CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013457	Burkholderia sp. MSMB617WGS chromosome 1, complete sequence	4 crisprs	cas3,DEDDh,csa3,RT,DinG	0	3	13	1
NZ_CP013458	Burkholderia sp. MSMB617WGS chromosome 2, complete sequence	3 crisprs	csa3,cas3,DinG	11	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013457_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013457_1

1367171-1367357

Orphan

Consensus_repeat	Method
GCCGACGCGAAGGCGG	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP013457_1

>merge|NZ_CP013457|1|1367171-1367357|PILER-CR
GCCGACGCGAAGGCGGTTGACGTGAGGGCCGCGCTCGAAGCCGTGCCGATCGACGCGAAGGCGGCTGAGCCGAAGCACGCCGACCCGAAGATCGCGGAGTTCCGAGCCGACGATCCGAAGGCGGCCGACGCGAAAGCCTCGGCCGACGCGAAGCCCGTCGAGGCGAAATCCGCCGACGCGAAGGCGG

>NZ_CP013457|1|1|1367171-1367357|PILER-CR
GCCGACGCGAAGGCGG	TTGACGTGAGGGCCGCGCTCGAAGCCGTGCCG
ATCGACGCGAAGGCGG	CTGAGCCGAAGCACGCCGACCCGAAGATCGCGGAGTTCCGAGCCGACGATCCGAAGGCG
GCCGACGCGAAAGCCT	CGGCCGACGCGAAGCCCGTCGAGGCGAAATCCGCCGA
CGCGAAGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013457.1\|WP_038750323.1\|1359096_1359696_+\|RNA-polymerase-sigma-factor-RpoE	unknown	unknown	gnl\|CDD\|131985
NZ_CP013457.1\|WP_038750344.1\|1369624_1370398_+\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|235380
NZ_CP013457.1\|WP_059584622.1\|1370403_1370835_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
NZ_CP013457.1\|WP_038750351.1\|1371944_1373342_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP013457.1\|WP_060356890.1\|1375800_1378119_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP013457.1\|WP_038750322.1\|1358520_1358994_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013457.1\|WP_038750360.1\|1378232_1378826_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP013457.1\|WP_038750336.1\|1365285_1366179_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|182787
NZ_CP013457.1\|WP_186448572.1\|1368800_1369628_+\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|234622
NZ_CP013457.1\|WP_038750356.1\|1374354_1375575_-\|elongation-factor-P-maturation-arginine-rhamnosyltransferase-EarP	unknown	unknown	gnl\|CDD\|378385
NZ_CP013457.1\|WP_038750329.1\|1361454_1362963_+\|DegQ-family-serine-endoprotease	unknown	unknown	gnl\|CDD\|273938
NZ_CP013457.1\|WP_038750333.1\|1363475_1365269_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP013457.1\|WP_038750341.1\|1367881_1368781_+\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP013457.1\|WP_038750354.1\|1373612_1374170_-\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NZ_CP013457.1\|WP_038750327.1\|1360382_1361438_+\|MucB/RseB-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225570
NZ_CP013457.1\|WP_060356888.1\|1359777_1360377_+\|sigma-E-factor-negative-regulatory-protein	unknown	unknown	gnl\|CDD\|319992
NZ_CP013457.1\|WP_060356887.1\|1357270_1358509_+\|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|235987
NZ_CP013457.1\|WP_038750331.1\|1362959_1363214_+\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NZ_CP013457.1\|WP_038750349.1\|1370860_1371889_+\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|235417
NZ_CP013457.1\|WP_004197638.1\|1356874_1357114_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197

Protein	Function_ID	Function_description	E-value
NZ_CP013457.1\|WP_038750323.1\|1359096_1359696_+\|RNA-polymerase-sigma-factor-RpoE	gnl\|CDD\|131985	TIGR02939, Sigma_factor_ECF_subfamily, RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.	5.62782e-104
NZ_CP013457.1\|WP_038750344.1\|1369624_1370398_+\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|235380	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional.	2.05728e-150
NZ_CP013457.1\|WP_059584622.1\|1370403_1370835_+\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	7.0424e-51
NZ_CP013457.1\|WP_038750351.1\|1371944_1373342_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.31747e-131
NZ_CP013457.1\|WP_060356890.1\|1375800_1378119_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	4.3943e-163
NZ_CP013457.1\|WP_038750360.1\|1378232_1378826_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	4.09579e-47
NZ_CP013457.1\|WP_038750336.1\|1365285_1366179_+\|signal-peptidase-I	gnl\|CDD\|182787	PRK10861, PRK10861, signal peptidase I.	1.15879e-92
NZ_CP013457.1\|WP_186448572.1\|1368800_1369628_+\|DNA-repair-protein-RecO	gnl\|CDD\|234622	PRK00085, recO, DNA repair protein RecO; Reviewed.	3.20132e-81
NZ_CP013457.1\|WP_038750356.1\|1374354_1375575_-\|elongation-factor-P-maturation-arginine-rhamnosyltransferase-EarP	gnl\|CDD\|378385	pfam10093, EarP, Elongation-Factor P (EF-P) rhamnosyltransferase EarP. This entry includes family members such as EarP enzymes which are essential for post-translational activation of elongation factor P(EF-P). It was identified as EF-P arginine R32 specific rhamnosyl transferase in Shewanella oneidensis using dTDP-beta-L-rhamnose as donor substrate. This was further confirmed for Pseudomonas aeruginosa, Pseudomonas putida, and Neisseria meningitidis. As for S. oneidensis and P. aeruginosa, EarP enzyme acts as an inverting glycosyltransferase, thus mediating the formation of an alpha-L-rhamnosidic linkage. Structural analysis show that EarP is composed of two opposing domains with Rossmann folds, thus constituting a B pattern-type glycosyltransferase (GT-B) and provide basis for arginine glycosylation by EarP. Mutational analysis of efp and earP genes, resulted in a substantial decrease in the production of rhamnolipids and pyocyanin (important factors for colonization and invasion during infection) of P. aeruginosa. Collectively this indicates that EarP and EF-P are essential for P. aeruginosa pathogenicity.The protein family is also annotated in the CaZy Database as GT104.	0
NZ_CP013457.1\|WP_038750329.1\|1361454_1362963_+\|DegQ-family-serine-endoprotease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP013457.1\|WP_038750333.1\|1363475_1365269_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP013457.1\|WP_038750341.1\|1367881_1368781_+\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	1.71297e-173
NZ_CP013457.1\|WP_038750354.1\|1373612_1374170_-\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	1.27149e-97
NZ_CP013457.1\|WP_038750327.1\|1360382_1361438_+\|MucB/RseB-C-terminal-domain-containing-protein	gnl\|CDD\|225570	COG3026, RseB, Negative regulator of sigma E activity [Signal transduction mechanisms].	1.60852e-80
NZ_CP013457.1\|WP_060356888.1\|1359777_1360377_+\|sigma-E-factor-negative-regulatory-protein	gnl\|CDD\|319992	cd16328, RseA_N, N-terminal domain of RseA. This family contains the cytoplasmic (N-terminal) domain of RseA, the transmembrane anti-sigma-E factor. RseA is degraded during sigma-E-dependent transcription caused by bacterial envelope stress such as heat shock. It is an inner membrane protein with an N-terminal cytoplasmic domain that binds sigma-E and blocks its transcriptional activity, and a C-terminal periplasmic domain that binds RseB, an auxiliary negative regulator. Under inducing conditions, RseA is rapidly degraded and sigma-E is released into the cytoplasm, where it can bind core RNAP and induce its regulon. It has been shown that just the N-terminal domain is sufficient to bind and inhibit sigma-E. The C-terminal domain may interact with other proteins that signal periplasmic stress.	2.48469e-12
NZ_CP013457.1\|WP_060356887.1\|1357270_1358509_+\|beta-ketoacyl-ACP-synthase-II	gnl\|CDD\|235987	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II.	0
NZ_CP013457.1\|WP_038750331.1\|1362959_1363214_+\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	3.10799e-18
NZ_CP013457.1\|WP_038750349.1\|1370860_1371889_+\|beta-N-acetylhexosaminidase	gnl\|CDD\|235417	PRK05337, PRK05337, beta-hexosaminidase; Provisional.	0
NZ_CP013457.1\|WP_004197638.1\|1356874_1357114_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	4.90677e-35

>NZ_CP013457.1|WP_038750336.1|1365285_1366179_+|signal-peptidase-I
MNFALILFVLVVVTGIAWVLDKLVFLPQRKKAADAAVAEFDRQQERIGERFADENAPQTRARLRDEKLRQPWWLEYTASFFPVILVVFVVRSFIVEPFKIPSGSMVPTLLVGDFILVNKFDYGLRLPITNQKITEGRPLQRGDVVVFRYPKDESVDYIKRAIGLPGDTVAYQDKKLTINGQPVPEAPLPDYFDEERMNYAKQFEETIGARKNAILNNPAVPPFVMGADDYPYRDNCQYDSRGVVCKVPPGHYFMMGDNRDNSADSRYWGFVPDKNIVGRAFFIWMNFSELKRVGSFN
>NZ_CP013457.1|WP_038750333.1|1363475_1365269_+|elongation-factor-4
MDHIRNFSIIAHIDHGKSTLADRIIQLCGGLSDREMEAQVLDSMDLERERGITIKAQTAALTYRARDGKVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTAIELGVEVVPVLNKIDLPAANPENAIAEIEDVIGIDATDAVRCSAKTGLGVEDVLESLIAKVPPPKGDPDAPLQALIIDSWFDNYVGVVMLVRIVNGTLRPKEKIKLMATDAQYAVEHVGVFTPKSRNLESLSAGQVGFIISGIKELTAAKVGDTVTHATKSAPEPLPGFKEVKPQVFAGLYPVEANQYDALRESLEKLKLNDASLQYEPEVSQALGFGFRCGFLGLLHMEIVQERLEREFDMDLITTAPTVVYEVVQSDGATIMVENPAKMPEPARIAEIREPIVTVNLYMPQDYVGSVITLCEQKRGMQINMQYHGRQVQLTYEIPMAEIVLDFFDRLKSVSRGYASMDYEFKEYRTSDVVKVDMLINGDKVDALSIIVHRSQSQYRGREVAAKMREIIPRQMYDVAIQAAIGAHIIARENIKALRKNVLAKCYGGDITRKKKLLEKQKEGKKRMKQVGSVEIPQEAFLAILRVEDK
>NZ_CP013457.1|WP_038750331.1|1362959_1363214_+|glutaredoxin-family-protein
MSAAARFTLYGRGWCHLCDDMRDALAPVAAECSASVDYVDIDAEPALVARYDEDVPVLLLDGVEVCRHRFDEARVREALARRGA
>NZ_CP013457.1|WP_038750329.1|1361454_1362963_+|DegQ-family-serine-endoprotease
MMNPSLRTRLVAAAVAALAPLAAHSATAAPNVTAAPAATGTAPAPRAALPDFADLVEKVGPAVVNIRTTASVPADTRGALPPGLDNGDMSEFFRRFFGIPLPQPPGGQKNAPSTPDAPDTEQNRGVGSGFVLSPDGYVMTNAHVVDDADTIYVTLTDKREFKAKLIGVDERTDVAIVKISATNLPTVAIGDSNRVRVGEWVVAIGSPFGLDNTVTAGIVSAKGRNTGDYLPFIQTDVAVNPGNSGGPLINMQGEVIGINSQIYSRTGGFMGISFAIPIDEAMRVAEQLKASGKVTRGRIAVAIGEVTKEVADSIGLPKAEGALVSSVEPGGPADKAGLQPGDIILKFNGRPVDTASDLPRMVGDTKPGAKATVTVWRKGQSRDLPITIAEFPTDKGAKTESRQAPQQKPRSNALGLTVSDLSPEQLKTLKLRNGVQIDAVDGPAARAGLQRGDIVLRVGDVDITSAKQFVDVASKLDPQRAVAVLVRRGDNTQFIPIRPRQK
>NZ_CP013457.1|WP_038750327.1|1360382_1361438_+|MucB/RseB-C-terminal-domain-containing-protein
MRTLQLNQAILGWRRLPALLLCAAALLSVQSAAFAQQPDNPVATRRSAAEWLDRIQQAAQQQNYEGTFVYQRGAYVQSSRIVHFASKGDGEFEQVESLDGKPRKLLRHNDDLYTFVPERRLCVVERRQNKDSFPALLGAGGEQVLSVYEPKALGRDRVAGLDAQVVELVPKDAYRFAYKLWTDAKTGLLLRSQTLDADDHVLEQIAFSQLQLGAAAPNQKTAIAAGMRNLGGWTVVRPPVAPIDIEAQGWQIAPTVAGFRKIREVRRPMAARDASDPPIPVDQAVFTDGLATISVFIEPAEKNSRKEGAGSTGATHVLVKRRGDFWITVLGEAPPATLQQFASAIEYKASK
>NZ_CP013457.1|WP_060356888.1|1359777_1360377_+|sigma-E-factor-negative-regulatory-protein
MGSVSTQSHTCSQRERVSALVDGEAPEGLSLKQILAGLGDAERATWAQYHVIGDALRSDELTLEPAESGAFMARFSASLVAEPHLLAPAAAPVARRLLGLRRRVVPAFAVAAAAATLTWIVVPQMQRVGAPGAVQVALVSPAQQGLQRVSAAQPALQDANIIRDASLDQYLEAHQQFAQQPVVTGSMPVIRTAVTTQGQ
>NZ_CP013457.1|WP_038750323.1|1359096_1359696_+|RNA-polymerase-sigma-factor-RpoE
MSEKEIDQVLVERVQNGDKAAFELLVSKYHRKIIRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTDADAEEAETFSDADQLRDINTPESMLMSKQIAQTVNAAMALLPEELRTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW
>NZ_CP013457.1|WP_038750322.1|1358520_1358994_+|hypothetical-protein
MTEPFHAASAGAQHVVLRASACLRAACALFVPVVGAAVHAGAAPLVGNGGAAALAVLVAALVALRARAACERRQPAALRIDAGAGVLAAFDRGGRLLARGRIAGCTQWSDLLVVLTVQGRGRRATPLVIPVDAVDAPVFRALCVLGRRAARGTLAAA
>NZ_CP013457.1|WP_060356887.1|1357270_1358509_+|beta-ketoacyl-ACP-synthase-II
MSRRRVVVTGLGLISPVGNNVADGWANLVAGKSGIVNITKFDATNFSTRFAGEVKGFNVEDYIPAKEARHMDTFIHYGIAAGVQAMHDSGFQVTDENAERVGVVVGSGIGGLPMIEVTQTELLNRGPRRISPFFVPASIINMISGHLSIKFGIKGPNLAIVTACTTGLHCIGEAARLIEYGDADVMIAGGAESTVSPLGIGGFAAARALSQRNDDPATASRPWDKDRDGFVLGEGAGVMVLEEYEHAKARGAKIYAEIAGYGMSGDAYHMTAPLEDGDGARRCMLAALRNAGVNADQVNYLNAHGTSTPLGDLAETVAIKRAFGDHAKDIVVNSTKSMTGHLLGGAGGLESVFTVLAVHNQVSPPTINIFNQDPECDLDYCANEAREMKIDIALKNSFGFGGTNGTLVFKRV
>NZ_CP013457.1|WP_004197638.1|1356874_1357114_+|acyl-carrier-protein
MDNIEQRVKKIVAEQLGVAEAEIKNEASFVNDLGADSLDTVELVMALEDEFGMEIPDEEAEKITTVQQAIDYARANVKA
>NZ_CP013457.1|WP_038750341.1|1367881_1368781_+|GTPase-Era
MNAPAPTGFRCGMIAIVGRPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRTLDDAQYIFVDTPGFQTRHSTALNRSLNRAVTSTLTSVDAILFVIEAGRFGPDDQKVLDLIPPGTPTLLVANKLDRVSDKDTLYPFFQKMGELREFAEIVPLSAKHSEDIQRLMNTIKPYLPQGDAIYGEDDLTDRSSRFLAAEILREKVFRWTGDELPYTSTVVIDKFEEEGRLTRVFATILVERDSHKAMVIGKKGAKLKQISTEARQDMEKLFDGPVYLETFVKVRSGWADNEAGLRAYGYE
>NZ_CP013457.1|WP_186448572.1|1368800_1369628_+|DNA-repair-protein-RecO
MTDEADADPQPSIAPSTQPAPDAEKPARKPRRAAARTSEFRIAEQPGFVLHGYPYRETSLVVDVLTRDHGRIALVAKGAKRPHSALRGVLQTFQPLSLSWTGKSELRTLTGAEWVGGMLPLAGDALLCGFYVNELLVKFCAREDPHPPLFKHYLVTLTRLAHGEPPVQVLRSFERVLLRETGYAMSLKRTVARRAVEPDKLYVFDPERGVRDAGGDVPSHWPVIAGQTLLDMEEDDYHRAQTVAQSKTLMRFLLNTYLGGTPLATRQILIDLQNL
>NZ_CP013457.1|WP_038750344.1|1369624_1370398_+|pyridoxine-5'-phosphate-synthase
MSFFLTSPTAIELGVNIDHVATLRNARGTAYPDPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRPLLKTRMNLECAVTAEMLDIACEIGPHDACLVPEKRSELTTEGGLDVAGHFDAVRAACRQLADAGVRVSLFIDPDDAQIRAAHETGAPVIELHTGRYADAHGEAEQRREFERIAAGVDAGIALGLKVNAGHGLHYTNVQAIAALPGIAELNIGHAIVAHAVFVGWDNAVREMKAIMVAARVAALHGGR
>NZ_CP013457.1|WP_059584622.1|1370403_1370835_+|holo-ACP-synthase
MAIYGIGTDLVQVSRIAAVLARTDGRFAEKVLGPDELRVFRARRARSEARGIAFLATRFSAKEAFSKAIGLGMHWPMTWRALQTLNRPSGEPYVVASGELAAWLDARRITARVTVSDERDYAVTFVVAEAPDDVAAARSAAAS
>NZ_CP013457.1|WP_038750349.1|1370860_1371889_+|beta-N-acetylhexosaminidase
MKLTPGPVMLDVAGTTLTRDDARRLAHPQTGGVILFARHFESRAQLVALTDAIRAIRDDILIAVDHEGGRVQRFRTDGFTVLPAMRRLGELWDKDVLHATKAATAAGYVLASELRACGVDMSFTPVLDLDYGRSKVIGDRAFHRDPRVVALLAKSLNHGLALAGMANCGKHFPGHGFARADSHVALPTDDRPLDEILANDAAPYDWLGLSLSAVIPAHVIYTQVDARPAGFSRVWLQDVLRGRLGFPGAVFSDDLSMEAAREGGTLAQAAQAALDAGCDMVLICNQPDAAERVLDALRATTSRESLRRIKQMRPRGKALKWNKLMREPRYLRAQALLRSTFA
>NZ_CP013457.1|WP_038750351.1|1371944_1373342_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MPHALIVEDDPNSLSGLTALLAADGFSVDTATSLAEARGALARSIPDVVLVDLNLPDGSGFDLLQNLPQQQPNGSLPVIVLTGNATVESAIEGLRHGVWDYLLKPVNIPRLRSLLARIPRPYELIEEVQALRATLRRLGRFGSLVGRSDAIQHVYDMIEHNARTETAVLLWGEPGTGKEAAARTLHDLSRRRKGPFVAFDCRAAVQSPRNIETNGRAVESMLLGRERGAYTGVERRDPGVFEQASGGTLFLEEITALPLSLQEALLRALDSQNFMRVGGTIEIASDFRLIATTRRPAREAVANGTLREDLWLRLDAASIGLPPLRERDNDVIEIAEAFVDDLNRDARAAGLNITDKRAAPGFIRECLAYDWPGNVRELLERVRLAYDQSGDFIETLRAGDAYPQPGAALNGSSVQVRVGTPLADVEDLLIRATLDAVGGTRHRAATLLGISPKTLYNKLQRMKIG
>NZ_CP013457.1|WP_038750354.1|1373612_1374170_-|elongation-factor-P
MKTAQELRVGNVVMVGNDAWVVSKTEYNKSGRNAAVVKMKLKNLLTNAGQESVYKADDKFDIVVLDRKEVTYSYFADPMYVFMDADYNQYEVEAEMMGDALNYLEDGMTCEVVFYNEKAISVELPTILVREITYTEPAVKGDTSSGKVLKNAKLSTGFELQVPLFCNTGDKIEIDTRTNEYRSRA
>NZ_CP013457.1|WP_038750356.1|1374354_1375575_-|elongation-factor-P-maturation-arginine-rhamnosyltransferase-EarP
MTSSAPLTPPASALADIRPTDAAASAIACDIFCAVVDNFGDIGVCWRLARQLAAEHGWQVRIFVDDLATFARLQPAARPDAARQTVDGIVVEHWRAPAHAGDTLEIADVVIEAFACELPGAYVAAMARRARPPVWINLEYLSAEDWVCDFHLRPSPHPRYPLTKTFFFPGLGPGTGGVLKERDLDARRAAFEASGDARRAWWQSVARAPMPGPDATVVSLFAYENPALDALLEQWRDGGEPIALLVPEGRISASIARFFGVGSFGAGAHAARGSVAAHGLAFVAQPDYDLLLWASDVNFVRGEDSFVRAQWARRPFVWQIYPQADAAHLPKLDAALAHFNARVDHATRAATERFWHAWNGAGAPDWADFWRHRAALAARAASWADELAAVGGLAGNLANFAKTQLK
>NZ_CP013457.1|WP_060356890.1|1375800_1378119_+|excinuclease-ABC-subunit-UvrC
MTSPDAPESRFEPKPILAQLPHLPGVYRYYDVQDAVLYVGKARDLKKRVSSYFTKTQLSPRIAMMVTRIARIETTVTRSEAEALLLENNLIKALAPRYNILFRDDKSYPYLKLTGHEFPRMAYYRGAVDKKNQYFGPFPSAWAVRESIQILQRVFQLRTCEDSVFNNRTRPCLLHQIGRCSAPCVGAIGEEDYARDVDNASRFLLGRQNEVMGELERKMHAFAAELKFEQAAAVRNQMSSLAKVLHQQAIDVGGDSDVDILAVVAQGGRVCVNLAMVRGGRHLGDKAYFPTHVESALALAGDPGAQAGDEAGDDVGDEAGAGADAQARLAGDAATDAADAADAAGASENGGAARHVEASAQACADESVERSADAMAEAITEASRAAAIAEAGEAAQATEATEATEATEATEATEAAAPSDIGDDAAPQEADAAPLETEVLEAFVAQHYLGNRVPPILVASHAIANRELIDLLVEQAGHKVSVVRQPQGQKRAWLAMAEQNARLALARLLSEQGSQQARTRALAGVLGYESDDLAPLRIECFDISHTMGEATQASCVVYHHHKMQSSEYRRYNITGITPGDDYAAMRQVLTRRYEKMVEEAAAEASADEAAGIDGNAVHAAASAGRLPNIVLIDGGRGQVEIARQVFSELGLDIAMLVGVAKGEGRKVGLETLIFADGRAPLELGKESAALMLVAQIRDEAHRFAITGMRAKRAKTRQTSRLEELEGVGAKRRQRLLARFGGLRGVVAASVDELASVEGISRALAEQIYRQLH
>NZ_CP013457.1|WP_038750360.1|1378232_1378826_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MPFNFPIFLTWVRIVLIPLVVGVFYLPDTVLSADHRNLAAAAIFILAALTDWFDGYLARKWNQTSAFGAFLDPVADKLMVTAALLVLVQLARLDAAIALVIVGREIAISALREWMAHIGASKSVAVNSLGKFKTACQMIAIPMLLYYGRLPFGGGIAIDTRVWGEWLIYLAAVLTIWSMLYYMKLAWPQIRERGGAA

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Crispr_ID: NZ_CP013457_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013457_2

1398210-1398291

Orphan

Consensus_repeat	Method
TCGGCGCGCGCCGCGCGATCGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013457_2

>merge|NZ_CP013457|2|1398210-1398291|CRISPRCasFinder
TCGGCGCGCGCCGCGCGATCGTCAGGGCGTCGAGCGGGCGGCGCGGATGCGCGCGAGCTCGGCGCGCGCCGCGCGCTCGTCG

>NZ_CP013457|2|1|1398210-1398291|CRISPRCasFinder
TCGGCGCGCGCCGCGCGATCGTC	AGGGCGTCGAGCGGGCGGCGCGGATGCGCGCGAGC
TCGGCGCGCGCCGCGCGCTCGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013457.1\|WP_059584812.1\|1395456_1396362_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|184959
NZ_CP013457.1\|WP_060355700.1\|1397582_1398086_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP013457.1\|WP_038751124.1\|1393209_1394208_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP013457.1\|WP_038751104.1\|1405684_1406749_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340832
NZ_CP013457.1\|WP_060355684.1\|1389530_1389911_-\|copper-resistance-protein-CopC	unknown	unknown	gnl\|CDD\|377255
NZ_CP013457.1\|WP_059584801.1\|1407048_1408014_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP013457.1\|WP_082759333.1\|1408069_1408531_+\|DUF2214-family-protein	unknown	unknown	gnl\|CDD\|378336
NZ_CP013457.1\|WP_059584833.1\|1392085_1392358_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013457.1\|WP_038751131.1\|1386795_1388925_-\|membrane-protein	unknown	unknown	gnl\|CDD\|200552
NZ_CP013457.1\|WP_186448574.1\|1389907_1390840_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013457.1\|WP_038751112.1\|1399113_1399557_-\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|377298
NZ_CP013457.1\|WP_038751099.1\|1409946_1411095_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380565
NZ_CP013457.1\|WP_082759337.1\|1400656_1401466_+\|trehalose-phosphatase	unknown	unknown	gnl\|CDD\|182291
NZ_CP013457.1\|WP_038751101.1\|1408675_1409848_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP013457.1\|WP_038751126.1\|1390947_1391328_-\|DUF2946-domain-containing-protein	unknown	unknown	gnl\|CDD\|371400
NZ_CP013457.1\|WP_038751110.1\|1399583_1400240_-\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NZ_CP013457.1\|WP_060355687.1\|1396488_1397355_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP013457.1\|WP_038751106.1\|1403254_1405123_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013457.1\|WP_060355686.1\|1394755_1395268_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|224867
NZ_CP013457.1\|WP_060355688.1\|1401462_1402839_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	unknown	unknown	gnl\|CDD\|274112

Protein	Function_ID	Function_description	E-value
NZ_CP013457.1\|WP_059584812.1\|1395456_1396362_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|184959	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional.	2.11997e-139
NZ_CP013457.1\|WP_060355700.1\|1397582_1398086_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	4.89911e-61
NZ_CP013457.1\|WP_038751124.1\|1393209_1394208_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.78728e-14
NZ_CP013457.1\|WP_038751104.1\|1405684_1406749_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340832	cd03802, GT4_AviGT4-like, UDP-Glc:tetrahydrobiopterin alpha-glucosyltransferase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.	3.92809e-143
NZ_CP013457.1\|WP_060355684.1\|1389530_1389911_-\|copper-resistance-protein-CopC	gnl\|CDD\|377255	pfam04234, CopC, CopC domain. CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.	1.13588e-21
NZ_CP013457.1\|WP_059584801.1\|1407048_1408014_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	4.63299e-07
NZ_CP013457.1\|WP_082759333.1\|1408069_1408531_+\|DUF2214-family-protein	gnl\|CDD\|378336	pfam09980, DUF2214, Predicted membrane protein (DUF2214). This domain, found in various hypothetical bacterial proteins, has no known function.	3.36957e-36
NZ_CP013457.1\|WP_038751131.1\|1386795_1388925_-\|membrane-protein	gnl\|CDD\|200552	cd10926, CE4_u2, Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily. This family corresponds to a group of uncharacterized bacterial proteins with high sequence similarity to the catalytic domain of the six-stranded barrel rhizobial NodB-like proteins, which remove N-linked or O-linked acetyl groups from cell wall polysaccharides and belong to the larger carbohydrate esterase 4 (CE4) superfamily.	4.28255e-125
NZ_CP013457.1\|WP_060355687.1\|1396488_1397355_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.57854e-87
NZ_CP013457.1\|WP_038751112.1\|1399113_1399557_-\|copper-chaperone-PCu(A)C	gnl\|CDD\|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	2.99499e-37
NZ_CP013457.1\|WP_038751099.1\|1409946_1411095_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380565	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.	6.01336e-124
NZ_CP013457.1\|WP_060355686.1\|1394755_1395268_-\|GAF-domain-containing-protein	gnl\|CDD\|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	1.38264e-76
NZ_CP013457.1\|WP_038751101.1\|1408675_1409848_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	2.17141e-52
NZ_CP013457.1\|WP_038751126.1\|1390947_1391328_-\|DUF2946-domain-containing-protein	gnl\|CDD\|371400	pfam11162, DUF2946, Protein of unknown function (DUF2946). This family of proteins has no known function.	4.85649e-09
NZ_CP013457.1\|WP_038751110.1\|1399583_1400240_-\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	1.6746e-56
NZ_CP013457.1\|WP_038751106.1\|1403254_1405123_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.9971e-140
NZ_CP013457.1\|WP_082759337.1\|1400656_1401466_+\|trehalose-phosphatase	gnl\|CDD\|182291	PRK10187, PRK10187, trehalose-6-phosphate phosphatase; Provisional.	1.97234e-79
NZ_CP013457.1\|WP_060355688.1\|1401462_1402839_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	gnl\|CDD\|274112	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway; the significance of OtsA in this species is unclear (see Wolf, et al., ). [Cellular processes, Adaptations to atypical conditions].	0

>NZ_CP013457.1|WP_060355700.1|1397582_1398086_+|GNAT-family-N-acetyltransferase
MSTSTTAASSATAAPPPVALDWRWKPFDALTPREIYAILSARSDVFVVEQNCVYRDIDHADFDAWHLGAYDAQGRLACYLRVLPPDAAEPDVRIGRVLTTQPFRGMGLGNAMLAAALERVRAQWPGTPVSLHAQAHLQKFYGAFGFAPSSDVHDEDGIAHVWMRSIA
>NZ_CP013457.1|WP_060355687.1|1396488_1397355_+|pirin-family-protein
MKQIVGVYSAPRSHWVGDGFPARSLFSYDSHGVHLSPFLLLDYAGPARFEPTARRRGVGQHPHRGFETVTIVYQGEVDHRDSTGAGGHIGPGDVQWMTAAGGILHEEFHSEQFARNGGTLEMVQLWVNLPAKDKLSEPGYQTLLSDSIPSVELPDGAGRVRVIAGEFDGRRGPARTHTPLDVWDVRLEQGGRARFRAEAGRTLALVVLRGTALVNGEEVVREAQFVQFARDGSDVEIEANNDVTLLWLSGEPIDEPIVGYGPFVMNSEAQIRQAVDDFNAGRFGKMSA
>NZ_CP013457.1|WP_059584812.1|1395456_1396362_-|LysR-family-transcriptional-regulator
MRDLNDLYYFVQVVDHGGFAPAGRALNMPKSKLSRRIALLEERLGMRLIQRSTRRFAVTDTGQTYYAHCRAMLVEADAADEAVALMRAEPRGIVRVTCPVVLLDALVGDMVAAFMAECPLVEIHLEETNRRVDVVGEGIDVALRVRPPPLEDSDLVLRVLAERGQCLVASPRLLERAGAPRVPADLAALPSLALGLPQDEHVWNLHGPDGAHAAIRHRPRLVTRGMPALRAAAVAGVGVVQLPTMMVRDQLARGELRQLLPGWAPRREIVHAVFASRRGLLPSVRALLDFLAQRFAALEPD
>NZ_CP013457.1|WP_060355686.1|1394755_1395268_-|GAF-domain-containing-protein
MFALSETLPSSKPALYETLAAQARALVETETDVVANAANFSSLVYHSLDGLNWAGFYFYDGRELVVGPFQGKPACVRIALGKGVCGTAAQTRSTQVVRDVHTFAGHIACDSASQSEIVVPLVARDGTLIGVWDVDSPLIGRFDDDDAKGMEALCRVFVELAWENAVRRGE
>NZ_CP013457.1|WP_038751124.1|1393209_1394208_+|CPBP-family-intramembrane-metalloprotease
MEPIHSNSPAPSGRVSTSASMSTQTEPRGGRLRRFFFGRDGLRAPWGAALFVAIFAGAIAAFAFVSHRLVPMPVGDEALPVANGAAMEAMQLASVALATFLLAWIERRSPFSYGLQGSARASRFAGGVVCGFAAISALVFALWQAGLLRFDAPAIHGARAWEYAAVWAAMFVMTGIFEESLLRGYLLHKLARWLGFWWGAVLLSALFGVLHAMSPDESIMGLASAMLFGLVFCLSLWYTGSLWWAIGFHAAWDWGESYFYGAPDSGRLVEGVRLTAHPVGHALLSGGAAGPEGSVLVLPLLAIIALAMWGWWGRGARASRVALRGQGGGIVR
>NZ_CP013457.1|WP_059584833.1|1392085_1392358_-|hypothetical-protein
MKIFSTIIFSVMMLFSSYASADIVCKSGKINKIETDSNGNLVATILDASYSFSEREVFPLIYSAFSENRDFYIYGNTCYNGAPASHFAIR
>NZ_CP013457.1|WP_038751126.1|1390947_1391328_-|DUF2946-domain-containing-protein
MRRLLHRKIGSLLGLFAILMATLAPTVSHSLSNSRHSGTLPGAVCSARDGSNATPSDTSSSSEKAIHEQACAYCGLLAHVPVVPSATAEFAPENGARHTSSAAPVQPIRRRVPFTTAQPRAPPALS
>NZ_CP013457.1|WP_186448574.1|1389907_1390840_-|hypothetical-protein
MRTITPRGGLPALSTLVAPAAVAATLFAPCVAAAHAIAGNRVFPATMAVDDPGVGDELNLEFGHLKSQTDDGDAQGTNTTSLEWDKLITPSFALSLTGTYVNVNAPNGGSARGFDNFALGAKYRFYVSAAHEFMASVGVIAELGGTGSKAIADPHSALTPTLYVGKGFGDLPDALKYLRPFAVTATVGPRLTTSSADPDSLNWGVTLQYSLPYLQNFVRDVGLKAPFSNLIPVVEFPMNTCTGGPCAGHTTGTVNPGLLWLIRWGQFGVEAQIPVNRASGKGVGVLLQAHLYLDDVLPNSLGKPLFGKGE
>NZ_CP013457.1|WP_060355684.1|1389530_1389911_-|copper-resistance-protein-CopC
MNVTVIRPIHPACAAAAIVAGVVASSAAFAHVFPQSQTPSAGAEVPPPANVTIVFDGPLEPAFSALTVSDATGKPVSRAKATVAPNDAKTISVALPALAPGKYVVHWVAVASDGHRTQGDYSFKVK
>NZ_CP013457.1|WP_038751131.1|1386795_1388925_-|membrane-protein
MLVKSFRFFRTCLILLSLCFAILPGRAHAVSNQLLLLLPDNFTLPDPRVSAWLDAASEEGLQISIIYDSQFEQAGASLQQYQGLILPDQVHTVAADALVTAIQNYALNGGRVMMVYDFGALTSTGFYPVPQSRFSSMVGVSYVLYDSLGGNMIGLGPVTGMGSTLRALQIPPGKSMAWSTSGSTPTTAVKTSALVSVSASPGQVLYLQPSPSNPGGLSGYNHNAYFNYKTENGLASNISLDLGRISKGQQVKAGTYTATSTKSTSSSTKKTTGATALATTSPAATTDTLEGISGYVYGFLTYPSFVTQGTYSGTALLTSPNFGLVAGYNPYGSGGVLFVNMPLSYLEGQTDGMPLHGFLHYFTTNVLSMPHLSLEPRAQAGMVLNWHFCAEEMIQPAQYLKSLGIWNNGPFSIVVTAGPDDAAIGDGLGINLTNNTQAKQLMTYLLSKGHNIGSHGGWDHDYWGANASETDQSTFQQYLVLNHQAVQTVTGKPDVEWAAPEGNTPTWAVTWLESNGYSGYYFTGHTGMAQTRAYRNGALLNPGIWAFPVMPFGKYATFEEFQEFGVSTTDVTNWYEALMNFVVANRTTRLIYMHPLGASWYPGVLSTIFTYANTLIATGQYKWYTMDQLTQFDRKRLLVTWTATDTGSSWSFAASQPTSLQDVTWLLPKNAFQLPVVTGGSATVVTTDPTNWLVIAGAGTALAFTSAKL
>NZ_CP013457.1|WP_038751112.1|1399113_1399557_-|copper-chaperone-PCu(A)C
MTLKPKSLAALAALSLSLHAYAAGAASISAQNAWVRWLPNKLPAAGYVTLVNASDKPIDLVDVDSPEYGMTMLHQTVSNGSTQKMEMVDKLTIPARGKVDIAPGGYHFMLEEPKRAIKPGDTVHLRMQFSDGEKLDAPFVVKSPAAK
>NZ_CP013457.1|WP_038751110.1|1399583_1400240_-|SCO-family-protein
MPLPLFAARARAASPACARTTRVIRFAAACAAAAALAGCSPRGEPWRLTNVTSHLPDLTFSLTGEDGKPIDASAFRGRIALVYFGYTHCPDVCPETMARLMQVLALLGPDARGGVRILFVSVDPARDTPAAMRDYVGAFDAEHAYGLTGSERQIESLAKRYRVAYQMEKRDPNGNYEVTHSSAVYVFDAQGRARLLATDQDSPDAIAADLRRIIANRS
>NZ_CP013457.1|WP_082759337.1|1400656_1401466_+|trehalose-phosphatase
MRTFARRARPPAAILISESMQSVPLSLPLARTAFFLDFDGTLVDLAPTPDAIQVPPDVPALVDELRRLSHGAVAIVSGRGIGSIDAYLNLPDLPVAGLHGAERRDANGDTQRIGFDDPRLLRIERELAAVVERHPGMLLEIKGAALALHFRNAPEREGVARAAAERLVAAYPDAYVLQPGKMVFEIKPKGVDKGRAVAAFLNEPPFAGRMPVFAGDDLTDELGFAVVNANGGLSIKVGAGDTSARARVESVAAFREQLARWIDAGRALA
>NZ_CP013457.1|WP_060355688.1|1401462_1402839_+|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)
MSRLIIVSNRVAPISEGEPAAGGLAIGVYDALKETGGMWFGWSGEVVASGAPQIRVEEHGPVTFATIGLSRRDYDQYYRGFSNATLWPAFHYRADLIQFDRHEFEGYSRVNVWLAQQLVPLLRDDDVIWVHDYHLIPFAKALRAAGVKNRIGFFLHIPFPAAQVLVNVPPHRELVDALCAFDLLGFQTDTDLRAFFEYVEYEAGGAVDRAAHPARVDAFGRSLRAAAYPIGVYPDEIAALAKAGENGRAVKSLAASLRGRQLVMSVDRLDYSKGLVERFRAFEKLLEHETSFRNHVSFLQIAPSTRADLRAYQDIRRQLEGESGRINGRFAELDWAPILYIHRQYERPVLAALYRLARVGYVTPLRDGMNLVAKEYVSAQNPDDPGVLVLSRFAGAACELTGALIVNPIDIGGMADALSRALSMPLAERRARHADMLARLRENNVSVWRDNFLRDLGK
>NZ_CP013457.1|WP_038751106.1|1403254_1405123_-|ABC-transporter-ATP-binding-protein
MEALTPAQRNVYNAKLASYADRPLAFLFRYIRMHPVAHVIVLASVLAAVGCALGSQYAIKHLIDVLAAGRHHPGPLWGAFALLVGLIAADNLLWRVGGWVAAHTFVAVTGDLRRDLFQYLSGHSQTYYAEKQPGTLASRITATSNAIYTAENTMAWNVLPPCIAVMGAILMIIVVNPLMALGLLSCSGVLAIVLFKLAKRGSVRHHRFAARAAAVDGELVDVIGNMGLVRAFGMTLREQKRFGATVKAEMDARQQSLLYLEKLRLLHAVITAMLSAGLLGWALWLWDQGRATSGDIVLVSSLGFTILHGTRDLAVALVDVTQHVARLAEAVKTLLEPHGMPDRSDAIALAPRGGRVDFERVTFAYPHRRPILDHFDLHIEPGQRVGLIGKSGAGKSTVLALLQRFYDIQQGSIRIDGQDLGSITQESLRQSIALVPQDISLFHRSIYENIAYGRPEATHEEVLAAAREARCTEFIEAMPEGFETIVGDRGVKLSGGQRQRIAIARAILKDAPILLLDEATSALDSASEEAIQAALDRLMTGRTVIAIAHRLSTLRNFDRIIVMSAGKVIDDGSPDALRERPGLYRDLLAKQHGRHLPAPAPAPADGNGDDDSSASDDDERVA
>NZ_CP013457.1|WP_038751104.1|1405684_1406749_+|glycosyltransferase-family-4-protein
MRIAQIAPLHEAVPPKLYGGTERVVSYLTEALVEMGHDVTLFASGDSQTSAKLEAVWPQALRLDPTIRDVMAPHMLLLEEVRRRADEFDVLHFHIDYYPFPLFSRQPVPHLTTLHGRLDLPELQPIFNTFSDVPVVSISDNQRIPLSQANWLQTTYHGLPENLLKPIPDVKPGYLAFLGRISPEKRVDTAIRIAEQAGMPIKIAAKLDKADRAYYEEKIKPLFSLPHVEYIGEISEAEKAEFLGNAHALLFPIDWPEPFGLVMIEAMACGTPVIAFKRGSVPEVIENGVSGFVVEDELSAVAAVKRLATLPRERVRAAFDARFTSKVMARNYVKGYEELLRQKRRTVLREVNAG
>NZ_CP013457.1|WP_059584801.1|1407048_1408014_+|hypothetical-protein
MARTKPTRANPAPGSGVIFALRAIGLVLLARWLFSMSLMGYRASLSAMASSPWACINVVLMFLLLVLPGAQARAERPFHPLPQWLRQALRFFALLGFLFAVWSVGVFTWAAGWRRALHALTLSNGWLLAAPALYAAVVWMCRPRALWRTNVAARRYAIGRYAISLDTLTRTVVVWMESRKVGQYDARELSVRWPNGAEPQPSAASCSAVAGADAPGADVPVIDAPAAVPGSDAPVAAAQPDLAAQPGAAAPAAPPASTKTPSSARPAPPTGGRFARPKLELLWDSPAAVGHNRQIVMRTPLATEGDRVAARALDASLKQVA
>NZ_CP013457.1|WP_082759333.1|1408069_1408531_+|DUF2214-family-protein
MLTVRWLLAAVHLLAFGFALASIAARNRALKRVAASRQSADLPDVFRADAIWGVSALVLITTGIVRAFGGFEKGGEYYLHAPLFHLKMGALALILVLELIPMTGLIRWRVTARRAMLPDLARAPAYARIGHVQAMLVVAIVFAAAGMARGVGF
>NZ_CP013457.1|WP_038751101.1|1408675_1409848_-|FAD-binding-oxidoreductase
MHSNVVIVGGGVIGSATAYFLRTLDPGISVTVIERDPTYARASSALSAASIRQQFSTPLSIRMSLFGIEFLRSLGERLAVDGERPSIDLHEGGYLFLATPAGDATLRENHALQTSLGAQIRYLPRDALAATFPWLHADDLAAGCYGERGEGWFDGYGLVQALRRKARALGAQYVSADVTGARVDGRRVTQLLTADGRAFDCDAMVNAAGPWARSIAALVGVDLPVHARRRSIFNVTSPAVLPRCPLVIDPSGVYFRPEGASFICGAAPPPERDFDDLPLDDVDHALFDELIWPTLAHRVPQFEALRVARSWSGYYEYNVLDQNAIIGPHPDVDNCIFANGFSGHGLQQGPATGRGVAELIALGRYDSLDLSPLGFERVLEGRPIVEKNVV
>NZ_CP013457.1|WP_038751099.1|1409946_1411095_-|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MRLRSPLSSLALAAALACGATGAARAADDTPVKIGFAAPLTGVNAGYGKDLQNGVQLAIDDARAQKIKIAGKPARFELVVEDDQADPRIGVQAAQSLVDKKVSVVVGHFNSGTTIPASVVYDKAGVPVIDPAATNPVITSRGLANVFMVIATDGQNAGNAGRYAIDVSKAKRIAIVDDRTAFGQGEADEFDKAVKAAGGAIVAREYTSNQAVDFRAQITSLKSKNVDLIFFGGLDSLAANFIKQMKQLGLAAQFVGGGGVKDAEFIKIAGPAAEGAMAWEYGRPLDQLPQGKDFEARFKKRFGVDVLSYAQFGYDATWAAIRAMQAAGSTEPGAYQPALKKIDFEGITGRIAFGGDGSLKSGMSTLYQVKNGAWQTIVTKGG

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Crispr_ID: NZ_CP013457_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013457_3

1398482-1398564

Orphan

Consensus_repeat	Method
TCGGCGCGCGCCGCGCGATCGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013457_3

>merge|NZ_CP013457|3|1398482-1398564|CRISPRCasFinder
TCAGCGCGCCGAGCACGATCTGCGGCGGGATCGCCGCGACGACCATCAGGATGCGCCGCCCCGGCGCGAGCCGCGCGGGCGGC

>NZ_CP013457|3|2|1398482-1398564|CRISPRCasFinder
TCAGCGCGCCGAGCACGATCTGC	GGCGGGATCGCCGCGACGACCATCAGGATGCGCCGCC
CCGGCGCGAGCCGCGCGGGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013457.1\|WP_059584812.1\|1395456_1396362_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|184959
NZ_CP013457.1\|WP_060355700.1\|1397582_1398086_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP013457.1\|WP_038751124.1\|1393209_1394208_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP013457.1\|WP_038751104.1\|1405684_1406749_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340832
NZ_CP013457.1\|WP_060355684.1\|1389530_1389911_-\|copper-resistance-protein-CopC	unknown	unknown	gnl\|CDD\|377255
NZ_CP013457.1\|WP_059584801.1\|1407048_1408014_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP013457.1\|WP_082759333.1\|1408069_1408531_+\|DUF2214-family-protein	unknown	unknown	gnl\|CDD\|378336
NZ_CP013457.1\|WP_059584833.1\|1392085_1392358_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013457.1\|WP_038751131.1\|1386795_1388925_-\|membrane-protein	unknown	unknown	gnl\|CDD\|200552
NZ_CP013457.1\|WP_186448574.1\|1389907_1390840_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013457.1\|WP_038751112.1\|1399113_1399557_-\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|377298
NZ_CP013457.1\|WP_038751099.1\|1409946_1411095_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380565
NZ_CP013457.1\|WP_082759337.1\|1400656_1401466_+\|trehalose-phosphatase	unknown	unknown	gnl\|CDD\|182291
NZ_CP013457.1\|WP_038751101.1\|1408675_1409848_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP013457.1\|WP_038751126.1\|1390947_1391328_-\|DUF2946-domain-containing-protein	unknown	unknown	gnl\|CDD\|371400
NZ_CP013457.1\|WP_038751110.1\|1399583_1400240_-\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NZ_CP013457.1\|WP_060355687.1\|1396488_1397355_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP013457.1\|WP_038751106.1\|1403254_1405123_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013457.1\|WP_060355686.1\|1394755_1395268_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|224867
NZ_CP013457.1\|WP_060355688.1\|1401462_1402839_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	unknown	unknown	gnl\|CDD\|274112

Protein	Function_ID	Function_description	E-value
NZ_CP013457.1\|WP_059584812.1\|1395456_1396362_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|184959	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional.	2.11997e-139
NZ_CP013457.1\|WP_060355700.1\|1397582_1398086_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	4.89911e-61
NZ_CP013457.1\|WP_038751124.1\|1393209_1394208_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.78728e-14
NZ_CP013457.1\|WP_038751104.1\|1405684_1406749_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340832	cd03802, GT4_AviGT4-like, UDP-Glc:tetrahydrobiopterin alpha-glucosyltransferase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.	3.92809e-143
NZ_CP013457.1\|WP_060355684.1\|1389530_1389911_-\|copper-resistance-protein-CopC	gnl\|CDD\|377255	pfam04234, CopC, CopC domain. CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.	1.13588e-21
NZ_CP013457.1\|WP_059584801.1\|1407048_1408014_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	4.63299e-07
NZ_CP013457.1\|WP_082759333.1\|1408069_1408531_+\|DUF2214-family-protein	gnl\|CDD\|378336	pfam09980, DUF2214, Predicted membrane protein (DUF2214). This domain, found in various hypothetical bacterial proteins, has no known function.	3.36957e-36
NZ_CP013457.1\|WP_038751131.1\|1386795_1388925_-\|membrane-protein	gnl\|CDD\|200552	cd10926, CE4_u2, Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily. This family corresponds to a group of uncharacterized bacterial proteins with high sequence similarity to the catalytic domain of the six-stranded barrel rhizobial NodB-like proteins, which remove N-linked or O-linked acetyl groups from cell wall polysaccharides and belong to the larger carbohydrate esterase 4 (CE4) superfamily.	4.28255e-125
NZ_CP013457.1\|WP_060355687.1\|1396488_1397355_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.57854e-87
NZ_CP013457.1\|WP_038751112.1\|1399113_1399557_-\|copper-chaperone-PCu(A)C	gnl\|CDD\|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	2.99499e-37
NZ_CP013457.1\|WP_038751099.1\|1409946_1411095_-\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380565	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.	6.01336e-124
NZ_CP013457.1\|WP_060355686.1\|1394755_1395268_-\|GAF-domain-containing-protein	gnl\|CDD\|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	1.38264e-76
NZ_CP013457.1\|WP_038751101.1\|1408675_1409848_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	2.17141e-52
NZ_CP013457.1\|WP_038751126.1\|1390947_1391328_-\|DUF2946-domain-containing-protein	gnl\|CDD\|371400	pfam11162, DUF2946, Protein of unknown function (DUF2946). This family of proteins has no known function.	4.85649e-09
NZ_CP013457.1\|WP_038751110.1\|1399583_1400240_-\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	1.6746e-56
NZ_CP013457.1\|WP_038751106.1\|1403254_1405123_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.9971e-140
NZ_CP013457.1\|WP_082759337.1\|1400656_1401466_+\|trehalose-phosphatase	gnl\|CDD\|182291	PRK10187, PRK10187, trehalose-6-phosphate phosphatase; Provisional.	1.97234e-79
NZ_CP013457.1\|WP_060355688.1\|1401462_1402839_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	gnl\|CDD\|274112	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway; the significance of OtsA in this species is unclear (see Wolf, et al., ). [Cellular processes, Adaptations to atypical conditions].	0

>NZ_CP013457.1|WP_060355700.1|1397582_1398086_+|GNAT-family-N-acetyltransferase
MSTSTTAASSATAAPPPVALDWRWKPFDALTPREIYAILSARSDVFVVEQNCVYRDIDHADFDAWHLGAYDAQGRLACYLRVLPPDAAEPDVRIGRVLTTQPFRGMGLGNAMLAAALERVRAQWPGTPVSLHAQAHLQKFYGAFGFAPSSDVHDEDGIAHVWMRSIA
>NZ_CP013457.1|WP_060355687.1|1396488_1397355_+|pirin-family-protein
MKQIVGVYSAPRSHWVGDGFPARSLFSYDSHGVHLSPFLLLDYAGPARFEPTARRRGVGQHPHRGFETVTIVYQGEVDHRDSTGAGGHIGPGDVQWMTAAGGILHEEFHSEQFARNGGTLEMVQLWVNLPAKDKLSEPGYQTLLSDSIPSVELPDGAGRVRVIAGEFDGRRGPARTHTPLDVWDVRLEQGGRARFRAEAGRTLALVVLRGTALVNGEEVVREAQFVQFARDGSDVEIEANNDVTLLWLSGEPIDEPIVGYGPFVMNSEAQIRQAVDDFNAGRFGKMSA
>NZ_CP013457.1|WP_059584812.1|1395456_1396362_-|LysR-family-transcriptional-regulator
MRDLNDLYYFVQVVDHGGFAPAGRALNMPKSKLSRRIALLEERLGMRLIQRSTRRFAVTDTGQTYYAHCRAMLVEADAADEAVALMRAEPRGIVRVTCPVVLLDALVGDMVAAFMAECPLVEIHLEETNRRVDVVGEGIDVALRVRPPPLEDSDLVLRVLAERGQCLVASPRLLERAGAPRVPADLAALPSLALGLPQDEHVWNLHGPDGAHAAIRHRPRLVTRGMPALRAAAVAGVGVVQLPTMMVRDQLARGELRQLLPGWAPRREIVHAVFASRRGLLPSVRALLDFLAQRFAALEPD
>NZ_CP013457.1|WP_060355686.1|1394755_1395268_-|GAF-domain-containing-protein
MFALSETLPSSKPALYETLAAQARALVETETDVVANAANFSSLVYHSLDGLNWAGFYFYDGRELVVGPFQGKPACVRIALGKGVCGTAAQTRSTQVVRDVHTFAGHIACDSASQSEIVVPLVARDGTLIGVWDVDSPLIGRFDDDDAKGMEALCRVFVELAWENAVRRGE
>NZ_CP013457.1|WP_038751124.1|1393209_1394208_+|CPBP-family-intramembrane-metalloprotease
MEPIHSNSPAPSGRVSTSASMSTQTEPRGGRLRRFFFGRDGLRAPWGAALFVAIFAGAIAAFAFVSHRLVPMPVGDEALPVANGAAMEAMQLASVALATFLLAWIERRSPFSYGLQGSARASRFAGGVVCGFAAISALVFALWQAGLLRFDAPAIHGARAWEYAAVWAAMFVMTGIFEESLLRGYLLHKLARWLGFWWGAVLLSALFGVLHAMSPDESIMGLASAMLFGLVFCLSLWYTGSLWWAIGFHAAWDWGESYFYGAPDSGRLVEGVRLTAHPVGHALLSGGAAGPEGSVLVLPLLAIIALAMWGWWGRGARASRVALRGQGGGIVR
>NZ_CP013457.1|WP_059584833.1|1392085_1392358_-|hypothetical-protein
MKIFSTIIFSVMMLFSSYASADIVCKSGKINKIETDSNGNLVATILDASYSFSEREVFPLIYSAFSENRDFYIYGNTCYNGAPASHFAIR
>NZ_CP013457.1|WP_038751126.1|1390947_1391328_-|DUF2946-domain-containing-protein
MRRLLHRKIGSLLGLFAILMATLAPTVSHSLSNSRHSGTLPGAVCSARDGSNATPSDTSSSSEKAIHEQACAYCGLLAHVPVVPSATAEFAPENGARHTSSAAPVQPIRRRVPFTTAQPRAPPALS
>NZ_CP013457.1|WP_186448574.1|1389907_1390840_-|hypothetical-protein
MRTITPRGGLPALSTLVAPAAVAATLFAPCVAAAHAIAGNRVFPATMAVDDPGVGDELNLEFGHLKSQTDDGDAQGTNTTSLEWDKLITPSFALSLTGTYVNVNAPNGGSARGFDNFALGAKYRFYVSAAHEFMASVGVIAELGGTGSKAIADPHSALTPTLYVGKGFGDLPDALKYLRPFAVTATVGPRLTTSSADPDSLNWGVTLQYSLPYLQNFVRDVGLKAPFSNLIPVVEFPMNTCTGGPCAGHTTGTVNPGLLWLIRWGQFGVEAQIPVNRASGKGVGVLLQAHLYLDDVLPNSLGKPLFGKGE
>NZ_CP013457.1|WP_060355684.1|1389530_1389911_-|copper-resistance-protein-CopC
MNVTVIRPIHPACAAAAIVAGVVASSAAFAHVFPQSQTPSAGAEVPPPANVTIVFDGPLEPAFSALTVSDATGKPVSRAKATVAPNDAKTISVALPALAPGKYVVHWVAVASDGHRTQGDYSFKVK
>NZ_CP013457.1|WP_038751131.1|1386795_1388925_-|membrane-protein
MLVKSFRFFRTCLILLSLCFAILPGRAHAVSNQLLLLLPDNFTLPDPRVSAWLDAASEEGLQISIIYDSQFEQAGASLQQYQGLILPDQVHTVAADALVTAIQNYALNGGRVMMVYDFGALTSTGFYPVPQSRFSSMVGVSYVLYDSLGGNMIGLGPVTGMGSTLRALQIPPGKSMAWSTSGSTPTTAVKTSALVSVSASPGQVLYLQPSPSNPGGLSGYNHNAYFNYKTENGLASNISLDLGRISKGQQVKAGTYTATSTKSTSSSTKKTTGATALATTSPAATTDTLEGISGYVYGFLTYPSFVTQGTYSGTALLTSPNFGLVAGYNPYGSGGVLFVNMPLSYLEGQTDGMPLHGFLHYFTTNVLSMPHLSLEPRAQAGMVLNWHFCAEEMIQPAQYLKSLGIWNNGPFSIVVTAGPDDAAIGDGLGINLTNNTQAKQLMTYLLSKGHNIGSHGGWDHDYWGANASETDQSTFQQYLVLNHQAVQTVTGKPDVEWAAPEGNTPTWAVTWLESNGYSGYYFTGHTGMAQTRAYRNGALLNPGIWAFPVMPFGKYATFEEFQEFGVSTTDVTNWYEALMNFVVANRTTRLIYMHPLGASWYPGVLSTIFTYANTLIATGQYKWYTMDQLTQFDRKRLLVTWTATDTGSSWSFAASQPTSLQDVTWLLPKNAFQLPVVTGGSATVVTTDPTNWLVIAGAGTALAFTSAKL
>NZ_CP013457.1|WP_038751112.1|1399113_1399557_-|copper-chaperone-PCu(A)C
MTLKPKSLAALAALSLSLHAYAAGAASISAQNAWVRWLPNKLPAAGYVTLVNASDKPIDLVDVDSPEYGMTMLHQTVSNGSTQKMEMVDKLTIPARGKVDIAPGGYHFMLEEPKRAIKPGDTVHLRMQFSDGEKLDAPFVVKSPAAK
>NZ_CP013457.1|WP_038751110.1|1399583_1400240_-|SCO-family-protein
MPLPLFAARARAASPACARTTRVIRFAAACAAAAALAGCSPRGEPWRLTNVTSHLPDLTFSLTGEDGKPIDASAFRGRIALVYFGYTHCPDVCPETMARLMQVLALLGPDARGGVRILFVSVDPARDTPAAMRDYVGAFDAEHAYGLTGSERQIESLAKRYRVAYQMEKRDPNGNYEVTHSSAVYVFDAQGRARLLATDQDSPDAIAADLRRIIANRS
>NZ_CP013457.1|WP_082759337.1|1400656_1401466_+|trehalose-phosphatase
MRTFARRARPPAAILISESMQSVPLSLPLARTAFFLDFDGTLVDLAPTPDAIQVPPDVPALVDELRRLSHGAVAIVSGRGIGSIDAYLNLPDLPVAGLHGAERRDANGDTQRIGFDDPRLLRIERELAAVVERHPGMLLEIKGAALALHFRNAPEREGVARAAAERLVAAYPDAYVLQPGKMVFEIKPKGVDKGRAVAAFLNEPPFAGRMPVFAGDDLTDELGFAVVNANGGLSIKVGAGDTSARARVESVAAFREQLARWIDAGRALA
>NZ_CP013457.1|WP_060355688.1|1401462_1402839_+|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)
MSRLIIVSNRVAPISEGEPAAGGLAIGVYDALKETGGMWFGWSGEVVASGAPQIRVEEHGPVTFATIGLSRRDYDQYYRGFSNATLWPAFHYRADLIQFDRHEFEGYSRVNVWLAQQLVPLLRDDDVIWVHDYHLIPFAKALRAAGVKNRIGFFLHIPFPAAQVLVNVPPHRELVDALCAFDLLGFQTDTDLRAFFEYVEYEAGGAVDRAAHPARVDAFGRSLRAAAYPIGVYPDEIAALAKAGENGRAVKSLAASLRGRQLVMSVDRLDYSKGLVERFRAFEKLLEHETSFRNHVSFLQIAPSTRADLRAYQDIRRQLEGESGRINGRFAELDWAPILYIHRQYERPVLAALYRLARVGYVTPLRDGMNLVAKEYVSAQNPDDPGVLVLSRFAGAACELTGALIVNPIDIGGMADALSRALSMPLAERRARHADMLARLRENNVSVWRDNFLRDLGK
>NZ_CP013457.1|WP_038751106.1|1403254_1405123_-|ABC-transporter-ATP-binding-protein
MEALTPAQRNVYNAKLASYADRPLAFLFRYIRMHPVAHVIVLASVLAAVGCALGSQYAIKHLIDVLAAGRHHPGPLWGAFALLVGLIAADNLLWRVGGWVAAHTFVAVTGDLRRDLFQYLSGHSQTYYAEKQPGTLASRITATSNAIYTAENTMAWNVLPPCIAVMGAILMIIVVNPLMALGLLSCSGVLAIVLFKLAKRGSVRHHRFAARAAAVDGELVDVIGNMGLVRAFGMTLREQKRFGATVKAEMDARQQSLLYLEKLRLLHAVITAMLSAGLLGWALWLWDQGRATSGDIVLVSSLGFTILHGTRDLAVALVDVTQHVARLAEAVKTLLEPHGMPDRSDAIALAPRGGRVDFERVTFAYPHRRPILDHFDLHIEPGQRVGLIGKSGAGKSTVLALLQRFYDIQQGSIRIDGQDLGSITQESLRQSIALVPQDISLFHRSIYENIAYGRPEATHEEVLAAAREARCTEFIEAMPEGFETIVGDRGVKLSGGQRQRIAIARAILKDAPILLLDEATSALDSASEEAIQAALDRLMTGRTVIAIAHRLSTLRNFDRIIVMSAGKVIDDGSPDALRERPGLYRDLLAKQHGRHLPAPAPAPADGNGDDDSSASDDDERVA
>NZ_CP013457.1|WP_038751104.1|1405684_1406749_+|glycosyltransferase-family-4-protein
MRIAQIAPLHEAVPPKLYGGTERVVSYLTEALVEMGHDVTLFASGDSQTSAKLEAVWPQALRLDPTIRDVMAPHMLLLEEVRRRADEFDVLHFHIDYYPFPLFSRQPVPHLTTLHGRLDLPELQPIFNTFSDVPVVSISDNQRIPLSQANWLQTTYHGLPENLLKPIPDVKPGYLAFLGRISPEKRVDTAIRIAEQAGMPIKIAAKLDKADRAYYEEKIKPLFSLPHVEYIGEISEAEKAEFLGNAHALLFPIDWPEPFGLVMIEAMACGTPVIAFKRGSVPEVIENGVSGFVVEDELSAVAAVKRLATLPRERVRAAFDARFTSKVMARNYVKGYEELLRQKRRTVLREVNAG
>NZ_CP013457.1|WP_059584801.1|1407048_1408014_+|hypothetical-protein
MARTKPTRANPAPGSGVIFALRAIGLVLLARWLFSMSLMGYRASLSAMASSPWACINVVLMFLLLVLPGAQARAERPFHPLPQWLRQALRFFALLGFLFAVWSVGVFTWAAGWRRALHALTLSNGWLLAAPALYAAVVWMCRPRALWRTNVAARRYAIGRYAISLDTLTRTVVVWMESRKVGQYDARELSVRWPNGAEPQPSAASCSAVAGADAPGADVPVIDAPAAVPGSDAPVAAAQPDLAAQPGAAAPAAPPASTKTPSSARPAPPTGGRFARPKLELLWDSPAAVGHNRQIVMRTPLATEGDRVAARALDASLKQVA
>NZ_CP013457.1|WP_082759333.1|1408069_1408531_+|DUF2214-family-protein
MLTVRWLLAAVHLLAFGFALASIAARNRALKRVAASRQSADLPDVFRADAIWGVSALVLITTGIVRAFGGFEKGGEYYLHAPLFHLKMGALALILVLELIPMTGLIRWRVTARRAMLPDLARAPAYARIGHVQAMLVVAIVFAAAGMARGVGF
>NZ_CP013457.1|WP_038751101.1|1408675_1409848_-|FAD-binding-oxidoreductase
MHSNVVIVGGGVIGSATAYFLRTLDPGISVTVIERDPTYARASSALSAASIRQQFSTPLSIRMSLFGIEFLRSLGERLAVDGERPSIDLHEGGYLFLATPAGDATLRENHALQTSLGAQIRYLPRDALAATFPWLHADDLAAGCYGERGEGWFDGYGLVQALRRKARALGAQYVSADVTGARVDGRRVTQLLTADGRAFDCDAMVNAAGPWARSIAALVGVDLPVHARRRSIFNVTSPAVLPRCPLVIDPSGVYFRPEGASFICGAAPPPERDFDDLPLDDVDHALFDELIWPTLAHRVPQFEALRVARSWSGYYEYNVLDQNAIIGPHPDVDNCIFANGFSGHGLQQGPATGRGVAELIALGRYDSLDLSPLGFERVLEGRPIVEKNVV
>NZ_CP013457.1|WP_038751099.1|1409946_1411095_-|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MRLRSPLSSLALAAALACGATGAARAADDTPVKIGFAAPLTGVNAGYGKDLQNGVQLAIDDARAQKIKIAGKPARFELVVEDDQADPRIGVQAAQSLVDKKVSVVVGHFNSGTTIPASVVYDKAGVPVIDPAATNPVITSRGLANVFMVIATDGQNAGNAGRYAIDVSKAKRIAIVDDRTAFGQGEADEFDKAVKAAGGAIVAREYTSNQAVDFRAQITSLKSKNVDLIFFGGLDSLAANFIKQMKQLGLAAQFVGGGGVKDAEFIKIAGPAAEGAMAWEYGRPLDQLPQGKDFEARFKKRFGVDVLSYAQFGYDATWAAIRAMQAAGSTEPGAYQPALKKIDFEGITGRIAFGGDGSLKSGMSTLYQVKNGAWQTIVTKGG

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Crispr_ID: NZ_CP013457_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013457_4

3273724-3273811

Orphan

Consensus_repeat	Method
CGCGCGCCGCTCCCATCCGAAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013457_4

>merge|NZ_CP013457|4|3273724-3273811|CRISPRCasFinder
CGCGCGCCGCTCCCATCCGAAGCCGTCGCTCGGATGCCGAACGGACGCTGCGCTGACTTGTGCGCCGCGCCCGCTCCCATCCGAAGCC

>NZ_CP013457|4|3|3273724-3273811|CRISPRCasFinder
CGCGCGCCGCTCCCATCCGAAGCC	GTCGCTCGGATGCCGAACGGACGCTGCGCTGACTTGTGCG
CCGCGCCCGCTCCCATCCGAAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013457.1\|WP_059643480.1\|3278874_3280248_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP013457.1\|WP_060356360.1\|3268200_3268977_-\|L-iditol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|235925
NZ_CP013457.1\|WP_060356358.1\|3277040_3278465_-\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|198374
NZ_CP013457.1\|WP_038750884.1\|3271695_3272487_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_CP013457.1\|WP_038750855.1\|3269263_3269728_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP013457.1\|WP_059575164.1\|3285505_3286756_-\|efflux-RND-transporter-periplasmic-adaptor-BpeA	unknown	unknown	gnl\|CDD\|184990
NZ_CP013457.1\|WP_060356370.1\|3263391_3264336_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP013457.1\|WP_060356359.1\|3275566_3276610_+\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP013457.1\|WP_059581344.1\|3264448_3265777_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP013457.1\|WP_038751633.1\|3287173_3287809_+\|TetR-family-transcriptional-regulator-BpeR	unknown	unknown	gnl\|CDD\|182632
NZ_CP013457.1\|WP_060356361.1\|3267239_3268196_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
NZ_CP013457.1\|WP_038751627.1\|3282289_3285490_-\|efflux-RND-transporter-permease-BpeB	unknown	unknown	gnl\|CDD\|273335
NZ_CP013457.1\|WP_038751638.1\|3288808_3289168_-\|DUF427-domain-containing-protein	unknown	unknown	gnl\|CDD\|377265
NZ_CP013457.1\|WP_059581341.1\|3269810_3270782_+\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238502
NZ_CP013457.1\|WP_059581337.1\|3272683_3273532_-\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|131868
NZ_CP013457.1\|WP_060356362.1\|3265827_3267252_-\|D-tagatose-bisphosphate-aldolase,-class-II,-non-catalytic-subunit	unknown	unknown	gnl\|CDD\|377955
NZ_CP013457.1\|WP_038750858.1\|3270806_3271703_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213202
NZ_CP013457.1\|WP_060356848.1\|3288052_3288781_-\|carbon-monoxide-dehydrogenase	unknown	unknown	gnl\|CDD\|176853
NZ_CP013457.1\|WP_145986808.1\|3280345_3280651_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013457.1\|WP_038750861.1\|3273816_3274923_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260

Protein	Function_ID	Function_description	E-value
NZ_CP013457.1\|WP_059643480.1\|3278874_3280248_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	0
NZ_CP013457.1\|WP_060356360.1\|3268200_3268977_-\|L-iditol-2-dehydrogenase	gnl\|CDD\|235925	PRK07067, PRK07067, L-iditol 2-dehydrogenase.	2.0183e-165
NZ_CP013457.1\|WP_060356358.1\|3277040_3278465_-\|carbohydrate-kinase	gnl\|CDD\|198374	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases. This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	6.0974e-140
NZ_CP013457.1\|WP_038750884.1\|3271695_3272487_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	3.20871e-44
NZ_CP013457.1\|WP_038750855.1\|3269263_3269728_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	1.67676e-31
NZ_CP013457.1\|WP_059575164.1\|3285505_3286756_-\|efflux-RND-transporter-periplasmic-adaptor-BpeA	gnl\|CDD\|184990	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA.	1.02013e-114
NZ_CP013457.1\|WP_060356370.1\|3263391_3264336_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	7.49724e-73
NZ_CP013457.1\|WP_060356359.1\|3275566_3276610_+\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	9.97535e-84
NZ_CP013457.1\|WP_059581344.1\|3264448_3265777_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.15512e-81
NZ_CP013457.1\|WP_038751633.1\|3287173_3287809_+\|TetR-family-transcriptional-regulator-BpeR	gnl\|CDD\|182632	PRK10668, PRK10668, DNA-binding transcriptional repressor AcrR; Provisional.	3.02231e-65
NZ_CP013457.1\|WP_060356361.1\|3267239_3268196_-\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	7.70307e-73
NZ_CP013457.1\|WP_038751627.1\|3282289_3285490_-\|efflux-RND-transporter-permease-BpeB	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP013457.1\|WP_038751638.1\|3288808_3289168_-\|DUF427-domain-containing-protein	gnl\|CDD\|377265	pfam04248, NTP_transf_9, Domain of unknown function (DUF427). This domain contains a beta-tent fold.	1.03081e-36
NZ_CP013457.1\|WP_059581341.1\|3269810_3270782_+\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238502	cd01020, TroA_b, Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	1.27937e-105
NZ_CP013457.1\|WP_059581337.1\|3272683_3273532_-\|S-formylglutathione-hydrolase	gnl\|CDD\|131868	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. [Cellular processes, Detoxification].	2.56482e-172
NZ_CP013457.1\|WP_060356362.1\|3265827_3267252_-\|D-tagatose-bisphosphate-aldolase,-class-II,-non-catalytic-subunit	gnl\|CDD\|377955	pfam08013, Tagatose_6_P_K, Tagatose 6 phosphate kinase. Proteins in this family are tagatose 6 phosphate kinases.	0
NZ_CP013457.1\|WP_038750858.1\|3270806_3271703_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213202	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.	1.78688e-89
NZ_CP013457.1\|WP_060356848.1\|3288052_3288781_-\|carbon-monoxide-dehydrogenase	gnl\|CDD\|176853	cd05018, CoxG, Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	7.59328e-19
NZ_CP013457.1\|WP_038750861.1\|3273816_3274923_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0

>NZ_CP013457.1|WP_059581337.1|3272683_3273532_-|S-formylglutathione-hydrolase
MLELVSSHACHGGEQRFYRHESKTIGLPMKFSAYLPPQAAHGRVPALFYLAGLTCTEETFAIKAGAQRFAAQHGIALVAPDTSPRGAGVPGEADAWDFGVGAGFYVNATEAPWAAHWRMDSYVVDELREIATAGLPIDGARLGIFGHSMGGHGALVLALRNPHVYRSVSAFAPIAAPSRCPWGEKALSGYLGADRAAWKQYDASELVARAGAKRFDEGILIDQGLADQFLPTQLNPDVFEAACRAAGQPLTLRRHEGYDHGYYFISTFIADHIAHHARVLGR
>NZ_CP013457.1|WP_038750884.1|3271695_3272487_+|metal-ABC-transporter-permease
MFEYEFMINAFAAAGIVAVLAGVVGYFLVLRGQTFAGHALSHVGFTGATGAALFGLSPIWGMIGFTLAAGISMGALGERLAGRDVAIGVTLSVALGCGLLFLHFYTSYATQVTALLFGNVLGVSHATLVVLAAIGAVSLAALAAIARPLLFASLQPELAEAKGVSLRLVSILFLSICALAVAACTQIVGVLLVFTLLVGPAAAAQNLAARLSTGVWLAAAFALGQAWLGITLAYYTDWPTSFWITALSAAVYGASLVGRRRHA
>NZ_CP013457.1|WP_038750858.1|3270806_3271703_+|ABC-transporter-ATP-binding-protein
MTHPRHALELDHVTLALGGRTILRDASFAVEPGEFVGVLGPNGAGKTTLMRALLGLVPAQSGSIRVAGEPVARGNPAIGYMPQVRSALAGRRVRGRDFVATAADGHRWGLPHASAAIAADVDRVLELVGATALAKRPLSELSGGERQRLLLAQCLLGAPKLLLLDEPLISLDPNHQRGVVELVRRVQRELGITVLFSAHELNPLLNALDRVLYLGNGVAALGTVDEVITKPVLSRLYGSPIDVMRVNGRIFVMSGDVEVEKHDHGHEDEHDHDHGHGHDHAHGRGHARSHGGRRTHDV
>NZ_CP013457.1|WP_059581341.1|3269810_3270782_+|zinc-ABC-transporter-substrate-binding-protein
MTLAATSRAPLRALAPSSRPARSPLTLRSSPLLRAARALAAGAAALAFAGAAFAQNAAVKIVAAENFYGDVAKQIGGAHVAVSSVLSNPDQDPHLFEASPKVARELQRADLVIYNGADYDPWMAKLLAASKNAKRTIVVVAELVGRKAGDNPHLWYDPATMPAAARALAAALGSADPAHKAEYDANLARFVASMKPVDAKVAELRARYKGAPVTATEPVFGYMADAIGLDMRNQRFQLATMNNTEASPADVAAFENDLKKRQVRVLIYNSQAVEPMTKRMLKLAQDARVPSVSVTETQPAGKTFQQWMLAQLDALAAALGQRP
>NZ_CP013457.1|WP_038750855.1|3269263_3269728_+|transcriptional-repressor
MASTHSLAARLSRADAFAAEHGLAWTPLRRQVYEHVLAAGRPIGAYDLLAELEPQRGRVPPTTVYRALEFLVEHGFIHRIESKNAFIACCEISKPHEGQFLICEECGETVEIPGGDLAKQLSASPPAHGFEVHRQVVELTGLCGQCKTKHAPHG
>NZ_CP013457.1|WP_060356360.1|3268200_3268977_-|L-iditol-2-dehydrogenase
MRLQRKVAILTGAASGIGEAVARRYLAEGAHCVLVDLKPADGSLARLVDAHPGRAVAVPADVTRRDDIARIIATAVERFGGVDILFNNAALFDMRPLLDDSWDVFDRLFAVNVKGMFFLMQAVAQRMVEQGRGGKIINMSSQAGRRGEALVSHYCATKAAVLSYTQSAALALAKHRINVNGIAPGVVDTPMWEQVDALFARYENRPLGEKKRLVGEAVPLGRMGVPDDLAGAALFLASADADYITAQTLNVDGGNWMS
>NZ_CP013457.1|WP_060356361.1|3267239_3268196_-|sugar-kinase
MAAIVVAGELLAEFVAAKRGQGFDAPGEFAGPFPSGAPAIFADQAARMGASVAYAGCVGRDAFGDAIVARLAGHGVDVARIRRAARPTGIACVAYRADGGRQFVFSIEGSASALLEPADVDASMFAGCRYFHVMGSSLTSENAIAAVKRGVIEAARVGAKISFDPNVRAEMLAFEPMRAALHELLDACHLFLPSEVDLPYFCGPQPAERAIAGLLATYPLLERVVLKRGAAGSAAFDRTGSVAAPAYATAEVDPTGAGDCFGGTFVAGAIAGLPVATALMRANAAGALAVSRIGPMEGNSMPDDIDRFLAERGVRCAA
>NZ_CP013457.1|WP_060356362.1|3265827_3267252_-|D-tagatose-bisphosphate-aldolase,-class-II,-non-catalytic-subunit
MRGVNAIAQRSRASGHVQLLREIFDANRAGRASGIYSVCSAHRLVLEAALEAARADESPLLVEATCNQVNHRGGYTGMTPADFRRDVDSLAREAGFPAQALILGGDHLGPNPWRHLAARDAMREARAMVAAYVAAGFTKIHLDASMACADDAAPLPDATIAERAAQLCAAAEEAAAGAGVSPVYVVGTEVPTPGGEVSAAQTETANDPDDEANPPARHARGGAAADDGAFARIDVTRAASVSATLAAHRDAFARHGLLDAWSRVIAIVAQPGVDFDDRRVLDYDPVRAAELGASVLRAPGLVFEAHSTDYQTEGALAALVRDHFAILKVGPALTFALREALFALTYIEDALFDDASERSQLRDVIDAAMRERPEYWAPYYRGDALAQRLARQFSYSDRIRYYWLQPAVAAALDRLLDNLARRAPPETLVAQWLPDAYAACRRGELAREPVAWVRHRIRDVISRYARACAMQQGA
>NZ_CP013457.1|WP_059581344.1|3264448_3265777_-|sugar-ABC-transporter-substrate-binding-protein
MQRKPFIAAAARVAAGAALASSALAAHAATLTIATLNNPDMIELKKLSSAFEKANPDIRLNWVILEENVLRQRATTDITTGSGQFDVMAIGTYEAPQWGKRGWLAPMTNLSADYDLNDVIKTARDSLSYNGQLYALPFYVESSMTFYRKDLFAAKGLKMPEQPTYDQIAEFADKLTDRASGTYGICLRGKAGWGENMAYVSTVVNTFGGRWFDENWNAQLTSPEWKKAINFYVNLLKKNGPPGASSNGFNENLTLTASGKCAMWIDATVAAGMLYNRQQSQVADKIGFAAAPVAVTPKGSHWLWAWALAIPKTSKQQDAAKKFIAWATSKQYVEMAGKDEGWASVPPGTRQSTYQRAEYKAAAPFSDFVLKAIQTADPNDPSLKKVPYTGVQYVGIPEFQSFGTVVGQAIAGAVAGQMSVDQALAAGQAAADRAVRQAGYRK
>NZ_CP013457.1|WP_060356370.1|3263391_3264336_-|sugar-ABC-transporter-permease
MRHLRLPLAHSAPLGDAGPAADERARGKPARWLVTPSVAVLFLWMAIPLAMTIWFSLTRYNLLNPDVKGFAGLDNYRFLATDPSFLPAIWHTLALIGSVLAITVAGGVLMAVLFDRKFYGQGVARLFAIAPFFVMPTVSALIWKNMILHPVYGLVARAMRALGMQPIDWFAQYPLASIVMIVAWQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPIAMFFYITLPHLKRAIAVVVMMETIFLLSIFAEIYTTTGGGPGDTTTNLSYLIYALGLQQFDVGLASAGGILAVVLANVVSFFLVRMLARNLKGEYEA
>NZ_CP013457.1|WP_038750861.1|3273816_3274923_-|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MKTKAAIAWKAGEPLTIEEVDLDGPRAGEVLIEVKATGICHTDYYTLSGADPEGIFPAILGHEGAGVVVDVGPGVGTVKKGDHVIPLYTPECRECKFCLSRKTNLCQKIRATQGRGLMPDATSRFSIGGKPIFHYMGTSTFSNYIVVPEIAVAKVREDAPFDKICYIGCGVTTGVGAVVYSAKVEAGANVVVFGLGGIGLNVIQGARMVGADKIIGVDINPKRVELAKKFGMTHFVNPNEVENVVDHIVQLTDGGADYSFECIGNVKVMRQALECTHKGWGQSFIIGVAAAGEEISTRPFQLVTGREWKGSAFGGARGRTDVPKIVDWYMEGKLNIDDLITHTLPLEKINDGFDLMKTGESIRSVVLY
>NZ_CP013457.1|WP_060356359.1|3275566_3276610_+|GlxA-family-transcriptional-regulator
MAAEIPLRHRTTTVDVVIYPGFKAIEAVGVINVFDYANARLAAAGLPPVYDLQIAAPAKGAVKSDTLIVLEATKAIDTLAVPDTAIVVGARDIERALRDTSMLVGWCRDVAGRIGRMVGLCSGCFFLAESGMLDGRRATTHWSVTHTLQARYPAVKVEPDAIFVREGNVWTSAGVTAGLDLALAMVEEDLGRDIALAVARDLVIYLKRPGGQSQFSVYLASQMTAHSSIRDVQDWILNSLGERLSVAQLAKRAAMSERNFIRVFVRETGYRPAEFIEIARLEKARRMLEQEELPLKTVAVRSGFHSDDQLRRVFVRRLGVTPGAYRERFSGTGVRDAAASEGADFTD
>NZ_CP013457.1|WP_060356358.1|3277040_3278465_-|carbohydrate-kinase
MRFLGIDLGTGSLKLAIVDGDGRVRASSGAAYAVATPQPGWAEIDVAAWWRALVDAARRLPEHERAQVRAIGLSGQMHGVVLADACGRALRPAMLWPDARATALVARWPASPNPVSPGMAGPLLAWLAAHEPDVLRAARWALQPKDWLRVALGGDVASDPSDACATALAGPDGDWDDALIASLGLPRALFAAPRASDARCGALSADAARALGLPADVALATGAGDTPCAALGSGLARDGDALLTTGTGGQIVVLTAQGAAPRAGLHRYRAAGGARYYTMAAMQNVGIALESARGWLVYPDWRAAYDDAFGAHAAAQISFLPYLTGERSPWMNPAARGGWLGLSLGDSRGALMRAAFEGVAFALRAGLDAIRADGSPVRALRLAGGGSVDPRWRQLLADALDVELHAVDGADAAARGAALLGGVAAEHWRATELVALGPGATCVAKPGHDAALAARHARFVDLYRRTEAWFDTGI
>NZ_CP013457.1|WP_059643480.1|3278874_3280248_+|purine-permease
MQSNTVHPCDELLPSGKLLTLGLQHVLVMYAGAVAVPLIVGGALKLPKDQIAFLISADLFACGIATLIQTLGVWIFGIRLPVIMGCTFAAVGPMIAIGTNPGLGILDIFGSTIAAGAIGIVLAPMIGKLLRFFPPVVVGTVISVIGLSLMEVGINWAAGGVGNPNYGDPVYLGLSLLVLALILLINKFGRGFVANISVLLGMVAGFAIAFAAGRVNTDGVAAAPWVGFVAPFHFGLPHFDPLAIATMVIVMFVTFIESTGMFLAVGDMVERPVDQDTLVRGLRVDGLGTLIGGIFNSFPHTSFSQNVGLIGVTGVKSRFVCATGGMILVLLGLFPKMAQLVASVPPFVLGGAGIVMFGMVAANGVKVLSKVDFVRNHHNLFIVAVSIGLGLVPVVSPNFFSKLPAALAPILHSGILLASVSAVVLNLVFNGMKGEQDARCDIRRAGRDFDGRPADLH
>NZ_CP013457.1|WP_145986808.1|3280345_3280651_-|hypothetical-protein
MKKPRVLRNAGFLFGGRDPIPAAVAPRRRCNVGAAAARASGTPVCSVGASTAARGENEKRRETSRVMKAGLLAGFSPRASRSGVVVRFAARGAVRRAIATR
>NZ_CP013457.1|WP_038751627.1|3282289_3285490_-|efflux-RND-transporter-permease-BpeB
MAKFFIDRPIFAWVIAIILMLAGVAAIFTLPIAQYPTIAPPSIQITANYPGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQNKLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRINGVGTVTLFGSQYAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGTVLQATITEQTLLQTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSSYFPHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATILKPIPQGHHEEKKGFFGWFNRTFNASRDKYHVGVHHVIKRSGRWLIIYLAVIVAVGLLFVRLPKSFLPDEDQGLMFVIVQTPSGSTQETTARTLANISDYLLTQEKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSANQKVQALIGRMFGRYAGYKDALVIPFNPPSIPELGTAAGFDFELTDSAGLGHDALMAARNQLLGMAAKDPTLQGVRPNGLNDTPQYKVNIDREKANALGVTASAIDQTFSIAWASSYVNNFLDTDGRIKKVYVQADAPFRMSPEDLNIWYVRNGSGGMVPFSAFATGHWTYGSPKLERYNGISAMEIQGQAAPGKSTGQAMAAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATMRGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQQTEKMGPIEAALEASRLRLRPILMTSLAFILGVLPLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKVRAVFSGEKEDADEALRLAHEHMHRDEKPEHGDDAGKKD
>NZ_CP013457.1|WP_059575164.1|3285505_3286756_-|efflux-RND-transporter-periplasmic-adaptor-BpeA
MRVERVPYRLITVATAAVFLAACGKKESAPPPQTPEVGVVTVQPQSVPVVSELPGRTSAYLVAQVRARVDGIVLRREFTEGGDVKAGQRLYKIDPAPYVAQLNSAKATLAKAQANLATQNALVARYKVLVAANAVSKQQYDDAVAAQGQAAADVGSGKAAVDTAQINLGYTDVVSPITGRVGISQVTPGAYVQASQATLMSTVQQLDPVYVDLTQSSLDGLKLRQDIQSGRIKTEGPGAAKVTLILEDGKPYSEQGKLQFSDVTVDQTTGSVTIRAIFPNKQRVLLPGMFVRARIEEGVNDNAFLVPQIGVTHDPKGQAIAMIVDEKGKVASRVLTTSGTQGQNWVVEGGLQAGDRVIVQGIDKVRPGMSVKTADAQLQAASGAAQAGASPAQAAAASAAASGAAPSSAAAASSAQ
>NZ_CP013457.1|WP_038751633.1|3287173_3287809_+|TetR-family-transcriptional-regulator-BpeR
MARRTKEEALATRDRILDAAEHVFFEKGVSHTSLADIAQHAGVTRGAIYWHFASKSELFDAMFDRVLLPIDELKADTGAPHADPLGRIREILIWCLLGVARDPQLRRVFSILFMKCEYVADMGPLLQRNREGMRDALRNIEADLAQGVANGQLPADLDTWRATLMLHTLVSGFVRDMLMLPGEIDAERHAEKLVDGCFDMLRTSPAMRKDG
>NZ_CP013457.1|WP_060356848.1|3288052_3288781_-|carbon-monoxide-dehydrogenase
MELNDALCIPLAPSVVWDALQDLALVRASLDHCESFSRLARGEYALALTVPLGPLRARYDVRAHVVSERHDEPEHTRRTLNFRARADGIGALRGQIDVVLAPADDAPDAIRGEPATRIEYAVWATASGPLSELPGRQIQNALHELADDFFTEFCEVVQAKHGLAPNRARDGAPRRQHVFLRPAGFTGIARRAHAQHLGGALTGRAASALHHRESNPVPLWAWAAMIFFVALLLYVARWFNGG
>NZ_CP013457.1|WP_038751638.1|3288808_3289168_-|DUF427-domain-containing-protein
MSDAAGHRIEIEPNRHRVRVIHRGITYADSLAAYTLRESGLPDVQYLPRGDVNMSRLAPSDRVTRCERKGPATYFHLHTEDGVIENAAWSYEEPPEIADAIRHYVAFDAACVDRIDVTS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013457_1	1.1\|1367187\|32\|NZ_CP013457\|PILER-CR	1367187-1367218	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	344259-344290	6	0.812
NZ_CP013457_1	1.1\|1367187\|32\|NZ_CP013457\|PILER-CR	1367187-1367218	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1298387-1298418	6	0.812
NZ_CP013457_1	1.1\|1367187\|32\|NZ_CP013457\|PILER-CR	1367187-1367218	32	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	468408-468439	7	0.781
NZ_CP013457_1	1.1\|1367187\|32\|NZ_CP013457\|PILER-CR	1367187-1367218	32	NZ_CP021408	Celeribacter manganoxidans strain DY25 plasmid pDY25-D, complete sequence	34721-34752	7	0.781
NZ_CP013457_1	1.1\|1367187\|32\|NZ_CP013457\|PILER-CR	1367187-1367218	32	NZ_CP018075	Streptomyces venezuelae strain NRRL B-65442 plasmid, complete sequence	75166-75197	7	0.781
NZ_CP013457_2	2.1\|1398233\|35\|NZ_CP013457\|CRISPRCasFinder	1398233-1398267	35	AP017627	Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome	105449-105483	7	0.8
NZ_CP013457_1	1.1\|1367187\|32\|NZ_CP013457\|PILER-CR	1367187-1367218	32	NC_012528	Deinococcus deserti VCD115 plasmid 3, complete sequence	121570-121601	8	0.75
NZ_CP013457_2	2.1\|1398233\|35\|NZ_CP013457\|CRISPRCasFinder	1398233-1398267	35	NZ_CP024425	Paracoccus yeei strain TT13 plasmid pTT13-3, complete sequence	101086-101120	8	0.771
NZ_CP013457_2	2.1\|1398233\|35\|NZ_CP013457\|CRISPRCasFinder	1398233-1398267	35	NZ_CP051544	Paracoccus sanguinis strain OM2164 plasmid pPspOM44, complete sequence	8723-8757	8	0.771
NZ_CP013457_1	1.1\|1367187\|32\|NZ_CP013457\|PILER-CR	1367187-1367218	32	NZ_KY349138	Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence	5935-5966	9	0.719
NZ_CP013457_1	1.1\|1367187\|32\|NZ_CP013457\|PILER-CR	1367187-1367218	32	NZ_CP039697	Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence	575951-575982	9	0.719
NZ_CP013457_1	1.1\|1367187\|32\|NZ_CP013457\|PILER-CR	1367187-1367218	32	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	445946-445977	9	0.719
NZ_CP013457_3	3.1\|1398505\|37\|NZ_CP013457\|CRISPRCasFinder	1398505-1398541	37	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	134286-134322	12	0.676

1. spacer 1.1|1367187|32|NZ_CP013457|PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacgtga---gggccgcgctcgaagccgtgccg	CRISPR spacer
---gcgtgagctgggccgcgctcgataccgtgccg	Protospacer
   .*****   ************* .********

2. spacer 1.1|1367187|32|NZ_CP013457|PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacgtga---gggccgcgctcgaagccgtgccg	CRISPR spacer
---gcgtgagctgggccgcgctcgataccgtgccg	Protospacer
   .*****   ************* .********

3. spacer 1.1|1367187|32|NZ_CP013457|PILER-CR matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 7, identity: 0.781

ttgacgtgagggccgcgctcgaagccgtgccg	CRISPR spacer
tcgagcagatggccgcgctcgaagccctgctg	Protospacer
*.**   ** **************** ***.*

4. spacer 1.1|1367187|32|NZ_CP013457|PILER-CR matches to NZ_CP021408 (Celeribacter manganoxidans strain DY25 plasmid pDY25-D, complete sequence) position: , mismatch: 7, identity: 0.781

---ttgacgtgagggccgcgctcgaagccgtgccg	CRISPR spacer
gcttcgac---cgggccgcgctggaagccctgccg	Protospacer
   *.***    ********** ****** *****

5. spacer 1.1|1367187|32|NZ_CP013457|PILER-CR matches to NZ_CP018075 (Streptomyces venezuelae strain NRRL B-65442 plasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ttgacgtgagggccgcgctcgaag---ccgtgccg	CRISPR spacer
tcgacctgatggccgcgctcgaagcgtccgtc---	Protospacer
*.*** *** **************   ****

6. spacer 2.1|1398233|35|NZ_CP013457|CRISPRCasFinder matches to AP017627 (Pleomorphomonas sp. SM30 plasmid pSM30-1 DNA, complete genome) position: , mismatch: 7, identity: 0.8

agggcgtcga-gcgggcggcgcggatgcgcgcgagc	CRISPR spacer
-ccacgtcggcgcgggcggcgcggatgcggtcgagc	Protospacer
   .*****. ******************  *****

7. spacer 1.1|1367187|32|NZ_CP013457|PILER-CR matches to NC_012528 (Deinococcus deserti VCD115 plasmid 3, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacgtgagggccgcgctcgaagccgtgccg	CRISPR spacer
tggacctgagtgccgcgctcgaagcccaggga	Protospacer
* *** **** ***************  *  .

8. spacer 2.1|1398233|35|NZ_CP013457|CRISPRCasFinder matches to NZ_CP024425 (Paracoccus yeei strain TT13 plasmid pTT13-3, complete sequence) position: , mismatch: 8, identity: 0.771

agggcgtcgagcgggcggcgcggatgcgcgcgagc	CRISPR spacer
ggggcgccgggcgggcggcgcggatggcggcaaga	Protospacer
.*****.**.****************   **.**

9. spacer 2.1|1398233|35|NZ_CP013457|CRISPRCasFinder matches to NZ_CP051544 (Paracoccus sanguinis strain OM2164 plasmid pPspOM44, complete sequence) position: , mismatch: 8, identity: 0.771

agggcgtcgagcgggcggcgcggatgcgcgcgagc	CRISPR spacer
ggggcgccgggcgggcggcgcggatggcggcaagg	Protospacer
.*****.**.****************   **.**

10. spacer 1.1|1367187|32|NZ_CP013457|PILER-CR matches to NZ_KY349138 (Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgtgagggccgcgctcgaagccgtgccg	CRISPR spacer
cccaactgaggggcgcgctcgaagacgtgatg	Protospacer
.. *  ****** *********** **** .*

11. spacer 1.1|1367187|32|NZ_CP013457|PILER-CR matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgtgagggccgcgctcgaagccgtgccg	CRISPR spacer
cggtgttcggggccgcgctcgacgccttgccg	Protospacer
. *   * .************* *** *****

12. spacer 1.1|1367187|32|NZ_CP013457|PILER-CR matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgtgagggccgcgctcgaagccgtgccg-	CRISPR spacer
cctccgtgagggccgcggtcgaggccg-gcgac	Protospacer
..  ************* ****.**** ** .

13. spacer 3.1|1398505|37|NZ_CP013457|CRISPRCasFinder matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 12, identity: 0.676

ggcgggatcgccgcgacgaccatcaggatgcgccgcc	CRISPR spacer
tactcccccgccgcgacggccatcacgatgcgcccga	Protospacer
 .*    .**********.****** ********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

199564 : 221955

Stx2-converting_phage(29.41%)

integrase,transposase

attL 191897:191914|attR 233693:233710

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
191897:191914	attL	NA	NA	NA	NA
WP_060356268.1\|199564_200491_+	AAA family ATPase	Q6UAZ2	Ralstonia_phage	1.9e-27	36.1
WP_060356269.1\|200487_201852_+	type II secretory pathway protein	NA	NA	NA	NA
WP_060356270.1\|202614_203394_+	hypothetical protein	A0A1W5LU59	Ralstonia_phage	3.5e-35	41.5
WP_176373495.1\|203760_204348_+\|integrase	tyrosine-type recombinase/integrase	A0A0S2SYQ7	Pseudomonas_phage	1.4e-44	50.6
WP_059645390.1\|204388_204733_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2I6TCA4	Escherichia_phage	6.3e-13	42.9
WP_080471805.1\|204713_205055_+	helix-turn-helix domain-containing protein	A0A088CD40	Shigella_phage	1.2e-16	52.1
WP_157130939.1\|205210_205570_-	hypothetical protein	NA	NA	NA	NA
WP_059584212.1\|205715_207269_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.7e-151	55.0
WP_059584214.1\|207299_207644_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.7e-40	70.4
WP_100185218.1\|207640_208045_-\|transposase	transposase	NA	NA	NA	NA
WP_060356788.1\|208460_209531_+	ATP-binding protein	NA	NA	NA	NA
WP_100185219.1\|210121_211209_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.2e-43	36.4
WP_157130940.1\|212471_212636_-	hypothetical protein	NA	NA	NA	NA
WP_082745138.1\|212797_213460_-	Eco29kI family restriction endonuclease	NA	NA	NA	NA
WP_060355681.1\|213456_214680_-	DNA cytosine methyltransferase	A7XXH6	Thermus_virus	2.6e-24	26.8
WP_082745137.1\|214684_215098_-	DNA mismatch endonuclease Vsr	I6NSG0	Burkholderia_phage	2.7e-34	50.0
WP_059645603.1\|215272_215506_-	hypothetical protein	NA	NA	NA	NA
WP_060355680.1\|215973_217050_-	DUF3396 domain-containing protein	A9YX32	Burkholderia_phage	2.3e-154	94.5
WP_059645600.1\|217052_217505_-	VRR-NUC domain-containing protein	Q8W6S1	Burkholderia_virus	8.9e-31	54.7
WP_082759332.1\|217762_218305_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	5.1e-49	56.4
WP_100185225.1\|218640_219458_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	8.6e-08	35.0
WP_059671102.1\|219625_220030_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.2e-05	27.8
WP_059584214.1\|220026_220371_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.7e-40	70.4
WP_059584212.1\|220401_221955_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.7e-151	55.0
233693:233710	attR	NA	NA	NA	NA

DBSCAN-SWA_2

482387 : 537724

Burkholderia_phage(28.57%)

protease,plate,integrase,transposase

attL 482070:482084|attR 493692:493706

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
482070:482084	attL	NA	NA	NA	NA
WP_038754999.1\|482387_482921_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	2.2e-20	49.0
WP_060355889.1\|483208_484420_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	4.9e-108	50.3
WP_100185222.1\|484514_485558_+	hypothetical protein	NA	NA	NA	NA
WP_082759372.1\|485740_486019_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_060355888.1\|486029_487835_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_100185223.1\|487992_489057_+	hypothetical protein	NA	NA	NA	NA
WP_145986713.1\|489068_489986_+	hypothetical protein	NA	NA	NA	NA
WP_059670723.1\|490022_491243_+\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	1.2e-234	96.6
WP_060356404.1\|491239_491596_+	hypothetical protein	NA	NA	NA	NA
WP_100185224.1\|492470_493685_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_060356402.1\|494027_494375_+	hypothetical protein	NA	NA	NA	NA
493692:493706	attR	NA	NA	NA	NA
WP_060356401.1\|494515_496810_+	AAA family ATPase	NA	NA	NA	NA
WP_100185225.1\|497993_498811_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	8.6e-08	35.0
WP_082759382.1\|499985_500471_+	glycine zipper family protein	NA	NA	NA	NA
WP_060355933.1\|500574_501546_+	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	5.3e-57	41.6
WP_060355934.1\|501622_502618_+	YqaJ viral recombinase family protein	A6XMH8	Bacillus_virus	5.7e-54	39.9
WP_060355935.1\|502668_503595_+	hypothetical protein	NA	NA	NA	NA
WP_060355936.1\|503591_503990_+	hypothetical protein	NA	NA	NA	NA
WP_082759383.1\|504069_505212_+	hypothetical protein	NA	NA	NA	NA
WP_060355937.1\|505263_506073_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_060355938.1\|506182_506482_+	hypothetical protein	NA	NA	NA	NA
WP_060355939.1\|506483_507122_+	hypothetical protein	NA	NA	NA	NA
WP_172820412.1\|507099_507429_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060355940.1\|507616_509413_+	hypothetical protein	A0A1L7N0M1	Ralstonia_phage	7.8e-54	33.8
WP_060355941.1\|509484_510141_+	hypothetical protein	NA	NA	NA	NA
WP_038714378.1\|510562_510847_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_060355942.1\|510892_513073_+	N-6 DNA methylase	NA	NA	NA	NA
WP_082759384.1\|513069_514245_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_060355943.1\|514301_517625_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	3.6e-52	28.1
WP_060355944.1\|517709_518837_+	DNA repair exonuclease	NA	NA	NA	NA
WP_060355951.1\|518836_521479_+	AAA family ATPase	NA	NA	NA	NA
WP_060355945.1\|521577_522792_-	DUF3396 domain-containing protein	E5E3X7	Burkholderia_phage	3.0e-134	63.5
WP_082759385.1\|522814_523579_-	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	2.1e-56	55.0
WP_060355946.1\|523575_524094_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	5.5e-53	58.8
WP_186448556.1\|524221_525934_-	TIGR04141 family sporadically distributed protein	NA	NA	NA	NA
WP_145986714.1\|527760_528333_-	hypothetical protein	NA	NA	NA	NA
WP_082759386.1\|528495_529992_-	hypothetical protein	B2ZXU0	Ralstonia_phage	6.6e-06	35.8
WP_082759387.1\|530059_530323_-	hypothetical protein	NA	NA	NA	NA
WP_082759388.1\|530397_530985_-	hypothetical protein	NA	NA	NA	NA
WP_060355948.1\|531104_531458_-	hypothetical protein	NA	NA	NA	NA
WP_145986715.1\|533848_535009_+\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	3.5e-220	95.9
WP_145986716.1\|535005_535491_+	hypothetical protein	A9YX16	Burkholderia_phage	4.3e-07	38.1
WP_038746362.1\|535595_536381_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_038746364.1\|536377_537724_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_3

627310 : 634829

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059671102.1\|627310_627715_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.2e-05	27.8
WP_059584214.1\|627711_628056_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.7e-40	70.4
WP_059584212.1\|628086_629640_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.7e-151	55.0
WP_100185332.1\|629682_630803_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.3e-78	54.0
WP_060356410.1\|630940_633016_+	molybdopterin oxidoreductase family protein	A0A077SK27	Escherichia_phage	1.1e-54	26.3
WP_038754507.1\|633155_634829_+	long-chain fatty acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	5.3e-36	27.2

DBSCAN-SWA_4

682225 : 690277

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_186448558.1\|682225_683323_+	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	5.5e-42	33.9
WP_145986720.1\|683332_684166_+	hypothetical protein	NA	NA	NA	NA
WP_082759217.1\|684162_685008_+	AAA family ATPase	NA	NA	NA	NA
WP_186448559.1\|685166_686249_+	hypothetical protein	NA	NA	NA	NA
WP_082759219.1\|686272_686707_+	very short patch repair endonuclease	V5UTF4	Oenococcus_phage	1.6e-16	42.5
WP_059671102.1\|687080_687485_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.2e-05	27.8
WP_059584214.1\|687481_687826_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.7e-40	70.4
WP_059584212.1\|687856_689410_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.7e-151	55.0
WP_060356339.1\|689452_690277_-	hypothetical protein	A0A1S6L1B6	Ralstonia_phage	1.8e-13	29.1

DBSCAN-SWA_5

887142 : 896795

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038753329.1\|887142_889092_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.4e-144	49.6
WP_038753330.1\|889355_890486_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.7e-22	27.2
WP_060355480.1\|890517_892554_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	S4VT78	Pandoravirus	6.4e-52	32.2
WP_059646131.1\|893111_893927_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	7.4e-36	32.5
WP_060355481.1\|893989_894673_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	4.4e-05	26.0
WP_060355482.1\|894669_895197_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_038753335.1\|895232_896795_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	3.3e-24	31.3

DBSCAN-SWA_6

1277545 : 1286144

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059584551.1\|1277545_1278949_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	9.4e-79	38.5
WP_082717752.1\|1278980_1279904_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	6.7e-17	27.8
WP_038745594.1\|1279962_1280955_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	5.9e-27	30.6
WP_038745592.1\|1281026_1281344_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_038745590.1\|1281612_1282515_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	3.9e-54	40.2
WP_060356870.1\|1282604_1283897_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_059584558.1\|1284075_1284999_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	5.4e-43	35.9
WP_082759541.1\|1285304_1286144_-	alpha/beta hydrolase	A7XCB7	Tanapox_virus	2.0e-20	28.0

DBSCAN-SWA_7

1737493 : 1825808

uncultured_Caudovirales_phage(29.03%)

plate,tail,protease,tRNA,head,capsid,lysis,integrase

attL 1779586:1779608|attR 1811605:1811627

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038745062.1\|1737493_1738075_+\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	6.7e-07	31.4
WP_059574558.1\|1738131_1739073_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA
WP_038745067.1\|1739408_1740104_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_038745070.1\|1740216_1741752_+	NCS1 family nucleobase:cation symporter-1	NA	NA	NA	NA
WP_060355290.1\|1741762_1742683_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_038745073.1\|1742828_1743779_+	allantoinase PuuE	NA	NA	NA	NA
WP_038745137.1\|1743778_1744300_+	2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase	NA	NA	NA	NA
WP_060355306.1\|1744555_1745569_+	allantoicase	NA	NA	NA	NA
WP_038745075.1\|1745565_1746078_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_038745077.1\|1746822_1748016_-	urate hydroxylase PuuD	NA	NA	NA	NA
WP_038745079.1\|1748065_1748419_-	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_060355289.1\|1748966_1750379_+	8-oxoguanine deaminase	NA	NA	NA	NA
WP_100185262.1\|1750433_1750772_+	hypothetical protein	NA	NA	NA	NA
WP_010104452.1\|1750702_1751632_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_186448576.1\|1751680_1752016_+	hypothetical protein	NA	NA	NA	NA
WP_082759161.1\|1752105_1752372_+	hypothetical protein	NA	NA	NA	NA
WP_038745088.1\|1752403_1752613_-	dodecin domain-containing protein	NA	NA	NA	NA
WP_060820695.1\|1752704_1753643_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_059574562.1\|1753782_1754226_-	hypothetical protein	NA	NA	NA	NA
WP_038745095.1\|1754596_1755028_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_060355287.1\|1755212_1756409_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_038745099.1\|1756522_1757203_-	PspA/IM30 family protein	NA	NA	NA	NA
WP_059608726.1\|1757329_1757575_+	hypothetical protein	NA	NA	NA	NA
WP_038745101.1\|1757725_1760245_+	penicillin-binding protein 1A	NA	NA	NA	NA
WP_038744680.1\|1760693_1761149_-	DUF3574 domain-containing protein	NA	NA	NA	NA
WP_038744679.1\|1761668_1762700_-	threonine/serine dehydratase	NA	NA	NA	NA
WP_038744677.1\|1762767_1763985_-	acetylornithine deacetylase	NA	NA	NA	NA
WP_145986755.1\|1764028_1764748_-	hypothetical protein	NA	NA	NA	NA
WP_038744674.1\|1764692_1765649_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_186448577.1\|1766085_1769655_-	transcription-repair coupling factor	NA	NA	NA	NA
WP_038744672.1\|1769675_1770386_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_038744671.1\|1770426_1770915_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_038744668.1\|1771429_1771957_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_038744667.1\|1772034_1772583_-	peroxiredoxin	NA	NA	NA	NA
WP_038744665.1\|1772781_1774140_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_004199523.1\|1774207_1774933_-	two-component system response regulator OmpR	W8CYM9	Bacillus_phage	8.1e-34	36.7
WP_009904927.1\|1775020_1775203_+	hypothetical protein	NA	NA	NA	NA
WP_038744664.1\|1775202_1775499_+	hypothetical protein	NA	NA	NA	NA
WP_060355305.1\|1775698_1777111_+	DUF1800 domain-containing protein	NA	NA	NA	NA
WP_059574593.1\|1777193_1778441_+	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_059671475.1\|1778457_1779294_-	presqualene diphosphate synthase HpnD	NA	NA	NA	NA
1779586:1779608	attL	NA	NA	NA	NA
WP_060355286.1\|1779758_1780781_+\|integrase	site-specific integrase	A0A1B1P9F9	Acinetobacter_phage	2.3e-66	46.0
WP_060355304.1\|1780777_1781080_-	hypothetical protein	NA	NA	NA	NA
WP_060355285.1\|1781630_1781960_-	hypothetical protein	NA	NA	NA	NA
WP_060355283.1\|1782879_1783959_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A2H4JDI2	uncultured_Caudovirales_phage	1.3e-48	38.4
WP_059584705.1\|1783985_1784330_+\|head	head decoration protein	NA	NA	NA	NA
WP_082717483.1\|1784363_1785389_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	2.8e-109	59.1
WP_060355282.1\|1785392_1785683_+	hypothetical protein	NA	NA	NA	NA
WP_060355281.1\|1785684_1786215_+\|tail	phage tail protein	A0A2H4JBV1	uncultured_Caudovirales_phage	9.2e-11	28.8
WP_060355280.1\|1786204_1786738_+	hypothetical protein	Q9JML9	Wolbachia_phage	1.1e-22	41.1
WP_060355279.1\|1786740_1787421_+\|plate	phage baseplate assembly protein V	E5FFH5	Burkholderia_phage	8.1e-20	31.6
WP_145986757.1\|1787536_1788340_+	hypothetical protein	NA	NA	NA	NA
WP_059643767.1\|1788401_1788599_+	hypothetical protein	NA	NA	NA	NA
WP_060355278.1\|1788595_1788940_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.8e-23	49.1
WP_060355277.1\|1788936_1789830_+\|plate	baseplate J/gp47 family protein	D5LGZ3	Escherichia_phage	1.1e-48	41.0
WP_059643775.1\|1789822_1790398_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	2.7e-32	48.4
WP_060355276.1\|1790385_1792191_+\|tail	tail fiber protein	A4JWS9	Burkholderia_virus	4.1e-151	67.5
WP_060355275.1\|1792203_1792890_+\|tail	tail fiber assembly protein	E5E3Q6	Burkholderia_phage	1.2e-58	58.6
WP_060355274.1\|1792953_1794123_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	1.6e-161	72.9
WP_060355273.1\|1794133_1794637_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	3.3e-42	51.2
WP_145986758.1\|1794985_1796245_+	hypothetical protein	NA	NA	NA	NA
WP_038777205.1\|1796488_1796791_+\|tail	phage tail assembly protein	V5YST8	Pseudomonas_phage	2.5e-05	37.2
WP_060355271.1\|1796878_1799278_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	4.0e-69	34.4
WP_060355270.1\|1799286_1800168_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	1.3e-30	36.7
WP_024430935.1\|1800142_1800349_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	6.9e-15	59.7
WP_060355269.1\|1800358_1801411_+	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	5.9e-78	44.5
WP_004533694.1\|1801486_1801681_+	hypothetical protein	NA	NA	NA	NA
WP_060355268.1\|1801673_1802171_+	lysozyme	A4JX20	Burkholderia_virus	1.8e-69	80.6
WP_060355267.1\|1802170_1802716_+\|lysis	lysis protein	Q8W6S5	Burkholderia_virus	1.4e-75	89.5
WP_060355266.1\|1802859_1803648_+	DNA adenine methylase	Q8W6S4	Burkholderia_virus	3.8e-146	93.1
WP_060355265.1\|1803683_1804427_-	immunity 52 family protein	A4PE26	Ralstonia_virus	4.7e-37	43.3
WP_076893424.1\|1804423_1805023_-	hypothetical protein	NA	NA	NA	NA
WP_100185266.1\|1805364_1805874_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	2.1e-20	40.9
WP_100185267.1\|1805870_1806296_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	2.7e-13	45.0
WP_082745164.1\|1806355_1806637_-	hypothetical protein	NA	NA	NA	NA
WP_059580888.1\|1806633_1807101_-	hypothetical protein	C7BGE3	Burkholderia_phage	1.2e-49	62.3
WP_145986759.1\|1808039_1809026_+	RNA-directed DNA polymerase	Q7M2A9	Enterobacteria_phage	4.8e-13	24.8
WP_145986760.1\|1809028_1810375_+	ATP-binding protein	NA	NA	NA	NA
WP_145986761.1\|1810892_1811180_-	hypothetical protein	NA	NA	NA	NA
WP_145986762.1\|1811692_1811884_-	hypothetical protein	NA	NA	NA	NA
1811605:1811627	attR	NA	NA	NA	NA
WP_059671474.1\|1812122_1812584_+	MEKHLA domain-containing protein	NA	NA	NA	NA
WP_038744658.1\|1812863_1813487_-	phospholipase D family protein	NA	NA	NA	NA
WP_038744656.1\|1813677_1814787_-	class II histone deacetylase	A0A2K9L2T7	Tupanvirus	2.7e-36	30.6
WP_059580686.1\|1814833_1816021_-	MFS transporter	NA	NA	NA	NA
WP_038744653.1\|1816051_1817107_-	porin	NA	NA	NA	NA
WP_038744650.1\|1817442_1818588_+	response regulator transcription factor	NA	NA	NA	NA
WP_060355872.1\|1818682_1819672_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_060355871.1\|1820082_1820532_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_100185339.1\|1820625_1821789_-	glycerate kinase	NA	NA	NA	NA
WP_038744644.1\|1822239_1823586_+	trigger factor	NA	NA	NA	NA
WP_038744642.1\|1823722_1824376_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	6.3e-54	57.5
WP_038744641.1\|1824536_1825808_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.4e-134	59.0

DBSCAN-SWA_8

1928337 : 1940067

uncultured_Mediterranean_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060355847.1\|1928337_1930716_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	1.4e-42	37.0
WP_006026979.1\|1930808_1931135_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_081989624.1\|1931166_1931769_+	recombination protein RecR	NA	NA	NA	NA
WP_038749138.1\|1931824_1933030_+	CoA transferase	NA	NA	NA	NA
WP_059642947.1\|1933135_1933897_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.3e-62	52.7
WP_060355873.1\|1933893_1934874_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	7.6e-35	48.9
WP_038749144.1\|1934885_1935758_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.3e-05	34.3
WP_038749147.1\|1935769_1936858_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	3.0e-32	35.4
WP_059669906.1\|1936865_1937642_+	3'-5' exonuclease	R9ZX90	Cellulophaga_phage	2.2e-05	31.2
WP_059580817.1\|1937732_1938593_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_038749154.1\|1938669_1940067_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	8.9e-29	25.4

DBSCAN-SWA_9

2432899 : 2502799

Klosneuvirus(18.18%)

coat,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060355977.1\|2432899_2435767_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	2.0e-144	38.6
WP_038751293.1\|2435853_2436735_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.9e-69	47.9
WP_060355976.1\|2436806_2437421_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_060355975.1\|2437510_2439904_-	CHASE2 domain-containing protein	NA	NA	NA	NA
WP_060355974.1\|2439914_2441285_-	FecR domain-containing protein	NA	NA	NA	NA
WP_004193573.1\|2441281_2441986_-	response regulator transcription factor	NA	NA	NA	NA
WP_038751300.1\|2442310_2442697_-	hypothetical protein	NA	NA	NA	NA
WP_004193727.1\|2443008_2443239_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_038751302.1\|2443386_2444424_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_060355973.1\|2444436_2445471_-	inositol 2-dehydrogenase	NA	NA	NA	NA
WP_038751425.1\|2445463_2446345_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_060355972.1\|2446586_2447636_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060355971.1\|2447736_2448882_+	ABC transporter permease	NA	NA	NA	NA
WP_059583075.1\|2448894_2449695_+	sugar ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-09	25.2
WP_038751311.1\|2449708_2451706_+	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
WP_060355970.1\|2451716_2453732_+	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	NA	NA	NA
WP_060355969.1\|2454691_2455495_+	5-deoxy-glucuronate isomerase	NA	NA	NA	NA
WP_038751317.1\|2455707_2456412_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-09	32.3
WP_060355968.1\|2456408_2458625_-	branched-chain amino acid ABC transporter ATP-binding protein/permease	A0A2R8FFL6	Cedratvirus	3.6e-08	26.9
WP_060355967.1\|2458617_2459553_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_059583054.1\|2459557_2460010_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_038751325.1\|2460218_2461367_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_038751326.1\|2461582_2461918_+	YbjQ family protein	NA	NA	NA	NA
WP_038751328.1\|2462062_2462599_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_060355966.1\|2462753_2464310_-	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	5.1e-09	24.1
WP_100185280.1\|2465019_2466618_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_060356917.1\|2466752_2467718_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_145986775.1\|2467797_2468148_+	hypothetical protein	NA	NA	NA	NA
WP_060356919.1\|2468119_2470744_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	9.3e-80	39.5
WP_038751335.1\|2471827_2473048_+	CoA transferase	NA	NA	NA	NA
WP_038751336.1\|2474185_2474395_-	ornithine acetyltransferase	NA	NA	NA	NA
WP_038751337.1\|2474659_2476369_+\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	7.7e-184	56.4
WP_038751338.1\|2476688_2477165_-	NUDIX hydrolase	A0A2I6PFL2	Proteus_phage	6.7e-21	42.0
WP_038751339.1\|2477183_2477570_-	hypothetical protein	NA	NA	NA	NA
WP_060356419.1\|2477812_2479858_-	glycoside hydrolase family 3 protein	NA	NA	NA	NA
WP_060356418.1\|2480008_2480869_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_060356417.1\|2480911_2482282_-	cytochrome-c peroxidase	NA	NA	NA	NA
WP_059671127.1\|2482515_2484099_+	acid phosphatase	NA	NA	NA	NA
WP_038751343.1\|2484489_2485683_+	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_059641676.1\|2485779_2486412_-	response regulator transcription factor	NA	NA	NA	NA
WP_060356415.1\|2486412_2488488_-	response regulator	A0A1V0SGR3	Hokovirus	1.1e-11	26.4
WP_059671128.1\|2488902_2489868_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_060356414.1\|2489883_2492301_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_060356413.1\|2492345_2493185_-	molecular chaperone	NA	NA	NA	NA
WP_060356412.1\|2493202_2493736_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_038751350.1\|2493817_2494378_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_038751433.1\|2494431_2494977_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_038751435.1\|2495804_2496698_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_038751352.1\|2497118_2498384_+	MFS transporter	NA	NA	NA	NA
WP_059583002.1\|2498428_2499373_+	amidohydrolase family protein	NA	NA	NA	NA
WP_186448532.1\|2499502_2499769_-	hypothetical protein	NA	NA	NA	NA
WP_038751354.1\|2499873_2500155_+	H-NS histone family protein	NA	NA	NA	NA
WP_100185282.1\|2500274_2501495_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	1.1e-232	96.1
WP_038751355.1\|2501942_2502206_-	hypothetical protein	NA	NA	NA	NA
WP_161788678.1\|2502565_2502799_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_10

2507476 : 2558774

uncultured_Caudovirales_phage(60.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038751359.1\|2507476_2508712_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.5e-37	40.5
WP_081989887.1\|2508966_2509686_-	hypothetical protein	NA	NA	NA	NA
WP_038751361.1\|2509694_2512718_-	hypothetical protein	NA	NA	NA	NA
WP_060355380.1\|2513743_2516611_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.0e-31	23.8
WP_038751363.1\|2517136_2517631_-	hypothetical protein	NA	NA	NA	NA
WP_060355379.1\|2517608_2520950_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_060355378.1\|2521058_2523467_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_082759190.1\|2523463_2524057_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_059671134.1\|2524053_2524632_-	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_060355377.1\|2524747_2525584_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_060355376.1\|2525586_2528385_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.7e-26	24.2
WP_059582968.1\|2528906_2529173_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_060355387.1\|2529196_2530615_+	hypothetical protein	NA	NA	NA	NA
WP_060355375.1\|2530660_2532511_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_145986778.1\|2532618_2533209_+	hypothetical protein	NA	NA	NA	NA
WP_145986779.1\|2533781_2534453_-	hypothetical protein	NA	NA	NA	NA
WP_052145136.1\|2535594_2536464_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_060355371.1\|2536654_2536870_-	hypothetical protein	NA	NA	NA	NA
WP_060820863.1\|2537230_2537620_-	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_038751380.1\|2537632_2538295_-	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_038751381.1\|2538340_2539423_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_060355370.1\|2539419_2541897_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_100185286.1\|2541928_2544337_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.2e-26	25.0
WP_060355368.1\|2544408_2545461_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_060355367.1\|2545534_2546599_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_038751390.1\|2546598_2548488_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_038751442.1\|2548518_2549097_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_060355366.1\|2549083_2550100_-	ImpE/SciE family protein	NA	NA	NA	NA
WP_060355365.1\|2550096_2550798_-	TagK domain-containing protein	NA	NA	NA	NA
WP_060355364.1\|2551317_2554059_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	6.7e-81	32.0
WP_038751399.1\|2554092_2554647_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_082759189.1\|2554679_2556236_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_059582918.1\|2556327_2556813_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_038751405.1\|2556902_2557406_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_060355363.1\|2557427_2558774_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_11

2584434 : 2625613

Burkholderia_virus(91.3%)

tail,portal,head,capsid,lysis,terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060355386.1\|2584434_2585106_-	SOS response-associated peptidase family protein	Q8W6R8	Burkholderia_virus	1.5e-127	93.7
WP_060355359.1\|2585191_2585833_+	hypothetical protein	Q8W6R9	Burkholderia_virus	8.8e-109	91.0
WP_060355358.1\|2585938_2586421_+	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_060355357.1\|2586417_2586705_+	hypothetical protein	NA	NA	NA	NA
WP_060355356.1\|2586790_2587726_-	hypothetical protein	C7BGE2	Burkholderia_phage	4.5e-77	50.2
WP_060355355.1\|2587787_2588330_-\|lysis	lysis protein	A4JX21	Burkholderia_virus	1.7e-65	79.3
WP_060355385.1\|2588329_2588821_-	lysozyme	Q6JIK8	Burkholderia_virus	1.2e-86	96.9
WP_004552929.1\|2588813_2589026_-\|holin	class II holin gp23	Q8W6S7	Burkholderia_virus	6.6e-29	100.0
WP_060355354.1\|2589068_2589812_-	hypothetical protein	Q8W6S8	Burkholderia_virus	4.0e-105	73.3
WP_060355353.1\|2589811_2590120_-	hypothetical protein	Q8W6S9	Burkholderia_virus	5.4e-40	69.6
WP_060355352.1\|2590116_2593428_-\|tail	phage tail protein	Q8W6T0	Burkholderia_virus	0.0e+00	93.9
WP_060355351.1\|2593424_2594009_-\|tail	tail assembly protein	Q8W6T1	Burkholderia_virus	5.4e-97	95.9
WP_038738267.1\|2594005_2594758_-	C40 family peptidase	A4JX14	Burkholderia_virus	5.3e-145	96.8
WP_060355350.1\|2594806_2595490_-\|tail	phage minor tail protein L	Q8W6T3	Burkholderia_virus	4.8e-129	96.5
WP_060355349.1\|2595486_2596896_-\|tail	tail fiber domain-containing protein	A4JX12	Burkholderia_virus	4.6e-227	81.9
WP_060355348.1\|2596904_2597243_-\|tail	phage tail protein	Q8W6T5	Burkholderia_virus	7.8e-56	91.9
WP_060355347.1\|2597239_2601304_-\|tail	phage tail tape measure protein	Q8W6T6	Burkholderia_virus	0.0e+00	86.5
WP_060355346.1\|2601319_2601604_-	DUF4035 domain-containing protein	Q8W6T7	Burkholderia_virus	3.8e-40	91.5
WP_060355384.1\|2601603_2602068_-\|tail	phage tail protein	A4JX08	Burkholderia_virus	4.2e-60	74.7
WP_060355345.1\|2602094_2602550_-	hypothetical protein	Q8W6T9	Burkholderia_virus	5.0e-74	95.3
WP_060355344.1\|2602612_2602960_-	hypothetical protein	A4JX06	Burkholderia_virus	5.0e-50	85.2
WP_060355343.1\|2602956_2603379_-	HK97 gp10 family phage protein	Q3HQT4	Burkholderia_phage	9.7e-48	71.0
WP_082759185.1\|2603371_2603698_-\|head	phage head closure protein	A4JX04	Burkholderia_virus	1.0e-52	91.7
WP_060355341.1\|2603697_2604264_-	hypothetical protein	A4JX03	Burkholderia_virus	2.5e-75	75.5
WP_060355340.1\|2604270_2604456_-	hypothetical protein	Q8W6U4	Burkholderia_virus	2.1e-15	65.6
WP_060355339.1\|2604515_2605823_-\|capsid	phage major capsid protein	A4JX01	Burkholderia_virus	5.2e-225	95.6
WP_060355338.1\|2605925_2606894_-	S49 family peptidase	A4JX00	Burkholderia_virus	3.7e-159	94.0
WP_015967350.1\|2606890_2608150_-\|portal	phage portal protein	Q8W6U7	Burkholderia_virus	5.6e-240	100.0
WP_009910343.1\|2608154_2608340_-	hypothetical protein	Q8W6U8	Burkholderia_virus	3.2e-19	93.4
WP_059844794.1\|2608336_2610049_-\|terminase	terminase large subunit	Q8W6U9	Burkholderia_virus	0.0e+00	96.8
WP_060355337.1\|2610058_2610544_-\|terminase	phage terminase small subunit P27 family	Q8W6V0	Burkholderia_virus	4.2e-87	98.1
WP_082759183.1\|2610694_2611051_-	HNH endonuclease	Q8W6N0	Burkholderia_virus	1.6e-59	91.5
WP_004549735.1\|2611111_2611369_+	type II toxin-antitoxin system RelE/ParE family toxin	Q8W6N1	Burkholderia_virus	2.4e-41	100.0
WP_004548635.1\|2611365_2611752_+	helix-turn-helix transcriptional regulator	Q8W6N2	Burkholderia_virus	1.4e-64	99.2
WP_145986781.1\|2612164_2612485_+	hypothetical protein	NA	NA	NA	NA
WP_145986782.1\|2612579_2612954_-	hypothetical protein	NA	NA	NA	NA
WP_060355335.1\|2613105_2614986_+	ATP-dependent endonuclease	E5E3R2	Burkholderia_phage	6.5e-269	76.8
WP_060355334.1\|2614988_2616398_+	DUF2130 domain-containing protein	NA	NA	NA	NA
WP_082759180.1\|2616466_2616757_+	hypothetical protein	NA	NA	NA	NA
WP_060355333.1\|2617010_2617679_-	hypothetical protein	Q8W6N4	Burkholderia_virus	3.3e-106	95.2
WP_060355332.1\|2617687_2617948_-	hypothetical protein	Q8W6N5	Burkholderia_virus	1.3e-34	82.6
WP_060355331.1\|2617923_2618205_-	hypothetical protein	Q3HR03	Burkholderia_phage	2.1e-30	74.4
WP_060355330.1\|2618258_2618678_-	DUF1364 family protein	Q6JIF7	Burkholderia_virus	7.6e-53	71.6
WP_060355329.1\|2618674_2619049_-	hypothetical protein	Q6JIF8	Burkholderia_virus	1.6e-62	98.4
WP_060355328.1\|2619045_2619597_-	DUF1064 domain-containing protein	Q6JIF9	Burkholderia_virus	2.5e-75	82.6
WP_060355327.1\|2619593_2620586_-	hypothetical protein	A4JX55	Burkholderia_virus	7.4e-171	95.7
WP_060355326.1\|2620739_2621000_-	helix-turn-helix domain-containing protein	Q6JIG2	Burkholderia_virus	9.3e-41	98.8
WP_060355325.1\|2620996_2621818_-	hypothetical protein	Q8W6P2	Burkholderia_virus	5.7e-145	98.9
WP_060355324.1\|2621847_2622984_-	site-specific DNA-methyltransferase	Q8W6P4	Burkholderia_virus	2.7e-209	92.3
WP_082759178.1\|2622980_2624177_-	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	2.6e-114	56.0
WP_015967389.1\|2624187_2624628_-	phage regulatory CII family protein	Q8W6P5	Burkholderia_virus	8.0e-77	100.0
WP_060355322.1\|2624811_2625048_+	hypothetical protein	NA	NA	NA	NA
WP_060355383.1\|2625280_2625613_-	hypothetical protein	Q6JIG8	Burkholderia_virus	1.0e-52	92.7

DBSCAN-SWA_12

2629178 : 2639370

Burkholderia_virus(91.67%)

integrase

attL 2636240:2636254|attR 2640082:2640096

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045603127.1\|2629178_2629517_-	hypothetical protein	A4JX41	Burkholderia_virus	1.9e-49	90.2
WP_025992358.1\|2630071_2630347_+	hypothetical protein	Q8W6Q1	Burkholderia_virus	4.4e-41	91.2
WP_060355318.1\|2630723_2631332_-	hypothetical protein	NA	NA	NA	NA
WP_060355316.1\|2631732_2632545_+	prohibitin family protein	Q8W6Q7	Burkholderia_virus	1.6e-139	94.8
WP_060355315.1\|2632821_2633529_+	hypothetical protein	Q6JII4	Burkholderia_virus	1.3e-113	87.2
WP_186448589.1\|2634289_2634508_+	hypothetical protein	Q6JII7	Burkholderia_virus	4.7e-30	91.7
WP_060355314.1\|2634522_2635575_+	hypothetical protein	Q8W6R3	Burkholderia_virus	5.4e-188	97.7
WP_060355313.1\|2635571_2636498_+	phage Gp37/Gp68 family protein	Q6JIJ3	Burkholderia_virus	6.1e-135	71.7
2636240:2636254	attL	NA	NA	NA	NA
WP_082759170.1\|2636515_2636839_+	hypothetical protein	S4TTI6	Salmonella_phage	3.0e-25	56.7
WP_059641527.1\|2636962_2637232_-	hypothetical protein	NA	NA	NA	NA
WP_059641706.1\|2637231_2637477_-	hypothetical protein	Q6JIJ4	Burkholderia_virus	1.8e-30	86.8
WP_060355312.1\|2637485_2637695_-	hypothetical protein	Q6JIJ5	Burkholderia_virus	2.2e-29	89.9
WP_009910650.1\|2638045_2638270_+	DUF4224 domain-containing protein	Q8W6R6	Burkholderia_virus	6.8e-32	90.5
WP_025992364.1\|2638269_2639370_+\|integrase	tyrosine-type recombinase/integrase	Q8W6R7	Burkholderia_virus	2.1e-214	99.5
2640082:2640096	attR	NA	NA	NA	NA

DBSCAN-SWA_13

3178846 : 3189742

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038745286.1\|3178846_3181147_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.3e-166	41.1
WP_009892611.1\|3181143_3181458_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	2.6e-13	44.6
WP_004196460.1\|3181989_3182193_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.8e-23	81.8
WP_060356718.1\|3182319_3183915_-	multicopper oxidase family protein	NA	NA	NA	NA
WP_038745290.1\|3184082_3185342_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	63.0
WP_059643570.1\|3185606_3186185_+	pseudouridine synthase	NA	NA	NA	NA
WP_081463944.1\|3186446_3186662_+	hypothetical protein	NA	NA	NA	NA
WP_038745294.1\|3186856_3187366_+	DUF192 domain-containing protein	A0A1B1IUW8	uncultured_Mediterranean_phage	6.5e-14	43.1
WP_059581496.1\|3187627_3189742_+	elongation factor G	E4ZFJ7	Streptococcus_phage	3.4e-56	26.6

Anti-CRISPR protein detection

Acr_ID: NZ_CP013457.1|WP_186448532.1|2499502_2499769_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP013457.1|WP_186448532.1|2499502_2499769_-|hypothetical-protein

2499502_2499769_-

88 aa aa

2432899-2502799

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP013458_1	Orphan	1.3\|47867\|19\|NZ_CP013458\|CRT	47867-47885	19	2490361-2490379	2
NZ_CP013458_1	Orphan	1.9\|48119\|19\|NZ_CP013458\|CRT	48119-48137	19	2490361-2490379	2

1. spacer 1.3|47867|19|NZ_CP013458|CRT matches to NZ_CP013457 position: 2490361-2490379, mismatch: 2

gagcggcacgaatgcgtcg	CRISPR spacer
gatcagcacgaatgcgtcg	Protospacer
** *.**************

2. spacer 1.9|48119|19|NZ_CP013458|CRT matches to NZ_CP013457 position: 2490361-2490379, mismatch: 2

gagcggcacgaatgcgtcg	CRISPR spacer
gatcagcacgaatgcgtcg	Protospacer
** *.**************

2. NZ_CP013458

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013458_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013458_1

47760-49147

Orphan

Consensus_repeat	Method
GCGNCGGGCNANAACAGCACGGC	CRT

32 spacers

The CRISPR arrays of NZ_CP013458_1

>merge|NZ_CP013458|1|47760-49147|CRT
GCTTCGGGCGACAACAGCACCGCGAGCGGCGACAACGCGACCGCGTCGGGGACGAACAGCACGGCCAATGGTTCGAATTCGACCGCGTCGGGCGACAACAGCACGGCGAGCGGCACGAATGCGTCGGCGACGGGCGATAACAGCACGGCAACCGGCACGGATTCGACCGCGTCGGGCGACAACAGCACGGCGAATGGTGCGAACTCGACCGCGTCGGGTGACAACAGCACGGCCAACGGCACGAACGCATCGGCGACGGGCGATAACAGCACGGCGACCGGCACGGATTCGGCCGCGTCGGGTAGCAACAGCACGGCGAATGGTGCGAACTCGACCGCGTCGGGCGACAACAGCACGGCGAGCGGCACGAATGCGTCGGCGACGGGTGAAAACAGCACGGCAACGGGTACGGATTCGACCGCGTCGGGCGACAACAGCACGGCCAACGGCACGAACGCATCGGCGACGGGCGATAACAGCACGGCAACCGGCACGGATTCGACCGCGTCGGGTAGCAACAGCACGGCGAATGGTGCGAACTCGACTGCGTCGGGCGACAACAGCACGGCCAACGGTACGAACGCATCGGCGACGGGCGAGAACAGCACGGCAACGGGTACGGATTCGACCGCGTCGGGCAGCAACAGCACGGCCAACGGTACGAACGCATCGGCGACGGGTGAAAACAGCACGGCGACCGGCACGGATTCGACCGCGTCGGGTAGCAACAGCACGGCCAACGGTGCGAACTCGACCGCGTCGGGCGACAACAGCACGGCGAACGGCACGAACGCATCGGCGACGGGTGAAAACAGCACGGCGACCGGCACGGATTCGACCGCGTCGGGCAGCAACAGCACGGCCAACGGCACGAACGCGTCGGCGACGGGCGAGAACAGCACGGCAACGGGTACGGATTCGACCGCGTCGGGCAGCAACAGCACGGCGAATGGTGCGAACTCGACTGCGTCGGGCGACAACAGCACGGCCAACGGTACGAACGCATCGGCGACGGGCGAGAACAGCACGGCAACGGGTACGGATTCGACCGCGTCGGGCAGCAACAGCACGGCGAATGGTGCGAACTCGACCGCGTCGGGCGACAACAGCACGGCCAACGGTACGAACGCATCGGCGACGGGCGATAACAGCACGGCAACCGGCACGGATTCGACCGCGTCGGGCAGCAACAGCACGGCGAATGGTGCGAACTCGACCGCGTCGGGCGACAACAGCACGGCCAACGGCACGAACGCATCGGCGACGGGTGAAAACAGCACCGCCAACGGCGCGAACTCGACCGCATCCGGCGCGGGCGCGACGGCAACGGGCGAAAACGCCGCGGCTACCGGCGACAGCGCGACGGCGACGGGCAACAACGCGTCGGC

>NZ_CP013458|1|1|47760-49147|CRT
GCTTCGGGCGACAACAGCACCGC	GAGCGGCGACAACGCGACC
GCGTCGGGGACGAACAGCACGGC	CAATGGTTCGAATTCGACC
GCGTCGGGCGACAACAGCACGGC	GAGCGGCACGAATGCGTCG
GCGACGGGCGATAACAGCACGGC	AACCGGCACGGATTCGACC
GCGTCGGGCGACAACAGCACGGC	GAATGGTGCGAACTCGACC
GCGTCGGGTGACAACAGCACGGC	CAACGGCACGAACGCATCG
GCGACGGGCGATAACAGCACGGC	GACCGGCACGGATTCGGCC
GCGTCGGGTAGCAACAGCACGGC	GAATGGTGCGAACTCGACC
GCGTCGGGCGACAACAGCACGGC	GAGCGGCACGAATGCGTCG
GCGACGGGTGAAAACAGCACGGC	AACGGGTACGGATTCGACC
GCGTCGGGCGACAACAGCACGGC	CAACGGCACGAACGCATCG
GCGACGGGCGATAACAGCACGGC	AACCGGCACGGATTCGACC
GCGTCGGGTAGCAACAGCACGGC	GAATGGTGCGAACTCGACT
GCGTCGGGCGACAACAGCACGGC	CAACGGTACGAACGCATCG
GCGACGGGCGAGAACAGCACGGC	AACGGGTACGGATTCGACC
GCGTCGGGCAGCAACAGCACGGC	CAACGGTACGAACGCATCG
GCGACGGGTGAAAACAGCACGGC	GACCGGCACGGATTCGACC
GCGTCGGGTAGCAACAGCACGGC	CAACGGTGCGAACTCGACC
GCGTCGGGCGACAACAGCACGGC	GAACGGCACGAACGCATCG
GCGACGGGTGAAAACAGCACGGC	GACCGGCACGGATTCGACC
GCGTCGGGCAGCAACAGCACGGC	CAACGGCACGAACGCGTCG
GCGACGGGCGAGAACAGCACGGC	AACGGGTACGGATTCGACC
GCGTCGGGCAGCAACAGCACGGC	GAATGGTGCGAACTCGACT
GCGTCGGGCGACAACAGCACGGC	CAACGGTACGAACGCATCG
GCGACGGGCGAGAACAGCACGGC	AACGGGTACGGATTCGACC
GCGTCGGGCAGCAACAGCACGGC	GAATGGTGCGAACTCGACC
GCGTCGGGCGACAACAGCACGGC	CAACGGTACGAACGCATCG
GCGACGGGCGATAACAGCACGGC	AACCGGCACGGATTCGACC
GCGTCGGGCAGCAACAGCACGGC	GAATGGTGCGAACTCGACC
GCGTCGGGCGACAACAGCACGGC	CAACGGCACGAACGCATCG
GCGACGGGTGAAAACAGCACCGC	CAACGGCGCGAACTCGACCGCATCCGGCGCGGGCGCGACG
GCAACGGGCGAAAACGCCGCGGC	TACCGGCGACAGCGCGACG
GCGACGGGCAACAACGCGTCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013458.1\|WP_059576968.1\|53352_56601_+\|response-regulator	unknown	unknown	gnl\|CDD\|182772
NZ_CP013458.1\|WP_059576955.1\|59833_60460_+\|response-regulator	unknown	unknown	gnl\|CDD\|182154
NZ_CP013458.1\|WP_145986836.1\|57920_59294_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013458.1\|WP_060355422.1\|39580_40111_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP013458.1\|WP_038754894.1\|44942_45203_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013458.1\|WP_063889433.1\|45252_45939_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP013458.1\|WP_038754903.1\|40212_40983_+\|molecular-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_CP013458.1\|WP_145986833.1\|36157_36553_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013458.1\|WP_060356424.1\|65010_65652_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP013458.1\|WP_186448642.1\|60516_64218_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|182169
NZ_CP013458.1\|WP_082759214.1\|36959_38843_-\|putative-Ig-domain-containing-protein	unknown	unknown	gnl\|CDD\|276965
NZ_CP013458.1\|WP_038747557.1\|52075_52489_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013458.1\|WP_038754897.1\|43517_44498_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP013458.1\|WP_038754911.1\|34375_35203_-\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NZ_CP013458.1\|WP_060355427.1\|41040_43527_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP013458.1\|WP_145986835.1\|50152_51190_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371305
NZ_CP013458.1\|WP_081989517.1\|56861_57722_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|376350
NZ_CP013458.1\|WP_145986837.1\|59283_59703_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013458.1\|WP_038754909.1\|35241_35946_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP013458.1\|WP_038747402.1\|52687_53353_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
NZ_CP013458.1\|WP_059576968.1\|53352_56601_+\|response-regulator	gnl\|CDD\|182772	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC.	2.14579e-53
NZ_CP013458.1\|WP_059576955.1\|59833_60460_+\|response-regulator	gnl\|CDD\|182154	PRK09935, PRK09935, fimbriae biosynthesis transcriptional regulator FimZ.	9.21834e-65
NZ_CP013458.1\|WP_060355422.1\|39580_40111_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.07876e-21
NZ_CP013458.1\|WP_063889433.1\|45252_45939_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	3.08873e-40
NZ_CP013458.1\|WP_038754903.1\|40212_40983_+\|molecular-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	2.37592e-70
NZ_CP013458.1\|WP_186448642.1\|60516_64218_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|182169	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS.	8.43974e-99
NZ_CP013458.1\|WP_082759214.1\|36959_38843_-\|putative-Ig-domain-containing-protein	gnl\|CDD\|276965	sd00038, Kelch, Kelch repeat. Kelch repeats are 44 to 56 amino acids in length and form a four-stranded beta-sheet corresponding to a single blade of five to seven bladed beta propellers. The Kelch superfamily is a large evolutionary conserved protein family whose members are present throughout the cell and extracellularly, and have diverse activities. Kelch repeats are often in combination with other domains, like BTB and BACK or F-box domains.	1.49545e-36
NZ_CP013458.1\|WP_038754897.1\|43517_44498_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	6.08201e-19
NZ_CP013458.1\|WP_038754911.1\|34375_35203_-\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	1.38011e-88
NZ_CP013458.1\|WP_060355427.1\|41040_43527_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP013458.1\|WP_145986835.1\|50152_51190_+\|hypothetical-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	9.8003e-06
NZ_CP013458.1\|WP_081989517.1\|56861_57722_+\|EAL-domain-containing-protein	gnl\|CDD\|376350	pfam00563, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.	3.94329e-64
NZ_CP013458.1\|WP_060356424.1\|65010_65652_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.00286e-42
NZ_CP013458.1\|WP_038754909.1\|35241_35946_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	4.67652e-21
NZ_CP013458.1\|WP_038747402.1\|52687_53353_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.65135e-41

>NZ_CP013458.1|WP_063889433.1|45252_45939_+|OmpA-family-protein
MKNLIIVIALSALAGCTVYSGPTVNARPVGDAAGKQFEVECTGLFVETGSCLKKARELCEIQPGSPSLHVLETIGPIGRTPDRLVFRCDAPVKPRPPIKPQPPAAIVPPPVQPPEKVLFHGDALFDFDRADLKLLGKRALDDVIRQAKGKRFRVVLVSGYTDAIGSDAYNNALSARRARTVADYLRERGLLADRVVVNGFGKSNPVASNATDDGRAQNRRVEIILERE
>NZ_CP013458.1|WP_038754894.1|44942_45203_+|hypothetical-protein
MKFIVLLLVTALAGCSSFSTSRTNIYSIRAEDGIQRYRVTCSGLFGGMEACRQRAAEVCEASHVVKIGPQEPAAVTFMCEASRAAR
>NZ_CP013458.1|WP_038754897.1|43517_44498_+|type-1-fimbrial-protein
MQLKRESLVRPLGFFRMRRVACCLWIAAAALPMGARAATCEGDKTLVTLPAIAVASDAPIGTVLWSQSSIGFSTYCTLGWIDTSNIYVWRTDLSSTLQQYGLTFWLTYEGQGGNTAEQIKSPLVVDLGGKAGYASGTVGLELRKTGATPAQGVVSAADMPAFYLDSNTNNKKGSHYIRGLASISFVSYTCDIDTGSRSMTVPLGDVRVDRFTGIGSSFADRNFSIGLTCTQPSGTYNVALTFSATADSSGAPGVLAITQSEAAATGVGIQLLMNGSPVTFGSELDAGSATAGTTLAIPMTARYYQTGSVITPGAANGIATFTISYK
>NZ_CP013458.1|WP_060355427.1|41040_43527_+|fimbrial-biogenesis-outer-membrane-usher-protein
MLAAALTALSSVVRGEQAFEFDPAFLELGGGRGGADLSVYATSNRVLPGVYLVSIFVNDEAIDRRDIEFVPKSREDAVPCLTARMFDEWGVNVAALPRLAQAREDACVDIVDSVPDARVAFDSHQLRLNVTVPQAALKRRARGSVDPARWDQGINAALLDYQLSAAQYAGGNYASANSRTTLYAGLRGGINLGAWRLSHTSSFLRGLDGRDRFQIINTFVQRDIQGWNSRLMAGEGTTPSNIFDGFQFRGVQINTDETMLPDSLRGYAPTVHGVAQTNAQVTIKQNGFVIYSTYVPPGPFTIDDLYPTSSSGNLDVTITEADGHVTTFTQPYSAVPMLLRDGSWRYNVTAGQYRDGISGSHPNFAMATLARGLPGEFSLYGGVIEAGMYQSVLVGIGKNLGTVGAVSFDVTHARSAIDMADSSTVSGQAFRVLYAKAVGGWGTDFRLLAYRYSTAGYRSFADAVQLRDGSEPAALGAKRQRLEGNVNQRLGRLGSMYASVVLQTYWGSAARSTVYQLGYNGNWGRASYGLYSTYSKGNGVPSSWNVSLSLSMPLEALFGGARARATSGGTNVTYFASRNNENHFNQQVTVGGGSSDQQLNYSVGVAHSNQSDVSGTASASYLAPFGRYGASVGSGRGYSQAALTAAGGMLWHGTGLLFTQPLGDTVAVVGVPNVSGIHFEMHPGVSTNRAGEAVIPRLNPYRVNRIVIDPRRMPQDVEIRNPVSEVVPTRAAVVQAHFDSVVGFRAMFALTRPDGSSPPQGATAENDEGQALGVVGMDGETFVAGLPDIEGRFFVRWGAERQNRCHVNYTLPEQAPAGAYPAVEATCN
>NZ_CP013458.1|WP_038754903.1|40212_40983_+|molecular-chaperone
MRLSIICHAAFAAALALGGVEAYAGIQVGGTRVVFDAKADARDTSVAVRNKGETPYVIQIFVDDGNGNTRRMPFTVTPPLFRLDGGKEQRVSVRYVKRGAGLPQDAESVYWLNVKEIPPTQKRKADVNTLKIAVLTRIKLFYRPAGLRGSAADAPSQLKWSVVPSPIGQGAALKVSNPTPYHVTFSTIEIQAAQNASINADMVNPKSELIVPIPLRAISHVGPVKFSYTTINDYGAVTQATEVTAQPAGTPDAPPQ
>NZ_CP013458.1|WP_060355422.1|39580_40111_+|type-1-fimbrial-protein
MKAKRMQRGVVAVLLSMFSVGAAYSQTATTGTINFTGSITDVPCEIDTTATSSAVTMAKVFANDFSGVGSTTGTTAFKIVLKNCGASTSGATVLFTGTTDTANPEALQTTVGGAGGVALQLVDDTGTPISIGTSSKEYTIAEGDNTFNFAARYIATSATVTGGAANATAVFALTYK
>NZ_CP013458.1|WP_082759214.1|36959_38843_-|putative-Ig-domain-containing-protein
MAFLAACSGSDLDSTARPPAGLNYSVPVVVYDKGTPIIPNSPHSSGGSITKYGVSPALPSGLALDPATGVIAGTPSIVAPVTIYVVTGSNSAGSVTARVQIEVEDGIAAPDSLSYPDNPVIYMTGVQISPNTPTTSGGEITQYAVEPALPAGLTLAPQTGVISGTPAAVTAPANYTITGSNSAGSAQAQVNIQVQAQTAPPTSLTYSDPAPVYVAGRVIAQDVPELAGGAATAYSVSPALPAGLSVDAQTGVISGTPQNAQPQTAYAVTASNSAGSVTAQVAITVTATGQWLSVDDLTQARYAHTATLLPNGKVLVTGGANNLGVPLSSTELYDPASNTWAAGAGMTQARSAHTATLLPNGKVLAAGGAGILFSGEVYDPASDTWTPVVAAVTTTDVRSAHTATLLPNGKVLIAGGVDDFGNALASARIYDPVSNGWTSAASMNQARRAHTATLLPNGKVLVAGGAGILFSGEVYDPASDTWTPAVAAVTTTDVRSAHTATLLPNGKVLIAGGVDGSGSALSTTKIYDPVSNGWTSAASMNQARSAHTATLLSNGKVLVAGGRGNALSSAEIYDPNNDTWTAVASMNQGRAVYAATLLSDGRVLVEGGHGSVAGFLGALSSTEAYMP
>NZ_CP013458.1|WP_145986833.1|36157_36553_+|hypothetical-protein
MVTYQGVADIAGKSASATNMRIIIAILPLVPALLSFVFASETLTVGASVGGLLSIIGPVVLTGHGDPASLLQSGIRTGDALMLVAKIAHATCVVPPRRRACRCPSGNRSPCRPGLPSCPLCRGIGSRLRRQ
>NZ_CP013458.1|WP_038754909.1|35241_35946_-|helix-turn-helix-transcriptional-regulator
MRHAHLFSRRDCGMHASSGPGPLEMFRHMIGGHRRGGGRHGFGPFGGFGGGPGGFSGFGGDDAMPRGRQFSADDLQLLLLALLAEQPSHGYELIKALDTRSSGFYAPSPGMVYPALTYLEELGYVTVQAEGNRKRYALADAGRAHLDAQRERVDLLFAKLAHLGRKMEFMRRAFAGETPAAEDDTHGWLPEFVDARMALKQALFRKSGADADEQRRIAAILRRAVADIEGRTEG
>NZ_CP013458.1|WP_038754911.1|34375_35203_-|siderophore-interacting-protein
MTQPTTERAVVRVRHTLKFRLLQVKRVAKVTPHLMRVTLTGDELDDFESASFDDHVKVFFPPPGEDAPARPEFGPNGIVFPEDKPRPVARDFTPRRYDRAARELDLDFVLHHPGPASQWAAQARVGQTLGIGGPRGSFVIPKDFDWHLLIGDDTALPAVARRLEELPAGTRVAAVLEVADPSAQIEFATEANLYVMWRHRDDAANGERGASRLVDALRELPLPAGDGYVWAAGEAAAMRGVREHLCRERGVAKSRIRASAYWKHGAVAVHESLED
>NZ_CP013458.1|WP_145986835.1|50152_51190_+|hypothetical-protein
MALLFECAGLPGCAAAVLAGAWINKRRMHAKCSSRASVSRSTRTCGYPAGWPAPERGLSRSVRPCLPFVATIDAERCGALNRAALGLLCSGYSPIRNAERTRSADYRYPDSDIKQACRLVGRAIVRPVRFAGDSERAAARSLPLSIRFAGTTRFIGIGASTPALVRRHLRCTAWAQARRASLRCAAASAHITRIRTCWKRSTSATRFILNSRTFACSLDVAKPSHGLASFGGTHPACRAVASRVDSIVARQWESAQSDVDFDAFPGDCLLSHDPHLISHLIGNRGCRRRNFDCKGGATAHLRASRRSARTRSSNRAPFPGQPLASGRQDNACAYPGAIVSLYEGP
>NZ_CP013458.1|WP_038747557.1|52075_52489_+|hypothetical-protein
MPVVFVAFCVLLLSLWYVDILTGWLIVAFALLIEAMLIGIGFFVFVTVRISRWQRHEHDAKTAPCCADQQADEDSPIPVGFDGVKTVHCMFKSGRVGAFRVSCYNTNCPLMREADEAERLPRRTERAYSHEALLYEK
>NZ_CP013458.1|WP_038747402.1|52687_53353_+|response-regulator-transcription-factor
MSNVALHTRSVVVADDHPIVLRAVTDYVNSLPGFRVVASVSSGDALLSAMREQEVNLVVTDFAMHQADDDKDGLRLISHLMRAYERTPIIVFTMLTNSGVISQLCRMGVAGLVGKEEEITELGRVCLNVARGAGQSLSPGMAHRLAVAGSIRPGEAAFNALTPKELEVVRLFTGGMSLTDIARTLNRSLGTVSTQKRSAMRKLHVDTNVDLINCAREQGLL
>NZ_CP013458.1|WP_059576968.1|53352_56601_+|response-regulator
MQRLMQELEGSPLRKFHSLESNLKRERRVFATVIVLLVSAAISIAAMTVTGLFQTAFRQEEQSARIHEKEVVDAFLQRRMMLTTASLVLQLRMNGAPSALSAPAPNACTPMAHNARDDTILRESCDYTVQLLANSGQTPSVEMVTADSSVGYGYLFPAGDLSALRASTPSELVSAVLERYRKRGLDPLDAARKKQILWFAIGSGASGEELHMIGASVVLKDDRLYALVLTSVDLHSLASPIERAGRVQQPVIVDADGVPLVNADDSEMVRKVDERLAARQDGLYHWIPGFGWALRRPAPFSGFGHMMYLLPLDLQLQSMQYELGLVGGATLVLIVLLLVAFRYWNYRFLTRIYEEASRALESEMLNHLLVHATPVGLCIVQRTTLEIVVANPIARTMLGLRLSDRHLPQELQNAFESSLATQDTQSDDARIFQFPFTLSRAGHSAVHIEITYAPATLNAREVFFCAITDMTAHHQAEILLREAKLTSDAAAKAKVAFFASMSHEIRTPLSSLVGNIELIARGPLAPEQQARVKAMETSARGLMQIVNDVLDFSKIDVGELSLMEEWSNIADLLDRLALSHAPLATQQGLKFYVVFERSLPARLYFDPVRVSQIVNNLLSNALKFTPSGKIVLRAGWHAGELEISVTDSGIGIPDDLKHRLFLPFTQGDSNRLRQARGTGLGLSICARLCELMKGRIDLESTVGVGTRIAVSLPLDASEGDSSNAYWTLPYRRVAVLGRAQENLEWLTNLFDPGVTAVTAFANPADPIDEHAHDFLMATDEFAPAEVRAWWKRPDSIVWVGQTGPLVPRRRDGGGVEISIYSLAGVKSAAQMLAAGRTALVDAGQAPRGAEAGITVLIVEDNLLNRSLLFDQLTTLGVRVIEAKNGEEALALLSKEPVDAVMTDIDMPVMDGFQLLAEMRKLGMTMPVYAVSASARPEDVADGRARGFTDYLAKPVPLEGLETVVRACCSAQTGERAQDDAQDDLPDVPNVPAAYARVFVAQTGGEIAEFDAILHERALPKLRRWLHGVSGGIAVLGPSALHEQCQELRSYVREAGEWNREIELQALAIRDALERMVAALTNE
>NZ_CP013458.1|WP_081989517.1|56861_57722_+|EAL-domain-containing-protein
METGITRRRGAFFAREHEKGLPLDEADLERALEAGELVMDYQPIVSVRSGAVTGAEATIRWDHPDWGALPQRVVYAVADRLGAAPRIAGHAVGEACRQLARWKHEGGGVSALSMRFSGAQLCAESVFERLAQSIAEFDISSSQLTLEVPEMSAPEESLSLLDRLKRLRQKGYGIVLSDFGAHHTAMSTLMVLPVTGVKFGASFTERLPGSPTAEAILSSVSRLAHDLGFSLTVSGVANGRQLELLRRYRDIELQGAYLFKPMRAQDWHERVNPRALSQLNLREPPF
>NZ_CP013458.1|WP_145986836.1|57920_59294_-|hypothetical-protein
MAPKHARNATRPTRRAVAAIGEIAQRTRIAYPDSFDCTDRESTVESEFLEISAPRARRARPTSPTTVNAATNDEIANARRHGGRVSNNCDFRGKKRKAMSVHGFALGTAAFVERRRARARRATRRVAGERPGNASASPSCVDVGSSGRRAGPPAATSLSSAPDEPARADCKRHAVAPRTAEDIGANASPAFGGNVRHRRERIRRSTVWSKDRKMSTDLIERSPVAPLRPSIACELAGRLDGIRAAGRPRVGSAPDPYRLVSDIAPRAGRFDHATPHFLQAREHAPVPDAPLPSGRIFEARMRRATARRALSYDAHAACSCALSSRPACVALRAPSGVFGGDPARADHDAARDAPPRAAAMSVSGPEGPLARQRRRCRAAALMRHPDSTRLAARDQARDKVESPSLCARRARDAAFGLACRALPAKRLPAPSSPKNVRACHARIAEPTEALSGRARTA
>NZ_CP013458.1|WP_145986837.1|59283_59703_+|hypothetical-protein
MGAIDGKHADAARFVRERMSADGRALRVAGRRVRQLPVHYAATDFPRHHSSAFAMEPRDTRRADASGTARSQARYQREKALAQYRHVIAAAAAWLSAGCCSFGAPVRPHDETQGECAAARYPPARPLVAASFVLSRTSA
>NZ_CP013458.1|WP_059576955.1|59833_60460_+|response-regulator
MPGILIVDDHPAIGLAIRTVLSGRQEFGPIREAANAVDAMALLREHPIELAILDIEIPGGDGFRLLKRIRAEGLKTRVLIFSAMDEKIYSVRASQAGANGFLSKRNDMAQILNAVKTILSGYLFFPAEAVSALYHDRAQEAANRIGGLTNRELTVLRGLARGSSNRQISEDLCISNKTVSTYKSNIFEKLGVSSVVGLADYAKKNGLI
>NZ_CP013458.1|WP_186448642.1|60516_64218_+|transporter-substrate-binding-domain-containing-protein
MNTMSSCIWSKIGRAGRRNAVRLSAILCFASVGAHAGTANPEYPPRKLQLHSIEDANRHLSAEPGDRSRPHLPRTVRVAVARDGGVPYNLYRDRDLYEGVTADYLHVIQHAGALRFEIWMFDTRAQARAALMSGSVDLVGGVRLDADRHLLRSRPYFTDRRVEVRVLGEKGRMDSASAPPESYAVTADDFGNAAFRARYRHEKITAYPTALGALQAVAYRTADAFIGQATEANYLIDQLQLPLSITNFADVDAPPFVFAARAADTDLINHINAALRAIPIRTAGEIQRRWFGSANHFKIRRDLVLTEEEREYVRTHRTIRYASAIDLPPYMFVESGRGKITGLGVDVMDLIGERTGLSFQPVSFGTQRECLAALADGRVDLLPNVAIGDARENWMTSTAPYAQTLWVILVRAGDGAVTSTAHLGGKRIGIMPETRGFQRFNPEPLIGEPQLVEARDIPTLFRMLLDGRVDAISLPGTTANYFIAQYELARLVKAVTTVNESVTSIAMAVRRDNELLLGILDKVFQATPPEDLDALRRDRMRYRPTNVIAGWSTMQRQRVVKALTALSVVLSLSAAALGAIRYGQRRRARELRERIALQDALINALPFAVYLRQADGRVVSCNASFAEAYGLPRDALGDADALPASTLRQQALNAMLDELFQATLTERRAQFADRTLADNGGDSDLFVWTVPLGCSSSGAGAVLGGWIDITLRKQTERALKQATLEAETANRAKSAFLATISHEIRTPMNAILGLLELELGLPGAPNRDTIWTVRETAQSLLRLINDLLDTSRAESGQLQLDPRPTCVVSCVERLLLMYRRLCAEKGLALNAEIDPGVPQTLQMDGLRVRQVIGNLLGNALKFTDRGGISLSLRWQSRDDSRGTLEIVVRDTGVGIRAEDQARLFQPFEQVTGAGAGLDGSGLGLWICGTLVAQMRGRIALESEFGEGTQVRVSIPLMRASSDDAMPPALPTPRDWACTLRALVVDDHAPNRMLLVRQLHALGFEETFEAGDGEQALELLERETVDVILTDCSMSRMSGYAFTAAVRADERWRDLPIFGCSADARAEAHEQALSAGMTAFLAKPVGLLDLAHAFDAHLRGAVLVAPRAAEAAADPTSDAMALAARHALYAIAGNDIDARNALIDTLVRSNDADIRALQQAMDNGDVETAIRTAHRIKGSSQIVGAAELEHGCVQLEQRLREDDTAASRAHAARVVALCAVLHAHLRALRQRAIA
>NZ_CP013458.1|WP_060356424.1|65010_65652_+|response-regulator-transcription-factor
MAGITLSIADDHPIVLHSIKLLVEPQPLLQLRHVCSSGRELLSALTREPTHLVLTDLTMPAQGGSYDGLALLRAVRAAAPRSRVIVLTAHSNAAILTKAMQLGARALVGKADPAHEIIRACMHVHAGATRHLSPVMRRNIEDGQSAHMRNCNLTQKELDVVRLTATGLSLSEIALQYRRSVSTVASQKSTAMRKLGIHSTADLIRYATENGLT

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Crispr_ID: NZ_CP013458_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013458_2

542550-542682

Orphan

Consensus_repeat	Method
CGGGCTTCGCGACGCCGCATAAAAAAACGACGGGAGCCGGGCGGCCGTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013458_2

>merge|NZ_CP013458|2|542550-542682|CRISPRCasFinder
CGGGCTTCGCGACGCCGCATAAAAAAACGACGGGAGCCGGGCGGCCGTAATCGTCGAACGATCACGCGGCCGGACGTTCGAGGCGGGCTTCGCGACGCCGCATAAAAAAACGACGGGAGCCGGGCGGCCGTAA

>NZ_CP013458|2|1|542550-542682|CRISPRCasFinder
CGGGCTTCGCGACGCCGCATAAAAAAACGACGGGAGCCGGGCGGCCGTAA	TCGTCGAACGATCACGCGGCCGGACGTTCGAGG
CGGGCTTCGCGACGCCGCATAAAAAAACGACGGGAGCCGGGCGGCCGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013458.1\|WP_052145000.1\|552116_553343_+\|DUF3472-domain-containing-protein	unknown	unknown	gnl\|CDD\|378772
NZ_CP013458.1\|WP_082754727.1\|542202_542508_-\|DUF4180-domain-containing-protein	unknown	unknown	gnl\|CDD\|379371
NZ_CP013458.1\|WP_060356292.1\|531312_531849_+\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NZ_CP013458.1\|WP_059581126.1\|546246_546945_+\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153233
NZ_CP013458.1\|WP_060356298.1\|545094_546159_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP013458.1\|WP_038744348.1\|550352_551234_+\|Dyp-type-peroxidase	unknown	unknown	gnl\|CDD\|273607
NZ_CP013458.1\|WP_059581104.1\|533973_534702_+\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NZ_CP013458.1\|WP_038751047.1\|538492_539215_+\|haloacid-dehalogenase-type-II	unknown	unknown	gnl\|CDD\|319787
NZ_CP013458.1\|WP_059644535.1\|540901_541849_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP013458.1\|WP_186448648.1\|543444_543927_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013458.1\|WP_060356293.1\|531845_533993_+\|chemotaxis-protein-CheR	unknown	unknown	gnl\|CDD\|224271
NZ_CP013458.1\|WP_059644546.1\|547312_549307_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013458.1\|WP_038751052.1\|543886_544927_-\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|183400
NZ_CP013458.1\|WP_156432572.1\|551859_552009_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013458.1\|WP_060356296.1\|539511_540795_+\|voltage-gated-chloride-channel-family-protein	unknown	unknown	gnl\|CDD\|239654
NZ_CP013458.1\|WP_059671631.1\|542757_543429_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|183072
NZ_CP013458.1\|WP_060356295.1\|537087_538110_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|237135
NZ_CP013458.1\|WP_060356291.1\|529607_531284_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP013458.1\|WP_060356294.1\|534698_537083_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223716
NZ_CP013458.1\|WP_145986855.1\|551293_551821_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013458.1\|WP_052145000.1\|552116_553343_+\|DUF3472-domain-containing-protein	gnl\|CDD\|378772	pfam11958, DUF3472, Domain of unknown function (DUF3472). This presumed domain is functionally uncharacterized. This domain is found in bacteria, eukaryotes and viruses. This domain is typically between 174 to 190 amino acids in length. This domain has a single completely conserved residue G that may be functionally important.	2.90248e-49
NZ_CP013458.1\|WP_082754727.1\|542202_542508_-\|DUF4180-domain-containing-protein	gnl\|CDD\|379371	pfam13788, DUF4180, Domain of unknown function (DUF4180).	3.27633e-19
NZ_CP013458.1\|WP_060356292.1\|531312_531849_+\|chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	8.99748e-20
NZ_CP013458.1\|WP_059581126.1\|546246_546945_+\|DJ-1/PfpI-family-protein	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	1.19008e-85
NZ_CP013458.1\|WP_060356298.1\|545094_546159_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.44619e-89
NZ_CP013458.1\|WP_038744348.1\|550352_551234_+\|Dyp-type-peroxidase	gnl\|CDD\|273607	TIGR01413, Probable_deferrochelatase/peroxidase_EfeN, Dyp-type peroxidase family. A defined member of this superfamily is Dyp, a dye-decolorizing peroxidase that lacks a typical heme-binding region. A distinct, uncharacterized branch (TIGR01412) of this superfamily has a typical twin-arginine dependent signal sequence characteristic of exported proteins with bound redox cofactors.	4.40423e-84
NZ_CP013458.1\|WP_059581104.1\|533973_534702_+\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	1.24137e-24
NZ_CP013458.1\|WP_038751047.1\|538492_539215_+\|haloacid-dehalogenase-type-II	gnl\|CDD\|319787	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase. L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation of L-2-haloacids to produce the corresponding D-2-hydroxyacids with an inversion of the C2-configuration. 2-haloacid dehalogenases are of interest for their potential to degrade recalcitrant halogenated environmental pollutants and their use in the synthesis of industrial chemicals. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.04337e-57
NZ_CP013458.1\|WP_059644535.1\|540901_541849_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	8.80839e-13
NZ_CP013458.1\|WP_060356293.1\|531845_533993_+\|chemotaxis-protein-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	5.50219e-66
NZ_CP013458.1\|WP_059644546.1\|547312_549307_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.61467e-159
NZ_CP013458.1\|WP_038751052.1\|543886_544927_-\|tryptophan--tRNA-ligase	gnl\|CDD\|183400	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.	0
NZ_CP013458.1\|WP_060356296.1\|539511_540795_+\|voltage-gated-chloride-channel-family-protein	gnl\|CDD\|239654	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.	1.23751e-180
NZ_CP013458.1\|WP_059671631.1\|542757_543429_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|183072	PRK11280, PRK11280, hypothetical protein; Provisional.	3.72004e-14
NZ_CP013458.1\|WP_060356295.1\|537087_538110_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|237135	PRK12555, PRK12555, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NZ_CP013458.1\|WP_060356291.1\|529607_531284_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.21132e-60
NZ_CP013458.1\|WP_060356294.1\|534698_537083_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	7.79082e-146

>NZ_CP013458.1|WP_082754727.1|542202_542508_-|DUF4180-domain-containing-protein
MRRTARADASLRPFRLPRLREQAYIDFLGLVTRVAGHLARKPIHYRARLAAVGDIDAALARGRALRELVHETNRGDTFWFAADVGALAQRLPERSRAAGAH
>NZ_CP013458.1|WP_059644535.1|540901_541849_-|CPBP-family-intramembrane-metalloprotease
MGDVNKTGWPPPSSPRLKRIWYGAHGLRAGWAVLLYAAIVVAIVLALGYAARIAHHPFRPHIESSAAGQIPFELALCAASLIATRVMSRIDRRSWLDYGLRAPHSASHFVWGALCSLVAVSAIMGLLVLTGGATIEYSGASRAAALESALAWAAAFALIALAEEVAFRGYPFFKLAQRAHPVVAAALTSLAFGMSHVSNRNENIAGIVPIVMYGLVACVAIWRTGSLWWALGEHAMWDWSESFLFGAADSGLTAHDTLFRSHAIGPVWLSGGTVGPEASVLVFPALAALAYVAWRLPPRAASNDPALAHKRRQMI
>NZ_CP013458.1|WP_060356296.1|539511_540795_+|voltage-gated-chloride-channel-family-protein
MKRLHTLEPVAALAHLCRWLALSAVVGALAGSASAFFLRALDLATGARVAHPWLLWLLPVAGFATGWVYHRAGRSVERGNNLLIDEIHDPQRIVPKRMAPLVLAATVLTHLFGGSAGREGTAVQMGGALADRVTQLFALGRDDRRIMLMGGIAAGFASVFGTPLAGAVFGLEVLAIGRLRYDALLACVAASVVADAVCRMWGIHHTVYAVPFVPALSAAGAASAVAAGIAFGIVGRLFAAATHALGARAKRWIAYAPLRPVAGGALVALAATLLHTPQYLGLGIPTIEAAFRGPLPVYDFAGKFAFTVVTLASGFKGGEVTPLFYIGATLGNALSHLLALPLPVLAGLGFVAVFAGAANTPIASTIMAIELFGAPIGVYAALACVVAYLFSGQAGIYRAQRVGQAKLPGPRGDASVAQPAAKEAAAR
>NZ_CP013458.1|WP_038751047.1|538492_539215_+|haloacid-dehalogenase-type-II
MQALGVKALVFDVFGTVVDWRAGIIRDAGPFLAKYGRAGADPAAFADAWRASYSPAMEEVRSGRRPFTRLDVLHRENLEAILPAFGVDRASVPDTDLDELNLAWHRLDPWPDSVAGLARLKAHYIIAPLSNGNVILMIDMAKRAGLPWDAILGAELAQAYKPTPEAYLRTADILALRPEQVCLVAAHNGDLAAARRCGYRSAFVARPREHGPAQTTDLRAEQDWDVVAADFVELAQRLGA
>NZ_CP013458.1|WP_060356295.1|537087_538110_+|chemotaxis-response-regulator-protein-glutamate-methylesterase
MNIGIVNDLPLAVEALRRTIALRPEHRVLWVATDGAQAVDFCVAQPPDLVLMDLVMPRIDGVSATRSIMARSPCAILIVTANVGANASYVYEAMGEGALDAVDTPTLEQGGSADPSQPLLAKIDQIGRLLATRTPSAAPSAAAPAPQGALPPLVAIGASAGGPTALTALLRRLPEDFPAAIVIVQHVDQAFAIGMAQWLDGYSPLPVRIARQGSVPQMGEVLLAATNDHLHLTPRGLLGYTRRPEETPYRPSVDVFFHSIVEHWKGGAIGVLLTGMGRDGALGLKAMRTKGHYTIAQDEATSAVYGMPKAAAAIGAATAVLPLDRIADQLISLVPRSKHR
>NZ_CP013458.1|WP_060356294.1|534698_537083_+|hybrid-sensor-histidine-kinase/response-regulator
MSHDDDFGRASLLELFREETHTQTQALSERLLALERGAQDAATLEACMRAAHSLKGAARIVGVPQGVDIAGRMEDCFVAAQHGRRPLTPCHVDALLTGVDLLVRVGDPQAAALVAQHEIDAFAAALAAADAGTGDAQTGDAGEADGAGARGGGAAGGDAAAGSSGKTDAMRASGGGRGAGDASGMGGASGAGDASDAAGVGGVRVASDAGEARGASGSMRRVRADTLNRLLSLSGESLVESRWLKPFAESMLRVKRAQRDAARSLDALVESLADDADPRVLGALNEARQMFTDVQRTFATRLDELDRFERRSSHIAEQLYDEALQCRMRPFGDATRAYPRVVRDLARSLGKRVRFSIAGEATQVDRDILDMLDAPLGHLLRNAIDHGVEPPDARLARGKPAEAAITLEARHSAGSLLVSVSDDGPGADLAAVRAAIVRHNLTDEDTAARLSDQELLEFLLLPGFSMREQVTDVSGRGVGLDAVQEMVKSVRGAVRIFNEPGLGMRFVLQLPLTLSVIRSLIVEVGGEPYAFPLVQVRRTLELDRADIDVLEGQQHFPLDDRRVGLVTAHQLLDAGELDEGRPTTAVVVVGGEPETYGVAVDRFLGERMLVVQPLDGRLNKIQNIAAGALLENGDPVLIVDVEDLIRSIDKLIRGGELAKVRRGDQDALARRSKRVLVVDDSLTVRELERKLLEKRGYDVTIAIDGMDGWNAIRSDSFDLVVTDIDMPRMDGIELVTLIKGDPLLKSVPVMIVSYKDRDEDRRRGLEAGADYYLAKGGFHDEALLDAVHDLIGDA
>NZ_CP013458.1|WP_059581104.1|533973_534702_+|purine-binding-chemotaxis-protein-CheW
MDRDAVERPRIAFDIDACWNRIGTRGDRSCERLDTYRRCLNCPVFERHAALLLDRPLTDADLADAARLAAERAPRANAAPAPSAARDGAAETVHSAFAFRVADEWLALPIRVLREITDTRSIHPLPHRRNRAVLGIVNVRGTLRVAVSLAELLSLDARADSAASRASFTRMLVVAHRGDPVVFPVDEVEGVLRFTPAEWMPVPATVARTGDAHSRGVFAWRGKTIGLLDEDRLFDSLTRSLR
>NZ_CP013458.1|WP_060356293.1|531845_533993_+|chemotaxis-protein-CheR
MNAFDPRFQAWLSRETGIDPASLGNDFVARALAERIAATQPGAGGDAAEQAARSPQPITSEALDAYWQRLNASDDERRALIELFVVPETWFFREREAFGALARLGAQRLSAQPARALRVLSAPCSTGEEPYSAAMALLDVGIDPARFEIDALDISARAIAHAERARYGRNSFRGHALGFRGRHFKAAADAWVLDERVRACVRFRQANLLDLLGCPGQPYDFVFCRNVLIYFDRDAQDRVVRIVEEQLDERGILFVGPAETGVVMRQGLTSAQIPLAFAFRKPAVDASAWPGANGTGAHAAGAAWRGGSAAAGIAGADRTPTLGGTLRAVAHEWFFDAGWPTPEPIARAIDGAPAEPSAGSSVPAPAAMRPASEPLARGGDSESDSDFSSDSDFDFDSGFNSGFNSGSDPGWRAVGAFARAPDVARPGGEPLARAVRDAARAAIAPQANAFDAGWAAAGAFSRAPGGAHAHADAFERAGGGAHVAAEPLARRANVARPALESLPTAAADAGWPAAGPIARDAGAAPRTSASLARAFDTAWLASGPIAGAAGVAQPAPAPRAPGSPALGGAAAMGAAIDAAQRATGDPRIGAPPEALLDVARRLADAGALDAAQQAVHASIEQSGPCADAFYLLGLIADARGRGDEAADCYRKALYLEPSHYEALTHLATLLDIAGDRDGAQWLMQRARRAAQYESAASVTDTDGGEPRGTHGPRRR
>NZ_CP013458.1|WP_060356292.1|531312_531849_+|chemotaxis-protein-CheW
MLFLLFHLDGERYALDAAEIAEVLPLAATKTIPGAPAWAAGILMHRGEPVPVIDVPRLALGRAAQPLRSTRLVLVRYRLPAAEPAVAPPRVRLLGLIVERATQTARIARDAFRDSGIATPHARWLGPIASDADGVVQWVAVQHIVSGDARALLFDYAAALDPAGASAPLAGAPTGGSR
>NZ_CP013458.1|WP_060356291.1|529607_531284_+|methyl-accepting-chemotaxis-protein
MPTVTPRASHEILRKPAAGSRLTLGNRILFSFGALFVLMLFMAALSYQRLRAINDEAISIERDSLPGVYLAASLRAATNESYIALQRAVFVDADADAVRRDLAKVPSLLEETDKLMSAYQASIYRNDDQERFNAFRASYERYVPLLNDAVQKAHGAKPDSLAAYAKMTPAWEEVIRTANVLVQENRRFAEQSATLIRESVHGTEITLAVALGVVLVAALVLGYFLYRAVTVPMARLVDVHDVMRTGDLTQRLNLGRSDEFGTLESGFNRMADELTALVAQAQQSSLQVTTSVAEIAATSREQQATANETAATTTEIGATSREIFATSRDLLRTMNEVSAVAEQSATLAGVGQSGLTRMGETMRSVMDAAGSVNAKLAILNEKAININQVVATITKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEIRRLADQTAVATYDIEQTVKEIQSAVSAGVMGMDKFSEEVRRGMRDVQQVGGQLSQIIAEVQTLAPRFQMVNEGMQTQASGAEQITQALSQLSEAAQQTAESLRQSSQAIDDLTLVANQLRTGVSRFKVDA
>NZ_CP013458.1|WP_059671631.1|542757_543429_-|glycine-zipper-2TM-domain-containing-protein
MNTKPIRKTATQRPAFTKTALLASLAATAALSLSACVAPGAYGPYGSQPQYGAPVYSQPSYAQPSYSQPSYAQPDYSQPAQPDYSQPGYPQQGYAQPGYQSGYQQGYQPGYSTQYGTIAGIRPIGGAIGPSGVAGTVVGALVGGVLGNQIGRGHGRDAATVIGALGGAVAGNQIGQQMGAQPSAYRVDVQLSDGSMRSFDLQTPGDLRPGDRVRIDGNQISRY
>NZ_CP013458.1|WP_186448648.1|543444_543927_-|hypothetical-protein
MRWARFRTGGSSGDARVGAERRCAFSPFRLFARFTVSPFHRFIVSSFHRFTVSSFHRFIDSSIHRFTVSTFRRSTGTLERLGIAAWRHRLACAVRACRSDRSTHALDNAPFPRTNRFTGPKTAVQDGISARADRAATDFTHCYARRSSNDDGIPYTAAVQ
>NZ_CP013458.1|WP_038751052.1|543886_544927_-|tryptophan--tRNA-ligase
MQDDISIPARAPIALTGDRPTGPLHLGHYVGSLKTRIALQDTHRQFILVADTQALTDNAHDPDKVRRNVIEVALDYLAVGIDPRRSTIAVQSGLPALAELTLFYLNFVTVARLERNPTIKDEIHARGFGRDIPAGFLCYPVAQAADITAFKADTVPVGDDQLPLIEQTNEIVRRINRQAGVDVLPEASALISSTGRLPGVDGRAKMSKSQGNAIALSSPPAAIADAVKRMYTDPNHLRVSDPGTVEGNVVFTYLDAFDDEPDEVERLKAAYRAGGLGDMTLKRRLEDKLQALIAPIRERRAQLAREPGYVVDVLKEGTARANDVTQRTLDDVRDALGAFSYRRFVG
>NZ_CP013458.1|WP_060356298.1|545094_546159_-|GlxA-family-transcriptional-regulator
MADMPKSPRIPPAEPLIPVPAPAAARRAVHVLAFDDVQLLDVAGPLQVFSTANDFAAQRGLAIPYAPRVVAANARSVASSAGLAFFAAPLPAAREPSDTLIVAGGWGVHDATRDPRLVDWVRRRAARTRRVASVCSGAFVLAAAGLLDGRRAVTHWSRCEELARRYPGVRVDPDPIFVRDGNVWTSAGVTAGIDLALALVENDLGRALALDVARHLVVFLKRPGGQAQFSTALTLQHEGGGFSELHAWAAANPGADLSVAALAARAGMSERSFMRRYREATGKTPARAIEQMRVEAARNLLAGGPLPIKRIAAHCGFGCEETMRRSFLRMLGVTPRAYRERFAPHGARTENVRP
>NZ_CP013458.1|WP_059581126.1|546246_546945_+|DJ-1/PfpI-family-protein
MAIEVGLLLFPQVQQLDLTGPHDVFASLPGVTARLVWKTREPVAASSGLALAPDATFDDCPPLDVICVPGGMGVADLMEDADTLAFIRRQAAHARYVSSVCTGALVLGAAGLLRGRRATTHWAFHSLLAPLGAIPVRERVVRDGNLVTGGGVTAGIDFALTLAAELVGEDVAQAVQLQLEYAPAPPFDAGDPDTAPARIVERVRERSKPVLARREQVVARVAAALERGRAER
>NZ_CP013458.1|WP_059644546.1|547312_549307_-|ABC-transporter-ATP-binding-protein
MAQKTTHPGGRAFTDVLAFTFRHWRAQPARIAAIAFFALATALGDVLTPLFAGRLVDALSHGVTAADKALAWSRALHAFGMLIGIGLACTLLRQAAFRNIIVLTLEMMSQIAANAFHRVQRFSTDWHANSFAGSTVRKITRGMWAIDLLNDTLLVALLPSVVMLAGATLLLGSHWPVMGAVVGGGSVVFIAVTVTMSLRFVAPAARLGNLWDTRMGGALADAVSCNPVVKAFGAETREEARLDGVVSKWRARTRRAWRRGTLNGGVQGAMLVAMQAAILGAALWLWAHDRASVGDIAFALTTFLVLQGYLRDIGMHIRNLQRSVNDMEELVSLERQPLGIDDKPGAKPISIAHGEIRFEHVTFGYSGAHAKPLYDDFSIRIAPGERIGLVGHSGSGKTSFIKLIQRLYDVDGGRIAIDGQNIADVTQASLRSQIAIVQQEPLLFHRTLAENIAYARPGATRGEIERAARLASAHEFIAELPQGYDTLVGERGIKLSGGERQRVAIARAFLADAPVLILDEATSSLDSESEVLIQQAMERLMVGRTTLVVAHRLSTVRALDRLIVLDKGRVIEEGSHDELIRLEGGVYRRLFERQALELAKGLIEQTGGDAAEWLSDEHDGRDERNERGERDKPGVLDGHDARRAHRAPDDGDGRIDDSAVAVEK
>NZ_CP013458.1|WP_038744348.1|550352_551234_+|Dyp-type-peroxidase
MSDFQQGILAPIPAASRYLSFRITHPERAASALAALRDAIDGVDTVIGIGPSLVQALDKKIDGLKEFPELSVPGAPVPSTPAALWVWLRADDLGAATVRSREIEQLVAPAFELDCAANAFRYADDRDLSGYEDGTENPEGDEAIETAFVSGKGAGFDGASFVAVQQWVHDFGKMREIPGDEMDRIIGRRKDDNEELEDAPAYAHVKRTEQESFKPEAKVLRRSSPWADERRAGLYFVAFGHSFRAFEVQMRRMIGATDGVHDGLFRFTQPITGSFFWCPPVKGGKLDLSALGL
>NZ_CP013458.1|WP_145986855.1|551293_551821_-|hypothetical-protein
MRIRVGIRRQRESASIAFEIRRPDAPNADSRNASSDGERSPRRRADAGSYETRRAGRVDVAINDRLAPILARGCGNRRYAEPRADETHGGVPPDRTLRDLRRAARLSARVDDAAVQTQAFGFGRQGPRHSGERCERHGAGAGAADREPGVSAQALTEDSGAQRGDVERSAVTHAN
>NZ_CP013458.1|WP_156432572.1|551859_552009_-|hypothetical-protein
MIEADSVKIGAALFIGPSGGSQRATLLTSPERSGAADRKSKPFEKRPFR
>NZ_CP013458.1|WP_052145000.1|552116_553343_+|DUF3472-domain-containing-protein
MSANRNIRTRRIELKFKCIAATVLAVAAVDATAAGACLNGSVIASSTSAPLVARQGSAFSSTLYDPAITSNNRTHNPVMLTVKVTNKGQPVSGCDVAWQPRGAGSASGWLFPVNASTGADGVASAWWIAGSGGAQTAVASIRRFDGTAQSVAIGGSAQPHRTRANSVHLNYQQASGWTAFSVDVTPEALAPTTYWEAIGWPGAYTGIQSVDGKQNGLVLFSVWDANGKSPQIIAKGPGVSCTQFGGEGTGYKCSKSHAPVAGRTYRFMASIAPVAGQNQTDYSVWFTDTSTNVRELIATLRYQKSLQSANFANSFVEDWATQGASCLDATQRAGQYGNVWAFDRVAGRWVAVKKATTSAVYTPDHNEICSNYQFSVVNGNFRMSTGGYAVGQPHNLPGGPKSILLTLP

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Crispr_ID: NZ_CP013458_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013458_3

2815750-2815857

Orphan

Consensus_repeat	Method
CGGAAAGCGGAAAGCGGAAAGCGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP013458_3

>merge|NZ_CP013458|3|2815750-2815857|CRISPRCasFinder
CGAAAAGCGCGAGACGGAAGACGGAAGACGGGAGACGGGAGACGGGAGACGGAAAGCGGAAAGCGGAAAGCGGAAAGCGGAAAGCGGAAAGCGGAAAGCGGAAAGCGG

>NZ_CP013458|3|2|2815750-2815857|CRISPRCasFinder
CGAAAAGCGCGAGACGGAAGACGG	AAGACGGGAGACGGGAGA
CGGGAGACGGAAAGCGGAAAGCGG	AAAGCGGAAAGCGGAAAG
CGGAAAGCGGAAAGCGGAAAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013458.1\|WP_038755500.1\|2827106_2827664_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223508
NZ_CP013458.1\|WP_186448640.1\|2820561_2820912_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013458.1\|WP_038748993.1\|2813828_2814485_-\|glutamine-ABC-transporter-permease-GlnP	unknown	unknown	gnl\|CDD\|181907
NZ_CP013458.1\|WP_038749000.1\|2810680_2812024_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|236027
NZ_CP013458.1\|WP_059670764.1\|2819099_2819948_-\|presqualene-diphosphate-synthase-HpnD	unknown	unknown	gnl\|CDD\|163278
NZ_CP013458.1\|WP_060356898.1\|2816039_2816747_-\|phosphorylase	unknown	unknown	gnl\|CDD\|235926
NZ_CP013458.1\|WP_038755506.1\|2823092_2823716_-\|chemotaxis-protein-CheC	unknown	unknown	gnl\|CDD\|381738
NZ_CP013458.1\|WP_059579765.1\|2810076_2810640_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|367130
NZ_CP013458.1\|WP_038748990.1\|2814549_2815302_-\|glutamine-ABC-transporter-substrate-binding-protein-GlnH	unknown	unknown	gnl\|CDD\|236540
NZ_CP013458.1\|WP_059670769.1\|2806235_2808869_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|274598
NZ_CP013458.1\|WP_038755504.1\|2823708_2824077_-\|response-regulator	unknown	unknown	gnl\|CDD\|381124
NZ_CP013458.1\|WP_060356901.1\|2797166_2803895_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187617
NZ_CP013458.1\|WP_060356897.1\|2816753_2818751_-\|squalene--hopene-cyclase	unknown	unknown	gnl\|CDD\|239222
NZ_CP013458.1\|WP_059642860.1\|2812020_2813091_-\|peptidase-C45	unknown	unknown	gnl\|CDD\|367486
NZ_CP013458.1\|WP_038755509.1\|2820965_2821871_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|215128
NZ_CP013458.1\|WP_060356900.1\|2803998_2805645_-\|acyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|214838
NZ_CP013458.1\|WP_060356899.1\|2808870_2809845_+\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|377309
NZ_CP013458.1\|WP_038755507.1\|2822160_2823096_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP013458.1\|WP_038748996.1\|2813103_2813832_-\|glutamine-ABC-transporter-ATP-binding-protein-GlnQ	unknown	unknown	gnl\|CDD\|181906
NZ_CP013458.1\|WP_060355730.1\|2824581_2826861_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|237425

Protein	Function_ID	Function_description	E-value
NZ_CP013458.1\|WP_038755500.1\|2827106_2827664_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	1.14682e-46
NZ_CP013458.1\|WP_038748993.1\|2813828_2814485_-\|glutamine-ABC-transporter-permease-GlnP	gnl\|CDD\|181907	PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed.	1.7546e-125
NZ_CP013458.1\|WP_038749000.1\|2810680_2812024_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|236027	PRK07483, PRK07483, aspartate aminotransferase family protein.	0
NZ_CP013458.1\|WP_059670764.1\|2819099_2819948_-\|presqualene-diphosphate-synthase-HpnD	gnl\|CDD\|163278	TIGR03465, HpnD, squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.	4.69322e-106
NZ_CP013458.1\|WP_060356898.1\|2816039_2816747_-\|phosphorylase	gnl\|CDD\|235926	PRK07077, PRK07077, phosphorylase.	2.89433e-97
NZ_CP013458.1\|WP_038755506.1\|2823092_2823716_-\|chemotaxis-protein-CheC	gnl\|CDD\|381738	cd17910, CheC_ClassII, chemotaxis protein CheC, Class II. This family contains class II CheC proteins found in proteobacteria, which diverge from class I CheCs in sequence conservation and lack critical well-conserved residues for CheD binding. These proteins are likely to be dedicated phosphatases. The class II cheC genes are not found in chemotaxis operons, but in operons containing more archetypical two-component signaling components, non-signaling operons, or as orphans. Thus, class II CheCs appear to be involved in non-chemotactic two component systems. Class II CheCs lack the first of the two phosphatase active sites of class I CheCs, and retain the second active site of class I CheCs.	4.5344e-45
NZ_CP013458.1\|WP_059579765.1\|2810076_2810640_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|367130	pfam02627, CMD, Carboxymuconolactone decarboxylase family. Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.	0.00463384
NZ_CP013458.1\|WP_038748990.1\|2814549_2815302_-\|glutamine-ABC-transporter-substrate-binding-protein-GlnH	gnl\|CDD\|236540	PRK09495, glnH, glutamine ABC transporter periplasmic protein; Reviewed.	5.97356e-161
NZ_CP013458.1\|WP_059670769.1\|2806235_2808869_+\|MMPL-family-transporter	gnl\|CDD\|274598	TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.	0
NZ_CP013458.1\|WP_038755504.1\|2823708_2824077_-\|response-regulator	gnl\|CDD\|381124	cd17593, REC_CheC-like, phosphoacceptor receiver (REC) domain of uncharacterized response regulators containing a CheC domain. This subfamily is composed of uncharacterized proteins containing an N-terminal REC domain and a C-terminal CheC domain that may function as the output/effector domain of a response regulator. CheC is a CheY-P phosphatase, affecting the level of phosphorylated CheY which controls the sense of flagella rotation and determine swimming behavior of chemotactic bacteria. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.89447e-55
NZ_CP013458.1\|WP_060356901.1\|2797166_2803895_-\|SDR-family-oxidoreductase	gnl\|CDD\|187617	cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs. This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	9.02242e-99
NZ_CP013458.1\|WP_060356897.1\|2816753_2818751_-\|squalene--hopene-cyclase	gnl\|CDD\|239222	cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.	0
NZ_CP013458.1\|WP_059642860.1\|2812020_2813091_-\|peptidase-C45	gnl\|CDD\|367486	pfam03417, AAT, Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.	4.08617e-53
NZ_CP013458.1\|WP_038755509.1\|2820965_2821871_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|215128	PLN02211, PLN02211, methyl indole-3-acetate methyltransferase.	2.2439e-15
NZ_CP013458.1\|WP_060356900.1\|2803998_2805645_-\|acyltransferase-domain-containing-protein	gnl\|CDD\|214838	smart00827, PKS_AT, Acyl transferase domain in polyketide synthase (PKS) enzymes.	2.56639e-56
NZ_CP013458.1\|WP_060356899.1\|2808870_2809845_+\|VacJ-family-lipoprotein	gnl\|CDD\|377309	pfam04333, MlaA, MlaA lipoprotein. MlaA is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. MlaA is required for the intercellular spreading of Shigella flexneri. It is attached to the outer membrane by a lipid anchor.	9.71936e-101
NZ_CP013458.1\|WP_038755507.1\|2822160_2823096_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.96878e-67
NZ_CP013458.1\|WP_038748996.1\|2813103_2813832_-\|glutamine-ABC-transporter-ATP-binding-protein-GlnQ	gnl\|CDD\|181906	PRK09493, glnQ, glutamine ABC transporter ATP-binding protein GlnQ.	2.00311e-173
NZ_CP013458.1\|WP_060355730.1\|2824581_2826861_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	2.15805e-92

>NZ_CP013458.1|WP_038748990.1|2814549_2815302_-|glutamine-ABC-transporter-substrate-binding-protein-GlnH
MGRRSFIKTVVAVALAGASLASAHAKELVVGTDTSFMPFEFKQGDKYVGFDLDLWAEIAKDAGWAYKIQPMDFAGLIPALQTQNIDVALSGMTIKEERKKAIDFSDPYYDSGLAAMVQTGNTTIKSIDDLNGKVIAAKTGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGHVKVAGTPVSGDKYGIGFPKGSPLVAKVNAELAKMKADGRYAKIYKKWFGSEPPKS
>NZ_CP013458.1|WP_038748993.1|2813828_2814485_-|glutamine-ABC-transporter-permease-GlnP
MQFDWSAIWAALPDLMDGVRLTVFIAFFGLAGGFLVGMIAGMFRAYGPAALNVLAQVYIELIRGTPIVVQVMFLYFALPLLAHIRIDGLTAAVVAITLNSGAYLAEVVRGALLSIPKGLTEAGLAMGLPMPRVLVKIVGPLAFRRLIPPLGNQCIVSLKDTSLFIVIGVGELTRKGQEIIAGNFQAVEIWTAVAAIYLVLTGVMTLTLRFVEKRMRIL
>NZ_CP013458.1|WP_038748996.1|2813103_2813832_-|glutamine-ABC-transporter-ATP-binding-protein-GlnQ
MSMVEFRSVSKSFGHVPVLKDINLRIDAGEVVVVVGPSGSGKSTMLRCINALEKITGGDLLVDGQSVKGKAAVIHNIRLEAGMVFQQFNLFPQMTALENVMFGPIQVRGASRAQARDQAVALLAKVGLEARANHYPSELSGGQQQRVAIARALAIKPKLMLFDEPTSALDPELRHEVLKVMRDLANEGMTMIVVTHEIGFAKQVGTRLLFMDQGGIAEDGDPKTLIDQPPTPRLREFLKHVS
>NZ_CP013458.1|WP_059642860.1|2812020_2813091_-|peptidase-C45
MKFLTPAVVTGSPHDIGRQLGELARPAMDAYFSQSSAWRAVARWRGHPFVAELRRAAEAAFPALVAELDGIAAGLGWRAEDVFVWNCRGELIHNAPDGCTTLAVRTPRERMIAHNEDGDPHLRGKCRLVDVRPDGKPGFVSFYYPGSLPGHTFAVNRAGLVQTINNVRIRRPAAGVPRMILARAVLDAVSLDGALRVLRDTPRASGFHHTLGCAGDARVVSVEASVARTSTLDVDGVYGHANHLIHPGCDGEAQIVTASSADRQARLAQLLPPLGGAADASALWRVLADRAGDGLPIYRDDPRDPDDENTLATALFSIGDDGVAFEVREQGSVRFQQFVPRDPQRPSALRHGQGHA
>NZ_CP013458.1|WP_038749000.1|2810680_2812024_-|aspartate-aminotransferase-family-protein
MTTVFHRAPRANLPVAIAGDGIEIIDSTGKRYIDACGGAAVSCLGHGNQRVIDAIKRQAQQLPYAHTSFFTTQPAEELADRLVAAAPAGLEHVYFVSGGSEAIEAALKLARQYFVERGEPARRHFIARRQSYHGNTLGALAIGGNAWRREPFLPLLIEAHHVSPCYAYREQRADETEEAFAQRLADELESKILELGPDTVAAFVAETVVGATAGAVPPVREYFRKIRAVCDKYGVLLILDEIMSGMGRTGYLFACEEDGVAPDILTIAKGLGAGYQPIGATLVSDAIYRTIVDGSGFFQHGHTYIGHASACAAALEVQRVIAEDRLLDNVKARGEQLRARLRERQADHPHIGDVRGRGLFVGVELVRERDTKAPFDPKLKLHALVKREAMQRGLMVYPMGGTVDGNFGDHILLAPPFICTAPQIDTIVERLGDAIDAALASIGAAAR
>NZ_CP013458.1|WP_059579765.1|2810076_2810640_-|carboxymuconolactone-decarboxylase-family-protein
MTKAKMRLPEFHRETATDEQKAVLDEILSGPRGNLNGPFLGWIASPELAQHAQRLGAFCRYRTGLPLRLSELAILVTAARWRSQAEWHIHHPIALEAGVPAAVAEAIRTCTAPAFDEADDALIFRFATELYETKRVCDATYDEAVARFGHQVVVNLVALLGYYALVAMTLNVFAMRADGQTVLPFAE
>NZ_CP013458.1|WP_060356899.1|2808870_2809845_+|VacJ-family-lipoprotein
MRITASALAVCLLASGCATGPNRHPGDPLEPMNRAVFKFNDAVDSTIAVPIAKGYQKVTPTPLRTAISNFFSNLGDLGNIANNLLQLRITDATEDVMRVAMNSLFGVAGLIDVATLAGLPKHHQDFGLTLARWGVPAGPYLVLPIFGPSSIRDGVGRAVDVRFNLLNYIEPAARNPMYIAQFISARSDLLGATDLLQQAALDKYSFVRDAYVQQRRSLTYHGKSEEDSLPNYNEPGGEGAGGNAPGGLPQYEDPGEGAGGMPSGGAQGGAREPAGLPRYQDPGDAGASGAAPAAASATAPTPASAAAPAEPASAPAANASPKTN
>NZ_CP013458.1|WP_059670769.1|2806235_2808869_+|MMPL-family-transporter
MLTSVLVRLVAWSVRRPIWVVVLSLVAAALSGVYVAHHFKINTDISKLVENDPQWAALGNAIDDAFPQRSQTILAVVEAPAPEFATAAADALAEGLRRETEAGRIGQVSEPAGGPLFEHNGLLFLPEQDVATTTAQLASARPLVNVLAKDPSIAGLATTLSTTLGVPLQSGQVKLSGMAKLLSRSAATVDDVLAGKPAAFSWRALVDADAARAPARAFVTVQPVVNYGALKAGEQASRTIRATARALELDKRFGAAVRLTGEQPLADEEFASVQDGALVNGIATLAIVLVILWIALRSKRMIAAVFVTLFVGLVVTAALGLMMVGSLNMISVAFMVLFVGLGVDFAIQYGVKYREERHRYPNLDHALVGAAHAMGMPLTLATAAVAASFFSFLPTAYRGVSELGLIAGVGMFVALFTTLTLLPALLRLFAPPGERKPPGFPRLAPVDDYLDHHRKPILIGTLAVVIGALPLLAHLRFDFNPLHLKDPSSESMATLLALKDSPEASVNDVSMLAPSLAAADAAAKRLDALPEVGRTTTLSTFIPDAQPQKLATIAAAARDLLPALTQPAAAPASDAQRVAALKRASNLLEYASEDYPGPGAAAAKHLSESLAKLAAADAATRDRAEHAFSAPLRIALNQLAMLLQPSEITRENLPPQIARDWIAPGGRALVQISPKVPKGVDPGDDAMLRRFAKAVKAAEPGAIGGPISILHSADTIIRAFLQAAALSVISITALLWITLRRFGDVLRTLVPLLVSGVVTLELCVLFGMPLNFANIIALPLMLGVGVAFKVYFVMAWRAGQTGLLQSSLTHAVLFSAATTATAFGSLWLSHHPGTASMGRLLALALSCTLIGAVVFQPVLMGKPRTKRVTNQSQGIDE
>NZ_CP013458.1|WP_060356900.1|2803998_2805645_-|acyltransferase-domain-containing-protein
MAQVAFLFPGQGAFYAGATRALSGAYPVVQRAMQAIDAVSVRRLRRPLLATVWDEHIGVEDLLQYAPDLLQLAIYATSVSYFEALRARGVRPDVLVGHSFGEVAALACAGAFSFEQGADIVCDRIDALREAAPADGRMAAVGASPDAVRAHLAACFRGAPQWRPGRVQIAVENHSSQTVVSGAREYVDEFTAYCARNNISAQILNSPYAFHHDDLENVRIEFGRRLKAYKNKALEYPVYSPILNRYYAAADDLGACLARHLVLPVRFGDGVARLKAAGIGALVECGALNALSRIAVRALGPGAIKTFSGASSVGGELGGLENVLAYFNGGSVMNDDIRASNLQLDFDEFWRNSGPGIVEKIKGELKRFFDARGLQATPAPHIVTARGAAAGFAPVAPVASAAPAVPTAPAAPVTQATPAVAPAAPAAPVAHAAHAAPVMQAPAAPGAGAEPADAPAARVPRDRLFAELVAIYAEAMEYPVEVFTETVELEAELGIDSVKQTEIIQRISARYGLPPLPANFRAGDFKAMGQIVDFVYEHQGQAAALVTS
>NZ_CP013458.1|WP_060356901.1|2797166_2803895_-|SDR-family-oxidoreductase
MSNSYLLGKRVLVTGGAKNVGKAICRRFAEEGAHVIVNFFHSLDASKETAAELRALGATVDVVRASVAQPAQVERMFDEIEAKYGKLDILVNNAASGALLPVDDIEAAHFDRALDTNLKGAFWCARRAARLMARAGGGAIVNVSSVGSTLVPANYLVVGTAKAALESLTRYLAVEYASLGIRVNGASSTLIDGDVAAQFPDPDNTKRSSIAATPLGRLATAEDLADVVLFLASDAARWITGQVIVADGGLSLCSEALSPRREWSGAANGVQGGGQGGDAAPSAAAFASRASVGAAAAPVASHVADVGVATAAMAGVGAAGAAAVSAIARNVASERASAPSNDSASAHAPVEPSASASGGRADVSASSTGSALPRVSSPASAQAGAGIDAPSSFAVAASHAFADANVADANGVRPATPAGEIDAPHAERASDDTEADDTEADDIAVVGMGVALPGASDPEAFWQALLNGPELFGNVPPDRWDYRSFYSPDSSAEDKSYQSRSVFIERFEPEARLRAEIEAAAAPDELTTLWLRHSLRQALDGVRVRAGDRTSFLVGYTADGSQHLEEGMVLAAMRARLRDALDETGASPDERESRIAQIDAVLRARYARGTGELSEYFPHRVGLNAMRGVLPDDAEYMMVDTACSSSLYSVDLGIKSLLAGKHDVVACGGAFALAPRGSILFSKLHGLSKSGEVRPLDKACDGVLFADGAGVVILKRLKRALADGDRVLGVLKAFGSSSDGKGKAIYAPNSAGQSIAIERAYRQTDVPKAAVDWVVAHATGTPAGDLAEFQSLRDMLKRDRPVYVTSNKSLVGHTGWAAGVVSLIQVLLALEHGRIPPQHRFSEPPREFDIGASGFTIPTRAVDWPRKADAARVAAVSGFGFGGTNGHLIVCEYRPDLGASMPAARVNREPLAIVGWSAKFPGLDGRDAIAAWLNGAGAAPGASFGLTYPLPSFDRVRMPPAVLRALDRCQLMALDAAHDMREQLRDYWSGHANTIGVVMGHMGPTRNAALYASRCYLDDIATAVRASFDDASRAPLDDALARVAEHTKRLVPPTTENSFPGMMPNVIPARVANYHDLHGMNMTVDAGHASTLAAFEVASRFLRSGELDMVIVGGINGNSADEVQPAFDRPLAEGIVLFAVTTKAQADAAGLPALAWIESGREFADAAAAALAPRDAQGRAVTYAGADGALAVLRALVGREDAASIAFGNDRDRVRFGLRVDRNAPPVSGDGVRARDAADASGLSTSVPVPVPTSTSTSTSTSTSTSPAPVSSHLSEPSSTPAVASAPPAHLVAPLATTVHAEPPVAVATAEPIAGASADKRVPIPSTLKATDVAADGEPLGVARYRIDLQETPWHAGAGAIAYLPAGSVVVTDAPELLDGIGMLPADLLVLSTRATAFARARLVVVDTLGEAALQGLIPAGTRHVRLLTSLRAGALAPDRSSAPAPERLKLHDLAFLALKQCYDGVAQQGSFIALLLDAVKDDVLHPDAGMFTGLVKALAIELPHARSLAVLTDDADIRHGVARAERESGAQHLLPVVALCGGRRLTPRVTRDAGELPADGFARLGPDSVVVAFGGARGITAELMKAVAEHFQPTIHLIGSSALDAYGPDVFSGSDEAFARRRPDYIREQKARHPHLPLPAIIKAFERQVEARAARRNIDVMKSYCGPNKVFYLRADVLDAGSVREAVGRIAAAGQPIDLVVNAAGLNRSASVNVKSFDDFVAVRDIKIRGYWNVRDAFGAAQPRAWCNFGSFIGLTGQAGETDYASGNDFLNTQAAYHRAALARDEFTIGWTLWRSVGLGANPVTRAFLEKSGLFTSMRTNEGIHHFLREINLTERAASSVHLGAAERRAIETHLPTFFDAPPASVRAASTQRPVQSASGAADAQAVVAAHAGHAAWPSPQSHPTPPPRERIAQPPSHDFYLGREVRRTSDSVTFERIFDLRTDAYLQHHVVNRFATLPGTFVPELAAEAAMKLLPGLRVVGFRDAAFRHFLRVYDAQRPSTKRIHAQVVGREGDAAVVQVRITGDVLAPNGQVLVQDKLHFEIKALVAPRHASAPAWPMRPDEPRTPVADPYHFESAPVRLTGMFVSTADTGVTASGKVARYQLNVAADDPVFSRFIVPSIMLDGLARVAVLNYVADDYIPLAAPVSIGRIELYESGNDCELARRYERIDLYATPRAFALEGAHGGNRFAAVRPDGRMLMEMSDVSGVVIGYVHRTTGAYATKGEVDALAARLATERETA
>NZ_CP013458.1|WP_060356898.1|2816039_2816747_-|phosphorylase
MASSGRSAAPVIAVAGMAFEARIARGAGVEAAYAARADRLERALAEAADAHGCAGIVSFGTAGGLAPDLAPGALIVADAVDGPFGVLDTDSAWSARIVAALAGTPVASRTRRGTVAAVGAPVVDAREKEMLHRAKGALAVDMESHIAGAFAAARGVPFAVCRAIVDPVWRTLPKAATAGLRDDGSTAILPILRELAKEPSQLGALLQVAGDARAARSTLVQARRAFERAGAWRIG
>NZ_CP013458.1|WP_060356897.1|2816753_2818751_-|squalene--hopene-cyclase
MNDMTEMQTLDAAAAPAAAAPAVAEGLDAAVARATDALLAAQNADGHWVYELEADSTIPAEYVLLVHYLGEEPNVELEQKIARYLRRIQQPEGGWPLFTDGAPNISASVKAYFALKVIGDDENAEHMQRARRAIHAMGGAEISNVFTRIQLALYGVVPWYAVPMMPVEVMLLPQWFPFHLSKVSYWARTVIVPLLVLNAKRPVAKNPRGVRIDELFKSAPVNTGLLPKQPHQRTGWFAFFRVVDGVLRLVDGLFPRYTRERAIRQAVAFVDERLNGEDGLGAIYPAMANAVMMYAALGYPEDHPNRAIARQSIEKLLVVGEEEAYCQPCLSPVWDTSLAAHALLETGDERAREAAVRGLDWLVPRQILDVRGDWISRRPHVRPGGWAFQYANPHYPDVDDTAVVVMAMDRVAKLDQTDAYREQIARAREWVVGMQSSDGGWGAFEPENTQYYLNNIPFSDHGALLDPPTADVSGRCLSMLAQLGETNASSEPARRAFDYILKEQEPDGSWYGRWGMNYIYGTWTALCALNAAGLGHDDPRVKRAAQWLLSIQNQDGGWGEDGESYKLNYRGYERASSTSSQTAWALLGLMAAGEADNPAVARGIDHLLGAQREHGLWDETRFTATGFPRVFYLRYHGYRKFFPLWALARYRNLKRANTTRVTVGM
>NZ_CP013458.1|WP_059670764.1|2819099_2819948_-|presqualene-diphosphate-synthase-HpnD
MAVSNPVVDDNETDAAAATSGSSFYLAMRILPAEQRDAMFQVYAFCRAVDDIADEGGPRTERAAQLDRWRADIDDCYAGKPRASLAPLAREIGKFGLHREDFHAMIDGMAMDAAEDICAPDEQTLDLYCDRVASSAGRLSVRIFGMPDEPGRVLSHHLGRALQLTNILRDIDDDAAINRCYLPRELLTREGIAITDPQTIARDPNLPRVCTTLVERARRHFAQADAVMDMSRRAQVRAPRIMSGAYRLILEAAVARGFAPPRAPLRKPRARMLLLAARYALF
>NZ_CP013458.1|WP_186448640.1|2820561_2820912_+|hypothetical-protein
MGLGLGVGVGVGVGVGVGVGVGVGVGVGVGFGVGFGIGIGFGFGFGFGFGFGFGFGFGFGFGFGFGVERTPSGTRCSVARNPRGAERSAVGARMPYARNKIPSRGSIKRDTAPIPH
>NZ_CP013458.1|WP_038755509.1|2820965_2821871_+|alpha/beta-fold-hydrolase
MPTEPRDTTADRRDPAASSPLPFVLVHGAWHGAWAYERVIPALAAHGHAALARDLPAHGINARFPASFFQRPLDAAAFASEPSPVAGTTLDDYVDHVLRTVDQARALGHEQVVLVGHSMGGIAITMAAERAPEKIAKLVYLAAFMPTAGTTGLDYVRAPENQGEMLAPLMMASPKATGALRMDPRSEDPAYRAAAKRALCDDASDADHTAIGHLLSCDVPAAPFATRIETTAARWGSIERHYIKCLRDRVLLPALQQRFVDEADALAPGNRTRVHTLDSSHSPFIAQPHAVADTLAAIARG
>NZ_CP013458.1|WP_038755507.1|2822160_2823096_-|diguanylate-cyclase
MNLLASLSDLVIERVSFGIFVLDREMKVLMWNRFMQDHSGVAAADVIGRNLFDCFPELPRAWLSRKIESVFQLGSFAFSSWEQRPYLFRFDHDRPITGGVDFMQQDCTFVPIARAREVEAVCVTISDVTHVSVMQREREEAVAKLQEYANRDGLTGIANRRFFEARLRDEFSRWQRYGGNLSVLLFDLDHFKTINDRFGHVVGDNVLRVMAQRVADVVRSQDTFGRFGGEEFALLLPCTSLDEAMQVAEKIRQTIGSTPIEAEGARVPVTASVGGAAAHVGALTHETLVNEADAALYRAKRQGRNCSVAFG
>NZ_CP013458.1|WP_038755506.1|2823092_2823716_-|chemotaxis-protein-CheC
MSETVLTAEQRDALQEIANLAMGRAAARLALLLGTFIELSVPRVRVVRAADVGRVLRDMTGIHDNVTAVRQGFRSDIKGEALMLCRSAGVGQLVSLVDDAYADGEFGTVTQAELMFDMANVLMGACVSSILDELGRTPVFSPPGLLGEDIALDDVFQPDVLAWSETLLLEVNFGVADDGARTHFVMLLAEDSIRHMSDALDTLLSSL
>NZ_CP013458.1|WP_038755504.1|2823708_2824077_-|response-regulator
MPLPIVIADDSLLARKLLTKALPADWDVDVNYASNGRDALMLYRDGKASVMFLDLTMPDMSGYEVLETLRGEDLNTFVIVVSADIQPMAQARVRELGAAAFVAKPVTSEALLPILKEYGLYV
>NZ_CP013458.1|WP_060355730.1|2824581_2826861_+|hybrid-sensor-histidine-kinase/response-regulator
MTPERPDASRSTPPDNDWEDDASFASGAPEHDFAVRRVTLIVMLVAAIVLPCVYVAVMAYNDMRTREATARDVTMRTVRVAEEHALKVFDLSETLDARIVDLVQDLDDAAVRNAEADIHDALNTIGGGYPQVASVSIFGASGMLLANSLYYPAPYASITNRDDFVGIRDGKVIEHISRVMPGPLKAANPGPVFNTGVARRHSDGTFAGMVSIALKSAYFNAFYRDLLGGADAPMSMALTRSDGAVLASYPPAPRGAPGDAAAQADSATPFGGAQGDQHAGVVRVKRDGDSEIVAYRQVGSYPVFVSCAYRTSAIRSAWYEHLSVLFISMFAPSAALWGVIWLSLKRLRAEEEAWERWQAEASMRRSIESAYRQSRKMEALGNLVGSVAHDFNNLLMIISSNVQIARRRGVQHLDTELAAIERALKNGQSLTRQLLGVARKQPLRSETIDIAQWLASCRELLKTSLGSKSTLAVDAQLDLWPVRVDVAELELAVINLAVNARDAMPQGGRFKISAHNITFRREDGFPLTGDFVRISVEDTGLGMPPDVLARAFEPLFTTKAKGMGTGLGLPQVFAFCERSGGLATIESEVGAGTSVRLYLPRTMELAPPAAAPDAIDKPAASTPAGLRILLVEDNGEVAAGTEALLELLGHQVTHAPNADDALRMLNEAGAEPTAPGAFDLVISDIHMPGTMNGIDLAEAIERGDAKLPVILITGYAEEFDRTRRVHARLLSKPFDIALLDDLLLKIQHERDMGHAGRAD
>NZ_CP013458.1|WP_038755500.1|2827106_2827664_-|NAD(P)H-dependent-oxidoreductase
MAYRIAVIVGSLRRESFNRALAQAVISLAPADLSFESIDIGSLPLYSQDYDADFPDVAKRFKQSIEAAQGLLFVTPEYNRSMPGVLKNALDWGSRPWGSNSWTGKPAAVLGTSPGATGTALAQQHLRNVLAYLDVPTLGQPEIFIKHDASKIDAQGNLVNDDTRKFLQGFVDRYADWVRRHAKPA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013458_3	3.2\|2815816\|18\|NZ_CP013458\|CRISPRCasFinder	2815816-2815833	18	NZ_CP013458.1	2815844-2815861	0	1.0
NZ_CP013458_3	3.2\|2815816\|18\|NZ_CP013458\|CRISPRCasFinder	2815816-2815833	18	NZ_CP013458.1	2815851-2815868	0	1.0
NZ_CP013458_3	3.2\|2815816\|18\|NZ_CP013458\|CRISPRCasFinder	2815816-2815833	18	NZ_CP013458.1	2815858-2815875	0	1.0
NZ_CP013458_1	1.18\|48497\|19\|NZ_CP013458\|CRT	48497-48515	19	NZ_CP013458.1	49211-49229	1	0.947
NZ_CP013458_3	3.2\|2815816\|18\|NZ_CP013458\|CRISPRCasFinder	2815816-2815833	18	NZ_CP013457.1	4065235-4065252	1	0.944
NZ_CP013458_1	1.1\|47783\|19\|NZ_CP013458\|CRT	47783-47801	19	NZ_CP013458.1	1309131-1309149	2	0.895
NZ_CP013458_1	1.1\|47783\|19\|NZ_CP013458\|CRT	47783-47801	19	NZ_CP013458.1	1555237-1555255	2	0.895
NZ_CP013458_1	1.1\|47783\|19\|NZ_CP013458\|CRT	47783-47801	19	NZ_CP013457.1	438972-438990	2	0.895
NZ_CP013458_1	1.1\|47783\|19\|NZ_CP013458\|CRT	47783-47801	19	NZ_CP013457.1	2059038-2059056	2	0.895
NZ_CP013458_1	1.1\|47783\|19\|NZ_CP013458\|CRT	47783-47801	19	NZ_CP013457.1	4004393-4004411	2	0.895
NZ_CP013458_1	1.3\|47867\|19\|NZ_CP013458\|CRT	47867-47885	19	NZ_CP013458.1	440683-440701	2	0.895
NZ_CP013458_1	1.3\|47867\|19\|NZ_CP013458\|CRT	47867-47885	19	NZ_CP013458.1	499095-499113	2	0.895
NZ_CP013458_1	1.3\|47867\|19\|NZ_CP013458\|CRT	47867-47885	19	NZ_CP013458.1	2739369-2739387	2	0.895
NZ_CP013458_1	1.3\|47867\|19\|NZ_CP013458\|CRT	47867-47885	19	NZ_CP013457.1	2192449-2192467	2	0.895
NZ_CP013458_1	1.3\|47867\|19\|NZ_CP013458\|CRT	47867-47885	19	NZ_CP013457.1	2490361-2490379	2	0.895
NZ_CP013458_1	1.3\|47867\|19\|NZ_CP013458\|CRT	47867-47885	19	NZ_CP013457.1	2790887-2790905	2	0.895
NZ_CP013458_1	1.3\|47867\|19\|NZ_CP013458\|CRT	47867-47885	19	NZ_CP013457.1	3615138-3615156	2	0.895
NZ_CP013458_1	1.6\|47993\|19\|NZ_CP013458\|CRT	47993-48011	19	NZ_CP013457.1	1155595-1155613	2	0.895
NZ_CP013458_1	1.9\|48119\|19\|NZ_CP013458\|CRT	48119-48137	19	NZ_CP013458.1	440683-440701	2	0.895
NZ_CP013458_1	1.9\|48119\|19\|NZ_CP013458\|CRT	48119-48137	19	NZ_CP013458.1	499095-499113	2	0.895
NZ_CP013458_1	1.9\|48119\|19\|NZ_CP013458\|CRT	48119-48137	19	NZ_CP013458.1	2739369-2739387	2	0.895
NZ_CP013458_1	1.9\|48119\|19\|NZ_CP013458\|CRT	48119-48137	19	NZ_CP013457.1	2192449-2192467	2	0.895
NZ_CP013458_1	1.9\|48119\|19\|NZ_CP013458\|CRT	48119-48137	19	NZ_CP013457.1	2490361-2490379	2	0.895
NZ_CP013458_1	1.9\|48119\|19\|NZ_CP013458\|CRT	48119-48137	19	NZ_CP013457.1	2790887-2790905	2	0.895
NZ_CP013458_1	1.9\|48119\|19\|NZ_CP013458\|CRT	48119-48137	19	NZ_CP013457.1	3615138-3615156	2	0.895
NZ_CP013458_1	1.11\|48203\|19\|NZ_CP013458\|CRT	48203-48221	19	NZ_CP013457.1	1155595-1155613	2	0.895
NZ_CP013458_1	1.19\|48539\|19\|NZ_CP013458\|CRT	48539-48557	19	NZ_CP013458.1	1432192-1432210	2	0.895
NZ_CP013458_1	1.19\|48539\|19\|NZ_CP013458\|CRT	48539-48557	19	NZ_CP013457.1	3442339-3442357	2	0.895
NZ_CP013458_1	1.19\|48539\|19\|NZ_CP013458\|CRT	48539-48557	19	NZ_CP013457.1	758869-758887	2	0.895
NZ_CP013458_1	1.19\|48539\|19\|NZ_CP013458\|CRT	48539-48557	19	NZ_CP013457.1	1021854-1021872	2	0.895
NZ_CP013458_1	1.19\|48539\|19\|NZ_CP013458\|CRT	48539-48557	19	NZ_CP013457.1	2170992-2171010	2	0.895
NZ_CP013458_1	1.21\|48623\|19\|NZ_CP013458\|CRT	48623-48641	19	NZ_CP013458.1	1208192-1208210	2	0.895
NZ_CP013458_1	1.21\|48623\|19\|NZ_CP013458\|CRT	48623-48641	19	NZ_CP013458.1	70591-70609	2	0.895
NZ_CP013458_1	1.21\|48623\|19\|NZ_CP013458\|CRT	48623-48641	19	NZ_CP013457.1	881344-881362	2	0.895
NZ_CP013458_1	1.21\|48623\|19\|NZ_CP013458\|CRT	48623-48641	19	NZ_CP013457.1	1990676-1990694	2	0.895
NZ_CP013458_1	1.30\|49001\|19\|NZ_CP013458\|CRT	49001-49019	19	NZ_CP013457.1	1155595-1155613	2	0.895
NZ_CP013458_1	1.32\|49106\|19\|NZ_CP013458\|CRT	49106-49124	19	NZ_CP013458.1	2529087-2529105	2	0.895
NZ_CP013458_1	1.32\|49106\|19\|NZ_CP013458\|CRT	49106-49124	19	NZ_CP013457.1	1736294-1736312	2	0.895

1. spacer 3.2|2815816|18|NZ_CP013458|CRISPRCasFinder matches to position: 2815844-2815861, mismatch: 0, identity: 1.0

aaagcggaaagcggaaag	CRISPR spacer
aaagcggaaagcggaaag	Protospacer
******************

2. spacer 3.2|2815816|18|NZ_CP013458|CRISPRCasFinder matches to position: 2815851-2815868, mismatch: 0, identity: 1.0

aaagcggaaagcggaaag	CRISPR spacer
aaagcggaaagcggaaag	Protospacer
******************

3. spacer 3.2|2815816|18|NZ_CP013458|CRISPRCasFinder matches to position: 2815858-2815875, mismatch: 0, identity: 1.0

aaagcggaaagcggaaag	CRISPR spacer
aaagcggaaagcggaaag	Protospacer
******************

4. spacer 1.18|48497|19|NZ_CP013458|CRT matches to position: 49211-49229, mismatch: 1, identity: 0.947

caacggtgcgaactcgacc	CRISPR spacer
caacggcgcgaactcgacc	Protospacer
******.************

5. spacer 3.2|2815816|18|NZ_CP013458|CRISPRCasFinder matches to position: 4065235-4065252, mismatch: 1, identity: 0.944

aaagcggaaagcggaaag	CRISPR spacer
aaagcggaaagcagaaag	Protospacer
************.*****

6. spacer 1.1|47783|19|NZ_CP013458|CRT matches to position: 1309131-1309149, mismatch: 2, identity: 0.895

gagcggcgacaacgcgacc	CRISPR spacer
gagcggcgaaaacgcgtcc	Protospacer
********* ****** **

7. spacer 1.1|47783|19|NZ_CP013458|CRT matches to position: 1555237-1555255, mismatch: 2, identity: 0.895

gagcggcgacaacgcgacc	CRISPR spacer
gagcgccgacaccgcgacc	Protospacer
***** ***** *******

8. spacer 1.1|47783|19|NZ_CP013458|CRT matches to position: 438972-438990, mismatch: 2, identity: 0.895

gagcggcgacaacgcgacc	CRISPR spacer
gagcggcgacgccgcgacc	Protospacer
**********. *******

9. spacer 1.1|47783|19|NZ_CP013458|CRT matches to position: 2059038-2059056, mismatch: 2, identity: 0.895

gagcggcgacaacgcgacc	CRISPR spacer
gagcgccgacaccgcgacc	Protospacer
***** ***** *******

10. spacer 1.1|47783|19|NZ_CP013458|CRT matches to position: 4004393-4004411, mismatch: 2, identity: 0.895

gagcggcgacaacgcgacc	CRISPR spacer
gagcgccgacaacgcgccc	Protospacer
***** ********** **

11. spacer 1.3|47867|19|NZ_CP013458|CRT matches to position: 440683-440701, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gagcggcgcgaatgcggcg	Protospacer
*******.******** **

12. spacer 1.3|47867|19|NZ_CP013458|CRT matches to position: 499095-499113, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gagcggcacgaacgcgacg	Protospacer
************.*** **

13. spacer 1.3|47867|19|NZ_CP013458|CRT matches to position: 2739369-2739387, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gaacggcacgaatgcggcg	Protospacer
**.************* **

14. spacer 1.3|47867|19|NZ_CP013458|CRT matches to position: 2192449-2192467, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gagcggcacgaacgcgccg	Protospacer
************.***.**

15. spacer 1.3|47867|19|NZ_CP013458|CRT matches to position: 2490361-2490379, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gatcagcacgaatgcgtcg	Protospacer
** *.**************

16. spacer 1.3|47867|19|NZ_CP013458|CRT matches to position: 2790887-2790905, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gagcggcgcgaatgcgacg	Protospacer
*******.******** **

17. spacer 1.3|47867|19|NZ_CP013458|CRT matches to position: 3615138-3615156, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gagcggcacgtatgcgacg	Protospacer
********** ***** **

18. spacer 1.6|47993|19|NZ_CP013458|CRT matches to position: 1155595-1155613, mismatch: 2, identity: 0.895

caacggcacgaacgcatcg	CRISPR spacer
catcggcccgaacgcatcg	Protospacer
** **** ***********

19. spacer 1.9|48119|19|NZ_CP013458|CRT matches to position: 440683-440701, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gagcggcgcgaatgcggcg	Protospacer
*******.******** **

20. spacer 1.9|48119|19|NZ_CP013458|CRT matches to position: 499095-499113, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gagcggcacgaacgcgacg	Protospacer
************.*** **

21. spacer 1.9|48119|19|NZ_CP013458|CRT matches to position: 2739369-2739387, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gaacggcacgaatgcggcg	Protospacer
**.************* **

22. spacer 1.9|48119|19|NZ_CP013458|CRT matches to position: 2192449-2192467, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gagcggcacgaacgcgccg	Protospacer
************.***.**

23. spacer 1.9|48119|19|NZ_CP013458|CRT matches to position: 2490361-2490379, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gatcagcacgaatgcgtcg	Protospacer
** *.**************

24. spacer 1.9|48119|19|NZ_CP013458|CRT matches to position: 2790887-2790905, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gagcggcgcgaatgcgacg	Protospacer
*******.******** **

25. spacer 1.9|48119|19|NZ_CP013458|CRT matches to position: 3615138-3615156, mismatch: 2, identity: 0.895

gagcggcacgaatgcgtcg	CRISPR spacer
gagcggcacgtatgcgacg	Protospacer
********** ***** **

26. spacer 1.11|48203|19|NZ_CP013458|CRT matches to position: 1155595-1155613, mismatch: 2, identity: 0.895

caacggcacgaacgcatcg	CRISPR spacer
catcggcccgaacgcatcg	Protospacer
** **** ***********

27. spacer 1.19|48539|19|NZ_CP013458|CRT matches to position: 1432192-1432210, mismatch: 2, identity: 0.895

gaacggcacgaacgcatcg	CRISPR spacer
gaacagcacgagcgcatcg	Protospacer
****.******.*******

28. spacer 1.19|48539|19|NZ_CP013458|CRT matches to position: 3442339-3442357, mismatch: 2, identity: 0.895

gaacggcacgaacgcatcg	CRISPR spacer
gaacggcacgcccgcatcg	Protospacer
**********  *******

29. spacer 1.19|48539|19|NZ_CP013458|CRT matches to position: 758869-758887, mismatch: 2, identity: 0.895

gaacggcacgaacgcatcg	CRISPR spacer
gaacggcgcgaacgcttcg	Protospacer
*******.******* ***

30. spacer 1.19|48539|19|NZ_CP013458|CRT matches to position: 1021854-1021872, mismatch: 2, identity: 0.895

gaacggcacgaacgcatcg	CRISPR spacer
gaacggcacggccgcatcg	Protospacer
**********. *******

31. spacer 1.19|48539|19|NZ_CP013458|CRT matches to position: 2170992-2171010, mismatch: 2, identity: 0.895

gaacggcacgaacgcatcg	CRISPR spacer
gaacgacacgaacccatcg	Protospacer
*****.******* *****

32. spacer 1.21|48623|19|NZ_CP013458|CRT matches to position: 1208192-1208210, mismatch: 2, identity: 0.895

caacggcacgaacgcgtcg	CRISPR spacer
caagggctcgaacgcgtcg	Protospacer
*** *** ***********

33. spacer 1.21|48623|19|NZ_CP013458|CRT matches to position: 70591-70609, mismatch: 2, identity: 0.895

caacggcacgaacgcgtcg	CRISPR spacer
caacggtacgaacgcggcg	Protospacer
******.********* **

34. spacer 1.21|48623|19|NZ_CP013458|CRT matches to position: 881344-881362, mismatch: 2, identity: 0.895

caacggcacgaacgcgtcg	CRISPR spacer
caacggcacgagcgcgacg	Protospacer
***********.**** **

35. spacer 1.21|48623|19|NZ_CP013458|CRT matches to position: 1990676-1990694, mismatch: 2, identity: 0.895

caacggcacgaacgcgtcg	CRISPR spacer
caacggcgcgtacgcgtcg	Protospacer
*******.** ********

36. spacer 1.30|49001|19|NZ_CP013458|CRT matches to position: 1155595-1155613, mismatch: 2, identity: 0.895

caacggcacgaacgcatcg	CRISPR spacer
catcggcccgaacgcatcg	Protospacer
** **** ***********

37. spacer 1.32|49106|19|NZ_CP013458|CRT matches to position: 2529087-2529105, mismatch: 2, identity: 0.895

taccggcgacagcgcgacg	CRISPR spacer
taccggcgaccgcacgacg	Protospacer
********** **.*****

38. spacer 1.32|49106|19|NZ_CP013458|CRT matches to position: 1736294-1736312, mismatch: 2, identity: 0.895

taccggcgacagcgcgacg	CRISPR spacer
tagcggcgacagcgcgccg	Protospacer
** ************* **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

659328 : 700195

Burkholderia_phage(50.0%)

transposase,tail,holin,integrase,tRNA,plate

attL 655405:655422|attR 686935:686952

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
655405:655422	attL	NA	NA	NA	NA
WP_059671323.1\|659328_660369_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.2e-93	53.4
WP_038743381.1\|660499_661723_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_004190342.1\|661802_662015_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_038743383.1\|662185_662632_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	8.8e-23	49.3
WP_060355646.1\|662726_664607_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	5.8e-68	36.9
WP_038743387.1\|664668_664992_-	hypothetical protein	NA	NA	NA	NA
WP_038743389.1\|665050_667093_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	4.2e-35	32.0
WP_145986859.1\|667474_667807_+	hypothetical protein	NA	NA	NA	NA
WP_038743391.1\|667994_668609_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_060355647.1\|668677_669325_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_060355648.1\|669386_670700_-	hypothetical protein	NA	NA	NA	NA
WP_038743397.1\|671198_671555_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	3.2e-44	77.7
WP_038743399.1\|671847_672462_-	DUF3164 family protein	Q6QIE4	Burkholderia_phage	2.7e-91	81.3
WP_052144968.1\|672535_672898_-	hypothetical protein	Q6QIE2	Burkholderia_phage	9.9e-25	62.6
WP_060355679.1\|672899_674174_-	AAA family ATPase	Q6QIE1	Burkholderia_phage	1.2e-157	69.3
WP_060355678.1\|674173_675973_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	1.8e-284	80.8
WP_038743842.1\|677086_677398_-	helix-turn-helix domain-containing protein	A4JWN4	Burkholderia_virus	9.1e-35	81.1
WP_156432513.1\|677394_677853_-	hypothetical protein	NA	NA	NA	NA
WP_038743404.1\|677899_678142_-	DNA-binding protein	Q6QID3	Burkholderia_phage	9.5e-32	90.0
WP_038743406.1\|678257_678701_+	helix-turn-helix transcriptional regulator	A4JWR8	Burkholderia_virus	6.0e-24	50.7
WP_059671327.1\|678766_679606_+	hypothetical protein	A4JWN9	Burkholderia_virus	2.1e-25	31.7
WP_038743408.1\|680205_680553_+\|holin	putative holin	Q6QIC8	Burkholderia_phage	4.5e-43	78.3
WP_059576497.1\|680555_681164_+	transglycosylase SLT domain-containing protein	Q6QIC7	Burkholderia_phage	3.1e-87	79.6
WP_038743410.1\|681160_681763_+	hypothetical protein	A4JWP5	Burkholderia_virus	2.6e-46	57.6
WP_038743412.1\|681759_682098_+	hypothetical protein	A4JWP6	Burkholderia_virus	1.1e-44	84.5
WP_059576390.1\|682094_682427_+	hypothetical protein	Q6QIC3	Burkholderia_phage	3.3e-51	83.6
WP_186448651.1\|682541_683129_+	hypothetical protein	NA	NA	NA	NA
WP_038743848.1\|683793_684258_+	hypothetical protein	Q6QIB2	Burkholderia_phage	3.8e-45	62.1
WP_038743417.1\|684254_684497_+	hypothetical protein	Q6QIB1	Burkholderia_phage	4.9e-20	62.5
WP_038743419.1\|684501_685935_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	4.7e-243	87.2
WP_038743421.1\|685936_686461_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	7.0e-88	91.4
WP_145986860.1\|686475_686718_-	hypothetical protein	NA	NA	NA	NA
WP_038743850.1\|686873_687203_+\|tail	phage tail assembly protein	Q6QIA8	Burkholderia_phage	3.7e-26	70.0
686935:686952	attR	NA	NA	NA	NA
WP_162836167.1\|687183_687333_+	hypothetical protein	Q6QIA7	Burkholderia_phage	1.0e-15	90.9
WP_060355650.1\|687707_690266_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	1.8e-205	53.5
WP_038743424.1\|690267_691170_+\|tail	phage tail protein	Q6QIA4	Burkholderia_phage	3.5e-71	66.0
WP_059642363.1\|691169_691376_+\|tail	tail protein X	A4JWL2	Burkholderia_virus	5.6e-25	76.8
WP_060355651.1\|691363_692584_+	Cro/Cl family transcriptional regulator	A4JWL3	Burkholderia_virus	2.4e-131	67.8
WP_038743429.1\|692580_693183_+\|plate	phage baseplate assembly protein V	Q6QIA1	Burkholderia_phage	1.4e-63	78.5
WP_145986861.1\|693225_693477_+	hypothetical protein	Q6QIA0	Burkholderia_phage	4.0e-09	52.1
WP_060355653.1\|693614_694697_+	hypothetical protein	A4JWL8	Burkholderia_virus	1.2e-68	56.9
WP_059670434.1\|694693_695137_+\|tail	phage tail protein	NA	NA	NA	NA
WP_059670435.1\|695336_695690_+	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	4.2e-52	82.1
WP_059642355.1\|695686_696838_+\|plate	baseplate J/gp47 family protein	A4JWL6	Burkholderia_virus	5.7e-167	79.1
WP_059576370.1\|696830_697412_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	2.3e-92	86.5
WP_060355654.1\|697411_699370_+\|tail	tail fiber protein	Q45YG3	Burkholderia_virus	1.7e-139	62.0
WP_060355655.1\|699385_700195_+\|tail	tail fiber assembly protein	E5E3Q6	Burkholderia_phage	8.1e-59	59.7

DBSCAN-SWA_2

1383455 : 1451820

Burkholderia_virus(52.94%)

protease,transposase,tail,capsid,head,holin,portal,lysis,terminase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038744916.1\|1383455_1385423_+\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	1.4e-104	42.7
WP_038744915.1\|1385472_1386072_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_157131076.1\|1386058_1386373_+	hypothetical protein	NA	NA	NA	NA
WP_038744914.1\|1386536_1387373_+	EamA family transporter	NA	NA	NA	NA
WP_060356632.1\|1387546_1388704_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_059582846.1\|1388739_1389534_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_038744911.1\|1390094_1390574_+	NUDIX hydrolase	A0A0E3JJF3	Streptomyces_phage	1.4e-13	42.1
WP_038744910.1\|1390570_1391026_+	nucleoside 2-deoxyribosyltransferase	NA	NA	NA	NA
WP_060356633.1\|1391027_1392014_+	thymidylate synthase	NA	NA	NA	NA
WP_038744908.1\|1392029_1392770_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_038744907.1\|1393006_1393807_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_060356634.1\|1393872_1395303_+	thiamine pyridinylase	NA	NA	NA	NA
WP_060819989.1\|1395381_1396191_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_186448660.1\|1396405_1396882_-	hypothetical protein	NA	NA	NA	NA
WP_038744901.1\|1397585_1398005_+	archease	NA	NA	NA	NA
WP_059670332.1\|1398018_1399452_+	RtcB family protein	A2RQD0	Archaeal_BJ1_virus	3.5e-105	46.0
WP_038744900.1\|1399509_1399770_+	hypothetical protein	NA	NA	NA	NA
WP_038744899.1\|1399911_1400616_+	hypothetical protein	NA	NA	NA	NA
WP_038744898.1\|1400796_1401096_+	GYD domain-containing protein	NA	NA	NA	NA
WP_038744936.1\|1401231_1402365_+	CapA family protein	S4VS02	Pandoravirus	4.7e-113	55.0
WP_060356637.1\|1402431_1405242_-	hsp70 family protein	A0A2H4UU19	Bodo_saltans_virus	2.4e-09	28.1
WP_038744896.1\|1405245_1407093_-	Hsp70 family protein	NA	NA	NA	NA
WP_059641298.1\|1407089_1407665_-	DUF2760 domain-containing protein	NA	NA	NA	NA
WP_060356638.1\|1408102_1408864_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_038744893.1\|1409440_1409908_+	ProQ/FinO family protein	NA	NA	NA	NA
WP_038744892.1\|1409969_1410299_+	H-NS histone family protein	NA	NA	NA	NA
WP_186448661.1\|1410903_1411440_+\|transposase	IS21 family transposase	A4JWX0	Burkholderia_virus	9.1e-91	90.4
WP_060356639.1\|1411450_1412551_-	phage late control D family protein	K4PAY4	Burkholderia_phage	1.7e-197	96.7
WP_060356640.1\|1412550_1412976_-\|tail	phage tail protein	A4JWS2	Burkholderia_virus	2.2e-71	98.6
WP_059641283.1\|1412993_1415873_-	hypothetical protein	A4JWS3	Burkholderia_virus	0.0e+00	69.8
WP_009914998.1\|1415875_1415992_-\|tail	GpE family phage tail protein	A0A089FGX3	Burkholderia_phage	8.3e-10	86.8
WP_059641280.1\|1416000_1416345_-\|tail	phage tail assembly protein	K4NXA3	Burkholderia_phage	6.7e-55	99.1
WP_014696837.1\|1416402_1416912_-\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	3.2e-93	98.8
WP_059641277.1\|1416927_1418100_-\|tail	phage tail sheath protein	A4JWS7	Burkholderia_virus	3.0e-219	98.2
WP_059641275.1\|1418156_1418825_-\|tail	tail fiber assembly protein	A4JWS8	Burkholderia_virus	2.8e-105	95.8
WP_060356641.1\|1418841_1421175_-	hypothetical protein	Q45YG3	Burkholderia_virus	0.0e+00	87.4
WP_059641269.1\|1421185_1421740_-\|tail	phage tail protein I	A4JWT0	Burkholderia_virus	4.3e-96	95.1
WP_060356642.1\|1421732_1422638_-\|plate	baseplate assembly protein	K4NZR5	Burkholderia_phage	1.8e-152	94.4
WP_060356643.1\|1422634_1422997_-	GPW/gp25 family protein	A4JWY3	Burkholderia_virus	1.4e-58	95.0
WP_059641262.1\|1422993_1423674_-\|plate	phage baseplate assembly protein V	K4NXJ5	Burkholderia_phage	5.1e-115	92.9
WP_060356662.1\|1423847_1424624_+	site-specific DNA-methyltransferase	K4NZW3	Burkholderia_phage	2.6e-131	92.3
WP_076830964.1\|1424784_1425180_+	hypothetical protein	NA	NA	NA	NA
WP_082744901.1\|1425211_1425679_-	phage virion morphogenesis protein	K4NZQ8	Burkholderia_phage	2.0e-73	94.2
WP_006027252.1\|1425675_1426092_-\|tail	phage tail protein	A4JWT7	Burkholderia_virus	1.6e-71	99.3
WP_059641257.1\|1426196_1426637_-\|lysis	LysB family phage lysis regulatory protein	K4NXJ2	Burkholderia_phage	1.8e-68	95.9
WP_059641255.1\|1426633_1427446_-	N-acetylmuramidase family protein	A4JWZ0	Burkholderia_virus	7.9e-147	97.0
WP_004524440.1\|1427442_1427715_-\|holin	phage holin family protein	K4NX91	Burkholderia_phage	8.8e-42	100.0
WP_004553021.1\|1427716_1428061_-	membrane protein	K4NZQ3	Burkholderia_phage	6.5e-50	99.1
WP_010112635.1\|1428075_1428282_-\|tail	tail protein X	K4PAW7	Burkholderia_phage	1.5e-30	98.5
WP_004524437.1\|1428278_1428530_-	hypothetical protein	K4NXI9	Burkholderia_phage	7.6e-40	100.0
WP_060356645.1\|1428529_1429009_-\|head	head completion/stabilization protein	K4NZV5	Burkholderia_phage	4.2e-79	96.9
WP_060356646.1\|1429108_1429798_-\|terminase	terminase endonuclease subunit	K4NX86	Burkholderia_phage	1.2e-100	88.2
WP_060356647.1\|1429794_1430808_-\|capsid	phage major capsid protein, P2 family	K4NZP8	Burkholderia_phage	8.3e-186	97.3
WP_060356648.1\|1430841_1431651_-\|capsid	GPO family capsid scaffolding protein	K4PAW2	Burkholderia_phage	3.0e-138	92.6
WP_060356663.1\|1431795_1433565_+\|terminase	terminase ATPase subunit family protein	A4JWQ1	Burkholderia_virus	0.0e+00	96.3
WP_060356649.1\|1433561_1434617_+\|portal	phage portal protein	A4JWQ2	Burkholderia_virus	3.3e-201	97.2
WP_060356650.1\|1434660_1435017_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.0e-42	100.0
WP_006027262.1\|1435019_1435316_-	type II toxin-antitoxin system RelE/ParE family toxin	A4JWV2	Burkholderia_virus	5.6e-50	99.0
WP_059641242.1\|1435961_1437077_-	DUF3396 domain-containing protein	A4JWV3	Burkholderia_virus	2.3e-213	97.6
WP_060356651.1\|1437091_1437829_-	VRR-NUC domain-containing protein	A4JWV4	Burkholderia_virus	1.5e-128	95.9
WP_006027265.1\|1437825_1438359_-	PAAR domain-containing protein	A4JWV5	Burkholderia_virus	7.9e-95	97.7
WP_009914987.1\|1438461_1438584_-	hypothetical protein	A4JWV6	Burkholderia_virus	5.0e-13	97.5
WP_009914986.1\|1438817_1439471_-	AAA family ATPase	A4JWV7	Burkholderia_virus	5.4e-114	100.0
WP_004532731.1\|1439560_1439767_-	ogr/Delta-like zinc finger family protein	A4JWV8	Burkholderia_virus	8.7e-34	100.0
WP_059641237.1\|1439763_1440030_-	ogr/Delta-like zinc finger family protein	A4JWV9	Burkholderia_virus	2.9e-42	96.5
WP_059641234.1\|1440045_1441839_-	replication endonuclease	A4JWW0	Burkholderia_virus	0.0e+00	92.0
WP_059641232.1\|1441838_1442045_-	hypothetical protein	A4JWW1	Burkholderia_virus	3.1e-31	97.1
WP_186448606.1\|1443452_1444862_-	DNA cytosine methyltransferase	Q6V7R9	Burkholderia_virus	7.0e-66	38.5
WP_006027274.1\|1445490_1445628_-	hypothetical protein	A4JWW4	Burkholderia_virus	6.2e-20	97.8
WP_009897093.1\|1445855_1446077_-	hypothetical protein	A4JWW6	Burkholderia_virus	1.6e-38	100.0
WP_144411887.1\|1446289_1446790_-	hypothetical protein	NA	NA	NA	NA
WP_059641219.1\|1446786_1447656_-	DUF550 domain-containing protein	R4JG80	Burkholderia_phage	2.3e-104	71.5
WP_059641215.1\|1448035_1448374_+	helix-turn-helix domain-containing protein	A4JWW9	Burkholderia_virus	2.0e-56	99.1
WP_059645659.1\|1449003_1450242_-	MFS transporter	NA	NA	NA	NA
WP_082758429.1\|1450254_1451820_-	proline dehydrogenase	A0A1D8KJL5	Synechococcus_phage	8.7e-33	27.5

DBSCAN-SWA_3

1497019 : 1554865

Stx2-converting_phage(46.15%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059646534.1\|1497019_1498111_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_082759340.1\|1498220_1499525_+	amidase	NA	NA	NA	NA
WP_059671102.1\|1500277_1500682_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.2e-05	27.8
WP_059584214.1\|1500678_1501023_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.7e-40	70.4
WP_059584212.1\|1501053_1502607_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.7e-151	55.0
WP_100185219.1\|1502836_1503923_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.2e-43	36.4
WP_060819968.1\|1504439_1505456_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_059646546.1\|1505474_1505927_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_059646543.1\|1506462_1507308_+	ABC transporter permease	NA	NA	NA	NA
WP_059646540.1\|1507294_1508149_+	ABC transporter permease	NA	NA	NA	NA
WP_059646537.1\|1508145_1509177_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_059584212.1\|1509939_1511493_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.7e-151	55.0
WP_059584214.1\|1511523_1511868_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.7e-40	70.4
WP_059671102.1\|1511864_1512269_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.2e-05	27.8
WP_059670082.1\|1513085_1513865_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	6.5e-21	35.0
WP_059646555.1\|1513877_1514630_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_059646558.1\|1514647_1515322_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_060356095.1\|1515397_1516390_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_059646564.1\|1516439_1516733_-	DUF2325 domain-containing protein	NA	NA	NA	NA
WP_038744870.1\|1517619_1518105_-	YbaK/EbsC family protein	NA	NA	NA	NA
WP_038744869.1\|1518204_1519179_-	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	1.6e-48	37.2
WP_081989383.1\|1519366_1519855_+	adenosine-specific kinase	NA	NA	NA	NA
WP_186448670.1\|1520315_1520744_-	hypothetical protein	NA	NA	NA	NA
WP_060356094.1\|1520910_1521192_+	hypothetical protein	NA	NA	NA	NA
WP_060356093.1\|1521533_1522901_+	TolC family protein	NA	NA	NA	NA
WP_060356092.1\|1522925_1524386_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_060356091.1\|1524459_1527693_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_060356090.1\|1527699_1528383_+	heavy metal response regulator transcription factor IrlR	W8CYM9	Bacillus_phage	1.3e-36	37.3
WP_059646581.1\|1528379_1529771_+	heavy metal sensor histidine kinase IrlS	W8CYF6	Bacillus_phage	2.0e-20	28.8
WP_038744862.1\|1529903_1530176_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_085740685.1\|1530511_1531732_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	7.5e-234	96.3
WP_060356610.1\|1532231_1532480_+	hypothetical protein	NA	NA	NA	NA
WP_060356540.1\|1532808_1534260_+	MFS transporter	NA	NA	NA	NA
WP_038744860.1\|1534911_1536174_+	monooxygenase	NA	NA	NA	NA
WP_059582318.1\|1536261_1536585_-	hypothetical protein	NA	NA	NA	NA
WP_059582322.1\|1536880_1537594_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_186448610.1\|1537807_1538155_-	hypothetical protein	NA	NA	NA	NA
WP_052145016.1\|1538227_1539259_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_060356541.1\|1539255_1541109_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-11	26.1
WP_038746782.1\|1541105_1542185_+	ABC transporter permease	NA	NA	NA	NA
WP_060356542.1\|1542177_1543155_+	ABC transporter permease	NA	NA	NA	NA
WP_100185449.1\|1543305_1544175_-	hypothetical protein	NA	NA	NA	NA
WP_060356543.1\|1544264_1546925_-	TonB-dependent receptor	NA	NA	NA	NA
WP_060356544.1\|1547039_1548044_-	FecR domain-containing protein	NA	NA	NA	NA
WP_060356545.1\|1548040_1548550_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_059582355.1\|1549441_1550266_-	anti-sigma factor	NA	NA	NA	NA
WP_038746811.1\|1550262_1550784_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_060820438.1\|1550799_1550946_-	hypothetical protein	NA	NA	NA	NA
WP_059582366.1\|1551389_1552319_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_038746816.1\|1552479_1553184_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_038746973.1\|1553329_1553554_-	hypothetical protein	NA	NA	NA	NA
WP_145986885.1\|1553550_1553901_-	hypothetical protein	NA	NA	NA	NA
WP_060356546.1\|1553992_1554865_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013457

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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2. NZ_CP013458

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection