carry an N-terminal ribbon-helix-helix domain, RHH, that is highly conserved across all type II bacterial antitoxins, which dimerizes with the RHH domain of a second VapB molecule. A hinge section follows the RHH, with an additional pair of flexible alpha helices at the C-terminus. This C-terminus is the Toxin-binding region of the dimer, and so is specific to the cognate toxin, whereas the RHH domain has the specific function of lying across the RNA-binding groove of the toxin dimer and inactivating the active-site - a more general function of all antitoxins.	4.12678e-15
NZ_AP014825.1\|WP_066122302.1\|26139_26406_-\|Txe/YoeB-family-addiction-module-toxin	gnl\|CDD\|131171	TIGR02116, Hypothetical_protein_Rv3358/MT3466/Mb3393., toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by match to models TIGR01552 and/or pfam02604. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	4.24975e-24
NZ_AP014825.1\|WP_066122286.1\|17179_17575_+\|PIN-domain-nuclease	gnl\|CDD\|350328	cd18761, PIN_MtVapC3-like, uncharacterized subgroup of the VapC3-like nuclease subfamily of the PIN domain superfamily. The VapC3-like nuclease subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of various Mycobacterium tuberculosis VapC toxins including VapC3, VapC11, VapC15, VapC21, VapC25, VapC28, VapC29, VapC30, VapC32, VapC33, VapC37, and VapC39. It belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is a PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.60281e-75
NZ_AP014825.1\|WP_066122309.1\|26690_27491_-\|phosphoadenosine-phosphosulfate-reductase-family-protein	gnl\|CDD\|238846	cd01713, PAPS_reductase, This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase activity (sulphate adenylate transferase) .	2.12394e-26
NZ_AP014825.1\|WP_066122292.1\|18423_19356_-\|hypothetical-protein	gnl\|CDD\|197273	cd09176, PLDc_unchar6, Putative catalytic domain of uncharacterized hypothetical proteins with one or two copies of the HKD motif. Putative catalytic domain of uncharacterized hypothetical proteins with similarity to phospholipase D (PLD, EC 3.1.4.4). PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze transphosphatidylation of phospholipids to acceptor alcohols. Members of this subfamily contain one or two copies of the HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily.	8.24391e-21

>NZ_AP014825.1|WP_066122309.1|26690_27491_-|phosphoadenosine-phosphosulfate-reductase-family-protein
MTEKRVRHVLGLSGGKDSTALAILLHKEIPDMEYFFCDTHKELQETYDYLDRIQARLGIKIHYLSEKRGFDHWLAIHDGLLPSPQMRWCTVKMKIKPFEEFVGDDEAISYIGIRADENREGYISTKPNIKPVFPFKEKGLVKADILQLLEESGIGLPEYYKWRSRSGCFFCFFQRKYEWVMLAENHPDLFAKAVEYESNHQDGRTYTWNQGETLLELLERKEEIIAHHERSIAREQKKAPNRPLAEALESVLDDDDSTLPCLVCNL
>NZ_AP014825.1|WP_066122305.1|26398_26659_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
METILVNQDNNKIEKFLNQAIEKNQPILLKGETGNAVLISESEWNAIQETLYLSSIPNMIESIKKGGKTPLSECIEESSIRDILNG
>NZ_AP014825.1|WP_066122302.1|26139_26406_-|Txe/YoeB-family-addiction-module-toxin
MDKWQLVFTKQGVKDARKIASCGLGKQVNKLLDIIQQNPYESYPPYEKLTGDLKGYYSRKINIQHRLVYQVFEEKKTIKIIRMWTHYE
>NZ_AP014825.1|WP_066122299.1|25314_26001_-|hypothetical-protein
MKNEQRQFQGGMQIARIPQISGLYAWYYKPLLLENANDLTKTLTSFLDNQQEIKTQINMRYGVKLISESPLNIFYGSNNQSLAEIFSEAIQYGENFITHFFKSEAVQFFTRPIYIGIAKNFYTRVYQQHYLSLVEMWDDNSRISKYLTLHPEVNVQIVMTELNLSHSFALEARVRNIAPRDLMVHIFPTDNLPQEIGTDDEDMQSEQKYRRTLEKLLQIIADPICGRR
>NZ_AP014825.1|WP_066122297.1|22975_25312_-|hypothetical-protein
MSFSFGVQKDPIYGTYGEFAIGSDGNRVRAQFLLTKMKPGSEGSWENSLASQMVPWREIFNIEELTFDELLQRDLDDSRVAHDLIPYLLGESGAFARFFPPILAVLVPNKPERSGILSYYPIPENQNDTSISFGNLFDFEKAVIQGEVSPLGLIKYNRQKTAFIIVDGQHRAMALLALHRQINDSWAGNRYATYYNHLSLTENQVKNIELPICIVFFPDLHEGNQEYKDRGIDLKSVCREIFLVVNKTAKRVSQSRELLLDDEDFAARMMRETLSKLKGRGEDTASLARIYSFAFGDSISEAQNRKSEVVAGQLEYSTAVALYKMHAAVAFANPDAFKLEQLQDIITDGRRVVNTERPTAILIGTSLQKWSSLSRRSGKYHPPDEVQQAVKYLAEITDEVILSLFDKFHPFAVHNSEMRALRTRLQDPALRGDPIQAKCYSLLFEGSGVRTVFEDHIKRLKDRKDSLEDEGKSIGDYIINQLNDAQATSTQVNRYEEDIKKRRAAKLFNIDYSRFFTSEDNIEDQKELLNRSKWIYDTISTQAFQLGYLMAVHSVVEIFMQPDSKYEDRLNIVKFINNLYLNALNQYFSSDSNTEHRTLTGFVKESRTKVFDPNELGLRGLLAQSVKELNETQWIFFRYAILEIVHSKYSSEALLTFLNNPDNSSLSQKYRELLPELVNSLLNLRDGYIKKAVDSALNSKEFNQEILLLKAGLKGEGKSDEEINEQEQQKRNQTETSIRDKCRENISASLGKFTEADKIIDRISKQSSLENVNSESVE
>NZ_AP014825.1|WP_066122360.1|21331_22894_-|DEAD/DEAH-box-helicase
MPIFNILKLLDKYGIDKEQLITALLTLKTKEELLRSKYHRDLILELLTSEQAKILATVWNAPPDKDVYKRLKKVTIKQNSEAEKYLFNLFEIPVYRQTNITVEKPSFLEIIPQYPLFKHQRNAANRVKKYLYNSPYRGLLHMPTGAGKTRTAMNIIADHLRNNELTLVVWLAYSEELCEQAVNEFEKAWGYFGDRTLTVYRFWGSHDLAIEDIKDGFVVAGLSKVYNALQKSIRFINQLGVRTSLVIIDEAHQAIAPTYKLVLDSLVIPYEKKALLGLTATPGRTWADIDKDAQLANFFAQQKVTLEIEGYDNPVDYLVEQEYLAKAIYRPLFYDSGLKLTQKDIKRINEELDIPPYILHRLEEDEQRNLRIILELETLTQRHKRIIVFAISVNHAQILTSVLRLRGWNAIALTGTTPKAEREAIINSFKDSSPEPKVLCNYGVLTTGFDAPKTSAAVIARPTKSLVLYSQMVGRAIRGLKAGGNATAEIITVVDSEMPGFGSVSDAFNNWEDVWRKNHE
>NZ_AP014825.1|WP_066122295.1|19515_21339_-|ATP-binding-protein
MNNNPHDIVPAHLAVQAMRDNGYKNAAYAIAELMDNAIQAGASQVELLCGQRMKQLTSRKSSHIEQIAVLDNGCGMDAIVLRLALQFGNGTHLEKDQHTGIGRFGMGLPSSSVSQCKRVDVWSWQNGIENTLYTYLDLDEIKTRQLNEVPQPIPKSVPHTWLKVGQGFGQSGTLVVWSKIDRCMWRTGKTIIDHSELLIGRMYRKFLDNDQVKIRMYAFDLDTYEQILERYALPNDPLYLMSKTSCPPPFDNKPMFKLWDGDNNKETTFLFNFEGKDHEVKVRFAYAKEEARKSENGQQPGALPHGKHAQKNLGISVVRAGRELELDQTLVNSYEPTERWWGVEVEFPPALDDLFGVTNNKQSARNFCEVLALDIESLLENGKTVAQLKEELKEDEDPKLPLLDIAEKINSTLSIIRASLKAQTKGDRNSYKRHENYKPQKTATFITRERQSNGYQGESDRDEQLPKEERKQAIQTTLIEDGITASQAELLAATTVDEGLKYIFAEIALDTPAFFSVKPKGGAIIVELNTKHPAYKNLVEVLEDNIEDADIDILRTRLGNSLKALKLLLMAWARYEDEQPEGIRKQNAQDARIDWGRLARRFLENEE
>NZ_AP014825.1|WP_066122292.1|18423_19356_-|hypothetical-protein
MNFGNQLKNLCEKAENEIILVAPFIKNSIFKELLKLTNPEIKITCVTRWRIEEILMGVSDIEIWEIIKSFPYASLWLRNNLHAKYYRVDKQCLIGSANLTANALNWSKKPNFELMISVNSDDDELKNFEHQLFNNCIKVDQVLFNLYQSAIVEQKELLSLKLDSNNMFGLNKNTDQNIIKNWLPTLRNPEDLYFAYTNEYDRLTNIACQNAIIDLSVFELPKSLSKTLFNLYIGIQLLEKPIIQEIDDFITIPRRFGEVCDYLNKIKGEEIDYINIKIQWQTLMRWFLYFLPSRYGLSVPNYSEIFYKYQ
>NZ_AP014825.1|WP_066122286.1|17179_17575_+|PIN-domain-nuclease
MYLIDTSVWINIFRDKTGIKRKQLENIIRDNPFFLSHFTQMELLQGAKNEKEWQLLETYLYDQDYLMENDLIFVNSARIFYDLRRKGLTVRSSIDCCIAQLALTYDLILLHNDKDFEIIKKVRNLQTITFS
>NZ_AP014825.1|WP_066122283.1|16980_17193_+|type-II-toxin-antitoxin-system-VapB-family-antitoxin
MRTNIDLDDSLLEEAFRLTNVRTKKELVNLALKEFIRSRQKLNLLDLSGKIELREDYDYTQLRNNKNVPN
>NZ_AP014825.1|WP_066122313.1|29108_29786_-|Uma2-family-endonuclease
MVAQLEKTTTSEIIYPDSDGKPIADNTLQFRWITTIKTNLDWLFADNPQVFIAGDLLWYPVEGDNKKRVAPDVMVVFGREKGERGSYQQWKENNIPPQVVFEILSPGNTTKEMYGKLLFYQNHGVEEYYIYDPDMNDLTVFVRQNNILEMIEGIDSWESPRLGIRFQLSQPELNIYYPNGDRFSTYNEEKQKVLAEKQRAEKEKERADKLEAKLRELGINLDDIN
>NZ_AP014825.1|WP_066122319.1|32038_34651_-|hypothetical-protein
MNNSTLANYFTLERRYTRSINLERDFDDIEALKGYILTDKAIDVLGRILRGLTRENNSNCWTLTGVYGTGKSAFCHYLTCLLSPKNSNIYKLNSLIIESILKVDNDLIQHYKQLINNFPKQGFIRAIAVSQRESVTNTIIRALFIGLDNFKLKNKIHFQEQLEGFNELIKQGKNIQNSAIIALIKEIIIQAKTDLIFIIDELGKNLEYAVYNQGAEDVYLLQQLAELESINGNRVYILGILHQAFTEYGQRLAKIQRNEWAKIQGRFEDIPFTESVSQMMRLMGEAINLGKEIKDADTDRQEGNPSLSPLARVNSSLSSVSRGEDNRQEEFLQNFDDDFFQYERIVDYSQQWFDSLYQTLSVEKIDKSILEDIYPLHPLTALVLPTLCMRYAQNDRTLFTFITSDEPFSLKNFLTETVIDKDNLPTLKLDQVYDYFIESAGMGLTSRPNLQRWIEIYDLIADSKSLDEDSLRVLKVIGILNLVTITGITRATRQLVALGLCDLPQEEKVNYWQEKIDSLLKGGIITHRRQIDELRIWQGSDFNVDQELESYQEPESLVKLLSELRPLKPMVAQRHSYQTGTLRYFERHYLDTSSYLEKLKCDSDTADGYLGYWLAEDIPSSFPSSTVDGLPLIIITASNLTILRLRVREFSALNWLDKTAKELQADGVARKEVRYRLAEAERFLDDTLANVFDVREENNQCWIQGKLVNISSISHLNSELSRICEQVYPKSPILWNELINRRNLTAQGMMARRQLISAMINNSTLPKLGLTGYGPEVTMYFSLLQETGIHRQGEEIKSIGEGRQQVTNSQQLIGNSQQVTNSQQLTGNSQQVISQNSNHNLVNYNEQLISSQINNNITSDKNILKAPPRH
>NZ_AP014825.1|WP_082713107.1|34873_35170_-|DUF1704-domain-containing-protein
MWLNYSNRQISRFGFLVRSDCLKLLFCGKLDVLDLPALAELTSLGLCQLPQYLSPWIIDPRSLLAFLTYSTFMTNVDLVKHTEVAERLLADTPIISHL
>NZ_AP014825.1|WP_066122324.1|35332_36250_-|DUF4007-family-protein
MNKTNLELNLLDNPVTSTFARHETFHPRWGWLKKGFDAASNDSHIFNSEDAPVRLGVGKNMVRSLRYWCYAFKIIDDDNTPSFFGNNLLGVNGWDRYLENPASLWLLHWNLLKPTCNAGAWYYAFNLFNQNEFKKEDLLKGLTDYLQELNKTVADSSLVKDINCILRMYVESDNDNTNFVEDSIDCPFTELGLIYQPKNSNYYRFRFGSKPNLLSAIIVATCLEYASWVSQNQFTITISRLLYDKGSPGTVFKLSEEAIYSAIEAVCRQESSLFLADTAGLVQLSFEKNPLDLASQILDRFYGRI
>NZ_AP014825.1|WP_066122327.1|36424_37951_-|AAA-family-ATPase
MSFSQELDTYLRARFTLMILVTQEEERAIQTVKQVCNQNQRPCLSWDVADGFQSLTNDKASLPTAKDALTALEQIEKASTDALFVLKDFHDCWKNDTIKRKLRSVAQRLKLTKKSILITSPLNAIPAELKDEAVMVEFPLPKEIELETVLNSLAKTPGVKVNLTPLGKEKLIQAALGLTTAQAQRVFAKAIVSNGRLDDRDINIVTEEKKQIIRESQALEFYAVHETPNDVGGLEILKQWLRLRERAFSQEARDYGLPAPKGIALIGIPGTGKSLTAKMIGGLWRLPLLKLDIGSLFGSLVGQSEERTRQALQLAETVAPCVLWIDEMEKAFASGGLDGGTSTRVFGTILTWMQEKTAPCFVVATANNISQLPPELLRKGRFDEIFFLDLPTKAEREEILAVHLKKRNRFPEDFDIKTLSGICEGYVGAEIEQAIIDAMYLGFNQNREFNNQDVTKALKNQVPLSVSQKETIELLRNWLKEGRAQSASFEEVRQAELEFVPLQLDIRQ
>NZ_AP014825.1|WP_066122330.1|38031_38604_+|zeta-toxin-family-protein
MSNLYIISGANGSGKTTTAMTILPQFLKVMEFVNADEIAKGISPFNPESVAIQAGKIMLQRLDFLASQRKDFAFETTLSSRHYARFLRKCKQMGYRINLLYFWLQSPELAISRVKRRVESGGHNIPEDVIIRRYQRGLTNLFKLYLPLCDNWLIYNNSQKNTELVATYFENELTVDNPYLWSKIKGDYNE
>NZ_AP014825.1|WP_066122332.1|38596_38785_+|hypothetical-protein
MSKRDLNPLFQKIDRGVKLAIKNELDKHRRLNQAISIYQDGKIITLKGEEIGKILDNNKDND
>NZ_AP014825.1|WP_066122334.1|38777_39029_+|hypothetical-protein
MIKRFFRSFQKEGEDLVGEKLLNNVNLEELQKLFKVDGNNPMYDCYLIENQEQFDYLQNKFNVNLNDELYDYYLETDTFSEDN
>NZ_AP014825.1|WP_066122336.1|39097_39301_-|DUF2997-domain-containing-protein
MDLQEIDVFIDDNGEVKLEIRGVKGQKCLDLTQDLEAILGGEIISREMTPEAGEVIQKIKNQEFNWS
>NZ_AP014825.1|WP_066122338.1|39475_39784_-|DUF1257-domain-containing-protein
MSHFTRLKTKIVEKEYLKQALIDLGYKYQEGNVQVNGYSGNRTNADLKIFTSNPNYDIGFQKQEDNYEIIADWWGIREIQQAQFVQTKLLIKNMLIMPLKVN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP014825_1	1.1\|27904\|38\|NZ_AP014825\|CRISPRCasFinder	27904-27941	38	NZ_AP014825	Geminocystis sp. NIES-3709 plasmid pGM3709_04, complete sequence	27904-27941	0	1.0
NZ_AP014825_1	1.1\|27904\|38\|NZ_AP014825\|CRISPRCasFinder	27904-27941	38	NZ_AP014825	Geminocystis sp. NIES-3709 plasmid pGM3709_04, complete sequence	27836-27873	3	0.921
NZ_AP014825_1	1.1\|27904\|38\|NZ_AP014825\|CRISPRCasFinder	27904-27941	38	NZ_CP015636	Borrelia turicatae strain BTE5EL plasmid lp48	3694-3731	9	0.763
NZ_AP014825_1	1.1\|27904\|38\|NZ_AP014825\|CRISPRCasFinder	27904-27941	38	NZ_CP019369	Borrelia turicatae 91E135 isolate Oz1 plasmid lpU43, complete sequence	25853-25890	10	0.737
NZ_AP014825_1	1.1\|27904\|38\|NZ_AP014825\|CRISPRCasFinder	27904-27941	38	CP024687	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence	8115-8152	11	0.711
NZ_AP014825_1	1.1\|27904\|38\|NZ_AP014825\|CRISPRCasFinder	27904-27941	38	NZ_CP015180	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB71, complete sequence	32225-32262	11	0.711
NZ_AP014825_1	1.1\|27904\|38\|NZ_AP014825\|CRISPRCasFinder	27904-27941	38	NC_020240	Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pAW63, complete sequence	32306-32343	11	0.711

1. spacer 1.1|27904|38|NZ_AP014825|CRISPRCasFinder matches to NZ_AP014825 (Geminocystis sp. NIES-3709 plasmid pGM3709_04, complete sequence) position: , mismatch: 0, identity: 1.0

aaatattagttattttgttataaaaattaataagtcca	CRISPR spacer
aaatattagttattttgttataaaaattaataagtcca	Protospacer
**************************************

2. spacer 1.1|27904|38|NZ_AP014825|CRISPRCasFinder matches to NZ_AP014825 (Geminocystis sp. NIES-3709 plasmid pGM3709_04, complete sequence) position: , mismatch: 3, identity: 0.921

aaatattagttattttgttataaaaattaataagtcca	CRISPR spacer
aaatattagttattttgttataaaaattaataaatctg	Protospacer
*********************************.**..

3. spacer 1.1|27904|38|NZ_AP014825|CRISPRCasFinder matches to NZ_CP015636 (Borrelia turicatae strain BTE5EL plasmid lp48) position: , mismatch: 9, identity: 0.763

aaatattagttattttgttataaaaattaataagtcca	CRISPR spacer
acatattagttattttcttatcaaaattatttaattat	Protospacer
* ************** **** ******* * *.*.

4. spacer 1.1|27904|38|NZ_AP014825|CRISPRCasFinder matches to NZ_CP019369 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpU43, complete sequence) position: , mismatch: 10, identity: 0.737

aaatattagttattttgttataaaaattaataagtcca	CRISPR spacer
acatattagttattttcttatcaaaattatttaaattt	Protospacer
* ************** **** ******* * *. ..

5. spacer 1.1|27904|38|NZ_AP014825|CRISPRCasFinder matches to CP024687 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence) position: , mismatch: 11, identity: 0.711

aaatattagttattttgttataaaaattaataagtcca	CRISPR spacer
agctactagttattttgttctaaaaattaacgatattg	Protospacer
*. **.************* **********..*  ...

6. spacer 1.1|27904|38|NZ_AP014825|CRISPRCasFinder matches to NZ_CP015180 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB71, complete sequence) position: , mismatch: 11, identity: 0.711

aaatattagttattttgttataaaaattaataagtcca	CRISPR spacer
agctactagttattttgttctaaaaattaacgatattg	Protospacer
*. **.************* **********..*  ...

7. spacer 1.1|27904|38|NZ_AP014825|CRISPRCasFinder matches to NC_020240 (Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pAW63, complete sequence) position: , mismatch: 11, identity: 0.711

aaatattagttattttgttataaaaattaataagtcca	CRISPR spacer
agctactagttattttgttctaaaaattaacgatattg	Protospacer
*. **.************* **********..*  ...

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage