CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014002	Synechococcus sp. PCC 73109 plasmid unnamed4, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	2 crisprs	WYL,cas8b5,cas7,cas5,cas3,cas6,cas4,cas1,cas2	0	23	0	0
NZ_CP013999	Synechococcus sp. PCC 73109 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP014001	Synechococcus sp. PCC 73109 plasmid unnamed3, complete sequence	0 crisprs	cas3	0	0	0	0
NZ_CP013998	Synechococcus sp. PCC 73109, complete genome	0 crisprs	csa3,cas3,DinG,Cas14u_CAS-V,Cas14c_CAS-V-F	0	0	0	0
NZ_CP014000	Synechococcus sp. PCC 73109 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0	0	0

1. NZ_CP014003

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014003_1

• CRISPR_ID: NZ_CP014003_1
• CRISPR_location: 38-798
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 10 spacers

Consensus repeat of NZ_CP014003_1

Consensus_repeat	Method
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	PILER-CR
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CRISPRCasFinder
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	CRT

spacers of NZ_CP014003_1

>1.1|75|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
CCAAGCTTTCTATCAGGCTTCTGATTGACCCAACG
>1.2|147|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
TTATGGCGAGTCATCCGGGGACAAGAGTGCGGTTT
>1.3|219|39|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
ACGGCGGGGGGGGCGCGAGCACAGAAGTTATTGCTGTGG
>1.4|295|38|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
CACAATGCGATGCGATTGAGTTTTGACGCGGGGCAATT
>1.5|370|33|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
TTACGAAAAGTGCCACCCGGCCAAAGAGAAAAA
>1.6|440|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
AAGCAAGTGGTGAAGCAGAAACCCGCTCTGTGACT
>1.7|512|34|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
ATCGGCCAATTACCAGGGGGAAACTATCTGTCTT
>1.8|583|36|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
TAACTCCATATTCCCTGGTTTTGTGTGTTGACTTGG
>1.9|656|34|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
TCATTTGCGCCATTGTTTTTCCTCAATTAGAAAG
>1.10|727|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
CAGTACGAGGCAGTGGGGGGAACCAGTGATTTAGA

CRISPR arrays and Neighbor proteins around NZ_CP014003_1

CRISPR arrays

The CRISPR arrays of NZ_CP014003_1

>merge|NZ_CP014003|1|38-798|PILER-CR,CRISPRCasFinder,CRT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAACCCAAGCTTTCTATCAGGCTTCTGATTGACCCAACGCTTTCTAACCACTAAATCCCGATCACGGGACTGAAACTTATGGCGAGTCATCCGGGGACAAGAGTGCGGTTTCTTTCTAACCACTAAATCCCGATCACGGGACTGAAACACGGCGGGGGGGGCGCGAGCACAGAAGTTATTGCTGTGGCTTTCTAACCACTAAATCCCGATCACGGGACTGAAACCACAATGCGATGCGATTGAGTTTTGACGCGGGGCAATTCTTTCTAACCACTAAATCCCGATCACGGGACTGAAACTTACGAAAAGTGCCACCCGGCCAAAGAGAAAAACTTTCTAACCACTAAATCCCGATCACGGGACTGAAACAAGCAAGTGGTGAAGCAGAAACCCGCTCTGTGACTCTTTCTAACCACTAAATCCCGATCACGGGACTGAAACATCGGCCAATTACCAGGGGGAAACTATCTGTCTTCTTTCTAACCACTAAATCCCGATCACGGGACTGAAACTAACTCCATATTCCCTGGTTTTGTGTGTTGACTTGGCTTTCTAACCACTAAATCCCGATCACGGGACTGAAACTCATTTGCGCCATTGTTTTTCCTCAATTAGAAAGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCAGTACGAGGCAGTGGGGGGAACCAGTGATTTAGACTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

>NZ_CP014003|1|1|38-798|PILER-CR
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	CCAAGCTTTCTATCAGGCTTCTGATTGACCCAACG
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TTATGGCGAGTCATCCGGGGACAAGAGTGCGGTTT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	ACGGCGGGGGGGGCGCGAGCACAGAAGTTATTGCTGTGG
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	CACAATGCGATGCGATTGAGTTTTGACGCGGGGCAATT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TTACGAAAAGTGCCACCCGGCCAAAGAGAAAAA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AAGCAAGTGGTGAAGCAGAAACCCGCTCTGTGACT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	ATCGGCCAATTACCAGGGGGAAACTATCTGTCTT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TAACTCCATATTCCCTGGTTTTGTGTGTTGACTTGG
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TCATTTGCGCCATTGTTTTTCCTCAATTAGAAAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CAGTACGAGGCAGTGGGGGGAACCAGTGATTTAGA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

>NZ_CP014003|1|1|38-798|CRISPRCasFinder
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	CCAAGCTTTCTATCAGGCTTCTGATTGACCCAACG
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TTATGGCGAGTCATCCGGGGACAAGAGTGCGGTTT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	ACGGCGGGGGGGGCGCGAGCACAGAAGTTATTGCTGTGG
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	CACAATGCGATGCGATTGAGTTTTGACGCGGGGCAATT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TTACGAAAAGTGCCACCCGGCCAAAGAGAAAAA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AAGCAAGTGGTGAAGCAGAAACCCGCTCTGTGACT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	ATCGGCCAATTACCAGGGGGAAACTATCTGTCTT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TAACTCCATATTCCCTGGTTTTGTGTGTTGACTTGG
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TCATTTGCGCCATTGTTTTTCCTCAATTAGAAAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CAGTACGAGGCAGTGGGGGGAACCAGTGATTTAGA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

>NZ_CP014003|1|1|38-798|CRT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	CCAAGCTTTCTATCAGGCTTCTGATTGACCCAACG
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TTATGGCGAGTCATCCGGGGACAAGAGTGCGGTTT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	ACGGCGGGGGGGGCGCGAGCACAGAAGTTATTGCTGTGG
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	CACAATGCGATGCGATTGAGTTTTGACGCGGGGCAATT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TTACGAAAAGTGCCACCCGGCCAAAGAGAAAAA
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	AAGCAAGTGGTGAAGCAGAAACCCGCTCTGTGACT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	ATCGGCCAATTACCAGGGGGAAACTATCTGTCTT
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TAACTCCATATTCCCTGGTTTTGTGTGTTGACTTGG
CTTTCTAACCACTAAATCCCGATCACGGGACTGAAAC	TCATTTGCGCCATTGTTTTTCCTCAATTAGAAAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CAGTACGAGGCAGTGGGGGGAACCAGTGATTTAGA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014003.1|WP_062437150.1|11892_12465_-|K(+)-transporting-ATPase-subunit-C	unknown	unknown	gnl|CDD|184447
NZ_CP014003.1|WP_062436956.1|19611_20346_+|peptidylprolyl-isomerase	unknown	unknown	gnl|CDD|223831
NZ_CP014003.1|WP_012305522.1|8148_8658_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP014003.1|WP_030008170.1|2242_2584_-|DUF86-domain-containing-protein	unknown	unknown	gnl|CDD|225236
NZ_CP014003.1|WP_012305531.1|10724_11831_-|sensor-histidine-kinase-KdpD	unknown	unknown	gnl|CDD|225115
NZ_CP014003.1|WP_062433311.1|1134_2235_+|IS4-family-transposase	unknown	unknown	gnl|CDD|376573
NZ_CP014003.1|WP_062436954.1|13976_19034_+|ExeM/NucH-family-extracellular-endonuclease	unknown	unknown	gnl|CDD|225249
NZ_CP014003.1|WP_062436953.1|9391_9637_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP014003.1|WP_030008171.1|2576_2897_-|nucleotidyltransferase-family-protein	unknown	unknown	gnl|CDD|224583
NZ_CP014003.1|WP_030008172.1|3170_3485_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP014003.1|WP_062437150.1|11892_12465_-|K(+)-transporting-ATPase-subunit-C	gnl|CDD|184447	PRK14003, PRK14003, K(+)-transporting ATPase subunit C.	9.65825e-116
NZ_CP014003.1|WP_062436956.1|19611_20346_+|peptidylprolyl-isomerase	gnl|CDD|223831	COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones].	1.39038e-07
NZ_CP014003.1|WP_062433311.1|1134_2235_+|IS4-family-transposase	gnl|CDD|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	0.000739321
NZ_CP014003.1|WP_030008170.1|2242_2584_-|DUF86-domain-containing-protein	gnl|CDD|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	2.04529e-36
NZ_CP014003.1|WP_012305531.1|10724_11831_-|sensor-histidine-kinase-KdpD	gnl|CDD|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	2.78377e-174
NZ_CP014003.1|WP_030008171.1|2576_2897_-|nucleotidyltransferase-family-protein	gnl|CDD|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	2.88675e-23
NZ_CP014003.1|WP_062436954.1|13976_19034_+|ExeM/NucH-family-extracellular-endonuclease	gnl|CDD|225249	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only].	9.52478e-135

Protein sequences

>NZ_CP014003.1|WP_062433311.1|1134_2235_+|IS4-family-transposase
MSQISEIRDQLRPHIGWHGARLSFVAMFLIALFRAKTVNLAELATVWGGDATEESNYKRMQRFFKSFEVNLDKIAQMVMNIAAIPQPWVLSIDRTNWSFGTTDFNILMLGVVHEGIGYPLMWTMLEKKKGNSNSTERMDLFERFEILFPDAEIAYLTGDREFIGKPWLSYLMLDKPIPFRLRIRQTDKISKGKGQPAIAGAHLFRSLAMGETRILPGKRWVWGRLVYVIATRLDSKQKSKQTDDDFLIIITAHEPQNALTDYRRRWGIETLFGALKTRGFCLESTHFIDKRRLSKLLALLAIAFVWAMKAGLWRHSQRPIRIIKAHGRRARSLFRYGFDLLRRFFTVSTQPLLGSGFHPIQFLSCT
>NZ_CP014003.1|WP_030008170.1|2242_2584_-|DUF86-domain-containing-protein
MSRSLKLYLNDILTSIDKIQEYSEGLEKEAFLKHSLIFDAVTLNLQIIGEASKKIPEQIRNQYPHIPWRNIIGLRNIIAHTYFYLDEDILWHTIQHELEPLQKCIQELWDKEA
>NZ_CP014003.1|WP_030008171.1|2576_2897_-|nucleotidyltransferase-family-protein
MTQQQTACSSVITSEQVLETLRNYPNLFEKFSIKTLALFGSTAHNQATATSDLDFVVEFQNETTLSLYMDLKFFLEELFNKPVDLATKKSLKEIIREQVLNEAKYV
>NZ_CP014003.1|WP_030008172.1|3170_3485_-|hypothetical-protein
MLDIINTTLRQNLTSSSPLSTTKNNPGDQVNDQADQVSDQVKQLLAIMDDQFWSTNALMESFSLTRKPTFRKNYLYPAIQAGLVVMKYPDNPRHPQQKYKKVDG
>NZ_CP014003.1|WP_012305522.1|8148_8658_-|hypothetical-protein
MKYYNFELSFRLPGVNTNPEQYLDALFEAGCDDAMIGMGRNGFIGADFSRESESLELAVESAIKDIESAIPGAVLIEAGPDLVGASDIAAILGCSRQNIRQHLTMADENGPIPVYQGKRDLWHLAEVLIWLRDAKGLKIEPELIEVAAYVMTFNSNCQSKKTKKVAALA
>NZ_CP014003.1|WP_062436953.1|9391_9637_-|hypothetical-protein
MSGKFGDIIGRAKQTSKPDNQISDQQNNQQSAQSTETEKMVNLCAKVPKSLRQHWAAEAKRNGITMTEVIIDALNQKFGKP
>NZ_CP014003.1|WP_012305531.1|10724_11831_-|sensor-histidine-kinase-KdpD
MYNPTAIAATNYQILPRRGKHKIFIGMAPGVGKTYRMLEEGHALKQDGVDVAIGLLEAHGREETTLKAEGLELIPRKQVYCRNVLLQEMDTEEILRRSPQLVLIDELAHTNIPGSKQEKRYQDVEKILNAGIDVYSTVNIQHLESLNDLVYRISGVVVRERIPDRIIDDADEIVVVDVTPETLQERLQEGKIYAPEKIDQALQNFFRRSNLIALRELALREIADNIEEESISETKNLHYNIRERVLVCISTYPNSIQLLRRGARIANHMNGQLFVLFVAPAGKFLSKSEALHIETCKRLCQEFTGEFLRIESPNIVTTIVKIATQERITQIVLGETRRSRFQLLFKGSIVQQLMRALPQVDIHIIANN
>NZ_CP014003.1|WP_062437150.1|11892_12465_-|K(+)-transporting-ATPase-subunit-C
MIQEIATSIRTTVFLWLLTALIYPLLIFMIGQGLFPIQANGSLIVNNQGQVIGSSLIGQAFNSEDYFWGRPSAVNYSIGEDAAPTGLSGATNLAPSNPDLLALVKERAEILRAADLEPTADLLYSSGSGLDPHISPTSAIAQIDRIAAARNLSPDDLKILIEQNTEGRFLGIFGEPAVNTVTLNLALDQL
>NZ_CP014003.1|WP_062436954.1|13976_19034_+|ExeM/NucH-family-extracellular-endonuclease
MTATILSAGDIAIIGFNFDNPDEFAFVPLIDLGAGTEINFTDNGWQAAGTFRSNEGTFTWTALTDVDAGTIINPVVSGISFSASGDQIIAYQGDASSPTFIYALNSEGNPGVWQSDSTNSNTSALPTGLVNGETAVALDEIDNAIYTGITTGTKAELLAAISNKSNWSGNDSTRQILPANAFSVSSISDDDPSPLTLISTIQGNGDVSPLEGELVTIEAVVVGDFQDGDAGTNGDFNGFFVQEEDADADGDAATSEGLFIFDGNSPIVDVNVGDIVRVTGTVNEFFGETQLSGVTVEVINDSDNSNQVTPATLTFPVAETVTNSDGALIADLEAYEGMLVTIPQELTVSDLFTLGRFGDIGLYADGRLETYTQTNMPSVDGFQAYQDLGVRNTVILDDGSTAQNPAMIPFEIPSEPGDAAGQLDANDDLNVGDTVTGLTGVVRFSRGSGGSGDEIYRINPVDTVEFVNTNPRPTEAPDVGGSLKVASFNVLNFFTSLGDENLTSGPDGLDPRGADNQEEFDRQVAKLVSALAEIEADVFGLVELENEFGDVNGDGEFAIGFLADALNAVIPGANYQYVDPGTDYVGTDAIAVGFIYNANTVGIAEGTTVAVLSDSDLAGLGVDPGNPVFDGSGTSRNPIAVTFEELATGETFTAVNNHFKSKGSVSPFGNNAGTGDGTGNNNEARLQAAIAVNAWLDTDPTGSGDSDFLILGDLNAYGMEDPIQYLLDEGYVDTIEKFLPDGESIYSFGFPLDLETSPQVQAFGALDYALANESLASQVVDAAEWHINADEASAFDYNTNFKPQAQIDGLFGANPFRSSDHDPLIIGLDLSSEPEVFTLELLHAADQEAGAAAVQDIPNFSAVLNALRAQDLGNDGIVDNTLTLSSGDAFIPGLFFDASAAAFGSGGIADIQIQNELGFQAIALGNHEFDFGTETLASLIDGSAPGRILGEDFTGANFPYLSANLDFSTDANLAPLAVAGGQAPQANVVTSSTVIDVNGEDIGVVGATTPTLDKISNSGDVGIFPSDFDLNPTPAQLDALAAEIQAEVDALLAANPDMNKVVLLSHMQQLNIERALAERLVNVDIIVGGGSNTRLFDENDRPRAGDSNQGDYPEFIDNAGGTKTALVNTDGSYKYVGRLVIDFDADGNIIPESYDPTVSGAYATDAQGVADLNAENLVDPEIQEIVNAIEAQILATESNVFGISDVFLNGNRSGLDTPEETDGVRTQETNLGNLTADANLAIAKEFDSEVVVSIKNGGGIRASIGQVVVPAGGTEAVRLPNEAVVDSDGNVVKPEGGISQNDIQAALAFNNGLTLLTLTKAELVAVLEHGVSLIPGVAGQFPQISGVKFSYDPDLAEGDRIISAGIFDENDDLIAELVRDGEIVGDANQTFRIVTLNFLASGGDGYPFPTGDSVNRVDLTDLDGDGQDDNQLTGDATFAADGTEQDALAEYLLDNFSTPETAFAQEDVGRTLDERIQNLNFRDDSVLGESTNGQVIFRAINLISSIFQRVLGPFGNNVNLGNILFSDEEGFEDSFDIFNTNLRQRILGNRNNTTSLNNLDNQMWGRNSSDDVMNALGGDDSGYGRSDDDILRGDRGNGILNGGIGDDILTGGKGLGTFVLNSGAGVNIITDFELGIDRIVLGNLSVNEVQLADTSTNTMMSASPSDLLGIFTGAQLSGFESEVFA
>NZ_CP014003.1|WP_062436956.1|19611_20346_+|peptidylprolyl-isomerase
MRIRIREQNLEQDDLIRLLVQYQLLPQLAREIILDQEITSLEEIEYNPEDIQIAIQQFVNKLQLKSESQLQIWLQNNGLQPEQLSAIATRPLKIEKLKQVRWGNNIEAYFMERKDQLDRMIYSLIRTQDAGIAQELYFRILDDATAFAPLAGQYSQGAEAQTGGLVGPVEMSTPHPQITAVLKNAQPGALKAPMKIGEWYVVLRLEEFLPAQLDELMRQRLINEQFEKWLRESVKNQLTIQYLE

Crispr_ID: NZ_CP014003_2

• CRISPR_ID: NZ_CP014003_2
• CRISPR_location: 162690-163676
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 13 spacers
• Cas_protein_info: cas2,cas1,cas4,cas6,cas3,cas5,cas7,cas8b5,WYL

Consensus repeat of NZ_CP014003_2

Consensus_repeat	Method
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	PILER-CR
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CRISPRCasFinder
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CRT

spacers of NZ_CP014003_2

>2.1|162727|37|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
GAAATTTATATGTCAGTCAAGGGGAAAAGCAAACCTT
>2.2|162801|36|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
CATAGCTGAGGTTTGGCTCTCGTTGCCCTGATTCAG
>2.3|162874|37|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
GCTCTAACTGATCCATTGATCCAAAAAAACGAAAAAT
>2.4|162948|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
CTGTGGTGCGCAACTAGCCTTAGATGATCGTTCGG
>2.5|163020|33|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
AGCAGCAACGATGCCTACATCCGTCCCACCCGT
>2.6|163090|36|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
TCAGCCCAACGGGGGCCGGGTGGGGGACAGCGATTA
>2.7|163163|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
GCATCAAGCATTAGGAGAACTGAATTATAATCCTG
>2.8|163235|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
ATAACGAAGGCGATGATCCTGACGAGGGTGGTCAA
>2.9|163307|36|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
TACTAATGCGCTTTTAACTAATCCTGCTTTGGCTGC
>2.10|163380|38|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
TGTTGCGGTCGGCCATGTTGACTTTATCGACCAAACCA
>2.11|163455|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT
AATCCGAATAGAAGTAGGTTCTTCATTCTCTTCAG
>2.12|163527|34|NZ_CP014003|CRISPRCasFinder,CRT
CCATATAATTAACGCAAGAAGTCAGAAGCACTAA
>2.13|163598|42|NZ_CP014003|CRISPRCasFinder,CRT
ATGATTGCTTCGGCCATATCCGCGCCCCAACTTTGGACTAAG

CRISPR arrays and Neighbor proteins around NZ_CP014003_2

CRISPR arrays

The CRISPR arrays of NZ_CP014003_2

>merge|NZ_CP014003|2|162690-163676|PILER-CR,CRISPRCasFinder,CRT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAACGAAATTTATATGTCAGTCAAGGGGAAAAGCAAACCTTCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCATAGCTGAGGTTTGGCTCTCGTTGCCCTGATTCAGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACGCTCTAACTGATCCATTGATCCAAAAAAACGAAAAATCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCTGTGGTGCGCAACTAGCCTTAGATGATCGTTCGGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACAGCAGCAACGATGCCTACATCCGTCCCACCCGTCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACTCAGCCCAACGGGGGCCGGGTGGGGGACAGCGATTACTTTCCAACCACTAAATCCCGACCACGGGACTGAAACGCATCAAGCATTAGGAGAACTGAATTATAATCCTGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACATAACGAAGGCGATGATCCTGACGAGGGTGGTCAACTTTCCAACCACTAAATCCCGACCACGGGACTGAAACTACTAATGCGCTTTTAACTAATCCTGCTTTGGCTGCCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACTGTTGCGGTCGGCCATGTTGACTTTATCGACCAAACCACTTTCCAACCACTAAATCCCGACCACGGGACTGAAACAATCCGAATAGAAGTAGGTTCTTCATTCTCTTCAGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAACCCATATAATTAACGCAAGAAGTCAGAAGCACTAACTTTCCAACCACTAAATCCCGACCACGGGACTGAAACATGATTGCTTCGGCCATATCCGCGCCCCAACTTTGGACTAAGCTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

>NZ_CP014003|2|2|162690-163526|PILER-CR
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	GAAATTTATATGTCAGTCAAGGGGAAAAGCAAACCTT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CATAGCTGAGGTTTGGCTCTCGTTGCCCTGATTCAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	GCTCTAACTGATCCATTGATCCAAAAAAACGAAAAAT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTGTGGTGCGCAACTAGCCTTAGATGATCGTTCGG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AGCAGCAACGATGCCTACATCCGTCCCACCCGT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TCAGCCCAACGGGGGCCGGGTGGGGGACAGCGATTA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	GCATCAAGCATTAGGAGAACTGAATTATAATCCTG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	ATAACGAAGGCGATGATCCTGACGAGGGTGGTCAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TACTAATGCGCTTTTAACTAATCCTGCTTTGGCTGC
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGTTGCGGTCGGCCATGTTGACTTTATCGACCAAACCA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AATCCGAATAGAAGTAGGTTCTTCATTCTCTTCAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

>NZ_CP014003|2|2|162690-163676|CRISPRCasFinder
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	GAAATTTATATGTCAGTCAAGGGGAAAAGCAAACCTT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CATAGCTGAGGTTTGGCTCTCGTTGCCCTGATTCAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	GCTCTAACTGATCCATTGATCCAAAAAAACGAAAAAT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTGTGGTGCGCAACTAGCCTTAGATGATCGTTCGG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AGCAGCAACGATGCCTACATCCGTCCCACCCGT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TCAGCCCAACGGGGGCCGGGTGGGGGACAGCGATTA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	GCATCAAGCATTAGGAGAACTGAATTATAATCCTG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	ATAACGAAGGCGATGATCCTGACGAGGGTGGTCAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TACTAATGCGCTTTTAACTAATCCTGCTTTGGCTGC
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGTTGCGGTCGGCCATGTTGACTTTATCGACCAAACCA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AATCCGAATAGAAGTAGGTTCTTCATTCTCTTCAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CCATATAATTAACGCAAGAAGTCAGAAGCACTAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	ATGATTGCTTCGGCCATATCCGCGCCCCAACTTTGGACTAAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

>NZ_CP014003|2|2|162690-163676|CRT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	GAAATTTATATGTCAGTCAAGGGGAAAAGCAAACCTT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CATAGCTGAGGTTTGGCTCTCGTTGCCCTGATTCAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	GCTCTAACTGATCCATTGATCCAAAAAAACGAAAAAT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CTGTGGTGCGCAACTAGCCTTAGATGATCGTTCGG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AGCAGCAACGATGCCTACATCCGTCCCACCCGT
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TCAGCCCAACGGGGGCCGGGTGGGGGACAGCGATTA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	GCATCAAGCATTAGGAGAACTGAATTATAATCCTG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	ATAACGAAGGCGATGATCCTGACGAGGGTGGTCAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TACTAATGCGCTTTTAACTAATCCTGCTTTGGCTGC
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	TGTTGCGGTCGGCCATGTTGACTTTATCGACCAAACCA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	AATCCGAATAGAAGTAGGTTCTTCATTCTCTTCAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	CCATATAATTAACGCAAGAAGTCAGAAGCACTAA
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC	ATGATTGCTTCGGCCATATCCGCGCCCCAACTTTGGACTAAG
CTTTCCAACCACTAAATCCCGACCACGGGACTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014003.1|WP_083500766.1|151714_151921_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP014003.1|WP_062437137.1|155357_156242_+|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	unknown
NZ_CP014003.1|WP_062437146.1|160629_161208_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl|CDD|273040
NZ_CP014003.1|WP_062437144.1|159783_160620_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl|CDD|227838
NZ_CP014003.1|WP_062437148.1|161210_162188_+|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|274976
NZ_CP014003.1|WP_062437135.1|152874_155355_+|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	unknown
NZ_CP014003.1|WP_062437139.1|156245_157070_+|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	unknown
NZ_CP014003.1|WP_062437141.1|157056_159765_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl|CDD|187770
NZ_CP014003.1|WP_062437133.1|151883_152747_-|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl|CDD|225253
NZ_CP014003.1|WP_030008328.1|162184_162478_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP014003.1|WP_062437137.1|155357_156242_+|hypothetical-protein	cas7	cls000038_cas7_CAS-I-B	9.8e-139	456.3	0.0
NZ_CP014003.1|WP_062437146.1|160629_161208_+|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	1.6e-35	117.6	0.0
NZ_CP014003.1|WP_062437144.1|159783_160620_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	2e-45	150.0	0.0
NZ_CP014003.1|WP_062437148.1|161210_162188_+|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	1.2e-105	347.8	0.0
NZ_CP014003.1|WP_062437135.1|152874_155355_+|hypothetical-protein	cas8b5	mkCas0131_cas8b5_CAS-I-B	0	1096.1	29.3
NZ_CP014003.1|WP_062437139.1|156245_157070_+|hypothetical-protein	cas5	cls000047_cas5_CAS-I-B	1.4e-110	363.5	0.0
NZ_CP014003.1|WP_062437141.1|157056_159765_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	3.6e-54	178.9	0.5
NZ_CP014003.1|WP_062437133.1|151883_152747_-|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	3.8e-14	47.8	0.2
NZ_CP014003.1|WP_030008328.1|162184_162478_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.1e-23	78.0	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP014003.1|WP_062437146.1|160629_161208_+|CRISPR-associated-protein-Cas4	gnl|CDD|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	4.91861e-34
NZ_CP014003.1|WP_062437144.1|159783_160620_+|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.92069e-32
NZ_CP014003.1|WP_062437148.1|161210_162188_+|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	0
NZ_CP014003.1|WP_062437133.1|151883_152747_-|WYL-domain-containing-protein	gnl|CDD|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	9.80239e-08
NZ_CP014003.1|WP_062437141.1|157056_159765_+|CRISPR-associated-helicase-Cas3'	gnl|CDD|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	7.80735e-43
NZ_CP014003.1|WP_030008328.1|162184_162478_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.60074e-25

Protein sequences

>NZ_CP014003.1|WP_030008328.1|162184_162478_+|CRISPR-associated-endonuclease-Cas2
MNTLFYLIIYDLPSTKAGDKRRKRLFDLLSGYGTWKQFSVFECFLTTKQFAKLQTAIEKLIKPDEDAVCIYILDATAVKKAIAYGTSTPEKPGSIIL
>NZ_CP014003.1|WP_062437148.1|161210_162188_+|type-I-D-CRISPR-associated-endonuclease-Cas1
MSTLYLTQPDAILSKQQEAFKIALKSEDGTWKKQSIPAQTLEDIVLLGYPSMTGEAFGYALELGLPVHYLSRFGKYVGSALPNESRNGQLRLAQFRAHENPQQRLDIVKAIAKGKIHNQYNLLYRRGQKENPLKGREKLVLQKQSLDEVRGVEGLAAREYFACWQDILGDSWEFTGRFRRPPTDPVNALLSFGYGLLRTQVTAAAHIAGLDPYIGFLHETTRGQPALVLDLMEEFRPLIADSVVLTVLKQKEIKPKDFNESLGAYRLKDDACKVFLSAFDRKLCSEFKHPIFNYKCSYRRAIELQARLLARHLQEGIPYEPLIIR
>NZ_CP014003.1|WP_062437146.1|160629_161208_+|CRISPR-associated-protein-Cas4
MDDYLPLAYLNAWEYCPRRFYFEYVLGEMEINDHIIRGNHLHRNINEAGTSIEGDTRIHRQQWVWSDRLKIKGIIDAVEETDGLLIPLEYKKGKMGKHLNDHFQLCAAALCLEERTKQEIPYGEIFYYGNRRRQQVEFTQTLRNLTEQAIMAAHLASNRPMPLPITNQKKCTDCSLKRLCLPKEIKKLVKSH
>NZ_CP014003.1|WP_062437144.1|159783_160620_+|CRISPR-associated-endoribonuclease-Cas6
MPYSLVINFVPRSPLLKTHLNGRNLHALFLDLVSSVDKDLGTQLHQQQSEKAFTLSPVQIKLNCKLMQWSYHRAIAAGTPCWWRITLLDDSLFGKLAHLWLNINRTEPWQLGSAQLDIVSILSNPQSQQPWANFISYTRLYEQALDGTDSQTSQQARKINFRFCTPTAFRKTQYDVSLPDRDLIFRSLLKRWNQYSEIHFEFTETIFEPIYPSFFDIRTEIISDKRSKFIGCVGEMSFSVLGDVNAQIIKQINTLADFSFYAGIGRKTPMGMGQVSRY
>NZ_CP014003.1|WP_062437141.1|157056_159765_+|CRISPR-associated-helicase-Cas3'
MIQAKKRQFIFGRVFFPDGKNKIPKNLLFQPLGNHVANVTKLVSLWNWQSPEFVNIADLDAAKKRTLRAAKIHDMGKPQKFKFKVEVKNNKPKLIYSFSGHRFLAEDKHEPWAEYLAKGHHDFSIHDIARDSYKLKTLAQSNNLLGKASQYREILEADPLAYARELYILEMCDQIEAEIACRFYDDDEQAESRAFMDFNIVQDPQNNYKFSLEPWVFGDDVSEISLPLTTWSMPFPKDLKQEMESYQGDRLKDKETDWAKRLNKAVKDWWNNNCDINSTRNNKHIIILKRLVNEKLGAIDCNTLYLKIPEDKSFTPNEMQQAVMDNIIGEDKYPALLLKAPTGSGKTEAILFPALANRNRLFLVLPTRSLIEDQSERIDKYLTRFSALEENQDRQFSLVIDTGSVMTRKLYGNGENFKPKNNPRRHLYKGDVILTTLDKFIYRYFAFGDKQKSFIFPHRIQQQKTLICFDEAHSYENIAFTNFQSLVKSLYEQGRSLVLMTATMPEKLIKTFDYLEPLDFSDFVEPKLRSFDYLDKISIGEEQEDGSFDSSNFQEQVTAIALEEIKAKPQRRILLIVETVKDAVGVYLKLKEKLNPDNLFLYHGRIADQLRPDIYQQIKQRDDNGQPYILVTTRAIEVGCDLNAETLITQICPPENLIQRVGRCNRRGNVQDAKVIVVGDRIPDFLNTLDTEAWNNYRSVLSQLNEFDAEAVGDCIFSQQQVDDYRVLETFSMLHDYVYGSDLTCQGTHEKGVIPTRSWQPSVTLQFIGKDHSSEVDITDEKPHSITVPIERLCGGSEYAHVNVQEQFYDKDQTKWSKRSLRWGSAYNKNILVTIRNEDQIGLCFAHALENYQYDSELGFVDLPKVFIKIASKGTEEKLLHICEKNGEKHKSIISYIKENIN
>NZ_CP014003.1|WP_062437139.1|156245_157070_+|hypothetical-protein
MYCLQLTIKPTAAMTFRMIPGSILNIATYPFVPPTSLSGFLRRLTMMKAGLDIPETKVNKEKPPTYLLPPDYITLGAYPDLSEWTGIHRTYRKGMQEFNHDDFSKLVIKGKGKNFQLHTWEYFFTEQLSGFVISQSAKKLEALRAVEGFGCYIGKEGYAYVEKASEVIEMIEEECAATPSTVVPADDLIQNSQWYGGCDIYNLYHYRWQKEAYAQLEETGVWGEEPTAVDGFIPFTGAYYSDSANHPILNYWTDQENIFIPSSLVSLLSRNDPS
>NZ_CP014003.1|WP_062437137.1|155357_156242_+|hypothetical-protein
MATGLPQINNNTRLHFDIYAILEGSQELYLGHEVQVNVNMVEVVKLSTRDGQSLEKCYISPTKRRGVERRCLIWAPHKDGTLLGDKLKCGIPATCAEIECPICSVFGGLEAGKKTLIGRVSHGGGVAIQNIDPEEKQRAMHPSRMASPKSGKDETPIPFKRQYNQPGILYPVSNHGLSITDQDFAAVAYAFLDALPRIGSGNPKGVAIAENPDTHQPLLVVDRYLVPRGKRPVISPSVTDPEIAVNDFIRLSQIPEHESENHVELNHFERWIGDTALAKLQDYSSTFVDNVLQK
>NZ_CP014003.1|WP_062437135.1|152874_155355_+|hypothetical-protein
MFISSQRLRALKILVSAVSCSQLLERSAKNSLIISLKSNSEIKVIAESIAKNFSNSQLIRQLNISPSNNNVDFLWNLHIKANKIYFQNQEIGSLKILFKSTLPGELQARLSTESIIERYLEYLQKVYKIAVLNESDRHVELFIPNQSIPDFTELWKKFLQEVAFSEYGLPRYELSGLMQTFVAMLKSITLSGRGFSALEIPVINQSQANMLAAWYFAVWRDAKQRQSDRQNKIDILYKELETQELSEKDQKSKTKEIADKEAMQAKEAAKYQELFSKSFQKMLEEQKNLNQDLKSIESQLQQDNLAKKDRNKLVKQKEKVIEKLIFSEDFVNQKQLLLEESGGVPFIFIKEDLKKSPESFRQIKAIAKGFTKTATDQINGTRGDIFAKCLIEMYRLLELKEDQFDQLPAPVLTEEIVTPRSRSPGDDHKEFCYSCGIDLDPKTAKWQVLRFMFERPSQRRQSASGEGRPHICDSCALLAFASPLKVTDESIILKLEAADNQISTQLKLKDYLRMLTCKEMNLNAGKYIVLTSDKTSKGDAASSKLGQVQYAIAKVASLFSVEVLQDFKFSLITQASEPIILSNRHLIFVKGIMAGYGQSIIESGKEINLKLGDAIRHIQKDMPYLAEYSITKNVTYSDCFELEKVRQLYWQTIQHDLGNNMTSNKRLAKRARLYKDVAALTGLTAAFVGSMESSLKSKEKEEDYRREMSKLIEKVDDPNFFGYYATLGVETIVQARLWKNPDNYFIYQQTQELLQTLGQSNREQEKEGKTWLQLYIDDVTNAYAHFADSDNYSQEKDWKELTYQLKLSLYTRFPELVRKSKNSGDN
>NZ_CP014003.1|WP_062437133.1|151883_152747_-|WYL-domain-containing-protein
MSRRGQSVTLSLRELEKAQLEELALEFGCEWGDRPNISKLIKQIAKRELKIAPNNDWQLERINVLEKIRIFLVDQGRMAEAIALAQILSERGELKDIALKREIEKFLQQPLPTWRQRIDSFIRCQQPFQLSYQDAQERIWSFSIHHAQIVTHEKRQYLDCWATETEGNLDLPELQHNWSLRLDRIQDAAVSPLNEKWRSHLDSISVELHLYRGLAFAYQGKSADVHNDWHPELPKTRQVIRQVTSTFWFFREILPYGKDCKIIAPQSISDLFKQDLEALYQMYNPKH
>NZ_CP014003.1|WP_083500766.1|151714_151921_-|hypothetical-protein
MRHSIKCITQNIDILSDKVAQTREFYPEHFVGELMFQNDNTDECEVYPFLTEAIARLEQKVAYYRDEA

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014003_1	1.1|75|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	75-109	35	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	75-109	0	1.0
NZ_CP014003_1	1.2|147|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	147-181	35	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	147-181	0	1.0
NZ_CP014003_1	1.3|219|39|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	219-257	39	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	219-257	0	1.0
NZ_CP014003_1	1.4|295|38|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	295-332	38	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	295-332	0	1.0
NZ_CP014003_1	1.5|370|33|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	370-402	33	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	370-402	0	1.0
NZ_CP014003_1	1.6|440|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	440-474	35	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	440-474	0	1.0
NZ_CP014003_1	1.7|512|34|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	512-545	34	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	512-545	0	1.0
NZ_CP014003_1	1.8|583|36|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	583-618	36	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	583-618	0	1.0
NZ_CP014003_1	1.9|656|34|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	656-689	34	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	656-689	0	1.0
NZ_CP014003_1	1.10|727|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	727-761	35	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	727-761	0	1.0
NZ_CP014003_2	2.1|162727|37|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	162727-162763	37	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	162727-162763	0	1.0
NZ_CP014003_2	2.2|162801|36|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	162801-162836	36	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	162801-162836	0	1.0
NZ_CP014003_2	2.3|162874|37|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	162874-162910	37	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	162874-162910	0	1.0
NZ_CP014003_2	2.4|162948|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	162948-162982	35	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	162948-162982	0	1.0
NZ_CP014003_2	2.5|163020|33|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	163020-163052	33	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	163020-163052	0	1.0
NZ_CP014003_2	2.6|163090|36|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	163090-163125	36	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	163090-163125	0	1.0
NZ_CP014003_2	2.7|163163|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	163163-163197	35	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	163163-163197	0	1.0
NZ_CP014003_2	2.8|163235|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	163235-163269	35	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	163235-163269	0	1.0
NZ_CP014003_2	2.9|163307|36|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	163307-163342	36	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	163307-163342	0	1.0
NZ_CP014003_2	2.10|163380|38|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	163380-163417	38	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	163380-163417	0	1.0
NZ_CP014003_2	2.11|163455|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	163455-163489	35	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	163455-163489	0	1.0
NZ_CP014003_2	2.12|163527|34|NZ_CP014003|CRISPRCasFinder,CRT	163527-163560	34	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	163527-163560	0	1.0
NZ_CP014003_2	2.13|163598|42|NZ_CP014003|CRISPRCasFinder,CRT	163598-163639	42	NZ_CP014003	Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence	163598-163639	0	1.0
NZ_CP014003_1	1.9|656|34|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	656-689	34	NZ_KY126370	Enterobacter cloacae subsp. cloacae strain MN201516 plasmid pOP-I, complete sequence	12469-12502	9	0.735
NZ_CP014003_1	1.9|656|34|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT	656-689	34	NZ_CP023526	Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence	61649-61682	10	0.706

1. spacer 1.1|75|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ccaagctttctatcaggcttctgattgacccaacg	CRISPR spacer
ccaagctttctatcaggcttctgattgacccaacg	Protospacer
***********************************

2. spacer 1.2|147|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ttatggcgagtcatccggggacaagagtgcggttt	CRISPR spacer
ttatggcgagtcatccggggacaagagtgcggttt	Protospacer
***********************************

3. spacer 1.3|219|39|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

acggcggggggggcgcgagcacagaagttattgctgtgg	CRISPR spacer
acggcggggggggcgcgagcacagaagttattgctgtgg	Protospacer
***************************************

4. spacer 1.4|295|38|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cacaatgcgatgcgattgagttttgacgcggggcaatt	CRISPR spacer
cacaatgcgatgcgattgagttttgacgcggggcaatt	Protospacer
**************************************

5. spacer 1.5|370|33|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ttacgaaaagtgccacccggccaaagagaaaaa	CRISPR spacer
ttacgaaaagtgccacccggccaaagagaaaaa	Protospacer
*********************************

6. spacer 1.6|440|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

aagcaagtggtgaagcagaaacccgctctgtgact	CRISPR spacer
aagcaagtggtgaagcagaaacccgctctgtgact	Protospacer
***********************************

7. spacer 1.7|512|34|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

atcggccaattaccagggggaaactatctgtctt	CRISPR spacer
atcggccaattaccagggggaaactatctgtctt	Protospacer
**********************************

8. spacer 1.8|583|36|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

taactccatattccctggttttgtgtgttgacttgg	CRISPR spacer
taactccatattccctggttttgtgtgttgacttgg	Protospacer
************************************

9. spacer 1.9|656|34|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tcatttgcgccattgtttttcctcaattagaaag	CRISPR spacer
tcatttgcgccattgtttttcctcaattagaaag	Protospacer
**********************************

10. spacer 1.10|727|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cagtacgaggcagtggggggaaccagtgatttaga	CRISPR spacer
cagtacgaggcagtggggggaaccagtgatttaga	Protospacer
***********************************

11. spacer 2.1|162727|37|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gaaatttatatgtcagtcaaggggaaaagcaaacctt	CRISPR spacer
gaaatttatatgtcagtcaaggggaaaagcaaacctt	Protospacer
*************************************

12. spacer 2.2|162801|36|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

catagctgaggtttggctctcgttgccctgattcag	CRISPR spacer
catagctgaggtttggctctcgttgccctgattcag	Protospacer
************************************

13. spacer 2.3|162874|37|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gctctaactgatccattgatccaaaaaaacgaaaaat	CRISPR spacer
gctctaactgatccattgatccaaaaaaacgaaaaat	Protospacer
*************************************

14. spacer 2.4|162948|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ctgtggtgcgcaactagccttagatgatcgttcgg	CRISPR spacer
ctgtggtgcgcaactagccttagatgatcgttcgg	Protospacer
***********************************

15. spacer 2.5|163020|33|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

agcagcaacgatgcctacatccgtcccacccgt	CRISPR spacer
agcagcaacgatgcctacatccgtcccacccgt	Protospacer
*********************************

16. spacer 2.6|163090|36|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tcagcccaacgggggccgggtgggggacagcgatta	CRISPR spacer
tcagcccaacgggggccgggtgggggacagcgatta	Protospacer
************************************

17. spacer 2.7|163163|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gcatcaagcattaggagaactgaattataatcctg	CRISPR spacer
gcatcaagcattaggagaactgaattataatcctg	Protospacer
***********************************

18. spacer 2.8|163235|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ataacgaaggcgatgatcctgacgagggtggtcaa	CRISPR spacer
ataacgaaggcgatgatcctgacgagggtggtcaa	Protospacer
***********************************

19. spacer 2.9|163307|36|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tactaatgcgcttttaactaatcctgctttggctgc	CRISPR spacer
tactaatgcgcttttaactaatcctgctttggctgc	Protospacer
************************************

20. spacer 2.10|163380|38|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tgttgcggtcggccatgttgactttatcgaccaaacca	CRISPR spacer
tgttgcggtcggccatgttgactttatcgaccaaacca	Protospacer
**************************************

21. spacer 2.11|163455|35|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

aatccgaatagaagtaggttcttcattctcttcag	CRISPR spacer
aatccgaatagaagtaggttcttcattctcttcag	Protospacer
***********************************

22. spacer 2.12|163527|34|NZ_CP014003|CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ccatataattaacgcaagaagtcagaagcactaa	CRISPR spacer
ccatataattaacgcaagaagtcagaagcactaa	Protospacer
**********************************

23. spacer 2.13|163598|42|NZ_CP014003|CRISPRCasFinder,CRT matches to NZ_CP014003 (Synechococcus sp. PCC 73109 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

atgattgcttcggccatatccgcgccccaactttggactaag	CRISPR spacer
atgattgcttcggccatatccgcgccccaactttggactaag	Protospacer
******************************************

24. spacer 1.9|656|34|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY126370 (Enterobacter cloacae subsp. cloacae strain MN201516 plasmid pOP-I, complete sequence) position: , mismatch: 9, identity: 0.735

tcatttgcgccattgtttttcctcaattagaaag	CRISPR spacer
tattgtattgcatggtttttcctcaattaaaaag	Protospacer
*  * *..  *** ***************.****

25. spacer 1.9|656|34|NZ_CP014003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023526 (Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

tcatttgcgccattgtttttcctcaattagaaag	CRISPR spacer
gtcctgccgccattgtctttcctcaatcagagaa	Protospacer
 . .*  *********.**********.***.*.