CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013990	Leclercia adecarboxylata strain USDA-ARS-USMARC-60222 chromosome, complete genome	7 crisprs	cas3,DinG,DEDDh,csa3,cas6f,cas7f,cas5f,cas8f,cas3f,WYL	0	12	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013990_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013990_1

123870-123967

Orphan

Consensus_repeat	Method
GCTTTAGGCTGCTGAACCGGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013990_1

>merge|NZ_CP013990|1|123870-123967|CRISPRCasFinder
GCTTTAGGCTGCTGAACCGGCTGAGTCTGCGCGGTACGCGGCTGCTGATACGGCTGCTCCGTTACGCGCGGCTGCGCTTTAGGCTGCTGTACCGGCTG

>NZ_CP013990|1|1|123870-123967|CRISPRCasFinder
GCTTTAGGCTGCTGAACCGGCTG	AGTCTGCGCGGTACGCGGCTGCTGATACGGCTGCTCCGTTACGCGCGGCTGC
GCTTTAGGCTGCTGTACCGGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013990.1\|WP_059306963.1\|137491_138595_-\|glycerol-dehydrogenase	unknown	unknown	gnl\|CDD\|181843
NZ_CP013990.1\|WP_032615282.1\|122876_123407_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NZ_CP013990.1\|WP_059306954.1\|114586_115597_-\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|224411
NZ_CP013990.1\|WP_059306961.1\|131151_133584_+\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II	unknown	unknown	gnl\|CDD\|236530
NZ_CP013990.1\|WP_032615286.1\|119968_120454_-\|ribonuclease-E-activity-regulator-RraA	unknown	unknown	gnl\|CDD\|236487
NZ_CP013990.1\|WP_059306962.1\|135215_137387_+\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NZ_CP013990.1\|WP_032615276.1\|129988_131149_+\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|169194
NZ_CP013990.1\|WP_059306955.1\|118872_119541_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013990.1\|WP_032615283.1\|121535_122867_-\|HslU--HslV-peptidase-ATPase-subunit	unknown	unknown	gnl\|CDD\|235364
NZ_CP013990.1\|WP_059306959.1\|125736_127932_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP013990.1\|WP_059306957.1\|120545_121466_-\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	unknown	unknown	gnl\|CDD\|129834
NZ_CP013990.1\|WP_032615278.1\|128134_128347_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234576
NZ_CP013990.1\|WP_032615293.1\|115761_117270_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_CP013990.1\|WP_059306958.1\|124576_125602_-\|DNA-binding-transcriptional-regulator-CytR	unknown	unknown	gnl\|CDD\|182923
NZ_CP013990.1\|WP_032615290.1\|118540_118780_+\|septal-ring-assembly-protein-ZapB	unknown	unknown	gnl\|CDD\|185320
NZ_CP013990.1\|WP_003862042.1\|129392_129710_-\|met-regulon-transcriptional-regulator-MetJ	unknown	unknown	gnl\|CDD\|179982
NZ_CP013990.1\|WP_059306956.1\|119537_119933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013990.1\|WP_059306960.1\|128667_129348_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368776
NZ_CP013990.1\|WP_032615268.1\|134181_135072_+\|methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|181852
NZ_CP013990.1\|WP_032615292.1\|117291_118137_-\|aquaporin	unknown	unknown	gnl\|CDD\|223653

Protein	Function_ID	Function_description	E-value
NZ_CP013990.1\|WP_059306963.1\|137491_138595_-\|glycerol-dehydrogenase	gnl\|CDD\|181843	PRK09423, gldA, glycerol dehydrogenase; Provisional.	0
NZ_CP013990.1\|WP_032615282.1\|122876_123407_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	6.91915e-130
NZ_CP013990.1\|WP_059306954.1\|114586_115597_-\|class-II-fructose-bisphosphatase	gnl\|CDD\|224411	COG1494, GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism].	0
NZ_CP013990.1\|WP_059306961.1\|131151_133584_+\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II	gnl\|CDD\|236530	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional.	0
NZ_CP013990.1\|WP_032615286.1\|119968_120454_-\|ribonuclease-E-activity-regulator-RraA	gnl\|CDD\|236487	PRK09372, PRK09372, ribonuclease E inhibitor RraA.	1.98045e-102
NZ_CP013990.1\|WP_059306962.1\|135215_137387_+\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NZ_CP013990.1\|WP_032615276.1\|129988_131149_+\|cystathionine-gamma-synthase	gnl\|CDD\|169194	PRK08045, PRK08045, cystathionine gamma-synthase; Provisional.	0
NZ_CP013990.1\|WP_032615292.1\|117291_118137_-\|aquaporin	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	2.10724e-80
NZ_CP013990.1\|WP_032615283.1\|121535_122867_-\|HslU--HslV-peptidase-ATPase-subunit	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NZ_CP013990.1\|WP_059306958.1\|124576_125602_-\|DNA-binding-transcriptional-regulator-CytR	gnl\|CDD\|182923	PRK11041, PRK11041, DNA-binding transcriptional regulator CytR; Provisional.	0
NZ_CP013990.1\|WP_059306957.1\|120545_121466_-\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	gnl\|CDD\|129834	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	1.9501e-142
NZ_CP013990.1\|WP_032615278.1\|128134_128347_+\|50S-ribosomal-protein-L31	gnl\|CDD\|234576	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed.	2.71621e-40
NZ_CP013990.1\|WP_032615293.1\|115761_117270_-\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP013990.1\|WP_059306959.1\|125736_127932_-\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP013990.1\|WP_032615290.1\|118540_118780_+\|septal-ring-assembly-protein-ZapB	gnl\|CDD\|185320	PRK15422, PRK15422, septal ring assembly protein ZapB; Provisional.	4.6016e-22
NZ_CP013990.1\|WP_003862042.1\|129392_129710_-\|met-regulon-transcriptional-regulator-MetJ	gnl\|CDD\|179982	PRK05264, PRK05264, met regulon transcriptional regulator MetJ.	3.8605e-82
NZ_CP013990.1\|WP_059306960.1\|128667_129348_+\|hypothetical-protein	gnl\|CDD\|368776	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM). This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria Erwinia chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric.	6.50864e-55
NZ_CP013990.1\|WP_032615268.1\|134181_135072_+\|methylenetetrahydrofolate-reductase	gnl\|CDD\|181852	PRK09432, metF, methylenetetrahydrofolate reductase.	0

>NZ_CP013990.1|WP_032615282.1|122876_123407_-|ATP-dependent-protease-subunit-HslV
MTTIVSVRRNGQVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADENASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENSDLGARDIAVKALDIAGDICIYTNHFHTIEELPSKA
>NZ_CP013990.1|WP_032615283.1|121535_122867_-|HslU--HslV-peptidase-ATPase-subunit
MSEMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEMLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAIKMVRVQSIEKNRYRAEEMAEERVLDVLIPPAKNNWGQAEQPAEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVEIMSPPGMEEMTSQLQSMFQNLGGQKQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQVAKPSDLIPELQGRLPIRVELQALTTEDFERILTEPNASVTVQYKALMATEGVNIEFTEDGIKRIAQAAWQVNETTENIGARRLHTVLERLMEDISYDASDLNGQSITIDADYVSKHLDALVADEDLSRFIL
>NZ_CP013990.1|WP_059306957.1|120545_121466_-|1,4-dihydroxy-2-naphthoate-polyprenyltransferase
MTEISRTRAWLESLRPKTLPLAFAAIIVGTALAWWQGYFDPLVAALALITAGLLQILSNLANDYGDAVKGSDKPDRIGPLRGMQKGVITQEQMKRALIITVVLICLSGIALVLVACKTPADAVGFLVLGLLAIVAAITYTVGTRPYGYIGLGDISVLVFFGWLSVMGSWYLQAHTLIPALFLPATACGMLATAVLNINNLRDIDSDRLNGKNTLAVRLGAVNARRYHACLLMGALLCLALFNLLSLHSLWGWLFVLATPLLVKQARYVMREQSASAMPPMLERTVKGALLTNLLFVVGIVLSQTLS
>NZ_CP013990.1|WP_032615286.1|119968_120454_-|ribonuclease-E-activity-regulator-RraA
MKYDTSELCDIYQEDVNVVEPLFSNFGGRSSFGGQIITVKCFEDNGLLYDLLEQNGRGRILLIDGGGSVRRALIDAELARLATQNEWEGIVVYGAVRQVDDLEELDIGIQAIAAIPVGAAGEGIGESDIRVNFGGVTFFSGDHLYADNTGIILSEDPLDIE
>NZ_CP013990.1|WP_059306956.1|119537_119933_+|hypothetical-protein
MKNSKLIVFTIFIVAMGVGYMSLAARVFVPVCYTQDDFFLYHMVTPEALKRTPRISSHWYFVGQTDEGSGLKWNEIVFTNINKNEVGTLVEQLDTWINDYPQRREIMSVSADESNGLPEIRVIHYERDRNK
>NZ_CP013990.1|WP_059306955.1|118872_119541_+|hypothetical-protein
MTKRSDIIDNSDRYITRNTPTGLIYTENLGWIDLGHANPTGAERLWQQMVMPRGGDDTWFDVNYDQSMSTNVFGIGITTGIYRRFLVRRGLSDRVLQGVALSIFIGTSHQFESLQDFWPYVVLTDSGYSAEDLVSNLFGFCQAVNYADYTSFLHICAKEKAYRIWDYYGPVGEYKNKSVLPLLFPDPLEKTCKLEPHLGRLPIFMSTITPVANPEYVRELSL
>NZ_CP013990.1|WP_032615290.1|118540_118780_+|septal-ring-assembly-protein-ZapB
MSLEVFEKLESKVQQAIDTITLLQMEIEELKEKNNALSQEIQTAQHGREELERENQHLREQQNGWQDRLHALLGRMEEV
>NZ_CP013990.1|WP_032615292.1|117291_118137_-|aquaporin
MSETSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVVPFIVAQFAGAFCAAALVYGLYYNLFIDFEQTHHMVRGSTESLELAGIFSTYPNPHINFVQAFAVEMVITAILMGVIMALGDDGNGIPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDLGPKTFAFFAGWGEVAFTGAKDIPYFLVPLFGPIVGASLGAFGYRKLIGRHLPCDTCVVEEKKSLSTTESKASL
>NZ_CP013990.1|WP_032615293.1|115761_117270_-|glycerol-kinase-GlpK
MTDKKYIVALDQGTTSSRAVVMDHDANIVSVSQREFEQIYPRPGWVEHDPMEIWASQSSTLVEVLAKADISSDEIAAIGITNQRETAIVWERETGKPIYNAIVWQCRRTADICEKLKRDGMEEYVRSATGLVVDPYFSGTKVKWILDHVEGSRERAKRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHELDWDEKMLDALDIPRAMLPQVRKSSEVYGQTNIGGKGGTRIPIAGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSEHGLLTTIACGPRGEVNYALEGAVFMAGASIQWLRDEMKLISDAFDSEYFATKVKDTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNSNHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYSGWKKAVKRALAWEEHDE
>NZ_CP013990.1|WP_059306954.1|114586_115597_-|class-II-fructose-bisphosphatase
MKRELAIEFSRVTEAAALAGYKWLGRGDKNTADGAAVHAMRIMLNQVNIDGTIVIGEGEIDEAPMLFIGEKVGTGNGDAVDIAVDPIEGTRMTAMGQANALAVLAVGDKGTFLNAPDMYMEKLIVGPGAKGIIDLNLPLADNLRNIAAALGKPLSELTVTILAKPRHDAVIAHMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSAAVIRALDGDMQGRLLARHEVKGDNEENRRIGEQELARCAAMGIKANTLLRLDDMARSDNVIFSATGITKGDLLDGISRKGNMATTETLLIRGKSRTIRRIQSIHYLDRKDPDVQTHIL
>NZ_CP013990.1|WP_059306958.1|124576_125602_-|DNA-binding-transcriptional-regulator-CytR
MKSRKEVASATMKDVALKAKVSTATVSRALMNPDKVSQSTRNRVEQAALEVGYLPHAMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAAAQGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELELPTVHIDNLTAAFNAVNYLQDLGHKRIGCIAGPEEMPLCHYRLQGYVQALRRTGATVDPHYIARGDFTYAAGGLALEQLLSLPQPPTAVFCHSDVMALGALSYAKRRGLNVPKDLSIIGFDNISLSEFCDPPLTTVAQPRYDIGREAMLLLLDQLNGQTVSSGSRLLDCELIVRGSTQALT
>NZ_CP013990.1|WP_059306959.1|125736_127932_-|primosomal-protein-N'
MPVAHVALPVPLPRTFDYLLPDSMQAKAGCRVTVPFGKQQRVGIVVSVSQQSELPLSELKSVVEVLDDEPVFSTSVWRLLLWAADYYHHPIGDVLFHALPILLRQGKSASHAPMWYWFATEQGQAVDINSLKRSPKQQQALAALRQGRIWRHQVESLDFNDAALQSLRKKGLSELACEAPALIDWRDGFSVPGDRLRLNTEQATAVGAIHSAADRFSAWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSAWLKARNGEAAIVIGTRSSLFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPALETLHNVRQRKYHMLRLTRRAGNARPAVQHVLDLKGQQVQAGLAPALITRMRQHLQANNQVILFLNRRGFAPALLCHDCGWIAECPRCDHYYTLHQAQHHLRCHHCDSQRPIPRQCPSCGSTHMVPVGLGTEQLEQALTPFFPGVAISRIDRDTTSRKGALEQQLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHPEHPLLQTLLHKGYDAFAEQALAERQTLQLPPWTSHVIIRAEDHNNQQAPLFLQQLRNLLQASPLVDNQLWILGPVPALAPKRGGRYRWQILLQHPSRIRLQHIVSGTLALINTLPEARKVKWVLDVDPIES
>NZ_CP013990.1|WP_032615278.1|128134_128347_+|50S-ribosomal-protein-L31
MKKDIHPKYEMITANCSCGNSIQIRSTVGHDLNLDVCGKCHPFYTGKQRDVATGGRVDRFNKRFNIPGAK
>NZ_CP013990.1|WP_059306960.1|128667_129348_+|hypothetical-protein
MKLTQLLFALPLISCAAQAGYVDYRHEYYDDGRNYDRVYMSHRFGTGFGVAVEAVSRSDEKQSNDALNNMESNSSEYTASYQFTWQGFVWQPGIAVEMGENMSIYKPYLRVQYNINDNWWTAFRYRTEYTRRNADGKDDRMVYRPEMWLGYNIDNWMFELNGIYKFADNEDLYNNKKEDYEYNFRVAYKIDSWVPFVEVGNVSSGYNTATSDDRQTRLRVGLGYNF
>NZ_CP013990.1|WP_003862042.1|129392_129710_-|met-regulon-transcriptional-regulator-MetJ
MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPNDDDLRKERSDEIPEEAKVIMRELGIDPETWEY
>NZ_CP013990.1|WP_032615276.1|129988_131149_+|cystathionine-gamma-synthase
MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVTQRALAELEGGAGAVMTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALKQALAEKPKLVLVESPSNPLLRVVDIAKICQLSRDAGAISVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPELVTELAWWANNIGVTGSAFDSYLLLRGLRTLSPRMDVAQRNAQAIVDFLKTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLSGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDCEDLIADLENGFRVAAKG
>NZ_CP013990.1|WP_059306961.1|131151_133584_+|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II
MSVIAQAGAKGRQLHKFGGSSLADVKCYLRVAGIMAEYSMPGDMMVVSAAGSTTNQLISWLKLSQTDRLSAHQVQQALRRYQSELIAGLLPADVADGLISTFIQDLERLAGLLDSGVTDAVYAEVVGHGEVWSARLMAAVLQQQGLEAAWLDARDFLRAERGAQPQVDEGLSYPLLQQLLVQHPNKRIVVTGFISRSNAGETVLLGRNGSDYSATQIGALAGVSRVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYTPDQGSTRIERVLASGTGARIVTSHDDICLIEFLVPAGHDFKQTHKEIDLILKRAQVRPLAVGVHTDRHLLQFCYTAEVADSALKILDEAGLPGELRLRQGLALIAMVGAGVTRNPLHCHRFWQQLKGQPVEFTWQSEEGISLVAVMRTAPTESLIQGLHQSLFRAEKRIGLMLFGKGNIGSRWLELFAREQTTLSARTGFEFVLAGVVDSRRSLLNYEGLDASRALAFFNDEAIEQDEESLFLWMRAHPYDDLVVLDVTASEQLADQYLDFASHGFHVISANKLAGASNTRNYRQIHDAFEKTGRHWLYNATVGAGLPVNHTVRDLIESGDSILAISGIFSGTLSWLFLQFDGTVPFTDLVDQAWQQGLTEPDPRVDLSGKDVMRKLVIVAREAGYDIEPGQVRVESLVPADCEEGSVDHFFENGDALNEQMLQRLEAAREMGLVLRYVARFDANGKARVGVEAVRPEHPLAALLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDINRLAQLL
>NZ_CP013990.1|WP_032615268.1|134181_135072_+|methylenetetrahydrofolate-reductase
MSFFHANQREALNQSLAEVNGQINVSFEFFPPRTSEMEQTLWASIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATRDELRTIAQDYWNNGIRHIVALRGDLPPGSGKPDMYATDLVALLKEVGDFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPHWMAKMYEGLDDDAETRKLVGASIAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLGVRPGL
>NZ_CP013990.1|WP_059306962.1|135215_137387_+|catalase/peroxidase-HPI
MSTSDDNQNSGKCPFHQGGYDKSAGAGTNSRDWWPKQLRVDLLNQHSERSNPLGKDFNYRKEFSKLDYSALKGDLKALLTDSQPWWPADWGSYAGLFIRMAWHGAGTYRSVDGRGGAGRGQQRFSPLNSWPDNVSLDKARRLLWPIKQKYGQKISWADLFILAGNVALENSGFRTFGFGAGREDVWEPDLDVNWGDEKAWLEHRHPESLAKSAVGATEMGLIYVNPEGPNASGEPLSAAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAGETTHVGVDPEGGLLEAQGLGWASTHGSGFGADAITSGLEVIWSQTPTQWSNYFFENLYKYDWVQTRSPAGAIQFEASNAPEIMPDPFDPSKKRKPTMLVTDLTLRFDPEFDKISRRFLNDPQAFNEAFARAWFKLTHRDMGPISRYIGPEVPKEELIWQDPLPQPFFHPTAEDIQSLKEAIANSGLSVSELVSVAWASASTFRGGDKRGGANGARLALAPQRSWDVNAVAARVLPVLEGIYKSAHKASLADIIVLAGVVGVEQAAKAAGVNITVPFTPGRIDARQDQTDIGMFTLLQPVADGFRNYRAAIDVSTTESLLIDKAQQLTLTAPEMTVLLGGLRVLGANFDGGKSGVFTDRVGVLSTDFFVNLLDMGTQWKATDESSELFEGRDRVSGEVKYLASRADLVFGSNSVLRALAEVYASSDAHEKFVKDFVAAWVKVMNLDRFDLL
>NZ_CP013990.1|WP_059306963.1|137491_138595_-|glycerol-dehydrogenase
MDRIIQSPGKYIQGADVLTRLGDYLKPLAARWLVVGDKFVLGFAEETLRHSFEQAELYVEIVPFGGECSQNEIDRLRQLAKEANCQAVLGIGGGKTLDTAKALAHFMDVPVAIAPTIASTDAPCSALSVIYTDSGEFDRYLMLPHNPNIVIVDTKVVAGAPARLLAAGIGDALATWFEARACSRSGATTMAGGKCTQAALALAELCYNTLVEEGEKAMLAAEQHVVTPALERVIEANTYLSGVGFESGGLAAAHAIHNGLTAIPDAHHYYHGEKVAFGTLTQLVLENAPVEEIETVAALCHSVGLPITLAQLDIKVDIPAKMRLVAEASCAEGETIHNMPGGATPDQVYAALLVADQYGQRFLQEWE

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Crispr_ID: NZ_CP013990_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013990_2

1038051-1038143

Orphan

Consensus_repeat	Method
GAACCCCACGCGTCAGCGGATTGTGCCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013990_2

>merge|NZ_CP013990|2|1038051-1038143|CRISPRCasFinder
GAACCCCACGCGTCAGCGGATTGTGCCGCGCTGTCAGCGCCAGGTGCTGGCGTAGCCGGGGTGGAACCCCACGCATCAGCGGATTGTGCCGCG

>NZ_CP013990|2|2|1038051-1038143|CRISPRCasFinder
GAACCCCACGCGTCAGCGGATTGTGCCGCG	CTGTCAGCGCCAGGTGCTGGCGTAGCCGGGGTG
GAACCCCACGCATCAGCGGATTGTGCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013990.1\|WP_059307311.1\|1035926_1036922_-\|glycine-betaine/L-proline-ABC-transporter-substrate-binding-protein-ProX	unknown	unknown	gnl\|CDD\|236852
NZ_CP013990.1\|WP_000906486.1\|1025700_1025886_+\|carbon-storage-regulator-CsrA	unknown	unknown	gnl\|CDD\|234973
NZ_CP013990.1\|WP_059307312.1\|1039725_1041813_-\|formate-hydrogenlyase-transcriptional-activator-FlhA	unknown	unknown	gnl\|CDD\|237965
NZ_CP013990.1\|WP_032613556.1\|1038182_1039385_-\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein-ProV	unknown	unknown	gnl\|CDD\|182221
NZ_CP013990.1\|WP_032613573.1\|1027902_1028331_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|224159
NZ_CP013990.1\|WP_032613544.1\|1045130_1045481_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|179630
NZ_CP013990.1\|WP_059307309.1\|1028402_1029947_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NZ_CP013990.1\|WP_059307314.1\|1043985_1044264_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|182435
NZ_CP013990.1\|WP_032613565.1\|1032257_1033433_-\|multidrug-efflux-MFS-transporter-periplasmic-adaptor-subunit-EmrA	unknown	unknown	gnl\|CDD\|185090
NZ_CP013990.1\|WP_059307316.1\|1046855_1048685_+\|formate-hydrogenlyase-subunit-3	unknown	unknown	gnl\|CDD\|181206
NZ_CP013990.1\|WP_032613568.1\|1030098_1030614_+\|S-ribosylhomocysteine-lyase	unknown	unknown	gnl\|CDD\|179399
NZ_CP013990.1\|WP_032613542.1\|1045715_1046174_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|314081
NZ_CP013990.1\|WP_032613540.1\|1046250_1046856_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319876
NZ_CP013990.1\|WP_032613566.1\|1030693_1032241_-\|multidrug-efflux-MFS-transporter-permease-subunit-EmrB	unknown	unknown	gnl\|CDD\|129794
NZ_CP013990.1\|WP_059307313.1\|1042864_1043986_-\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
NZ_CP013990.1\|WP_032613552.1\|1041857_1042868_-\|hydrogenase-expression/formation-protein-HypE	unknown	unknown	gnl\|CDD\|273984
NZ_CP013990.1\|WP_059307310.1\|1034401_1035586_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP013990.1\|WP_059307315.1\|1044254_1045127_-\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|182479
NZ_CP013990.1\|WP_032613564.1\|1033558_1034089_-\|transcriptional-repressor-MprA	unknown	unknown	gnl\|CDD\|182795
NZ_CP013990.1\|WP_059307308.1\|1027339_1027906_+\|fructose-1-phosphate/6-phosphogluconate-phosphatase	unknown	unknown	gnl\|CDD\|182679

Protein	Function_ID	Function_description	E-value
NZ_CP013990.1\|WP_059307311.1\|1035926_1036922_-\|glycine-betaine/L-proline-ABC-transporter-substrate-binding-protein-ProX	gnl\|CDD\|236852	PRK11119, proX, proline/glycine betaine ABC transporter substrate-binding protein ProX.	0
NZ_CP013990.1\|WP_000906486.1\|1025700_1025886_+\|carbon-storage-regulator-CsrA	gnl\|CDD\|234973	PRK01712, PRK01712, carbon storage regulator CsrA.	7.16735e-35
NZ_CP013990.1\|WP_059307312.1\|1039725_1041813_-\|formate-hydrogenlyase-transcriptional-activator-FlhA	gnl\|CDD\|237965	PRK15429, PRK15429, formate hydrogenlyase transcriptional activator FlhA.	0
NZ_CP013990.1\|WP_032613556.1\|1038182_1039385_-\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein-ProV	gnl\|CDD\|182221	PRK10070, PRK10070, proline/glycine betaine ABC transporter ATP-binding protein ProV.	0
NZ_CP013990.1\|WP_032613573.1\|1027902_1028331_+\|DedA-family-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	7.06877e-37
NZ_CP013990.1\|WP_032613544.1\|1045130_1045481_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|179630	PRK03681, hypA, hydrogenase/urease nickel incorporation protein HypA.	2.54675e-60
NZ_CP013990.1\|WP_059307309.1\|1028402_1029947_+\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
NZ_CP013990.1\|WP_059307314.1\|1043985_1044264_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|182435	PRK10409, PRK10409, HypC/HybG/HupF family hydrogenase formation chaperone.	5.60509e-51
NZ_CP013990.1\|WP_032613565.1\|1032257_1033433_-\|multidrug-efflux-MFS-transporter-periplasmic-adaptor-subunit-EmrA	gnl\|CDD\|185090	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA.	0
NZ_CP013990.1\|WP_059307316.1\|1046855_1048685_+\|formate-hydrogenlyase-subunit-3	gnl\|CDD\|181206	PRK08042, PRK08042, formate hydrogenlyase subunit 3; Reviewed.	0
NZ_CP013990.1\|WP_032613568.1\|1030098_1030614_+\|S-ribosylhomocysteine-lyase	gnl\|CDD\|179399	PRK02260, PRK02260, S-ribosylhomocysteine lyase.	8.06368e-107
NZ_CP013990.1\|WP_032613542.1\|1045715_1046174_+\|hypothetical-protein	gnl\|CDD\|314081	pfam11046, HycA_repressor, Transcriptional repressor of hyc and hyp operons. This family is conserved in Proteobacteria. It is likely to be the transcriptional repressor molecule for the hyc and hyp operons, which express, amongst others, the protein HycA. This protein may be harnessed for the reduction of technetium oxide, an unwelcome product of radio-nucleotide bioaccumulation. HycA produces formate hydrogenlyase, one of the key proteins necessary for metal compound reduction.	1.71956e-52
NZ_CP013990.1\|WP_032613540.1\|1046250_1046856_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319876	cd10554, HycB_like, HycB, HydN and similar proteins. This family includes HycB, the FeS subunit of a membrane-associated formate hydrogenlyase system (FHL-1) in Escherichia coli that breaks down formate, produced during anaerobic fermentation, to H2 and CO2. FHL-1 consists of formate dehydrogenase H (FDH-H) and the hydrogenase 3 complex (Hyd-3). HycB is thought to code for the [4Fe-4S] ferredoxin subunit of hydrogenase 3, which functions as an intermediate electron carrier protein between hydrogenase 3 and formate dehydrogenase. HydN codes for the [4Fe-4S] ferredoxin subunit of FDH-H; a hydN in-frame deletion mutation causes only weak reduction in hydrogenase activity, but loss of more than 60% of FDH-H activity. This pathway is only active at low pH and high formate concentrations, and is thought to provide a detoxification/de-acidification system countering the buildup of formate during fermentation.	4.13557e-58
NZ_CP013990.1\|WP_032613566.1\|1030693_1032241_-\|multidrug-efflux-MFS-transporter-permease-subunit-EmrB	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	0
NZ_CP013990.1\|WP_059307313.1\|1042864_1043986_-\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
NZ_CP013990.1\|WP_032613552.1\|1041857_1042868_-\|hydrogenase-expression/formation-protein-HypE	gnl\|CDD\|273984	TIGR02124, Hydrogenase_expression/formation_protein_HypE, hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.	1.92126e-170
NZ_CP013990.1\|WP_059307310.1\|1034401_1035586_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.79219e-75
NZ_CP013990.1\|WP_059307315.1\|1044254_1045127_-\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|182479	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional.	0
NZ_CP013990.1\|WP_032613564.1\|1033558_1034089_-\|transcriptional-repressor-MprA	gnl\|CDD\|182795	PRK10870, PRK10870, transcriptional repressor MprA; Provisional.	1.41044e-123
NZ_CP013990.1\|WP_059307308.1\|1027339_1027906_+\|fructose-1-phosphate/6-phosphogluconate-phosphatase	gnl\|CDD\|182679	PRK10725, PRK10725, fructose-1-phosphate/6-phosphogluconate phosphatase.	1.02124e-141

>NZ_CP013990.1|WP_059307311.1|1035926_1036922_-|glycine-betaine/L-proline-ABC-transporter-substrate-binding-protein-ProX
MRHSVIFATAFATFVSTGTFAAELPGKGITVQPVQSTISEESFQTGLVSRALEKLGYTVNKPSEVDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGTFVSGAAQGYLIDKKTADQYHITNIEQLKDPKIAKLFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDLAKTVDVSHGNYSAMMADTIARFKEGKPVIYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQKDIDTKLPNGMNYGFPVNTMHIVANKAWAEKNPAAAKLFSVMKLPLADINAQNAMMHAGKSSEADVQGHVDGWIKAHQQQFDAWVKEALAAQK
>NZ_CP013990.1|WP_059307310.1|1034401_1035586_-|MFS-transporter
MTKSTQGLSPALILLMSVATGLAVASNYYAQPLLETIARNFSLSASSAGFIVTAAQLGYAVGLLFLVPLGDMFERRAMIVSMTLLAAGGMLITASSQSLAMMIFGTALTGLFSVVAQILVPLAATLASPEKRGKVVGTIMSGLLMGILLARTVAGLLAGIGGWRTVYWVASVLMVVMALALWRGLPKVKSETHLNYPQLLGSVFSLFTHDKLLRTRALLGCFTFANFSILWTSMAFLLAAPPFNYSEGMIGLFGLAGAAGALGARPAGGLADKGKSHITTTASLVLLLLSWAAIWYGHVSVLALIVGILVLDLTVQGVHITNQTVIYRVKPEARNRLTAGYMTSYFIGGAAGSLISASAWQHAGWAGVCAVGAVMAILNLLVWWRGYHRQDAIQ
>NZ_CP013990.1|WP_032613564.1|1033558_1034089_-|transcriptional-repressor-MprA
MDSSFTPIEQMLKFRASRYADFPYQEILLTRLCMHMQGKLLENRNKMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSSLSGTEKEQLEHITRKLLTRLDQMDEDGAVLEALR
>NZ_CP013990.1|WP_032613565.1|1032257_1033433_-|multidrug-efflux-MFS-transporter-periplasmic-adaptor-subunit-EmrA
MSANAENTTPQQPVNKKKGKRKRALLLLTLLFIIIAVAYGIYWFLVLRHTEETDDAYVAGNQVQIMAQVSGSVTKVWADNTDFVQKGDVLVTLDPTDAQQAFEKAQTELASSVRQTRQLMINSKQLQASINVQKTALAQAQTDFNRRVPLGNANLIGREELQHARDAVASAQAQLDVSVQQYNANQAMVLDTTLDQQPAVKQAATEVRNAWLALQRTKIVSPMTGYVSRRSVQPGAQISSSTPLMAVVPATNLWVDANFKETQLAHMRIGQSATIVSDIYGDEVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDEKQLADHPLRIGLSTLVTVDTANRDGQMLANQARSNPAYESNAREISLEPVNKLIDEIVKANAG
>NZ_CP013990.1|WP_032613566.1|1030693_1032241_-|multidrug-efflux-MFS-transporter-permease-subunit-EmrB
MQQQKPHKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNLGSSLSQGTWVITSFGVANAISIPITGWLAKRVGEVKLFLWSTTAFVIASWACGVSSSLTMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGYISDNYHWGWIFFINVPIGAVVVLLTLQSLRGRETRTEQRRIDGVGLALLVLGIGSLQIMLDRGKELDWFASQEIIVLTVVAVVALSFLIVWELTDDNPIVDLSLFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGVIPVLLSPIIGRFAHKLDMRRLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPPERMAAASSLSNFMRTLAGSIGTSMTTTMWTNRESLHHAQLTESVNVFNPQAQEVYSQLQGMGMSEQQASGWIAQQITAQGLIISANEIFWLSAGVFIVLLGLIWFAKPPFGAGGGGGGAH
>NZ_CP013990.1|WP_032613568.1|1030098_1030614_+|S-ribosylhomocysteine-lyase
MPLLDSFTVDHTRMEAPAVRVAKTMHTPHGDTITVFDLRFCVPNQEVMPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGVPEETRVADAWKAAMADVLKVKEQNQIPELNVYQCGTYQMHSLEEAQEIARHILERDVRVNSNEELALPKDKLQELHI
>NZ_CP013990.1|WP_059307309.1|1028402_1029947_+|glutamate--cysteine-ligase
MIPDVSQALAWLENHPQALKGIQRGLERETLRVNADGSLATTGHPQALGSALTHKWITTDFAEALLEFITPVDGDIDHMLKVMRDIHRHSARNLGDERMWPLSMPCYIEQGQDIELAQYGTSNVGRLKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKCGETDKEAISAGYFRLIRNYYRFGWVIPYLFGASPAICSSFLQGKPTTLPFEKTDCGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLHEYVAGLKRAIKTPSEAYSDIGLEKDGKRLQINTNVLQIENELYAPIRPKRVTRSGETPSDALQRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCVLADAPEMSADELLCTRTNWNRVILEGRKPGLTLGIGCQTAQFPLQQVGKDLFRDLKRVAQTLDSVYGGEAYQQVCDQLVESFDNPELTFSARILRSMIDQGIGGTGRALSAEYRDMLRQEPLEVLSEAEFAAERDASVVRQSEIEAADTESFEAFLAKQA
>NZ_CP013990.1|WP_032613573.1|1027902_1028331_+|DedA-family-protein
MSDLLSLSSLFASSFLSATLLPGNSEVVLVAMLLSGVSQPWLLVLIATMGNSFGGLTNVILGRFFPLRKTSRWQEKAVGWLKRYGAATLLLSWMPVIGDLLCLLAGWMRISWGPVLFFLCLGKALRYVLVAVVTMQGMTWWH
>NZ_CP013990.1|WP_059307308.1|1027339_1027906_+|fructose-1-phosphate/6-phosphogluconate-phosphatase
MYAQYDGLIFDMDGTILDTEPTHRKAWADVLGRYGMRFDLQAMIALNGSPTWRIAQAVIELNQADLDPHLLAREKTDAVKAMLLDTVRPLPLIEVVKEWHGRRPMSVGTGSESAIAEALLNHLGLRRYFSTVVAADHVKNHKPAPDTFLLCAELMGVPAARCVVFEDADFGIQAAHAAGMDAVDVRLL
>NZ_CP013990.1|WP_000906486.1|1025700_1025886_+|carbon-storage-regulator-CsrA
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY
>NZ_CP013990.1|WP_032613556.1|1038182_1039385_-|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein-ProV
MAIKLEVKNLYKVFGEHPQRAFKYIEKGLSKEHILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLNNTAFGMELAGVPASERQEKALDALRQVGLENYAHAYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQSRHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGIIRRTPGFGPRSALKLLQDEDREYGYLVERGNKFVGVVSIDSLKTALGENQGIDAALIDAPLAVDAETPLSELLSHVGQAPCAVPVVGEEQQYVGIISKRMLLQALDREGANNG
>NZ_CP013990.1|WP_059307312.1|1039725_1041813_-|formate-hydrogenlyase-transcriptional-activator-FlhA
MSYTPTNDPLDQGLFDITRTLLQQPDLCALARSLAWHARQMNLADRANILLWQPEQRRVYLYSTDEQDRDIRYEDEPLLANGPFRRMLSRPDVLHCQAETFKETWPALARLDLYAPLAHYCLTPLAADGRIFGGCEFLRNNDRPWSDSDFSRLQTLTQAAGLAVEQLMARQNSSDSYEVLCRERNDFRLLVAITNAVLSKLDLDELVTEVSREIQRNFGIDSISMVLRSERKGKLLVYSTHYLDKNAPLYDQSEVDEKGTLSEKVMRNKKMLMLNLHSRDQHAPYERMLFDMWGEQDQTLCLFPLIFRERILGTLKLAQCKAQVFTASNLELLNQIAERIAIAVDNALSYREISHLKERLIDENLALTEQINNVATDFGEIIGRSSPMMTVMKQVEMVAHSNSTVLILGETGTGKELIARAIHNLSGRSDRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQHIGRFELADKSTLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNRTIHTDVRLIAATNRDLTQMVADREFRSDLYYRLNVFPIFLPPLRERPEDIPLLVKSFTSKIAHRLGRNIDSIPADTLRQLSKMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIDYPRFVSATPPETAVSTLREGEEEYQHIMRVLKETNGVIAGPRGAAQRLGLKRTTLLSRMKRLGIDKNDLL
>NZ_CP013990.1|WP_032613552.1|1041857_1042868_-|hydrogenase-expression/formation-protein-HypE
MKQITLAHGSGGQAMQQLIGELFMRAFANPLLNEQEDQARIPLQELTAQGDRLAFSTDSYVIDPLFFPGGDIGKLAVCGTANDVAVSGAIPRWLSCGFILEEGLEMATLERIVASMAATAAAAGITIVTGDTKVVPRGAADKVFINTAGIGSIPAGVNWGMRQIAAGDVLLVSGTLGDHGATILNLREGLGLDGDLHSDCAVLTPLIQALRAEPGIKALRDATRGGVNAVAHEFAASSGCGIELQESALPVKPAVRGACELLGLDPLNFANEGKLVIAVGRHEAERVLGLVRQHPLGQDAAIIGEVVERKGVRLAGLYGVKRTLNLPHAEPLPRIC
>NZ_CP013990.1|WP_059307313.1|1042864_1043986_-|hydrogenase-formation-protein-HypD
MRFVDEYRDPQKVMRLIETLNARANALPYTPQRPLRIMEVCGGHTHAIFKFGLDQLLPENIEFIHGPGCPVCVLPMGRIDTCIEIASHPEVIFCTFGDAMRVPGKNGSLLDARMRGADVRIIYSPADALKLAQQHPERKVVFFGLGFETTMPATALTLRQAKTANVQNFFFFCQHITLIPVLKSLLEQPENGIDAFLAPGHVSMVIGTHAYDFIADEYQRPLVVAGFEPVDLLQGVLMLVEQKIAGVSEVENQYRRIVPEEGNPLAQAVIDKVFTIEGESEWRGLGVIDHSGVHLTDAYRQFDAERHFSTRAQDICDDPQARCGAVLTGRCKPAQCPLFGNKCTPQSAFGALMVSSEGACSAWYQYRSQECES
>NZ_CP013990.1|WP_059307314.1|1043985_1044264_-|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCIGVPGKITAIADGMQARVEVCGVLRDVDLTLVGACDENGNSRLGQWVLVHVGFAMSVINEEEALDTLAALQNMFDVEPDVGPLLFGEEAR
>NZ_CP013990.1|WP_059307315.1|1044254_1045127_-|hydrogenase-nickel-incorporation-protein-HypB
MCTTCGCDSGNLYIEGDERNAHSAFRSAPFSPAPRQAFHVTRIGGGDFAPTEQQPGQLDYGQGVAGTHAPGLSQRKMVEIEIDVLSKNNQLAQRNRQRFSARQQLALNLVSSPGSGKTTLLTETLKRLQHRVSCAVIEGDQQTVNDAERIRATGTPAIQVNTGKGCHLDAQMIHDAMQRLPLDDGGIMFIENVGNLVCPASFDLGERHKVAVLSVTEGEDKPLKYPHMFAAASIMLLNKVDLLPYLTFDVDKCLAAAREVNPDIAILLVSATRGDGMDAWLNWLETQRCA
>NZ_CP013990.1|WP_032613544.1|1045130_1045481_-|hydrogenase-maturation-nickel-metallochaperone-HypA
MHEITLCQQALELIEQQAHQHHAKRVTDVWLRVGAFSCVESSALQFCFELVCRGTLAEGCGLHLEEQQAECWCQDCQEYVQLLTHRVRRCPQCGGASLNIVADDGLHITRLEIEQE
>NZ_CP013990.1|WP_032613542.1|1045715_1046174_+|hypothetical-protein
MTLTELSEKAHFIAGQQRTLRAHWNHYGNSLVQAITLSKASLYLSVGCNNDSGLGFWLFDHFLIRVTPEQAFNGHIFNYTIEARDNEESVLIGRARLSDDGMLDGTIAIDQREAVLDHFLEKINGVYAALYAATERGESLTLATLAQHHAAV
>NZ_CP013990.1|WP_032613540.1|1046250_1046856_+|4Fe-4S-dicluster-domain-containing-protein
MNRFVIADPTLCIGCHTCEAACSENHRQHGLQSQPRLKVMRNNTDSAPQLCHHCEDAPCAQVCPVNAITRIDGAIQLNESLCVSCKLCGIACPFGAVEFAGSRPRAIPANCNTSKAPMAAPAPARVSPFLDWVPGVRAIGVKCDLCYFDPDGPACVRTCPTKSLRLINNEDIARASRNKRELTLHTDLGDLSLFQSQQGEL
>NZ_CP013990.1|WP_059307316.1|1046855_1048685_+|formate-hydrogenlyase-subunit-3
MNAFSLINPALGIYVISAVLAWVVCAHKPLSGAIAGVGGAMASAMAVGAGAIALIASQTGPLYAEMAWLHIGMQMTGIRAIWLIAIGLPACLVSLYTIAWHRHPQAKANGLLTNLLMAAAVAAIMVDNLGWLVVMAEVMALCGAFLTGCAQSGKLWFVLGRLGTILLAIACWQAWSYYGTLNFGAMSALATAQAPGASIWLPGLAGFGLLAGVIPLHGWAPQAHANASAPAAALFSTVVMKVGLYGMLTVSLSGALPPLWLGVLLLVMGMLTAFIGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIALHSNLLIALGFTGGLYHLVSHGLFKTTLFLGAGAVWYRTGHRDIEKLGGIGKKMPLISLAMLVGLMAMAALPPLNGFAGEWVIYQSFFNLGTHDAFIARLLGPLLATGLAITGALAVMCMAKVYGVTFLGAPRTKEAENACCAPWLMTASTVLAALCCVAGGVAAPWFLPIVSQLFPVSGGEISTVSQPMITLLLLAGLLLPFILMVLCKGDRLPNRSRGFAWVCGYDHEAAMVITAHGFAMPVKESFAPVLKLRKWLNPVRFIPGWQCSSTAVLFHRIALIELAVLVVVVISRGA

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Crispr_ID: NZ_CP013990_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013990_3

1109584-1109673

Orphan

Consensus_repeat	Method
GCTTGCCAGCAAGCCGCTCTGGTTGTTCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013990_3

>merge|NZ_CP013990|3|1109584-1109673|CRISPRCasFinder
GCTTGCCAGCAAGCCGCTCTGGTTGTTCAGCGCACCTGCGCTCAGGCTGAAGCCGCCGTTGCTTGCCAGGAAGCCGCTCTGGTTGTTCAG

>NZ_CP013990|3|3|1109584-1109673|CRISPRCasFinder
GCTTGCCAGCAAGCCGCTCTGGTTGTTCAG	CGCACCTGCGCTCAGGCTGAAGCCGCCGTT
GCTTGCCAGGAAGCCGCTCTGGTTGTTCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013990.1\|WP_032613418.1\|1101047_1101380_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013990.1\|WP_032613384.1\|1118305_1119709_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP013990.1\|WP_059307349.1\|1114583_1115096_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013990.1\|WP_032613381.1\|1119786_1120659_-\|manganese-catalase-family-protein	unknown	unknown	gnl\|CDD\|226076
NZ_CP013990.1\|WP_032613425.1\|1098780_1099113_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013990.1\|WP_032613421.1\|1100412_1101045_-\|SMI1/KNR4-family-protein	unknown	unknown	gnl\|CDD\|378155
NZ_CP013990.1\|WP_164530112.1\|1112148_1113771_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP013990.1\|WP_032613400.1\|1115105_1115558_+\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP013990.1\|WP_032613397.1\|1115554_1116079_+\|2-oxo-tetronate-isomerase	unknown	unknown	gnl\|CDD\|235149
NZ_CP013990.1\|WP_032613395.1\|1116088_1117075_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235935
NZ_CP013990.1\|WP_032613411.1\|1102667_1102892_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013990.1\|WP_032613403.1\|1114048_1114441_-\|YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|182212
NZ_CP013990.1\|WP_059309075.1\|1101816_1102026_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013990.1\|WP_032613386.1\|1117295_1118306_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213
NZ_CP013990.1\|WP_032613415.1\|1101433_1101709_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013990.1\|WP_032613427.1\|1097330_1097840_-\|DUF2247-family-protein	unknown	unknown	gnl\|CDD\|370776
NZ_CP013990.1\|WP_032613408.1\|1111600_1112149_-\|toxin-activating-lysine-acyltransferase	unknown	unknown	gnl\|CDD\|367187
NZ_CP013990.1\|WP_127472187.1\|1095517_1095871_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013990.1\|WP_032613423.1\|1099974_1100391_-\|immunity-63-family-protein	unknown	unknown	gnl\|CDD\|317917
NZ_CP013990.1\|WP_059307346.1\|1095905_1096406_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|317918

Protein	Function_ID	Function_description	E-value
NZ_CP013990.1\|WP_032613400.1\|1115105_1115558_+\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	1.765e-32
NZ_CP013990.1\|WP_032613384.1\|1118305_1119709_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP013990.1\|WP_032613421.1\|1100412_1101045_-\|SMI1/KNR4-family-protein	gnl\|CDD\|378155	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1). Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation. Genome contextual information showed that SMI1 are primary immunity proteins in bacterial toxin systems.	6.79788e-05
NZ_CP013990.1\|WP_164530112.1\|1112148_1113771_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	0
NZ_CP013990.1\|WP_032613395.1\|1116088_1117075_+\|SDR-family-oxidoreductase	gnl\|CDD\|235935	PRK07109, PRK07109, short chain dehydrogenase; Provisional.	5.59957e-144
NZ_CP013990.1\|WP_032613397.1\|1115554_1116079_+\|2-oxo-tetronate-isomerase	gnl\|CDD\|235149	PRK03657, PRK03657, 2-oxo-tetronate isomerase.	6.11194e-84
NZ_CP013990.1\|WP_032613403.1\|1114048_1114441_-\|YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|182212	PRK10053, PRK10053, YdeI family stress tolerance OB fold protein.	8.36144e-80
NZ_CP013990.1\|WP_032613386.1\|1117295_1118306_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	9.80198e-102
NZ_CP013990.1\|WP_032613408.1\|1111600_1112149_-\|toxin-activating-lysine-acyltransferase	gnl\|CDD\|367187	pfam02794, HlyC, RTX toxin acyltransferase family. Members of this family are enzymes EC:2.3.1.-. involved in fatty acylation of the protoxins (HlyA) at lysine residues, thereby converting them to the active toxin. Acyl-acyl carrier protein (ACP) is the essential acyl donor. This family show a number of conserved residues that are possible candidates for participation in acyl transfer. Site-directed mutagenesis of the single conserved histidine residue in Escherichia coli HlyC resulted in complete inactivation of the enzyme.	1.05213e-56
NZ_CP013990.1\|WP_059307346.1\|1095905_1096406_-\|hypothetical-protein	gnl\|CDD\|317918	pfam15601, Imm70, Immunity protein 70. A predicted immunity protein with an alpha+beta fold and conserved tyrosine and tryptophan residues. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, which usually contains toxin domains of the Tox-REase-10 family.	7.56641e-14
NZ_CP013990.1\|WP_032613381.1\|1119786_1120659_-\|manganese-catalase-family-protein	gnl\|CDD\|226076	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism].	1.15666e-127
NZ_CP013990.1\|WP_032613423.1\|1099974_1100391_-\|immunity-63-family-protein	gnl\|CDD\|317917	pfam15599, Imm63, Immunity protein 63. A predicted immunity protein with an alpha+beta fold and a conserved E+G and ExxY motifs. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, which usually contains toxin domains of the Ntox40, Tox-CdiAC and Tox-ARC families. The protein is also found in poly-immunity loci in polymorphic toxin systems.	1.26792e-25
NZ_CP013990.1\|WP_032613427.1\|1097330_1097840_-\|DUF2247-family-protein	gnl\|CDD\|370776	pfam10004, DUF2247, Uncharacterized protein conserved in bacteria (DUF2247). This domain, found in various hypothetical bacterial proteins, has no known function.	2.9343e-50

>NZ_CP013990.1|WP_032613411.1|1102667_1102892_-|hypothetical-protein
MKNSTKSFINLVYLCCAIGLAVFILTLLGRLVGAGLAWNVKEDFPFSFKDVLICLELTWLGLPAGLIIWFFYHR
>NZ_CP013990.1|WP_059309075.1|1101816_1102026_-|hypothetical-protein
MAIFLEFTDEYSLNPDAAVEMMEHIAAELQLLKNDEKIRVIDSFAEIAKAYRGDESDFVKALPDTLGLR
>NZ_CP013990.1|WP_032613415.1|1101433_1101709_-|hypothetical-protein
MTIEKTTLIVDKMQRMATLLELGGYAEWSASIFKLAKKYELDSDDTKHIFLNLYGGMGSLNDLVIYRNGKVLMSENDELDQLRRDLFNLLS
>NZ_CP013990.1|WP_032613418.1|1101047_1101380_-|hypothetical-protein
MRESQDIYNDIGAVLLSIAPEDAVEIILNAKLEPESDCGEFTYDYVDKQGNQHWVTETADASARLLDLVVELRNFFVDNVQSLEKPFWQGCEVTVNVETLRINIDFKYEN
>NZ_CP013990.1|WP_032613421.1|1100412_1101045_-|SMI1/KNR4-family-protein
MSIFWEKLLSVCSSDISSEKGQKVPAAFHDYPLVEDLINLLNKRNGFYGFESALHVFSVETDGEEIGLIDWNDNSLWIDCYDDLARNAIFFAEDVFGGQFCIKKDGIYTFDPETGSFDYLAPDINEWCKNILEDYQVLTGYPLANAWQKKYGSIPAGYRLAPKIPFVVGGKYEPDNLYLEKSTVAMKARAHIALQIRDVPDGSNIQLTLK
>NZ_CP013990.1|WP_032613423.1|1099974_1100391_-|immunity-63-family-protein
MLANINEIQKQVDEIILRAGFPKHSVNLCSAPYGDGTPYISFEKDSYNYIYSERGYEFSRKVTHSLNTLLYWIMSEFAYQIAYQYELEHRVEGRDGRRIAFPKFIEIMANMNPAWESEARVDIQKILAEAPYDDSLYT
>NZ_CP013990.1|WP_032613425.1|1098780_1099113_-|hypothetical-protein
MRNDQEIYKDIGTVLYSIAPDEAKKIIMRAELSPENDHCKYEYDYLDAADEIQWLTAGGRANTDILRYLVELRNYYIENNLTNGRPAWHGCEVTLDIEKMKLNIDFRYDD
>NZ_CP013990.1|WP_032613427.1|1097330_1097840_-|DUF2247-family-protein
MMLYPVPYDFIVKNTHLSWCDVKWGYENNLIASDVPIKIAEQIVLTGSYTDSELELSFLMPENSNEVSLFLEKLCTGFEQDNDSTIRQKWLFIVLSWLWNNRASFADPLSEVEIIYADFDYPAEIEGFVKYMPPSDGYDPSTHSQTENMNHLMENWVNYLEEKFVEYKK
>NZ_CP013990.1|WP_059307346.1|1095905_1096406_-|hypothetical-protein
MKNVGILAAMTLAEVGPASDVKGFFNVVLSLLENGTNGSKYPWVMEKLYRGSLAYDDLYKVKNELDSIKNEFSVILPDNIEWSSFGIDKNHSRLNFEGRSLFSVFERFFKAFDEALECTEVYYQSFNEYIPVRVGFTDAPHYIDDVNRTSEQYNALGPNDESFWLQ
>NZ_CP013990.1|WP_127472187.1|1095517_1095871_-|hypothetical-protein
MAGWLYFGGQDGVSLGSSAIDFIASYLRPYIAGVSTEVMEKVYETYDLFDDTLDFSALSSKDYMHCYSQFLKSFETDLAVVPIINGKSRQWAIGIWHDEIKPKMQASPLYNPDLLNK
>NZ_CP013990.1|WP_032613408.1|1111600_1112149_-|toxin-activating-lysine-acyltransferase
MRVGHLDIKAPLILGGQESEAEVLGATVWLWMHSPMHRDAPLHALPTLLLPIIKRQQYVLVSENDRPVFFLSWASMNEEAEARYLTRPAIEMKEEDWDSGERIWFSDWIAPFGHTPAMYNLMRRDIFPDHVCRALYHRGAERGKRVMLFHGSHVSRQHAREWQQNHPLTVSLPEAFKGTNHE
>NZ_CP013990.1|WP_164530112.1|1112148_1113771_-|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MIPAQAAEPDNQFIIQQQRQRALEQQLTPPVPDVRLSEPSSGFGKIAFPTESPCFPINRVELSGQQALPHWVPLQRIADQAQGRCLGGKGINLLMSTMQNRLVDHGWITTRVLAPSQDLKSGTLKLTIVPGTIRHVRLTKESDDYIQLYSAFPAHEENLLDLRDIEQGLENLQRLPTVEANMELLPGENPGESDVVITRKQSKMWRIGLSLDDAGTETTGRYQGGVTLSLDNPFSLSDLLYVSASHDLNDKGGKGSKNYTAHYSVPFGYWMLGVTGSDYDYHQTVAGLNSDYRYSGKSKNLDIQLSRVLHRSGSQKTTFSYDVLARETRNFIDDTEVGVQRRQTAGWRIGLDHRHYIGQATLDAGISYQRGTRWFGAQPAPEEFWGDATALSKITLISGQLDLPFAIGTQNFRYNVQYLRQISNTPLTPQDQFAIGNRWTVRGFDGERTLSASHGWYVRNDLAWRTPLPNQEFYLGADYGEVGGYSSDLQVGKHLAGGVAGLRGNAFNTGYDLFAGTPFSKPDGFETSDLTLGFNLNWSW
>NZ_CP013990.1|WP_032613403.1|1114048_1114441_-|YdeI-family-stress-tolerance-OB-fold-protein
MKLTVAPLLCCLLISTAYAEDNGGLKKDTAPPAPHSLDDGYRGAEDARIMTVEQAKEMHDGATISLRGNLIDGGEGDKFKFRDKTGTIDTVIPKAVFDGRTVQPDNMISINGSLDKKSTPPVVRVDRIQK
>NZ_CP013990.1|WP_059307349.1|1114583_1115096_+|hypothetical-protein
MAKVKESSPPLPGVKQNHTALQFEYDARRFGFVLLLLIIAAALAGVFSGGYFSDATKTNAAKSVQVKYQRFGRLQTPLELKITLPGQGTAPLTLRVGGEYMARTQTDNIWPQPDEMHSEGGELVLVYQEAKSRKDFNVWIYNTPDKPGKTVTTVTVNNQPGLSFWQFIYP
>NZ_CP013990.1|WP_032613400.1|1115105_1115558_+|DUF421-domain-containing-protein
MEMILRAVAIYLILLVVFKIAGRRALLQMTSFDLILLLIISEATQQALLGDDFSVTGAMLTIITLVVIDMLFGLAKKYISGAESMFDGSPVILVVHGELQQEKLKKVDVSCDDILVSARQNHGIYQLEKIKYAILERNGHISIIPEESES
>NZ_CP013990.1|WP_032613397.1|1115554_1116079_+|2-oxo-tetronate-isomerase
MKENIWNQAKTTKELTRQVSTVLTDLGWLLTTAESCTGGNVASALCAEKDTASFFGTGVVTFNNEAKHKVLGVSNATLEKYTAVSSQTVGEMAEGALKLADADVSIAISGYAGPDGGEDGTPAGTVWFGWCFRGEVTTAVQHFTGECEDVIEKAVRYALSELLRQVPHWKKQLH
>NZ_CP013990.1|WP_032613395.1|1116088_1117075_+|SDR-family-oxidoreductase
MSVVVITGATAGVGKATALRFAAAGYDVGLIARDDHSLEATRAEVANYGVNCHAVSVDVVDATALSQAAQTLADQLGAIDVWINNAMCTTLAPFYSITDDEFRRVTEVTYLGCVNGTRAAMEQMIPRDSGVIIQVGSALAYRSIPLQSAYCGAKAAIRGFTDALRTELMHERSGVHLAMVQMPGLNTPQFDWARNKFAYSMRPVAPVFQPEVAAEAIYGVAQKPVRELWVGRSTIGAIVGQFLFPGLLDRMMVKNAWEGQMEEALNPPDRQDNLANPVGGEHRIHGHFSPEAKSRAAAITSGVPGKVLVGTAVVTGLVLIGKLIGRRK
>NZ_CP013990.1|WP_032613386.1|1117295_1118306_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MGVDISVIWFAIIVFATLMYIIMDGFDLGIGMLFYFERDPQARDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALTIPLTAMLIGLIFRGVAFEFRFKATPSHRGFWDISFAAGSLLATFSQGIVVGAMINGFDVEGRRFAGSALDWLTPFNLFCGLGLMVAYTLLGTTWLIMKSEGALQRHMRDLTRHVLLALLAVVAVVSIWTPLGWQFVADRWFSLPNFFYFLPVPILVAVCGVLIWRLTRNPHSHARPFLLTLGLIFLGFSGLGISLWPNIIPPGITIWDAAAPPSSQLFMLVGTLLIIPLILVYTAWSYYVFRGKVTDTEGYH
>NZ_CP013990.1|WP_032613384.1|1118305_1119709_-|cytochrome-ubiquinol-oxidase-subunit-I
MFELDAFHLARLQFAFTVSFHIIFPALTIGLASYLVVLEGMWLKTKNDVWRSLYHFWLKIFAVNFGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNKVGPGLHFFATCMVALGTLMSTFWILASNSWMHTPQGFSIENGQVIPEDWFAIIFNPSFPYRLIHMSIAAFLSSALFVGASGAWHLLRGNDSPAVRKMFSMALWMALLVAPIQAFVGDMHGLNTLEHQPAKIAAIEGHWENPPGEATPLLLFGVPDMEEERTKYGLEIPALGSLILTHSLDKQVPALKDFPKDERPNSLIVFWSFRVMVGLGLLMILMGVVSLWLRHRHRLYHSRAFHWFALSMGPAGLVAILAGWITTEVGRQPWVVYGYLRTIDAVSLHSTLQMSISLLAFFVVYCSVFGVGYVYLVRLIKKGPQPTDNLSLNTDGRPARPLSAAEPVPEEEKP
>NZ_CP013990.1|WP_032613381.1|1119786_1120659_-|manganese-catalase-family-protein
MFRHVKQLQYTVRVAEPNPGLANLLLEQFGGPQGELAAACRYFTQGLGDDDPARREMLMDIATEELSHLEIIGTLVGMLNKGAKGELAEGTESEAELYRSLTANGNDSHITSLLYGGGPPLTNSAGVPWTAAYIDTIGEATADLRSNIAAEARAKIIYERLINVTDDVGVKDALAFLMTREAAHQLSFEKALQSIRNNFPPGKLPPIEQYATTYYNMSAGDDLRGSWNSDENFEYVADPQPAVDGGDGTAQVKLTKEQAAMLKAMAARTESDPDANPLTGAELGAGKEKP

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Crispr_ID: NZ_CP013990_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013990_4

1121843-1121931

Orphan

Consensus_repeat	Method
CCACCCTTTTTACCTGCTTCAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013990_4

>merge|NZ_CP013990|4|1121843-1121931|CRISPRCasFinder
CCACCCTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCGCCGCTTTGCTGTCCACCTTTTTTACCTGCTTCAGA

>NZ_CP013990|4|4|1121843-1121931|CRISPRCasFinder
CCACCCTTTTTACCTGCTTCAGA	TGCGCGCTGCGGGTCATTTTTGAAATTACCGCCGCTTTGCTGT
CCACCTTTTTTACCTGCTTCAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013990.1\|WP_098946302.1\|1128758_1129928_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP013990.1\|WP_032613395.1\|1116088_1117075_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235935
NZ_CP013990.1\|WP_032613369.1\|1124537_1124972_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP013990.1\|WP_032613388.1\|1122569_1123088_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013990.1\|WP_059307349.1\|1114583_1115096_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013990.1\|WP_059307350.1\|1124042_1124528_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP013990.1\|WP_032613384.1\|1118305_1119709_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP013990.1\|WP_032613374.1\|1123234_1123921_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP013990.1\|WP_032613400.1\|1115105_1115558_+\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP013990.1\|WP_059307353.1\|1129938_1132131_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|274550
NZ_CP013990.1\|WP_059307351.1\|1125072_1126029_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP013990.1\|WP_032613397.1\|1115554_1116079_+\|2-oxo-tetronate-isomerase	unknown	unknown	gnl\|CDD\|235149
NZ_CP013990.1\|WP_032613362.1\|1126842_1127427_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013990.1\|WP_032613360.1\|1127730_1128123_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013990.1\|WP_032613379.1\|1120674_1121181_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226210
NZ_CP013990.1\|WP_032613403.1\|1114048_1114441_-\|YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|182212
NZ_CP013990.1\|WP_032613386.1\|1117295_1118306_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213
NZ_CP013990.1\|WP_032613381.1\|1119786_1120659_-\|manganese-catalase-family-protein	unknown	unknown	gnl\|CDD\|226076
NZ_CP013990.1\|WP_032613377.1\|1121212_1121707_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226210
NZ_CP013990.1\|WP_059307352.1\|1126032_1126821_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|366736

Protein	Function_ID	Function_description	E-value
NZ_CP013990.1\|WP_032613395.1\|1116088_1117075_+\|SDR-family-oxidoreductase	gnl\|CDD\|235935	PRK07109, PRK07109, short chain dehydrogenase; Provisional.	5.59957e-144
NZ_CP013990.1\|WP_032613369.1\|1124537_1124972_-\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	1.14198e-23
NZ_CP013990.1\|WP_098946302.1\|1128758_1129928_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	5.84398e-100
NZ_CP013990.1\|WP_032613374.1\|1123234_1123921_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	9.46493e-70
NZ_CP013990.1\|WP_032613384.1\|1118305_1119709_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP013990.1\|WP_059307350.1\|1124042_1124528_-\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	1.76637e-29
NZ_CP013990.1\|WP_032613400.1\|1115105_1115558_+\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	1.765e-32
NZ_CP013990.1\|WP_059307353.1\|1129938_1132131_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP013990.1\|WP_059307351.1\|1125072_1126029_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.96954e-74
NZ_CP013990.1\|WP_032613397.1\|1115554_1116079_+\|2-oxo-tetronate-isomerase	gnl\|CDD\|235149	PRK03657, PRK03657, 2-oxo-tetronate isomerase.	6.11194e-84
NZ_CP013990.1\|WP_032613379.1\|1120674_1121181_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|226210	COG3685, COG3685, Uncharacterized protein conserved in bacteria [Function unknown].	4.52944e-64
NZ_CP013990.1\|WP_032613403.1\|1114048_1114441_-\|YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|182212	PRK10053, PRK10053, YdeI family stress tolerance OB fold protein.	8.36144e-80
NZ_CP013990.1\|WP_032613386.1\|1117295_1118306_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	9.80198e-102
NZ_CP013990.1\|WP_032613381.1\|1119786_1120659_-\|manganese-catalase-family-protein	gnl\|CDD\|226076	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism].	1.15666e-127
NZ_CP013990.1\|WP_032613377.1\|1121212_1121707_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|226210	COG3685, COG3685, Uncharacterized protein conserved in bacteria [Function unknown].	2.30822e-63
NZ_CP013990.1\|WP_059307352.1\|1126032_1126821_+\|phosphotransferase	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	3.55275e-06

>NZ_CP013990.1|WP_032613377.1|1121212_1121707_-|ferritin-like-domain-containing-protein
MNMKSIEDVFIHLLSDTYSAEKQLTRALAKLSREAASPDLSAAFKAHLEETHGQIERIDQIVEKTPNIKLKRMKCVAMEGLIEEANEVLESTEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYTQAVKLLAETLEEEKSTDLKLTDLAVGNINQKAEK
>NZ_CP013990.1|WP_032613379.1|1120674_1121181_-|ferritin-like-domain-containing-protein
MNHVEHYHDWLRDAHAMEKQAESMLESMASRIDNYPDVRARIEQHITETKQQITVLEEILDRNDISRSMLKDSMSKMMAFGQSVGGMVTSDEIVKGSISGYVFEQFEIACYTSLLAAAKKAGDMASVPAIESILAEEQRMADWLIQHIPDTTEQFLLRSDADGVEAKK
>NZ_CP013990.1|WP_032613381.1|1119786_1120659_-|manganese-catalase-family-protein
MFRHVKQLQYTVRVAEPNPGLANLLLEQFGGPQGELAAACRYFTQGLGDDDPARREMLMDIATEELSHLEIIGTLVGMLNKGAKGELAEGTESEAELYRSLTANGNDSHITSLLYGGGPPLTNSAGVPWTAAYIDTIGEATADLRSNIAAEARAKIIYERLINVTDDVGVKDALAFLMTREAAHQLSFEKALQSIRNNFPPGKLPPIEQYATTYYNMSAGDDLRGSWNSDENFEYVADPQPAVDGGDGTAQVKLTKEQAAMLKAMAARTESDPDANPLTGAELGAGKEKP
>NZ_CP013990.1|WP_032613384.1|1118305_1119709_-|cytochrome-ubiquinol-oxidase-subunit-I
MFELDAFHLARLQFAFTVSFHIIFPALTIGLASYLVVLEGMWLKTKNDVWRSLYHFWLKIFAVNFGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNKVGPGLHFFATCMVALGTLMSTFWILASNSWMHTPQGFSIENGQVIPEDWFAIIFNPSFPYRLIHMSIAAFLSSALFVGASGAWHLLRGNDSPAVRKMFSMALWMALLVAPIQAFVGDMHGLNTLEHQPAKIAAIEGHWENPPGEATPLLLFGVPDMEEERTKYGLEIPALGSLILTHSLDKQVPALKDFPKDERPNSLIVFWSFRVMVGLGLLMILMGVVSLWLRHRHRLYHSRAFHWFALSMGPAGLVAILAGWITTEVGRQPWVVYGYLRTIDAVSLHSTLQMSISLLAFFVVYCSVFGVGYVYLVRLIKKGPQPTDNLSLNTDGRPARPLSAAEPVPEEEKP
>NZ_CP013990.1|WP_032613386.1|1117295_1118306_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MGVDISVIWFAIIVFATLMYIIMDGFDLGIGMLFYFERDPQARDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALTIPLTAMLIGLIFRGVAFEFRFKATPSHRGFWDISFAAGSLLATFSQGIVVGAMINGFDVEGRRFAGSALDWLTPFNLFCGLGLMVAYTLLGTTWLIMKSEGALQRHMRDLTRHVLLALLAVVAVVSIWTPLGWQFVADRWFSLPNFFYFLPVPILVAVCGVLIWRLTRNPHSHARPFLLTLGLIFLGFSGLGISLWPNIIPPGITIWDAAAPPSSQLFMLVGTLLIIPLILVYTAWSYYVFRGKVTDTEGYH
>NZ_CP013990.1|WP_032613395.1|1116088_1117075_+|SDR-family-oxidoreductase
MSVVVITGATAGVGKATALRFAAAGYDVGLIARDDHSLEATRAEVANYGVNCHAVSVDVVDATALSQAAQTLADQLGAIDVWINNAMCTTLAPFYSITDDEFRRVTEVTYLGCVNGTRAAMEQMIPRDSGVIIQVGSALAYRSIPLQSAYCGAKAAIRGFTDALRTELMHERSGVHLAMVQMPGLNTPQFDWARNKFAYSMRPVAPVFQPEVAAEAIYGVAQKPVRELWVGRSTIGAIVGQFLFPGLLDRMMVKNAWEGQMEEALNPPDRQDNLANPVGGEHRIHGHFSPEAKSRAAAITSGVPGKVLVGTAVVTGLVLIGKLIGRRK
>NZ_CP013990.1|WP_032613397.1|1115554_1116079_+|2-oxo-tetronate-isomerase
MKENIWNQAKTTKELTRQVSTVLTDLGWLLTTAESCTGGNVASALCAEKDTASFFGTGVVTFNNEAKHKVLGVSNATLEKYTAVSSQTVGEMAEGALKLADADVSIAISGYAGPDGGEDGTPAGTVWFGWCFRGEVTTAVQHFTGECEDVIEKAVRYALSELLRQVPHWKKQLH
>NZ_CP013990.1|WP_032613400.1|1115105_1115558_+|DUF421-domain-containing-protein
MEMILRAVAIYLILLVVFKIAGRRALLQMTSFDLILLLIISEATQQALLGDDFSVTGAMLTIITLVVIDMLFGLAKKYISGAESMFDGSPVILVVHGELQQEKLKKVDVSCDDILVSARQNHGIYQLEKIKYAILERNGHISIIPEESES
>NZ_CP013990.1|WP_059307349.1|1114583_1115096_+|hypothetical-protein
MAKVKESSPPLPGVKQNHTALQFEYDARRFGFVLLLLIIAAALAGVFSGGYFSDATKTNAAKSVQVKYQRFGRLQTPLELKITLPGQGTAPLTLRVGGEYMARTQTDNIWPQPDEMHSEGGELVLVYQEAKSRKDFNVWIYNTPDKPGKTVTTVTVNNQPGLSFWQFIYP
>NZ_CP013990.1|WP_032613403.1|1114048_1114441_-|YdeI-family-stress-tolerance-OB-fold-protein
MKLTVAPLLCCLLISTAYAEDNGGLKKDTAPPAPHSLDDGYRGAEDARIMTVEQAKEMHDGATISLRGNLIDGGEGDKFKFRDKTGTIDTVIPKAVFDGRTVQPDNMISINGSLDKKSTPPVVRVDRIQK
>NZ_CP013990.1|WP_032613388.1|1122569_1123088_+|hypothetical-protein
MIDFISGILIHTPFWVYLILLFLLSRGIKARKPATVTLEKLAIIPAIFLIWDIYDLLVFRTLTLATGSLWLVGLLSGAAMGYILIKRTAIARAAAPRSLYRAADYSALPFMMLAFAVKYVLGVMSAIAPEVLQRPGVSAFVIITGGLFAGVFVGKFVRYVRVYLAPEVQQVG
>NZ_CP013990.1|WP_032613374.1|1123234_1123921_-|RluA-family-pseudouridine-synthase
MSAIIDTFIAPPCHTPIETLWQDDHLVLINKPSGLLSLSGKNPQNLDSVHHRLVQTFPGCTLVHRLDFGTSGLMVIARNKAINAALCQQFSQRSVSKIYTALLCGHLADDDGVIDAPIAKDPALFPLMSICAISGKPARSRYRVIERFYHQENVPVTRVVLIPETGRTHQLRIHCQQLGHPILGCDLYGGLLPPGTEKTPRLMLHASELHFVHPISGEPMVVRSASPF
>NZ_CP013990.1|WP_059307350.1|1124042_1124528_-|DMT-family-transporter
MTLIMIILAVIGGATLSIQAAINGQLGSSVGVFKSAFLTFSVGALITALLIFFFEPKQAVTLLDVPKWQLLGAMFGVPYIVIMVFAVQRIGTAVATVAVIFGQLTMSMLIDNFGWLGNAAIPFSMSRLGAILCLGIALFFIYSSSRTPETADEPATETVRD
>NZ_CP013990.1|WP_032613369.1|1124537_1124972_-|DMT-family-transporter
MQLILILFVIAGGMGLSVEAGLLGPLGGEVGDLWATFSVFGVGAALTFLLMLFFSPRNSPSFFAQPSWQLLGGVLGPVYVIILTIATPAIGIAMTMIGILAGQVFKSLIIDHYGLLGTPHRKIDSKRIIALGFIIAALVLVAQG
>NZ_CP013990.1|WP_059307351.1|1125072_1126029_+|LysR-family-transcriptional-regulator
MYDATNITIRWLLIFTAVYETQNFSVVARREGISASQVSRIIHQLEDALGQQLFYRNTRAIIPTESGHLFIRFARQMLGNLDDARRELDERKREPSGVVRINAPVFFGQRHIAPGLPGLTERYPRLSIELTLTDDYIDPHRDAADVIFRIGALTDSTFHARVLGQQFYHLAASPAYLRKYGAPETPDDIVQHKCLIYRGSSGPNRWLLRRPGEAWTHYPVSPLMSSNNAETLLIAALGGMGIVLFPDWLIGDRFHSGELVKLLPEWETSINTEPLNIAAIYPHTRHPPLNVRAVIDHYVKAFGSPLYWQSAVNEPLKE
>NZ_CP013990.1|WP_059307352.1|1126032_1126821_+|phosphotransferase
MSDNNLSRMGTAKVTLIRDEEGRRVIEKSPVSEVEYAFYHAAAPRLRQVGVASPALLSADAPRRRLRLEYIPHPVDQEGVAGDEVLSMLARLHGYPPDPSWTRHPHGWSAAALEASLGLLALPERAVQQMRCFHQHSEALFRHPGLISGDSNAGNWGRRDNGEWVLFDWERFGTGSPAIDLAPLIKGMGTPQAFKAMADRYRLIAGYSDGRDLTKEIAIAKAWIVTEVVLLLHARQKSDYPRYLSWYREHLPGWLASTVNLL
>NZ_CP013990.1|WP_032613362.1|1126842_1127427_+|hypothetical-protein
MRQLSLLLCLLLLTGCVVNAPQKAQFNAEYPNRQDIRHHAVYRFMTKPLKPGGGKDYGANDLAETLRARADNAAMVELRFNYPARRLQVKTLDAQNSTLREVTYVLLDESAAKPSGSDSRYFFLTKEGVLLTKYKNCTPDMSVGCRWHDRMLFITRNGDMAVQFASGTAGMAFLVIPFYGSEKHLTIYPKATGV
>NZ_CP013990.1|WP_032613360.1|1127730_1128123_+|hypothetical-protein
MFLSWWLIVPVVIGIAILFIMVSRLSNEVDKLETALQESRGQLKSLGQQADEFKLANLRMTENVLRVKACAQSLQNSNGAEQERVLYEMTCALNLATSHVMNHPDFIAPRAAPETAFAQKVNESLPLMFR
>NZ_CP013990.1|WP_098946302.1|1128758_1129928_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MDDLDNALGSESGYTGARSIVLISLLLFVIAGVWAWYSILDEVSTGTGKVIPSSREQVLQSLDGGILAELKVHEGDQVQAGQVLARLDPTRSESNVGESAARYRASLASSARLHAEVNDQPLVFPPELAKWTDLIAAETRLYNSRREQLEDSRRELRQALELVNTELGITQRLVKTGAASHVEALRLQRQKSDLELKLTDLRSQYYVQAREALSKSNAEVDMLSAVLKGREDSVTRLTMTSPVRGIVKNIKVTTIGGVIPPNGEMMEIVPVDDHLLIETRLSPRDIAFIHPGQKALVKITAYDYAIYGGLDGVVETISPDTIQDEAKPEVFYYRVFIRTSQDYLVNKAGRHFSIVPGMIATVDIKTGEKSVMDYMIKPFNRAKEALRER
>NZ_CP013990.1|WP_059307353.1|1129938_1132131_-|type-I-secretion-system-permease/ATPase
MKQDDILHEAPLTQEALEHWAQAFGYVATRYRVACSPGALVAGAPWLQGKSKTPALTGLAREAGLSFKLLNNGQESINSWRLPVVVELNDGKIGVIEHFDGEDMLDVCFFDGKAQTNRISLAKMLPAIHQVVALRPLAALKDSRVDAYISKYRPDWLYRLVMRDLRPYTYVMLAALFINLLSLAGILFSMQVYDRVIPAQSYPTLYVLTIGVLIATLFGFILRLARSHIMDLLGKRADLRVSDRVFGHALRLRNSAVPRSTGSFISQLRELEQIREMVTSSTISTIVDLPFFFLFVGVLAIIAPQLAWIAPVAAVLMVLPGLLLQKKLASLAKQAAHESTLRNAVLVESVQGLEDIKLMQAENRFLQQWNSYVQITAESGLKTRELTQGLISWGMTIQSLVYTAVIVVGAPMVIEGEMTTGAVVAASMLASRMIAPMATLCGVLARWQQVKAAKEGLDNIMQLPTENQREETPIRQDVLRGHYLFEQAQFAYGGDVQNPALRINRLEIKPGEHVAILGRNGAGKSTLLQAMVGSMDLVGGELRLDNLSLPHLDMADVRRNVGLMSQNARLFYGTLRENITLGMPRATDDEIFAVLEMCGAAAFVQKLAKGLDHQIMENGVGLSGGQRQSILLARMFLRDPNIVLLDEPTASLDEHTEREFIQRLSQWLGNRTLIVATHRVPMLELVERVVVLKEGMLVMDAPKAQALSNSRMQQQQQANGREWKNENQSA

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Crispr_ID: NZ_CP013990_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013990_5

1476054-1476172

Orphan

Consensus_repeat	Method
AAAAAACCCGCCTCAGCGGGTTTTTTTATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013990_5

>merge|NZ_CP013990|5|1476054-1476172|CRISPRCasFinder
AAAAAACCCGCCTCAGCGGGTTTTTTTATGGTCTTCTCCCTCTCTTCGTGGGAGAGGGCCGGGGTGAGGGCACCAGCCCGCACTGAACGAAAAAACCCGCCTCAGCGGGTTTTTTTATG

>NZ_CP013990|5|5|1476054-1476172|CRISPRCasFinder
AAAAAACCCGCCTCAGCGGGTTTTTTTATG	GTCTTCTCCCTCTCTTCGTGGGAGAGGGCCGGGGTGAGGGCACCAGCCCGCACTGAACG
AAAAAACCCGCCTCAGCGGGTTTTTTTATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013990.1\|WP_032612751.1\|1479219_1480515_+\|isochorismate-synthase-MenF	unknown	unknown	gnl\|CDD\|184974
NZ_CP013990.1\|WP_059307479.1\|1482270_1483047_+\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|236855
NZ_CP013990.1\|WP_032612766.1\|1474586_1476044_+\|NADH-quinone-oxidoreductase-subunit-NuoN	unknown	unknown	gnl\|CDD\|235603
NZ_CP013990.1\|WP_032612773.1\|1470834_1471137_+\|NADH-quinone-oxidoreductase-subunit-NuoK	unknown	unknown	gnl\|CDD\|180218
NZ_CP013990.1\|WP_032612779.1\|1466015_1468742_+\|NADH-quinone-oxidoreductase-subunit-NuoG	unknown	unknown	gnl\|CDD\|236170
NZ_CP013990.1\|WP_032612781.1\|1464532_1465870_+\|NADH-quinone-oxidoreductase-subunit-NuoF	unknown	unknown	gnl\|CDD\|236891
NZ_CP013990.1\|WP_032612753.1\|1478817_1479123_+\|stress-response-protein-ElaB	unknown	unknown	gnl\|CDD\|182432
NZ_CP013990.1\|WP_059307476.1\|1477302_1478220_-\|ribonuclease-Z	unknown	unknown	gnl\|CDD\|131697
NZ_CP013990.1\|WP_059307481.1\|1483900_1484866_+\|o-succinylbenzoate-synthase	unknown	unknown	gnl\|CDD\|235345
NZ_CP013990.1\|WP_059307478.1\|1480603_1482274_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|236020
NZ_CP013990.1\|WP_059307477.1\|1478293_1478755_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182373
NZ_CP013990.1\|WP_059307474.1\|1471133_1472975_+\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|235836
NZ_CP013990.1\|WP_032612777.1\|1468738_1469716_+\|NADH-quinone-oxidoreductase-subunit-NuoH	unknown	unknown	gnl\|CDD\|235692
NZ_CP013990.1\|WP_059307480.1\|1483043_1483901_+\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
NZ_CP013990.1\|WP_032612768.1\|1473050_1474580_+\|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|235622
NZ_CP013990.1\|WP_032612775.1\|1470283_1470838_+\|NADH-quinone-oxidoreductase-subunit-J	unknown	unknown	gnl\|CDD\|235844
NZ_CP013990.1\|WP_003861491.1\|1469729_1470272_+\|NADH-quinone-oxidoreductase-subunit-NuoI	unknown	unknown	gnl\|CDD\|235637
NZ_CP013990.1\|WP_059307475.1\|1476231_1477236_-\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|223905
NZ_CP013990.1\|WP_059307482.1\|1484862_1486224_+\|o-succinylbenzoate--CoA-ligase	unknown	unknown	gnl\|CDD\|236363
NZ_CP013990.1\|WP_014071107.1\|1464035_1464536_+\|NADH-quinone-oxidoreductase-subunit-NuoE	unknown	unknown	gnl\|CDD\|181024

Protein	Function_ID	Function_description	E-value
NZ_CP013990.1\|WP_032612751.1\|1479219_1480515_+\|isochorismate-synthase-MenF	gnl\|CDD\|184974	PRK15012, PRK15012, menaquinone-specific isochorismate synthase; Provisional.	0
NZ_CP013990.1\|WP_059307479.1\|1482270_1483047_+\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	gnl\|CDD\|236855	PRK11126, PRK11126, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional.	6.10694e-139
NZ_CP013990.1\|WP_032612766.1\|1474586_1476044_+\|NADH-quinone-oxidoreductase-subunit-NuoN	gnl\|CDD\|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	3.22659e-171
NZ_CP013990.1\|WP_032612773.1\|1470834_1471137_+\|NADH-quinone-oxidoreductase-subunit-NuoK	gnl\|CDD\|180218	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK.	3.6637e-41
NZ_CP013990.1\|WP_032612779.1\|1466015_1468742_+\|NADH-quinone-oxidoreductase-subunit-NuoG	gnl\|CDD\|236170	PRK08166, PRK08166, NADH-quinone oxidoreductase subunit NuoG.	0
NZ_CP013990.1\|WP_032612781.1\|1464532_1465870_+\|NADH-quinone-oxidoreductase-subunit-NuoF	gnl\|CDD\|236891	PRK11278, PRK11278, NADH-quinone oxidoreductase subunit NuoF.	0
NZ_CP013990.1\|WP_032612753.1\|1478817_1479123_+\|stress-response-protein-ElaB	gnl\|CDD\|182432	PRK10404, PRK10404, stress response protein ElaB.	3.38602e-59
NZ_CP013990.1\|WP_059307476.1\|1477302_1478220_-\|ribonuclease-Z	gnl\|CDD\|131697	TIGR02649, Ribonuclease_BN, ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN. [Transcription, RNA processing].	7.49277e-174
NZ_CP013990.1\|WP_059307481.1\|1483900_1484866_+\|o-succinylbenzoate-synthase	gnl\|CDD\|235345	PRK05105, PRK05105, O-succinylbenzoate synthase; Provisional.	0
NZ_CP013990.1\|WP_059307478.1\|1480603_1482274_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|236020	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated.	0
NZ_CP013990.1\|WP_059307477.1\|1478293_1478755_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182373	PRK10314, PRK10314, GNAT family N-acetyltransferase.	4.35082e-103
NZ_CP013990.1\|WP_059307474.1\|1471133_1472975_+\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	0
NZ_CP013990.1\|WP_032612777.1\|1468738_1469716_+\|NADH-quinone-oxidoreductase-subunit-NuoH	gnl\|CDD\|235692	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH.	1.06542e-167
NZ_CP013990.1\|WP_059307480.1\|1483043_1483901_+\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
NZ_CP013990.1\|WP_032612768.1\|1473050_1474580_+\|NADH-quinone-oxidoreductase-subunit-M	gnl\|CDD\|235622	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed.	0
NZ_CP013990.1\|WP_032612775.1\|1470283_1470838_+\|NADH-quinone-oxidoreductase-subunit-J	gnl\|CDD\|235844	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J.	2.01649e-61
NZ_CP013990.1\|WP_003861491.1\|1469729_1470272_+\|NADH-quinone-oxidoreductase-subunit-NuoI	gnl\|CDD\|235637	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI.	7.34251e-77
NZ_CP013990.1\|WP_059307475.1\|1476231_1477236_-\|chemotaxis-protein-CheV	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	2.24294e-36
NZ_CP013990.1\|WP_059307482.1\|1484862_1486224_+\|o-succinylbenzoate--CoA-ligase	gnl\|CDD\|236363	PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional.	0
NZ_CP013990.1\|WP_014071107.1\|1464035_1464536_+\|NADH-quinone-oxidoreductase-subunit-NuoE	gnl\|CDD\|181024	PRK07539, PRK07539, NADH-quinone oxidoreductase subunit NuoE.	2.40448e-97

>NZ_CP013990.1|WP_032612766.1|1474586_1476044_+|NADH-quinone-oxidoreductase-subunit-NuoN
MTITPQQLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLAVLGLNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNREEFYLLVLIAALGGILLANANHLAALFLGIELISLPLFGLIGYAFRQKRSLEASIKYTILSAAASSFLLFGIALIYAQSGNLSFEALGKSLGDGMLHEPLLLAGLGMMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGESEAVRVVLGIIAFVSIIFGNLMALSQTNIKRLLGYSSISHLGYLMVALIALQSGQMSMETVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILSAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAGLWWLTAGVVIGSAIGLYYYLRVAVSLYLSAPQQLNRDAPGNWQYSAGGIVVLISALLVLIFGIYPQPLITIVQHAMPLM
>NZ_CP013990.1|WP_032612768.1|1473050_1474580_+|NADH-quinone-oxidoreductase-subunit-M
MLLPWLILIPFIGGFLCWQTERFGVKMPRWIALITMGLTLALGLQLWLQGGYSLTQSAGIPQWQSEFILPWIPRFGITIHLAIDGLSLLMVVLTGLLGVLAVLCSWREIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYQDLLKTPMSHGVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPNASAEFAPIAMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERLHTRDMRQMGGLWGKMKWLPAMSMFFAVATLGMPGTGNFVGEFMILFGSFKVVPMITVISTFGLVFASVYSLAMLHRAYFGKAKSEIAAKELPGMSLRELFIILLLVVLLVLLGFYPQPILDTSHSAMGNIQQWFVNSASTTRP
>NZ_CP013990.1|WP_059307474.1|1471133_1472975_+|NADH-quinone-oxidoreductase-subunit-L
MNMLALTIIFPLIGFLLLAFSRGRWSENLSATVGIGSIGLAALVTAYAGIDFFSNGRQPHSVPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMFASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFEAGNNMLWWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEILHLVGIVGAVTLVLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLSSGSVILACHHEQNIFKMGGLRKSIPLVYVCFLVGGAALAALPLITAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAGKGITHHLPLIVLLVLSTFVGAMIVPPLQGVLPDTTELEHGRVLTLEITSGVVAIAGILIAAWLWLGKRTLVTAVANSAPGRLLGTWWYNAWGFDWLYDMIFVKPFLGIAWLIKRDPLNSLMNTPAILSRFAGKGLLFSENGYLRWYVASMSIGAVVVLALLMVLR
>NZ_CP013990.1|WP_032612773.1|1470834_1471137_+|NADH-quinone-oxidoreductase-subunit-NuoK
MIPLQHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINAAALAFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSELRG
>NZ_CP013990.1|WP_032612775.1|1470283_1470838_+|NADH-quinone-oxidoreductase-subunit-J
MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFFALGAHFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAIMLAVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREERSGEVLSNRKDDSAKRKTEERA
>NZ_CP013990.1|WP_003861491.1|1469729_1470272_+|NADH-quinone-oxidoreductase-subunit-NuoI
MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGSERCVACNLCAVACPVGCISLQKAETVDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFELGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDGKDKGEAENEAKPIDVKSLLP
>NZ_CP013990.1|WP_032612777.1|1468738_1469716_+|NADH-quinone-oxidoreductase-subunit-NuoH
MSWLTPDLIDILLNILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFSDRVIFTLAPMIAFTSLLLAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFNMTDIVNNQADIWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVTISALMVTLFFGGWHGPFLPPFIWFALKTAFFMMMFILIRAALPRPRYDQVMSFGWKVCLPLTLVNLLVTAAVILWQQP
>NZ_CP013990.1|WP_032612779.1|1466015_1468742_+|NADH-quinone-oxidoreductase-subunit-NuoG
MATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYQNAEDTRGRLVMSCMTPAAEGTFISIDDAEAKQFRESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGEDLGVYGAHDNVYFGRPEDGVLESEFSGNLVEICPTGVFTDKTHSERYNRKWDMQFAPSICQQCSLGCNTSPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLKDRPRQPVQRRGDDVITLNAEQAMQGAADILRQSKKVIGIGSPRASIESNFALRELVGAENFYTGIAKGEQERLQLVLKVLREGGIHTPALREIESYDAVLVLGEDLTQTGARAALAVRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDNTRLDDIAAWTYRAPVEDQARLGFAIAHALDNSAPAVEGLDRDLQNKVDVIVQALAGAKKPLIISGTNAGSTEIIEAAANVAKALKGRGADVGVTMIARAVNSIGLGMIGGGSLEEALSELESGAADAVVVLENDLHRHASAARVDAALSKAPLVMVIDHQRTAIMDKAHLVLSAASFAESDGTVVNNEGRAQRFFQVYDPAYYDNSIVMLESWRWLHSLHSTVLSREVDWTQLDHVIDAAVAQLPQLAGIKDAAPEASFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDKDTMFAFSMEGNNQPSAPRSQIPFAWAPGWNSPQAWNKFQAEVGGSLRHGDPGVRLIEASETGLAFFSTVPASFQAEEGNWRIAPYYHLFGSDELSQRSPVFQTRMPQPYIKLNPADAAKLGVNAGANISFSYEGQTISLPLIISEGLTAGQVGLPMGMPGIAPVLAGARLDNLQEAKA
>NZ_CP013990.1|WP_032612781.1|1464532_1465870_+|NADH-quinone-oxidoreductase-subunit-NuoF
MKTVIRTAETHPLTWRLRDDKQPVWLEEYQSKNGYAGARKALGGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAENLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGISSSKDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRAIERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIKQPFSNTHSINGIQPNLLKARW
>NZ_CP013990.1|WP_014071107.1|1464035_1464536_+|NADH-quinone-oxidoreductase-subunit-NuoE
MHENQQPQTEAFELSEAERAAIEHEMHHYEDPRAASIEALKIVQKQRGWVPDGAIYEIAKVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHITGYQGIQAAIEKKLDIKPGQTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK
>NZ_CP013990.1|WP_059307475.1|1476231_1477236_-|chemotaxis-protein-CheV
MDNFQKDIDDRANLTLSNRFELLLFRLGTSMNENKSELFGINVFKLREIVPMPAFTKPAGMKSPLMGMVNIRDQVIPVIDLAAVAGCKPATGLNILLITEYARSVQAFAVESVENIMRLDWKQVHAAETAVSGRYITSIACLDEKTDTNDLAMVLDVEQILYDITPANHDLHATDLKTTQFNIKPGAVAIVAEDSKVARSMLEKGLQAMAIPALMHITGKEAWEKIGVLAAQAQAEGVPITDKIALVLTDLEMPEMDGFTLTRKIKTDAILKDIPVVIHSSLSGNANEDHIRKVKADGYVAKFELNELSSVIEEVLERSTKKIDGPLISRKQLA
>NZ_CP013990.1|WP_059307476.1|1477302_1478220_-|ribonuclease-Z
MELLFLGTSAGVPTRTRNVTSILLDLQHPTRGGLWMFDCGEGTQHQLLQTASHPGKLDKIFITHLHGDHLFGLPGLLCSRSMAGNLHPLTIYGPPGIREFVETSLRISGSWTDYPLEIVEISAGVVFSDDAWTVTAAALNHPVECYGYRIEEQDKPGALDGAALIAAGVPFGPLFQQLKRGERITLDDGRTIDGADYLSPPRPGKKLAIFGDTAPCENALALARGVDLLVHEATLESAMEEKANSRGHSSTRQAAMLAREAQVKKLVITHVSSRYDAGGCAMLLTECRDLFADSQLAEDFAVVRV
>NZ_CP013990.1|WP_059307477.1|1478293_1478755_+|GNAT-family-N-acetyltransferase
MIQWQDLHHSELTVPVLYALLKLRCEVFVVEQTCPYQDIDGDDLVGENRHILGWKDNQLVAYARILKSDDDFSPVVIGRVIISQQARGEKLGYALMEHTLHSCEKQSPNKALYLGAQAHLQAFYARFGFVPVTDIYDEDGIPHIGMAKEAEQA
>NZ_CP013990.1|WP_032612753.1|1478817_1479123_+|stress-response-protein-ElaB
MSFQSSESHVDDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALHDVKTRVSHASDTYYYRAKKAVYRADDYVREKPWQGIGVGAAAGLVLGLLLARR
>NZ_CP013990.1|WP_032612751.1|1479219_1480515_+|isochorismate-synthase-MenF
MHSISTALAGLCHQLADDIPDVPGLHHLDVSFALNDAFDPLAWLNAQHCFPQFYWQQRNGDEEYAALGATKHFASLSDARHFLHCYPQCPDVRVVGVNAFDPHQGNLFLPRLLWQRSGGAATLRLILCSATSLKNDAQHAHEFLRSLRDSQPVKALNQPVVSETHRPEKSGWLTLITRATDAIARGEFDKVVLARATDLHFNLPVNPVALIAASRRVNFQCYHFLMRPDATQAFLGSSPERLWRRRGTLLRTEALAGTVASHPDDTQAARMGDWLMHDDKNQRENMLVVEDICQRLQRDGGVLDVLPPQIVRLRKVQHLRRCIWTALQQPDDEECLMRLQPTAAVAGLPRQNAWDFIARNEPFDREWYAGSAGYLSLAQSEFCVALRSARVQETCVRLYAGAGIVSGSDPEQEWQEIENKAAGLRSLLLKD
>NZ_CP013990.1|WP_059307478.1|1480603_1482274_+|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MSVSSFNRRWAAVILEALTRHGVRHVCIAPGSRSTPLTLAAAENRAFIHHTHFDERGLGHLALGLAKASNTPVAVIVTSGTAVANLYPALIEAGLTGEKLVLLTADRPPELIDCGANQAIRQPCLFASHPSETLSLPRPTRDIPARWLVSTVDNAMGALRAGALHINCPFAEPLYGEMDDTDLAWHQALGDWWQSDKPWLRAPAALSSPEQRDWFFWRQKRGVVLAGRMSAAEGKKVAEWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKAVTELEQAQIVVQLGGSLTGKRLLQWQATCTPEEYWLVDPREGRLDPAHHRGRRLVSNVADWLELHPAEKRGPWATAIPELSRQAWQLTAQHSEAFGEAQLAHRIRHYLPEQGQLFVGNSLVVRLIDAFSRLPAGYPVFSNRGASGIDGLISTAAGVQRANARPTLAIVGDLSALYDLNALALLRQASAPFVLLVINNNGGQIFSLLPTPQSERERFYLMPQNVQFEHAAAMFSLRYQRPTSWGALESALNTAWSKPRATLIEVVVNDSDGAQMLQNLLAQVSHL
>NZ_CP013990.1|WP_059307479.1|1482270_1483047_+|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase
MILQGTHCTGAAGKPWLVFLHGFSGDRREWQLPEACLGDYPRLYLDLPGHGESAHVAVHDFNDMHTLLNRTLLSYNILTYWLVGYSLGGRIAMYHACQRPKGLQGLIVEGAHPGLRDDDERARRRASDAHWAARFRHEPLEAVFADWYQQPVFASLTDAQRRALVALRSRNNGATLAAMLQATSLAEQPDLRAALAECAVPFFYLYGERDDKFRAIARELPAIGHQISHAGHNAHRENPVAVAERLAQILRLSIKDTL
>NZ_CP013990.1|WP_059307480.1|1483043_1483901_+|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MIYPDENMLYAPVEWQDCSEGYTDIRYHKSADGIAKITINRPEVRNAFRPVTVKEMIQALADARYDDNIGVIVLTGEGEKAFCSGGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAAENAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYNAQEALDMGLVNTVVPIADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNEKRQPDFSKYKRNP
>NZ_CP013990.1|WP_059307481.1|1483900_1484866_+|o-succinylbenzoate-synthase
MRSVQIYRWQVPMDAGVVLRERRLKTRDGLFVHLQQGDRQGWGEISPLPGFSRESLEEAEASLRAWCLAWRDGADPQLPGLPAVDFGISCALTELDGTLPQKADYRAAPLCTGDPDELFAVLAAMPGEKVAKIKVGLYEAVRDGMVANLLLEAIPDLRLRLDANRAWTPLKAQQFAKYVNPTYRDRIAFLEEPCKTRADSLAFARETGIAIAWDESLREDDFAFVAEPGVSAVVIKPTLTGSLEKVRQQVSAAQAAGLTAVISSSIESSLGLTQLARIAAWLTPDTVPGLDTLNLMQAQLIRSWPDSTLPQLDVEALEPLL
>NZ_CP013990.1|WP_059307482.1|1484862_1486224_+|o-succinylbenzoate--CoA-ligase
MSFTDWPWRHWCARQADKPALRLNEETLTWQQLCDHVDRLATGFHRQGVQEGDGVMLLAHNHPHTLLAWLALLQCGARILPVNPQLPRPLLDVLLPQMTLRFALVLTGVFDGLPGLALRDDKGHYSVAWQPERLASMTLTSGSTGLPKAAVHTCSAHLASAQGVLALMPFSGNDDWLLSLPLFHVSGQGILWRWLHAGARLTVREKQPLEQALQGCTHASLVPTQLWRLINGEHRVALKAVLLGGAAIPVALTEKAREQGIRTFCGYGLTEFASTVCAKEADGEPDVGVPLPGREIQVVEGEVWIKARSMAAGYWRDGALLPLTNAQGWFATRDRGALCDGRLTILGRMDNLFFSGGEGIQPEELERVIGTHPQVNQVYVVPFDDVEFGQRPVAVVECEAGTDIAQLPHWVSDKLARFQQPVHWLMLPAELKNGGIKIARRALQQWVHQSLRG

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Crispr_ID: NZ_CP013990_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013990_6

3530535-3530652

Orphan

Consensus_repeat	Method
CCGGTGCAGGTGGTGAGATAAAAAAGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013990_6

>merge|NZ_CP013990|6|3530535-3530652|CRISPRCasFinder
CCGGTGCAGGTGGTGAGATAAAAAAGAGGGCCACGCAACCCGTCCCTCTCCACCCACCGGCCTGGCGCCAACACCGCCACGCTTACAGTCCGGTGCAGGCGGTGAGATAAAAAAGAGG

>NZ_CP013990|6|6|3530535-3530652|CRISPRCasFinder
CCGGTGCAGGTGGTGAGATAAAAAAGAGG	GCCACGCAACCCGTCCCTCTCCACCCACCGGCCTGGCGCCAACACCGCCACGCTTACAGT
CCGGTGCAGGCGGTGAGATAAAAAAGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013990.1\|WP_032617018.1\|3522295_3522679_+\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|184564
NZ_CP013990.1\|WP_059308523.1\|3528077_3528488_+\|nucleoside-diphosphate-kinase-regulator	unknown	unknown	gnl\|CDD\|180236
NZ_CP013990.1\|WP_032617007.1\|3533892_3534789_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP013990.1\|WP_032617017.1\|3523298_3523874_-\|lipid-IV(A)-palmitoyltransferase-PagP	unknown	unknown	gnl\|CDD\|236829
NZ_CP013990.1\|WP_059308530.1\|3539703_3540903_+\|S-methyl-5-thioribose-kinase	unknown	unknown	gnl\|CDD\|236561
NZ_CP013990.1\|WP_059308520.1\|3521440_3522229_-\|deaminated-glutathione-amidase	unknown	unknown	gnl\|CDD\|143605
NZ_CP013990.1\|WP_059308528.1\|3537436_3537979_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|224704
NZ_CP013990.1\|WP_032617010.1\|3530024_3530453_+\|universal-stress-protein-UspG	unknown	unknown	gnl\|CDD\|185353
NZ_CP013990.1\|WP_032617008.1\|3532575_3533139_-\|alkyl-hydroperoxide-reductase-subunit-C	unknown	unknown	gnl\|CDD\|182423
NZ_CP013990.1\|WP_059308527.1\|3536750_3537440_+\|acireductone-synthase	unknown	unknown	gnl\|CDD\|319768
NZ_CP013990.1\|WP_059308521.1\|3526230_3527040_+\|ribonuclease-I	unknown	unknown	gnl\|CDD\|236650
NZ_CP013990.1\|WP_059308526.1\|3536139_3536754_+\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|236415
NZ_CP013990.1\|WP_002439184.1\|3522898_3523108_-\|transcription-antiterminator/RNA-stability-regulator-CspE	unknown	unknown	gnl\|CDD\|169931
NZ_CP013990.1\|WP_059308525.1\|3534857_3536018_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181642
NZ_CP013990.1\|WP_032617000.1\|3540971_3542213_-\|LVIVD-repeat-containing-protein	unknown	unknown	gnl\|CDD\|227601
NZ_CP013990.1\|WP_032617015.1\|3524768_3526142_+\|anaerobic-C4-dicarboxylate-transporter-DcuC	unknown	unknown	gnl\|CDD\|182621
NZ_CP013990.1\|WP_032617011.1\|3528560_3529799_-\|glutathione-dependent-formaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|176243
NZ_CP013990.1\|WP_059308529.1\|3538569_3539598_-\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273112
NZ_CP013990.1\|WP_059308522.1\|3527047_3527668_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
NZ_CP013990.1\|WP_059308524.1\|3530698_3532261_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942

Protein	Function_ID	Function_description	E-value
NZ_CP013990.1\|WP_032617018.1\|3522295_3522679_+\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|184564	PRK14196, PRK14196, fluoride efflux transporter CrcB.	9.46342e-61
NZ_CP013990.1\|WP_059308523.1\|3528077_3528488_+\|nucleoside-diphosphate-kinase-regulator	gnl\|CDD\|180236	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional.	2.88764e-77
NZ_CP013990.1\|WP_032617007.1\|3533892_3534789_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.58951e-42
NZ_CP013990.1\|WP_032617017.1\|3523298_3523874_-\|lipid-IV(A)-palmitoyltransferase-PagP	gnl\|CDD\|236829	PRK11045, pagP, lipid IV(A) palmitoyltransferase PagP.	1.26563e-107
NZ_CP013990.1\|WP_059308530.1\|3539703_3540903_+\|S-methyl-5-thioribose-kinase	gnl\|CDD\|236561	PRK09550, mtnK, methylthioribose kinase; Reviewed.	0
NZ_CP013990.1\|WP_059308520.1\|3521440_3522229_-\|deaminated-glutathione-amidase	gnl\|CDD\|143605	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	3.27509e-113
NZ_CP013990.1\|WP_059308528.1\|3537436_3537979_+\|cupin-domain-containing-protein	gnl\|CDD\|224704	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown].	5.3781e-64
NZ_CP013990.1\|WP_032617010.1\|3530024_3530453_+\|universal-stress-protein-UspG	gnl\|CDD\|185353	PRK15456, PRK15456, universal stress protein UspG; Provisional.	1.9907e-85
NZ_CP013990.1\|WP_032617008.1\|3532575_3533139_-\|alkyl-hydroperoxide-reductase-subunit-C	gnl\|CDD\|182423	PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional.	3.30629e-141
NZ_CP013990.1\|WP_059308527.1\|3536750_3537440_+\|acireductone-synthase	gnl\|CDD\|319768	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv. Oryzae enolase-phosphatase Xep. Enolase-phosphatase E1 (also called MASA) is a bifunctional enolase- phosphatase which promotes the conversion of 2,3-diketo-5-methylthio-1-phosphopentane to 1,2-dihydroxy-3-keto-5-methylthiopentene anion (an aci-reductone) in the methionine salvage pathway. The catalytic reaction is carried out continuously by enolization and dephosphorylation, and the enolase activity cannot be classified as typical enzymatic enolization. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.40078e-115
NZ_CP013990.1\|WP_059308521.1\|3526230_3527040_+\|ribonuclease-I	gnl\|CDD\|236650	PRK10095, PRK10095, ribonuclease I; Provisional.	0
NZ_CP013990.1\|WP_059308526.1\|3536139_3536754_+\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|236415	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase.	8.6678e-141
NZ_CP013990.1\|WP_002439184.1\|3522898_3523108_-\|transcription-antiterminator/RNA-stability-regulator-CspE	gnl\|CDD\|169931	PRK09507, cspE, cold shock-like protein CspE.	4.89843e-40
NZ_CP013990.1\|WP_059308525.1\|3534857_3536018_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181642	PRK09082, PRK09082, methionine aminotransferase; Validated.	0
NZ_CP013990.1\|WP_032617000.1\|3540971_3542213_-\|LVIVD-repeat-containing-protein	gnl\|CDD\|227601	COG5276, COG5276, Uncharacterized conserved protein [Function unknown].	3.70923e-155
NZ_CP013990.1\|WP_032617015.1\|3524768_3526142_+\|anaerobic-C4-dicarboxylate-transporter-DcuC	gnl\|CDD\|182621	PRK10654, dcuC, C4-dicarboxylate transporter DcuC; Provisional.	0
NZ_CP013990.1\|WP_032617011.1\|3528560_3529799_-\|glutathione-dependent-formaldehyde-dehydrogenase	gnl\|CDD\|176243	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
NZ_CP013990.1\|WP_059308529.1\|3538569_3539598_-\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|273112	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family].	3.39511e-150
NZ_CP013990.1\|WP_059308522.1\|3527047_3527668_-\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	3.81043e-41
NZ_CP013990.1\|WP_059308524.1\|3530698_3532261_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0

>NZ_CP013990.1|WP_032617010.1|3530024_3530453_+|universal-stress-protein-UspG
MYQTIIMPVDVFEMELSDKAIRHAEFLAQQDGIIHLLHVLPGSSSFGLHRFAADMRRFEDHIQHEAQTRLKTMVSHFSIDPSRIRTHVSFGNVRDVVNEVASELKADIVVIGSRNPSISTHLLGSNASSVIRHAYIPVLVVR
>NZ_CP013990.1|WP_032617011.1|3528560_3529799_-|glutathione-dependent-formaldehyde-dehydrogenase
MKALTYHGPHSVKVETVPDPAIEQADDIILRITATAICGSDLHLYRGKIPKVEHGDIFGHEFMGEVVETGRDVKNLAKGDRVVIPFVIACGDCFFCRMQQYAACESTNTGRGATLNKKQIPPPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPVLSDDKALFLSDILPTAWQAAKNAQITQGSSVAVFGAGPVGLLTVACARYLGAEQIFIVDHHDYRLRFAQDRYGAIPINFDRDDDAAEKIIEQTRGQRGVDAVIDAVGFEAKGSTTETVLTNLKLEGSSGKALRQCIAAVRRGGIVSVPGVYAGFIHGFLFGDAFDKGLTFKMGQTNVHAWLGELLPLIEQGLLKPEEIVTHYMPFEEAARGYEIFEKRQEDCRKIILVPGAQSAEVAKERVTGLVNPVPGGVI
>NZ_CP013990.1|WP_059308523.1|3528077_3528488_+|nucleoside-diphosphate-kinase-regulator
MSRPTIIINELDAERIDRLLEQPAFASLPIASALNDELDRAQMCAPQDMPANVVTMNSQVKFRDLTTGEVRTRTLVYPAQMTDSSTQLSVMAPVGAALIGLRTGDTIHWELPGGTATHLEVLELIWQPEAAGEYLR
>NZ_CP013990.1|WP_059308522.1|3527047_3527668_-|flavin-reductase-family-protein
MYFYQPSQGHGLPHDPLNAIVGPRPIGWIASCDTEGRPNLAPYSFFNCFNYHPPIIGFASTGWKDSVRNIVETGEFVWNLTTRELASAMNETSASLPHGEDEFLRAGLTKAESRVVKVPRVAQSPVNFECRLSQCIQLTAANGDSIDTWLVLGEVVGIHIDESLLQDGIYQTAKAQPVLRAGGPTAYFAIGEDQRFDLVRPDARKG
>NZ_CP013990.1|WP_059308521.1|3526230_3527040_+|ribonuclease-I
MFRKDLVLPASATAVVLCAFAAQAAPLQATQYADFDRYVLALSWQSGFCQSLHDRNRDAPDECRLQKERDDKTTILTVHGLWPGLPKSIAARGVDDRRWMRYGCATRPVPNMPEAKASRKCDAAETGLSLTGAAKLNEVMPGAGGNSCLERYEYAKHGVCFGFDPDAYFSTMVRMNQEVKASPLGQFLAANYGKTVSRSAFDAAVAKSWGPETVKAVKLSCSGKPAYLTEVQLTLTAASINAPLATPSFIAQPHPGNCGKQFVIDKIGY
>NZ_CP013990.1|WP_032617015.1|3524768_3526142_+|anaerobic-C4-dicarboxylate-transporter-DcuC
MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLVLLIVSALMGHKVLPSSATSTGYTATDIVEYIKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMVVKLASKPLSYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRGAAAAICASPAAIILSPTSGDVVLAAKAAEMPLIDFAFKTTLPISIAAILGMAVAHFFWQRYLDKKENISHERLDVSEITTTAPSFYAILPFTPIVGVLIFDGKWGPELHIITILVICMLLAAVLEFVRGFNTQKVFSGLEVAYRGMADAFAGVVMLLVAAGVFAQGLSTIGFIQSLISIATSFGSASIILMMVLVVLTMLAAMTTGSGNAPFYAFVEMIPKLAHSSGINPAYLTIPMLQASNLGRTISPVSGVVVAVAGMAKISPFEVVKRTSVPVLVGLVIVIIATEVLVPGTAVG
>NZ_CP013990.1|WP_032617017.1|3523298_3523874_-|lipid-IV(A)-palmitoyltransferase-PagP
MTIINKFFIVFPFIFAQFSFSTVAMAKDVPPLRAWVKTIHNDMVETWEAPQHYDLYVPAITWHARFAYDKEKTDRYNERPWGAGFGQSRWDEKGNWHGLYAMAFKDSYNKWEPIAGYGWEKTWRPLADDNLHLGLGFTAAVTARDNWNYIPIPLVLPLASVGYGPATFQMTYIPGTYNNGNVYFAWMRFQF
>NZ_CP013990.1|WP_002439184.1|3522898_3523108_-|transcription-antiterminator/RNA-stability-regulator-CspE
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKGPSAANVIAL
>NZ_CP013990.1|WP_032617018.1|3522295_3522679_+|fluoride-efflux-transporter-CrcB
MFQLLLAVFIGGGTGSVARWLLSMRFNPLHQQIPFGTLTANLIGAFIIGLGLAWFNRMPHLDPVWKLLITTGFCGGLTTFSTFSAEVVFLLQDGRAAWALLNIAVNLLGSLMMTALAFWLISAVNAH
>NZ_CP013990.1|WP_059308520.1|3521440_3522229_-|deaminated-glutathione-amidase
MYVAVGQFAVTANWQKNAETCVSLMAQAAAQGASLLVLPEALLARDDNDPDLSVKSAQPLDGGFLAMLLAESARNELTTVLTVHVPSTAGRAINTLVALRGGRIVEQYAKLHLYDAFNIQESRLVDAGTRVPPLIEIEGIRLGLMTCYDLRFPEMALNLALAGAEVLVLPAAWVRGPLKEHHWSTLLAARALDTTCYVVAAGECGNKNIGQSRIIDPLGVTIAAAAEGPALLIAEISQQRITLARQQLPVLRNRRFAPPQLL
>NZ_CP013990.1|WP_059308524.1|3530698_3532261_-|alkyl-hydroperoxide-reductase-subunit-F
MLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSEKVTFKEDNSLPVRKPSFLITNPGSTQGPRFAGSPLGHEFTSLVLALLWTGGHPSKEAQALLEQIRDIEGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGVFQNEITDRNVMGVPAVFVNGREFGQGRMTLTEIVAKVDTGAEKRAAEELNKRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVNDYEVDVIDSQSASKLVPAAQEGGFHEIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVTGLEYRDRVSGDVHSVALAGIFVQIGLLPNTTWLEGAIERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDHLIRTKA
>NZ_CP013990.1|WP_032617008.1|3532575_3533139_-|alkyl-hydroperoxide-reductase-subunit-C
MSLINTKIKPFKNQAFKNGDFVEITEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFENMREDEGLADRGTFIVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGDATLAPSLDLVGKI
>NZ_CP013990.1|WP_032617007.1|3533892_3534789_+|LysR-family-transcriptional-regulator
MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLFITPSAVSQSLQRLRNQLNDPLFIRSGKGITPTTVGTNLHIHLEQNLNQLEQTINIMHGSKLTKNFVIYCPQLVTPQVMLEPMKRLMDLHNYEIELHDLLLAPDSTESLLAYRKADLVFSFAPVQNRSIVCTPFKTLPFTLVCRNDHPRINGKIEIEDLLQEKFTAFLSEEPGVKDYQQKMNHKLSERNIVFRSDSFMSILAMISASDLVGVAPETTFEQFGKVLNLKRVEVDYKLPPVEIYMMYNRSALNSPVFADFIENSLA
>NZ_CP013990.1|WP_059308525.1|3534857_3536018_-|pyridoxal-phosphate-dependent-aminotransferase
MSNNPLIPQSKLPGLGTTIFTQMSALAQQHKAINLSQGFPDFDGPDYLQQRLAYHVANGANQYAPMTGAQPLREAIADKTAELYGYQPDANSEITVTAGATEALYAAITALVRTGDEVICFDPSYDSYAPAIELSGGVVKRVALQPPHFRPDWQAFAGLLSDKTRLVILNTPHNPSATVWQKEDFAALWQAIAEREIYVLSDEVYEHICFADAGHASVLAHPQLRERAIAVSSFGKTFHMTGWKVGYCVAPAAISAELRKVHQFLTFAVNTPAQLAIADMLRNQPEHYRELPDFYRARRDLFIDALSASRLKILPCEGTYFLLADYSAISDLDDVSFCQWLTKEVGVAAIPLSVFCADPFPHKLIRLCFAKQEATLQAAAELLAAI
>NZ_CP013990.1|WP_059308526.1|3536139_3536754_+|methylthioribulose-1-phosphate-dehydratase
MTDNLQLTSLVDACHWIGAKGWAPATGGNMSVRQDDNWCWLSESGKDKGSLTPDDFLQVEIATNRAPSGRKPSAETGLHTLVYRLFPAANAVLHVHTVNATVLSRLVKEPELHLSGFEMQKSLSGQTSHLDTVPIAVFDNDQDIDALASRIADYARQRPLNYGFLLRGHGLTCWGRDVAEARRHLEGLEFLFECEMRLRQLERV
>NZ_CP013990.1|WP_059308527.1|3536750_3537440_+|acireductone-synthase
MIRAIVTDIEGTTSDIRFVHNVLFPYARERLAAFVSAQQYAEPVNTILDNLREEIAQPQASTNDLIATLFAFMDEDRKSTALKALQGIIWQDGYVNGDFTGHLYPDVLPALEKWKSQGIDLYVYSSGSVAAQKLLFGYSDEGDITHLFSGYFDTHIGAKRDVQSYQNIAAQINLAPSQILFLSDIHQELDAAEQAGFRTLQLIRGDDDGTSHHHQVHQFDDINPEQIPS
>NZ_CP013990.1|WP_059308528.1|3537436_3537979_+|cupin-domain-containing-protein
MSALTIFSDKEASEPQWHSTDPEAIQQQLNARGVRFERWEADRDLGRDPAADTVINAYQHAIDKLVAEKGYQSWDVISLRADNPQKEALRAKFLNEHTHSEDEVRFFVEGAGLFCLHIDDQVYQVLCEKNDLISVPAGTPHWFDMGSEPNFTAIRIFDNPEGWVAQFTGDAIADAYPRLP
>NZ_CP013990.1|WP_059308529.1|3538569_3539598_-|S-methyl-5-thioribose-1-phosphate-isomerase
MQRLQTTSLRVTENQLFILDQQALPQEKRWLDASTVDALVGHIHALRVRGAPLIGLSASLLLALLAENGHNRDALAVALETLRAARPTAVNLMNNLDRMKQALWQEDYVPALVAEALRLIDEDKRLCDAIARAGSALVTPGSRLLTHCNTGGLATAGVGTALGVIAFAHQQGNVSQVWVDETRPLLQGGRLTAWELGELGVPYQLITDSMAASLMAKGQVDAVWVGADRIAANGDVANKIGTYSLAVLAKFHGIPFYVAAPQTTLDPACPNGEAIPIEQRDAREVTGVAGSFGAVQWAPVDAQVYNPAFDVTPAALISGWVLDSGVVTPEEVAKGGFGERMG
>NZ_CP013990.1|WP_059308530.1|3539703_3540903_+|S-methyl-5-thioribose-kinase
MSQYRTFTAHDAVAYAQQFGGLEDPSSLVEAQEVGDGNLNLVFKIFDSAGVSRIIVKQALPYVRCVGESWPLTLDRARLEAQTLVEHYQHSPQHTVKIQHFDPELAVMVMEDLSSHKIWRGELINNVYYPQAARQLGEYLAHTLFHTSDFYLHPHAKKAQVAQFINPEMCEITEDLFFNDPYQIHERNNYPEALENDVAALRNDHQLKIAVASLKHRFFSQAEALLHGDIHSGSIFVAEGSLKAIDAEFGYFGPIGFDIGTAIGNLLLNFCGLPGHLGIRDAAAGREQRLIDIQQLWTTFAERFQALAAEKSRDAALSVPGYASAFLKKVWQDAIGFCGTELIRRSVGLSHVADIDSIRDDEMRHECLRHAITLGKALIVIADRIDSVDELVARVRQYS
>NZ_CP013990.1|WP_032617000.1|3540971_3542213_-|LVIVD-repeat-containing-protein
MSQLPTPEYSRNMRLIGHSDQGGRPDGVQLMVHRGFAYIGHMVSQGFSIVDVRDPKNPRAAGYVPAPPGTWNVHLQAHDDLLLVINARDLFADARFADEKVYYTRQVGETVSDVQDRGWSAGLRIFDISTPDKPREIGFLSLDGIGIHRIWYVGGRWAYVSALIDGFTDYIFLTIDLADPRKPEVAGRWWLPGMNQAAGETPAWPEGKRYALHHAIIAGDTAYGSWRDGGLTLLDVKDRTQPKLISHRNWSPPFGGGTHTALPLPDRDLLVVLDEAVLDNQEDGEKLIWLFDIREPSNPVSIATFPQPNERDYVAKGAHFGPHNLHENRPGSFISSTLIFATYQNAGVRAYDISDPYRPVETAALVPAAPEKMMDTRPNRPQVIQSCDVFVDAQGIIYSTDYNGGLSVIEYLG

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Crispr_ID: NZ_CP013990_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013990_7

3585421-3587372

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT

32 spacers

cas6f,cas7f,cas5f,cas8f,cas3f

The CRISPR arrays of NZ_CP013990_7

>merge|NZ_CP013990|7|3585421-3587372|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCTGCTTGTACGGCAGTGAACGCCCTCCTTAACAGACGGGGCATTCTTCGTCATTTCTAAGCTGCCTGTACGGCAGTGAACTGAAACCGTGGGTGTGTCCGTGGGTGCGTAATTTTCTAAGCTGCCTGTACGGTAGTGAACGATCTTCCGGGCATCGCTCATGCTCATTGGTATTTCTAAGCTGCCTGTACGGCAGTGAACGCGTGCCGGTAACTTGGCCGGAGCCGACCCACTTTCTAAGCTGCCTGTACGGCAGTGAACGTGCGTTTCGATCCGCGAAACCTGCACAACGATTTCTAAGCTGCCTGTACGGCAGTGAACGTGCCGCTGATTGATCGGGGCATGAAGGTCGATTTCTAAGCTGCCTGTACGGCAGTGAACAATCATCCTGAGTTGTGCGCTAGACCCGGATACTTTCTGAGCTGCCTGTACGGCAGTGAACTCGTCCGTTGTCCAGCCATTTTTGACCAGGGATTTCTAAGCTGCCTGTACGGCAGTGAACAACACCGACCAGCGCAGTAACTGTCAGTTGTGTTTCTAAGCTGCCTGTACGGCAGTGAACACGACCCGCCGCCGGGTGAGTCCACGTTTTATTTTCTAAGCTGCCTGTACGGCAGTGAACACGACCCGCCGCCGGGTGAGTCCACGTTTTATTTTCTAAGCTGCCTGTACGGCAGTGAACGGGATTTCATTGCCGCAAAGACCAGTGTTTTTTTTCTAAGCTGCCTGTACGGCAGTGAACAATCATTGGCAGGCAGCCCCTTAAGCGATGAATTTCTAAGCTGCCTGTACGGCAGTGAACGCGGGGTTTTTGCTTTCCGGCGATACGACAGGTTTCTAAGCTGCCTGTACGGCAGTGAACCCATATTCGCGCCCTGGGCAATAACGAAAAAATTTTCTAAGCTGCCTGTACGGCAGTGAACAGTTGGATCAGCCGTCTATTCTGCTGGGTTATTTTCTAAGCTGCCTGTACGGCAGTGAACTGCGGGGGCATTTTTTCAAATTGCCGTGTCGCTTTCTAAGCTGCCTGTACGGCAGTGAACACTGGTGGCTGACGCATCGCCGGGTATGGTTATTTCTAAGCTGCCTGTACGGCAGTGAACGTCAAGGCACCGCATGACGGCGATGGAATTCATTTCTAAGCTGCCTGTACGGCAGTGAACATTTCTCTTTGGCTTTTCTGGTCGCCTTTTCATTTCTAAGCTGCCTGTACGGCAGTGAACATTTCTCTTTGGCTTTTCTGGTCGCCTTTTCATTTCTAAGCTGCCTGTACGGCAGTGAACTGGTGGTATCCACTATGGCGCTCTCTATCGCTTTTCTAAGCTGCCTGTACGGCAGTGAACGCACGCACTTTACCAACAACGGAACAACTGGCTTTCTAAGCTGCCTGTACGGCAGTGAACACTCCCCCGGCCGTCACCGCTGGCGCTGATATCTTTCTAAGCTGCCTGTACGGCAGTGAACGATCAACCATTACATTTACACCGATAACCAGCTTTCTAAGCTGCCTGTACGGCAGTGAACTTCCAGGTGCTGCCTGCGGTGTCAGCCGTACAGTTTCTAAGCTGCCTGTACGGCAGTGAACGCTGCGCGGGGATGGATTGCAAGGCATATTCCTTTCTAAGCTGCCTGTACGGCAGTGAACAAGAACGCCGGAGGACACCAGAGGACTAATACTTTCTAAGCTGCCTGTACGGCAGTGAACGGACGTTTACAGCGAAATGGGCGCGGCCTTCGTTTCTAAGCTGCCTGTACGGCAGTGAACCTGATGCTGCGTTTTCCGGGCTTTCCCCTGTATTTCTAAGCTGCCTGTACGGCAGTGAACTCGGTTCCACATGTCCAGCACACCGCCAGTACTTTCTAAGCTGCCTGTACGGCAGTGAACACTATGTCCGTTCCGTACTCCATATGGACGTATTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP013990|7|1|3585421-3587372|PILER-CR
TTTCTAAGCTGCTTGTACGGCAGTGAAC	GCCCTCCTTAACAGACGGGGCATTCTTCGTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGAAACCGTGGGTGTGTCCGTGGGTGCGTAAT
TTTCTAAGCTGCCTGTACGGTAGTGAAC	GATCTTCCGGGCATCGCTCATGCTCATTGGTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCGTGCCGGTAACTTGGCCGGAGCCGACCCAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTGCGTTTCGATCCGCGAAACCTGCACAACGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTGCCGCTGATTGATCGGGGCATGAAGGTCGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATCATCCTGAGTTGTGCGCTAGACCCGGATAC
TTTCTGAGCTGCCTGTACGGCAGTGAAC	TCGTCCGTTGTCCAGCCATTTTTGACCAGGGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AACACCGACCAGCGCAGTAACTGTCAGTTGTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACGACCCGCCGCCGGGTGAGTCCACGTTTTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACGACCCGCCGCCGGGTGAGTCCACGTTTTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GGGATTTCATTGCCGCAAAGACCAGTGTTTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATCATTGGCAGGCAGCCCCTTAAGCGATGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCGGGGTTTTTGCTTTCCGGCGATACGACAGG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCATATTCGCGCCCTGGGCAATAACGAAAAAAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGTTGGATCAGCCGTCTATTCTGCTGGGTTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGCGGGGGCATTTTTTCAAATTGCCGTGTCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACTGGTGGCTGACGCATCGCCGGGTATGGTTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTCAAGGCACCGCATGACGGCGATGGAATTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTCTCTTTGGCTTTTCTGGTCGCCTTTTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTCTCTTTGGCTTTTCTGGTCGCCTTTTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGTGGTATCCACTATGGCGCTCTCTATCGCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCACGCACTTTACCAACAACGGAACAACTGGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACTCCCCCGGCCGTCACCGCTGGCGCTGATATC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GATCAACCATTACATTTACACCGATAACCAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTCCAGGTGCTGCCTGCGGTGTCAGCCGTACAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTGCGCGGGGATGGATTGCAAGGCATATTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGAACGCCGGAGGACACCAGAGGACTAATAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GGACGTTTACAGCGAAATGGGCGCGGCCTTCG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGATGCTGCGTTTTCCGGGCTTTCCCCTGTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCGGTTCCACATGTCCAGCACACCGCCAGTAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACTATGTCCGTTCCGTACTCCATATGGACGTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP013990|7|7|3585421-3587372|CRISPRCasFinder
TTTCTAAGCTGCTTGTACGGCAGTGAAC	GCCCTCCTTAACAGACGGGGCATTCTTCGTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGAAACCGTGGGTGTGTCCGTGGGTGCGTAAT
TTTCTAAGCTGCCTGTACGGTAGTGAAC	GATCTTCCGGGCATCGCTCATGCTCATTGGTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCGTGCCGGTAACTTGGCCGGAGCCGACCCAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTGCGTTTCGATCCGCGAAACCTGCACAACGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTGCCGCTGATTGATCGGGGCATGAAGGTCGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATCATCCTGAGTTGTGCGCTAGACCCGGATAC
TTTCTGAGCTGCCTGTACGGCAGTGAAC	TCGTCCGTTGTCCAGCCATTTTTGACCAGGGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AACACCGACCAGCGCAGTAACTGTCAGTTGTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACGACCCGCCGCCGGGTGAGTCCACGTTTTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACGACCCGCCGCCGGGTGAGTCCACGTTTTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GGGATTTCATTGCCGCAAAGACCAGTGTTTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATCATTGGCAGGCAGCCCCTTAAGCGATGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCGGGGTTTTTGCTTTCCGGCGATACGACAGG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCATATTCGCGCCCTGGGCAATAACGAAAAAAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGTTGGATCAGCCGTCTATTCTGCTGGGTTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGCGGGGGCATTTTTTCAAATTGCCGTGTCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACTGGTGGCTGACGCATCGCCGGGTATGGTTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTCAAGGCACCGCATGACGGCGATGGAATTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTCTCTTTGGCTTTTCTGGTCGCCTTTTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTCTCTTTGGCTTTTCTGGTCGCCTTTTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGTGGTATCCACTATGGCGCTCTCTATCGCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCACGCACTTTACCAACAACGGAACAACTGGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACTCCCCCGGCCGTCACCGCTGGCGCTGATATC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GATCAACCATTACATTTACACCGATAACCAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTCCAGGTGCTGCCTGCGGTGTCAGCCGTACAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTGCGCGGGGATGGATTGCAAGGCATATTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGAACGCCGGAGGACACCAGAGGACTAATAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GGACGTTTACAGCGAAATGGGCGCGGCCTTCG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGATGCTGCGTTTTCCGGGCTTTCCCCTGTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCGGTTCCACATGTCCAGCACACCGCCAGTAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACTATGTCCGTTCCGTACTCCATATGGACGTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP013990|7|1|3585421-3587372|CRT
TTTCTAAGCTGCTTGTACGGCAGTGAAC	GCCCTCCTTAACAGACGGGGCATTCTTCGTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGAAACCGTGGGTGTGTCCGTGGGTGCGTAAT
TTTCTAAGCTGCCTGTACGGTAGTGAAC	GATCTTCCGGGCATCGCTCATGCTCATTGGTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCGTGCCGGTAACTTGGCCGGAGCCGACCCAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTGCGTTTCGATCCGCGAAACCTGCACAACGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTGCCGCTGATTGATCGGGGCATGAAGGTCGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATCATCCTGAGTTGTGCGCTAGACCCGGATAC
TTTCTGAGCTGCCTGTACGGCAGTGAAC	TCGTCCGTTGTCCAGCCATTTTTGACCAGGGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AACACCGACCAGCGCAGTAACTGTCAGTTGTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACGACCCGCCGCCGGGTGAGTCCACGTTTTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACGACCCGCCGCCGGGTGAGTCCACGTTTTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GGGATTTCATTGCCGCAAAGACCAGTGTTTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATCATTGGCAGGCAGCCCCTTAAGCGATGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCGGGGTTTTTGCTTTCCGGCGATACGACAGG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CCATATTCGCGCCCTGGGCAATAACGAAAAAAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGTTGGATCAGCCGTCTATTCTGCTGGGTTAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGCGGGGGCATTTTTTCAAATTGCCGTGTCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACTGGTGGCTGACGCATCGCCGGGTATGGTTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTCAAGGCACCGCATGACGGCGATGGAATTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTCTCTTTGGCTTTTCTGGTCGCCTTTTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTCTCTTTGGCTTTTCTGGTCGCCTTTTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGTGGTATCCACTATGGCGCTCTCTATCGCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCACGCACTTTACCAACAACGGAACAACTGGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACTCCCCCGGCCGTCACCGCTGGCGCTGATATC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GATCAACCATTACATTTACACCGATAACCAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTCCAGGTGCTGCCTGCGGTGTCAGCCGTACAG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTGCGCGGGGATGGATTGCAAGGCATATTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGAACGCCGGAGGACACCAGAGGACTAATAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GGACGTTTACAGCGAAATGGGCGCGGCCTTCG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGATGCTGCGTTTTCCGGGCTTTCCCCTGTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCGGTTCCACATGTCCAGCACACCGCCAGTAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACTATGTCCGTTCCGTACTCCATATGGACGTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013990.1\|WP_072250926.1\|3575758_3577285_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP013990.1\|WP_059308546.1\|3573417_3574062_+\|enterobactin-synthase-subunit-EntD	unknown	unknown	gnl\|CDD\|182334
NZ_CP013990.1\|WP_059308550.1\|3588065_3589061_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP013990.1\|WP_032616967.1\|3579317_3580271_-\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NZ_CP013990.1\|WP_059308551.1\|3589072_3589999_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP013990.1\|WP_059308548.1\|3582374_3583793_+\|fucose-isomerase	unknown	unknown	gnl\|CDD\|225271
NZ_CP013990.1\|WP_032616973.1\|3574197_3575139_+\|D-ribose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380622
NZ_CP013990.1\|WP_032616965.1\|3581390_3582341_+\|transketolase	unknown	unknown	gnl\|CDD\|226467
NZ_CP013990.1\|WP_059308549.1\|3583807_3585307_+\|FGGY-family-carbohydrate-kinase	unknown	unknown	gnl\|CDD\|198363
NZ_CP013990.1\|WP_032616953.1\|3598848_3599871_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP013990.1\|WP_059308547.1\|3575150_3575759_+\|DUF2291-family-protein	unknown	unknown	gnl\|CDD\|227905
NZ_CP013990.1\|WP_032616966.1\|3580567_3581398_+\|transketolase	unknown	unknown	gnl\|CDD\|226468
NZ_CP013990.1\|WP_032616956.1\|3595775_3595928_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP013990.1\|WP_059308553.1\|3591327_3594594_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP013990.1\|WP_032616970.1\|3577286_3578375_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP013990.1\|WP_059308555.1\|3597214_3598783_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173877
NZ_CP013990.1\|WP_032616962.1\|3587500_3588055_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP013990.1\|WP_059308554.1\|3596289_3597003_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP013990.1\|WP_059308556.1\|3599870_3600704_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP013990.1\|WP_059308552.1\|3589991_3591308_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866

Protein	Function_ID	Function_description	E-value
NZ_CP013990.1\|WP_072250926.1\|3575758_3577285_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP013990.1\|WP_059308546.1\|3573417_3574062_+\|enterobactin-synthase-subunit-EntD	gnl\|CDD\|182334	PRK10251, PRK10251, enterobactin synthase subunit EntD.	1.67726e-71
NZ_CP013990.1\|WP_059308550.1\|3588065_3589061_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP013990.1\|WP_032616967.1\|3579317_3580271_-\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	7.89373e-105
NZ_CP013990.1\|WP_059308551.1\|3589072_3589999_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	5.45926e-135
NZ_CP013990.1\|WP_059308548.1\|3582374_3583793_+\|fucose-isomerase	gnl\|CDD\|225271	COG2407, FucI, L-fucose isomerase and related proteins [Carbohydrate transport and metabolism].	4.64862e-135
NZ_CP013990.1\|WP_032616973.1\|3574197_3575139_+\|D-ribose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380622	cd19967, PBP1_TmRBP-like, D-ribose ABC transporter substrate-binding protein such as Thermoanaerobacter tengcongensis ribose binding protein (ttRBP). Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type 1 periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.	5.15064e-139
NZ_CP013990.1\|WP_032616965.1\|3581390_3582341_+\|transketolase	gnl\|CDD\|226467	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	1.52172e-127
NZ_CP013990.1\|WP_059308549.1\|3583807_3585307_+\|FGGY-family-carbohydrate-kinase	gnl\|CDD\|198363	cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup corresponds to a group of putative bacterial glycerol kinases (GK), which may be coded by the GK-like gene, GK2. Sequence comparison shows members in this CD are homologs of Escherichia coli GK. They retain all functionally important residues, and may catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
NZ_CP013990.1\|WP_032616953.1\|3598848_3599871_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.01865e-104
NZ_CP013990.1\|WP_059308547.1\|3575150_3575759_+\|DUF2291-family-protein	gnl\|CDD\|227905	COG5618, COG5618, Predicted periplasmic lipoprotein [General function prediction only].	3.84151e-36
NZ_CP013990.1\|WP_032616966.1\|3580567_3581398_+\|transketolase	gnl\|CDD\|226468	COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].	1.4091e-117
NZ_CP013990.1\|WP_032616956.1\|3595775_3595928_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	2.12746e-08
NZ_CP013990.1\|WP_059308553.1\|3591327_3594594_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP013990.1\|WP_032616970.1\|3577286_3578375_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	2.27658e-86
NZ_CP013990.1\|WP_059308555.1\|3597214_3598783_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173877	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP013990.1\|WP_032616962.1\|3587500_3588055_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.39422e-90
NZ_CP013990.1\|WP_059308554.1\|3596289_3597003_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	3.96283e-24
NZ_CP013990.1\|WP_059308556.1\|3599870_3600704_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.14223e-96
NZ_CP013990.1\|WP_059308552.1\|3589991_3591308_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	1.10104e-169

>NZ_CP013990.1|WP_059308549.1|3583807_3585307_+|FGGY-family-carbohydrate-kinase
MSVNKDIIIALDEGTTNAKAVALDAKGHVVASFSQALAIQTPHEGWVEQSAELLVAASFEVVARTIASVGADRVAALAISNQRETVVGWARATGQPIAPALSWQCSRTAAFCHQLREQGHGPRIKAATGLPIAPLFSGSKMRWLLDNTPDGAQRAARGEICLGTVDSWLLWQLTQGHSFSCDHANAARTQLMNLHTADWDPEMLALFGIPRAALPDIKPSSGLFGYTRGCPSIPDGLPVMAMIGDSHAALFAHGLGAEGCVKATYGTGSSVMAPVSSAHCDVSALATTVAWHDGETLVYGLEGNIPHTGDAVAWMADSTGLSELSQAELIHELNTLPRSVDSTLGVYFVPALTGLGAPWWDENARGMIHGLSRGVKRAHLIRAALEAIAYQIADVVQAMRIHPGFTLNALMVDGGPTKNDWLMQYQADLLGCPVMRSDVPELSAMGAALLARKALFNLTTAQLRQYLPEHVTFTPDMARHARLQTRWQAWQETVERVRT
>NZ_CP013990.1|WP_059308548.1|3582374_3583793_+|fucose-isomerase
MSRIPQQLTMGVIIGNRGFFPSYLVAEAREQAIALFGRLGINTVMLDPSQTELGGVETRQDAKVCAELFRAHRDRIHGVVVLLPNFGDEKAVAETLRLSGLNVPVLVQAEEDNLDKMGLATRRDSFCGKISLCNNLRQYGIPFTLTSQHVCALTGEVFEQDLKRFEQVCRVVSSMRGVRVGAIGARPAGFNTVRYSEKLLERLGIAVETLDLSEVFTRIKTLRDDDIRVDEKRRILIDNADASRIPADKLVTMAKLFVVISEWVVANDIDTTAIQCWTSLQENLGINVCSIMSVMSGQLMPSACEVDVMGALSMYALASSNMNPASIADWNNNFGDDRDKCVLFHCGNFAASSLESPHMGTADIIGTTVGKENTCGAVHGRLKSGPLTYFRLSTDDLTGEIKAYVGQGQSVDDPLDTVGCRAVIQVPHLENLLNWICRNGFEHHVAMNHSASAEILHEAFTRYLGVSTYLHR
>NZ_CP013990.1|WP_032616965.1|3581390_3582341_+|transketolase
MSNSEHLATVMVNAFIDAVDRGVDLVPVVADSTSTAKIAPFMQRFPGRLVNVGIAEQTLVGAAAGLAIGGKIAVTCNAAPFLISRANEQIKVDICYNNTNVKLFGLNAGASYGPLASTHHSIDDIAIMRGFGNIEIYAPSSPNECRQIIDYALDHVGPVYIRLDGKNLPELHDENYQFAPGKIDVLRVGQDVALVAMGSTVHEIVEAAAQLAEEGIDATVISVPSIRPCDTQQLLAAMRSCKAVVSVEEHNVNGGVGSLVAEVLAEAGCAVPLKRLGIPDGQYAIAADRASTRARHEIDVAGVVKHAREMLTRQLC
>NZ_CP013990.1|WP_032616966.1|3580567_3581398_+|transketolase
MNPFSLSIAELESRARSIRRRIIVLNAESPAGGHTGADLSQVELLTALYFRILNCSPQLKDSDERDIYIQSKGHAVGGYYCVLAEAGFIPVEWLSTYQHADSHLPGHPVKHKTPGIELNTGALGHGLPVAVGIALAAKRNNSKRRVFVVTGDGELAEGSNWEAALVAAHYQLDNLFIINDKNNLQLAGSTKEILNTDPLDAKWKAFGLEVTGCNGNDMADVVATLEGLTPNGKPHVVIAHTTKGAGISFIQGRPEWHHRVPKGEEIELALEELKDE
>NZ_CP013990.1|WP_032616967.1|3579317_3580271_-|sugar-binding-transcriptional-regulator
MSKQDEQRLLVKIATLYYSENKKQSEIASLLHLSQSFVSRALTRCQKEGLVKITVVQPTNIFVSLEKALEEQYGIRQAIVVDVGENPSNAQIKHAIGSAAAHYVETRLRPEDLVGISSWSSTIRCMVDEMHPQNIRAAGVIQLLGGVGPNGNVQATILTQQLAAHLGCPAWLLPSQSIEHSVEERARLVSSPDVAGVVSKFAEVDVAIVGIGELEPSQLLKNSGNYYNEDMLKLLAERGAVGDICLHYYDANGEPVLSPEEDPVIGMELAQIRACPQVIALAGGAEKGNAIRGALEGNYINVLITDYPTARSLLKEA
>NZ_CP013990.1|WP_032616970.1|3577286_3578375_+|ABC-transporter-permease
MKTTQSVALVPQKGAAPSREKLLLLLLKMRTFIALFLIVGFFTMTVPGFLSAGSLVIMIKHIAINAFLALGITFVIITAGIDLSIGATLGLCGMIAGWMITKGIVLPMFGIAIFPSVWVIVPVVLLIGALIGAVNGWIITRYNVAPFICTLGTMYVLRGASMLTSDGQTFPGLSGNPQLGNTGFDEIGAGTLLGIPWAIWMMIVLALVIAYIARRLPFGRHVYAIGDNERAAELSGVRVKQVKVLVYTLSGFCAAIAGIVVSAQLLASHPANGTAFEMNAIAAVVLGGTSLAGGRGTILGTLIGAFVIGFLADGLVMMGVSEFWQMVIKGIVIIVAVIIDQMQNRMQQKAAVVAQKAVMEGK
>NZ_CP013990.1|WP_072250926.1|3575758_3577285_+|sugar-ABC-transporter-ATP-binding-protein
MSDNPAEDIILSTQGISMLFPGTVALDKVDYRVWRGKVNVIIGENGAGKSTLMKILAGVQQPSLGEMWLNGKQVAFSSTRDAAAHGIGMVHQELNLFENLNVAENVFLGRELQKGVTPINEAEQESRTAALLKRLDQPISPRELVGNLKVGQQQLIEIAKALAEDADILILDEPTSALSKTEVEILFRVIRELTRQGVTIIYISHRLEELMAIGDVITILRDGKFQAEAKVEDIDVPWIVREMLGSDPVSNFLEPGRTFGAPVLEAEHITCVNAAGNTVVNDVSFQVNAGEIVGIYGLMGAGRTELFECMLGTERNYLGKLWLDSKPVPQRLTTAERIRMGMSLVPEDRKRTGIFPGSSVASNLTIASLWRRLQRGFTIAQKAEQEVVASTIGNLSIKVSTPEVEIQALSGGNQQKVVIGRSLLTNPKVLFLDEPTRGIDVGAKADVFRMMVQLSQQGIAVVFSTSDLKEIMAVSDRILVMSGGKLTADIVRDRADESALVTASAQGF
>NZ_CP013990.1|WP_059308547.1|3575150_3575759_+|DUF2291-family-protein
MRLTQWGAALTGAAALLLTACTVVDLDENGKPIMPADPNAKASFDNQTPQQIAQQTWQPRILDAAKNHALDASALSTQLKTPSDKPQSVFVRLSGKVERVEASNANEQKLVMTVNGQPLEIQSGPVMRGNAIRDAAGFRFDEFTNQVQYAQLSRALNREAVKHLPKVDDSWRGKNATVLFATTLTGGKANEAAALELKQEAP
>NZ_CP013990.1|WP_032616973.1|3574197_3575139_+|D-ribose-ABC-transporter-substrate-binding-protein
MNTTFVKSALLASMIAASGSLFAADNGLIAIITPSHDNPFFKAEADGAAAKAKELGYTTLVASHDDDVNKQNQLIETAIARKAKAIILDNAGADATVGPLEKAKAAGVPAFLIDREINKTGIAVAQIVSNNYQGAQLGAEKFVKLLDGKGKYVELLGRPSDTNAHVRSQGYHDVLDDYPDMKMVAQQTANWSQTEAFTRMEAILQTNPDIVGVISGNDTMALGAEAALKAAGKNNVIVVGFDGSDYTRDSILKNGNIKATVLQPGWQQAQMAVEQADYYLKNGKAQKDEKQLMDCVLIDETNASKLNLFNLSK
>NZ_CP013990.1|WP_059308546.1|3573417_3574062_+|enterobactin-synthase-subunit-EntD
MQTTYSTFLLAGYTIHRVTFDPATFTEADLLWLPHHEQLSSAGRKRKADHLAGRIAAFHALNRQTLPGIGSNGEPLWPAGVCGSISHSGSLAVAICQEKGLVGIDCEAIIAENEARDIQDGVVDTQEAQRLAESGLPFDLAFTLAFSAKESLFKALFPRVQTWMGFESARVTALTSDTLTLTLTCPLPPFVQNQAFTLHWCRIDAQVITLICDA
>NZ_CP013990.1|WP_032616962.1|3587500_3588055_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MESYQEIRVLPDPEFTEETLMAALFAKLHRALGAYGQGDIGISFPEHAQKLGGVIRLHGSQAALGKLEESRWRAGLNDYCRATAILAIPANTGWRVVSRVQVKSSVERLVRRSLRKGWITEEQAQQRIAEGKDKRCHLPFLPLRSLSTGQSFKLFIRHSEIQTAPVSGSFSSYGLSDTATVPWF
>NZ_CP013990.1|WP_059308550.1|3588065_3589061_-|type-I-F-CRISPR-associated-protein-Csy3
MAKNTVIKTASVLAFERKLANSDAVLFSGNWEGTEWQPIQIQEKAVRGTISNRLKNALASDPAKLDAEIQKANLQRVDVAALPADADTLKMTFSLRVLGNLAVPSVCNDKNYQDALQTVIEGYIAEQGFAELALRYATNLANARFLWRNRVGAEHIRVVVKGSKLWTFNAHDYSLRDFTQRDSALQELADEIERGLKGDTFVLLNVEAFVRFGQGQEVFPSQELVLDSNSTKSKVLYQVNSVAALHSQKVGNALRTIDTWHPQVDALGAIAIEPYGSVTSRGIACRQPKEKMDFYTLLDNWVTKGDKPAADQQHYVMAVLIRGGVFGEKSE
>NZ_CP013990.1|WP_059308551.1|3589072_3589999_-|type-I-F-CRISPR-associated-protein-Csy2
MSNLIILPWLEVENANAVAGLTWGFPAITHFLGYTHALSRKLQVSHGLRLEGCGVICHRHQAHAYSSGRDYQFALTRNPLTREGKTASFNEEGRMHMTVSLVVECHGEIANGDVGMHELAAHLQTLCQTQKLAGGSITGLRRVQVFSTANLKTKLYGLMPGFVLQDRSPWLEEHYQTLRQQNPDAEMIDAWLDFAALKMAADEREGTAENVTWGYLKKPQPGYLVPLMIGWQRISPLYEPGLVANARDDESPFCFAEAVYGVGEWRGIHHINTADELLWRYRTTDTGYYCCGQTTVDDEADDYFDTEY
>NZ_CP013990.1|WP_059308552.1|3589991_3591308_-|type-I-F-CRISPR-associated-protein-Csy1
MSQKGLVTFIVDYIAGRRQTKLDAFDKEMVKRLAAGEHESDVLTERRELELRYGTQAWLTDAASRTGQISLVTHAAKYTHGDAKSSSIFTHTTATEGYLSTATLTKPAADAVGNAAALDVARLLQTETEGDSLLASLQRNDHAALAELAENDEQLSVWIEGFSRALTTKQPTSHKLAKQVYYPVGEGYHLLNPLFSSSLAQALHQRMVEHRFSEESKAAWKARREKRGYPQPLVIFPNTAVMNFGGTKPQNISSLNSSRGGRVWLLPSSAPQWESQAKPPLGCKTLFAYKPFEYATRGILRRLISLLVDSGEDNNYRIRRACQRYVDEIIDVLFNVAADIQRQEWAGWTTHEKCALKPHQQLWLDPRRAKTDEAFFNERDKDQWQAAVADDFARWLNSHLRQAELSVGQTERREWRTAPLFSRRLRDMENALKGYRHE
>NZ_CP013990.1|WP_059308553.1|3591327_3594594_-|type-I-F-CRISPR-associated-helicase-Cas3
MNVLLISRCSKNAREQSCQILDQFAERKGNSAWQTSITLEGLNTLRRLLRKTARRNTAVACHWIKKSGQTELVWIVGNPKRFNAQGTVPTHRTSRDILRNRHEARWPATEAIALLASIAGLFHDFGKASALFQDGLTGQKTKHRYQPFRHEWISVRLFQAFIAEQTDREWLTTLGSLSAKDESLWLERIQKDTQLWSCSPFTTLPPLAQFVAWLILSHHRLPEYLGKNIPDLSGSETWLTNQLNVTWNALNHISSDWREEDFQRAWTFPAGLPLRSHTWQDKARQLAKRAANAVSLGLFGKMDQVLTLHMARLALMLADHHYSSQDPVAAWQDADYSAWANTHRQTGHLKQKLDEHIAGVSHHALLLGRSLPLLRCQLPAITRHKGFRERAKDERYRWQNKAWDVSESLSERARKQGFFGINMASTGCGKTFANARIMYALAGEDEGCRFTVALGLRTLTLQTGEALRRRLGLGEDDLAVIVGSRAVRELHQEAQEPEPDESSASEEAFFESHQYVHYDGVPNNGPLRHWLEKDTTLRQLVDAPVLVTTIDHLIPATEGVRGGKQIAPMLRLLTSDLVLDEPDDFDIADQHALCRLVNWAGMLGSRVLLSSATLPPAFVLALHTAYCSGRKAWQQACGEPGMPLEVCCAWFDEDIAQEKVCTTAEDFYHAQCAFAESRAKRLAKKNVLRISDIVNVTTSSSQSSEVISGLANTLHAEILKLHKVHQQPAEKGKTVSSGLVRMANINPLVATAQALMRIPSPDGYCIHYCVYHSQHPLAVRSFIEKQLDLAFTRDATKPHQLHPSIQQAIHEHPAQHHIFVVLGTSVIEVGRDWDADWGIIEPSSMRSLIQFAGRIQRHRQIAPSNANMLILNKNVRALSSVNADSPAYCRPGFETQDFMLSSHDMQEMLQVEQYRFINSVPRIVATTFRHAKGARYDNLSTLEHGRSAEELLGKKRTHPVAADWWRAKVTWSGELQRRTPFRRSQPEAQFFLMMEDEFDEPRFMARDDGAKGWKNPGLFIRQPTDMAEGVRAWINTDYAAVLMALADAFDLDLTQVCERFGEINLRASKDEDAKDWLWHPLLGVFRDR
>NZ_CP013990.1|WP_032616956.1|3595775_3595928_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLNKYAFAAILVMGLTVLGVTFLVRETLCELSFKERDWEVKAVLAYETKK
>NZ_CP013990.1|WP_059308554.1|3596289_3597003_-|GNAT-family-N-acetyltransferase
MPEINSWGQTVNDPVPDWQGASVLERGVLEGRFCRLEPLDAAQHGVDLFDAYALGDDSDWTWLASNQPASIEATVDWLQGKVQDEALVPFAVIDRHSERAVGLVCYMAIEQQLGSVEIGHVTWSRKMKNSPLGTEAIWLLLKYGFERGYRRLEWKCDSMNIASRRAAERLGFVWEGRLRQKLVRKGRNRDSDMLSIIDSEWPERDAAIRGWLAADNFDENGRQIRRLETFHIRPETA
>NZ_CP013990.1|WP_059308555.1|3597214_3598783_+|ABC-transporter-substrate-binding-protein
MTKKILPLLVLAALSATVHAATPPDTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRLVQPDRDNPEKITPILAESWEADAAAKTLTIKLKPDAKFASGNPLRPEDVIFSYTRAITMNKSPAFILNVLGWEPGNIASQLKKVDDHTLQLHWTADVSPSVALNILSTPIASIVDEKLVTANVKGDDLGNAWLKMHSAGSGAYKMRVYQPHQAIVLEANASAPGGAPKLKNIIIKNVPDPASRRLLIEQGDADVARDLGADQVGALTGKPGVSVLSIPSAEQNYLVFNAGNSANPLLNNPAFWEASRWLVDYEGITKDLLKGQYFVHQSFLPVGLPGALENNPFRFDPAKAKEILAKAGIKDAHFTLDVENKPPFITIAQSMQASFAQGGVKVDLLPAAGSQVYARVRAKQHQAAIRLWIPDYFDAHSNASAFAWNDGKSSTVAGLNGWQIPELNKATLAAVAEPDPAKRLDLYKQMQEQLQHTSPYVFVDQGKTQIVVRDNVKGYQQGLNADMVWYDRVTK
>NZ_CP013990.1|WP_032616953.1|3598848_3599871_+|ABC-transporter-permease
MPPLSTHVARVLQGLLTLFLTLLGLLLVTFALSALSPVDRVLQIVGDHASQSTYDQVRHQLGLDQPLPVQFWHYLVDLVHGDLGTASATGQPVLQDLLHAFPATLELATLALILGSLLGVMAGVLCARYAGSPLDMVIRTLTLLGNSVPIFWLGLLMLALFYAKLQWSAGPGRLDDIWQYTVEPRSGFALIDTWLSGDMAAFKNAASHLVLPVLLLAYYSLASITRLTRSACLSEMNKEYILLARAKGAGEMTILLRHVLPNIRSTLFTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAIMGGTLLIGVCFVLINNLTDLLVRFTDPRVR
>NZ_CP013990.1|WP_059308556.1|3599870_3600704_+|ABC-transporter-permease
MPFYLFLRRLRRSPAASCGLIIITLLLLVALFAPWLAPLDPNWQDAAARLQPPNAQHWLGTDSYGRDLLSRLIYGSRPALGLVALVTVITLPAGLLVGILSGYYGGWLERVLMRFTDVVMSMPRLILAFAFVAMLGPGLVNGALALALTTWPAYARQARSEIQRLRHSDYLAAAEMMGIRGFRLLLGHILPLCLPSAIVRLALDLAGIILAAAGLGFLGLGARPPMAEWGAMIADGMQVIFDQWWIAAIPGGAILIASLAFNLLGDGLRDVLEPQHD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013990_7	7.14\|3586230\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586230-3586261	32	NC_019522	Pectobacterium phage ZF40, complete genome	16759-16790	0	1.0
NZ_CP013990_7	7.2\|3585509\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3585509-3585540	32	NZ_CP026759	Klebsiella aerogenes strain AR_0062 plasmid tig00000059_pilon, complete sequence	18302-18333	4	0.875
NZ_CP013990_7	7.2\|3585509\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3585509-3585540	32	NZ_CP021854	Proteus mirabilis strain AR_0156 plasmid unitig_2, complete sequence	7064-7095	4	0.875
NZ_CP013990_7	7.2\|3585509\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3585509-3585540	32	NZ_CP021695	Proteus mirabilis strain AR_0155 plasmid tig00000123, complete sequence	117502-117533	4	0.875
NZ_CP013990_7	7.14\|3586230\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586230-3586261	32	MK448234	Klebsiella phage ST11-VIM1phi8.2, complete genome	25044-25075	4	0.875
NZ_CP013990_7	7.14\|3586230\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586230-3586261	32	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	16090-16121	4	0.875
NZ_CP013990_7	7.14\|3586230\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586230-3586261	32	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	16090-16121	4	0.875
NZ_CP013990_2	2.1\|1038081\|33\|NZ_CP013990\|CRISPRCasFinder	1038081-1038113	33	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	196155-196187	6	0.818
NZ_CP013990_7	7.29\|3587133\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587133-3587164	32	NC_022049	Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence	101790-101821	6	0.812
NZ_CP013990_3	3.1\|1109614\|30\|NZ_CP013990\|CRISPRCasFinder	1109614-1109643	30	NC_007491	Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence	49346-49375	7	0.767
NZ_CP013990_3	3.1\|1109614\|30\|NZ_CP013990\|CRISPRCasFinder	1109614-1109643	30	NZ_CP050125	Rhodococcus erythropolis strain KB1 plasmid plas1, complete sequence	187775-187804	7	0.767
NZ_CP013990_3	3.1\|1109614\|30\|NZ_CP013990\|CRISPRCasFinder	1109614-1109643	30	NZ_CP034156	Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence	196097-196126	7	0.767
NZ_CP013990_3	3.1\|1109614\|30\|NZ_CP013990\|CRISPRCasFinder	1109614-1109643	30	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	84758-84787	7	0.767
NZ_CP013990_3	3.1\|1109614\|30\|NZ_CP013990\|CRISPRCasFinder	1109614-1109643	30	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	229729-229758	7	0.767
NZ_CP013990_3	3.1\|1109614\|30\|NZ_CP013990\|CRISPRCasFinder	1109614-1109643	30	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	354587-354616	7	0.767
NZ_CP013990_3	3.1\|1109614\|30\|NZ_CP013990\|CRISPRCasFinder	1109614-1109643	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	91190-91219	7	0.767
NZ_CP013990_3	3.1\|1109614\|30\|NZ_CP013990\|CRISPRCasFinder	1109614-1109643	30	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	10313-10342	7	0.767
NZ_CP013990_3	3.1\|1109614\|30\|NZ_CP013990\|CRISPRCasFinder	1109614-1109643	30	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	818882-818911	7	0.767
NZ_CP013990_7	7.2\|3585509\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3585509-3585540	32	NC_011314	Aliivibrio salmonicida LFI1238 plasmid pVSAL320, complete sequence	13897-13928	7	0.781
NZ_CP013990_7	7.2\|3585509\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3585509-3585540	32	NZ_CP034239	Aliivibrio salmonicida strain VS224 plasmid pVS320-224, complete sequence	6455-6486	7	0.781
NZ_CP013990_7	7.14\|3586230\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586230-3586261	32	NZ_MH909329	Leclercia adecarboxylata strain 150707804 plasmid p707804-3FII, complete sequence	107082-107113	7	0.781
NZ_CP013990_7	7.30\|3587193\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587193-3587224	32	MH617214	Microviridae sp. isolate cthh943, complete genome	3259-3290	7	0.781
NZ_CP013990_7	7.3\|3585569\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3585569-3585600	32	NZ_CP041205	Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence	367793-367824	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_025021	Escherichia coli plasmid pGBG1	3520-3551	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	23249-23280	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NZ_CP044141	Escherichia coli O157 strain AR-0430 plasmid pAR-0430-4	14164-14195	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	EF120455	Enterobacteria phage HK544 restriction alleviation (ral) gene, partial cds; and antitermination protein (N), conserved hypothetical protein (HK544c103), conserved hypothetical protein (HK544c104), prophage repressor (cI), repressor (cro), and transcriptional activator (cII) genes, complete cds	2175-2206	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	LQ940956	Sequence 13 from Patent WO2014135838	37258-37289	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	HV030377	JP 2011056337-A/1: A method of operation for a chained molecule	37258-37289	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	LC487997	Stx2-converting phage Stx2a F578 genes for Shiga toxin 2 production region, complete sequence	10922-10953	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682385	Escherichia phage PA33, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	CQ832099	Sequence 8 from Patent WO2004056986	1548-1579	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	AP012539	Stx2-converting phage Stx2a_WGPS6 proviral DNA, complete genome	12844-12875	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682382	Escherichia phage PA29, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682389	Escherichia phage PA45, complete genome	12245-12276	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	LG109818	KR 1020150126026-A/13: ENZYME STALLING METHOD	37258-37289	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682383	Escherichia phage PA30, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_049949	Escherichia phage Lambda_ev207 genome assembly, chromosome: 1	36509-36540	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_004914	Stx2 converting phage II DNA, complete genome	42820-42851	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	MN855687	Bacteriophage sp. isolate 528, complete genome	1339-1370	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	DD017402	METHOD FOR DETECTING NUCLEIC ACIDS	37258-37289	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	EF120461	Enterobacteria phage HK106 conserved hypothetical protein (HK10601), antitermination protein (N), hypothetical protein (HK10603), putative hif-contiguous protein B (hicB), putative hif-contiguous protein A (hicA), prophage repressor (cI), repressor (cro), and transcriptional activator (cII) genes, complete cds	2777-2808	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	FB325579	Sequence 7 from Patent EP1854889	7225-7256	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	HZ164698	WO 2015111248-A/3: Method for Preparation of Unit DNA Composition and Method for Production of DNA-linked body	37264-37295	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682375	Escherichia phage PA11, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	EF120459	Enterobacteria phage CL707 IS10 transposase (IS10 transposase) gene, partial cds; and hypothetical protein (CL70702), antitermination protein (N), hypothetical protein (CL70704), prophage repressor (cI), repressor (cro), and transcriptional activator (cII) genes, complete cds	3666-3697	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682387	Escherichia phage PA42, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	FM180578	Enterobacteria phage 2851, complete genome	10403-10434	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KJ909655	Escherichia Stx1-converting recombinant phage HUN/2013, complete genome	34157-34188	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682384	Escherichia phage PA32, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682386	Escherichia phage PA36, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_049952	Escherichia virus Lambda_2B8 genome assembly, chromosome: 1	36491-36522	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682376	Escherichia phage PA12, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	AP000422	Enterobacteria phage VT2-Sakai genomic DNA, prophage inserted region in Escherichia coli O157:H7	11486-11517	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	FJ188381	Stx2-converting phage 1717, complete genome	11073-11104	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	MC431151	JP 2019022513-A/3: Method for Preparation of Unit DNA Composition and Method for Production of DNA-linked body	37264-37295	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682391	Escherichia phage PA51, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	LC487996	Stx2-converting phage Stx2a 981509 genes for Shiga toxin 2 production region, complete sequence	13591-13622	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682388	Escherichia phage PA44, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KT232076	UNVERIFIED: Enterobacteria phage lambda, complete genome	39289-39320	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	AF069529	Bacteriophage HK97, complete genome	28270-28301	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_002167	Enterobacteria phage HK97, complete genome	28270-28301	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_001416	Enterobacteria phage lambda, complete genome	37258-37289	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	CS123581	Sequence 8 from Patent WO2005059149	1548-1579	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682372	Escherichia phage PA4, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_011356	Enterobacteria phage YYZ-2008, complete prophage genome	10596-10627	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_019715	Enterobacterial phage mEp234, complete genome	28399-28430	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	JQ086374	Enterobacteria phage HK544, complete genome	28718-28749	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	EF120457	Enterobacteria phage HK244 hypothetical protein (HK24402) gene, partial cds; and hypothetical protein (HK24401), antitermination protein (N), hypothetical protein (HK24404), hypothetical protein (HK24405), prophage repressor (cI), repressor (cro), and transcriptional activator (cII) genes, complete cds	2532-2563	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682377	Escherichia phage PA16, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_049944	Stx2-converting phage Stx2a_WGPS8 proviral DNA, complete genome	10412-10443	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	MA017622	JP 2017536831-A/36: TARGETED ELIMINATION OF BACTERIAL GENES	37258-37289	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_000902	Enterobacteria phage VT2-Sakai, complete genome	10931-10962	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_049954	Escherichia virus Lambda_2G7b genome assembly, chromosome: 1	36992-37023	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	AP000363	Enterobacteria phage VT2-Sakai proviral DNA, complete genome	10931-10962	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	MP278244	Sequence 3 from Patent EP3495482	37264-37295	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	FJ184280	Enterobacteria phage YYZ-2008, complete genome	10596-10627	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682380	Escherichia phage PA27, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	LR597639	Escherichia phage Lambda_ev243 genome assembly, chromosome: 1	35408-35439	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	AP005153	Stx1 converting phage DNA, complete genome	42820-42851	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KF241843	Escherichia phage phi-8 mobile element protein (gam), Kil protein, regulatory protein, single strand DNA-binding protein, hypothetical protein, putative anti-termination protein N, hypothetical proteins, putative cI repressor protein (cI), and putative Cro repressor protein (cro) genes, complete cds	3715-3746	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_019769	Enterobacteria phage HK542, complete genome	27202-27233	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	AJ413274	Bacteriophage Nil2 proviral n gene, ORF22, ci gene, cro gene, cii gene, ORF53, o gene, p gene, ninA gene, ORF29, ORF30, ORF31, ninB gene, ORF175, ninE gene, ORF23, ORF57, antA gene, antB gene, roi gene, ninG gene, ninI gene, q gene, stx2A gene, stx2B gene, ileZ gene, argN gene and argO gene	2056-2087	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682379	Escherichia phage PA21, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	DJ347897	Method for preparation of artificial positive control DNAs used for multiplex PCR	37258-37289	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_019768	Enterobacteria phage HK106, complete genome	30695-30726	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682373	Escherichia phage PA5, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	EF120458	Enterobacteria phage HK542 hypothetical protein (HK542c101), hypothetical protein (HK542c102), antitermination protein (N), hypothetical protein (HK542c104), hypothetical protein (HK542c105), prophage repressor (cI), repressor (cro), and transcriptional activator (cII) genes, complete cds	2583-2614	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	LP928576	Sequence 36 from Patent EP3224353	37258-37289	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_049953	Escherichia phage Lambda_ev099 genome assembly, chromosome: 1	36197-36228	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	MN855678	Bacteriophage sp. isolate 181, complete genome	11180-11211	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	AP012538	Stx2-converting phage Stx2a_WGPS4 proviral DNA, complete genome	10396-10427	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682378	Escherichia phage PA18, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	LF148785	JP 2016510593-A/7: ENZYME STALLING METHOD	37258-37289	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_011357	Stx2-converting phage 1717, complete prophage genome	11073-11104	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	NC_027339	Enterobacteria phage SfI, complete genome	29814-29845	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682390	Escherichia phage PA50, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	AP012530	Stx2-converting phage Stx2a_F349 proviral DNA, complete genome	10417-10448	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	EF120460	Enterobacteria phage mEp234 conserved hypothetical protein (mEp23401), antitermination protein (N), hypothetical protein (mEp23403), putative hif-contiguous protein B (hicB), putative hif-contiguous protein A (hicA), prophage repressor (cI), repressor (cro), and transcriptional activator (cII) genes, complete cds	2777-2808	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	KP682392	Escherichia phage PA52, complete genome	10932-10963	8	0.75
NZ_CP013990_7	7.23\|3586771\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586771-3586802	32	LR597643	Escherichia phage Lambda_ev017 genome assembly, chromosome: 1	39052-39083	8	0.75
NZ_CP013990_7	7.27\|3587013\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587013-3587044	32	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	303318-303349	8	0.75
NZ_CP013990_7	7.30\|3587193\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587193-3587224	32	NC_021793	Cellulophaga phage phi48:2, complete genome	5456-5487	8	0.75
NZ_CP013990_7	7.2\|3585509\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3585509-3585540	32	NZ_CP023707	Edwardsiella tarda strain KC-Pc-HB1 plasmid pEh-Pc1, complete sequence	67374-67405	9	0.719
NZ_CP013990_7	7.4\|3585629\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3585629-3585660	32	NZ_CP039641	Azospirillum sp. TSH100 plasmid p2, complete sequence	9659-9690	9	0.719
NZ_CP013990_7	7.12\|3586110\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3586110-3586141	32	NZ_LR723674	Rhizobium flavum strain YW14 plasmid 5	27539-27570	9	0.719
NZ_CP013990_7	7.31\|3587253\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587253-3587284	32	KU310944	Pseudomonas phage YMC11/06/C171_PPU_BP, complete genome	35546-35577	9	0.719
NZ_CP013990_7	7.30\|3587193\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587193-3587224	32	NZ_CP026271	Klebsiella oxytoca strain KONIH4 plasmid pKOX-4655, complete sequence	26227-26258	10	0.688
NZ_CP013990_7	7.30\|3587193\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587193-3587224	32	NZ_CP026174	Klebsiella pneumoniae strain KPNIH50 plasmid pKPN-0d7f, complete sequence	39496-39527	10	0.688
NZ_CP013990_7	7.30\|3587193\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587193-3587224	32	NZ_CP026181	Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-6a23, complete sequence	5504-5535	10	0.688
NZ_CP013990_7	7.30\|3587193\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587193-3587224	32	NZ_CP011621	Klebsiella pneumoniae strain CAV1344 plasmid pCAV1344-78, complete sequence	4327-4358	10	0.688
NZ_CP013990_7	7.30\|3587193\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587193-3587224	32	NZ_CP024544	Klebsiella pneumoniae strain INF042 plasmid unnamed2, complete sequence	16718-16749	10	0.688
NZ_CP013990_7	7.30\|3587193\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587193-3587224	32	NZ_MF042354	Klebsiella pneumoniae strain 6TM plasmid pNDM_6TM, complete sequence	109144-109175	10	0.688
NZ_CP013990_7	7.30\|3587193\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587193-3587224	32	NZ_MF042353	Klebsiella pneumoniae strain 1TM plasmid pNDM_1TM, complete sequence	108605-108636	10	0.688
NZ_CP013990_7	7.30\|3587193\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587193-3587224	32	NZ_CP026371	Klebsiella quasipneumoniae strain A708 plasmid pA708-3, complete sequence	50906-50937	10	0.688
NZ_CP013990_7	7.31\|3587253\|32\|NZ_CP013990\|PILER-CR,CRISPRCasFinder,CRT	3587253-3587284	32	NZ_KM406416	Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence	88800-88831	10	0.688

1. spacer 7.14|3586230|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_019522 (Pectobacterium phage ZF40, complete genome) position: , mismatch: 0, identity: 1.0

gcggggtttttgctttccggcgatacgacagg	CRISPR spacer
gcggggtttttgctttccggcgatacgacagg	Protospacer
********************************

2. spacer 7.2|3585509|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026759 (Klebsiella aerogenes strain AR_0062 plasmid tig00000059_pilon, complete sequence) position: , mismatch: 4, identity: 0.875

tgaaaccgtgggtgtgtccgtgggtgcgtaat	CRISPR spacer
ttaaaccgtgggtgtgtccgtggaagcgtaac	Protospacer
* *********************. ******.

3. spacer 7.2|3585509|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021854 (Proteus mirabilis strain AR_0156 plasmid unitig_2, complete sequence) position: , mismatch: 4, identity: 0.875

tgaaaccgtgggtgtgtccgtgggtgcgtaat	CRISPR spacer
ttaaaccgtgggtgtgtccgtggaagcgtaac	Protospacer
* *********************. ******.

4. spacer 7.2|3585509|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021695 (Proteus mirabilis strain AR_0155 plasmid tig00000123, complete sequence) position: , mismatch: 4, identity: 0.875

tgaaaccgtgggtgtgtccgtgggtgcgtaat	CRISPR spacer
ttaaaccgtgggtgtgtccgtggaagcgtaac	Protospacer
* *********************. ******.

5. spacer 7.14|3586230|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to MK448234 (Klebsiella phage ST11-VIM1phi8.2, complete genome) position: , mismatch: 4, identity: 0.875

gcggggtttttgctttccggcgatacgacagg	CRISPR spacer
ttgggctttttgctttccggcgacacgacagg	Protospacer
 .*** *****************.********

6. spacer 7.14|3586230|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 4, identity: 0.875

gcggggtttttgctttccggcgatacgacagg	CRISPR spacer
ttgggctttttgctttccggcgacacgacagg	Protospacer
 .*** *****************.********

7. spacer 7.14|3586230|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 4, identity: 0.875

gcggggtttttgctttccggcgatacgacagg	CRISPR spacer
ttgggctttttgctttccggcgacacgacagg	Protospacer
 .*** *****************.********

8. spacer 2.1|1038081|33|NZ_CP013990|CRISPRCasFinder matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

ctgtcagcgccaggtgctggcgtagccggggtg	CRISPR spacer
cttgctgcgccaggtgctggcgcagccgggctt	Protospacer
**  * ****************.******* *

9. spacer 7.29|3587133|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 6, identity: 0.812

ggacgtttacagcgaaatgggcgcggccttcg	CRISPR spacer
ggatctgaacagcgatatgggcgaggccttcg	Protospacer
***. *  ******* ******* ********

10. spacer 3.1|1109614|30|NZ_CP013990|CRISPRCasFinder matches to NC_007491 (Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence) position: , mismatch: 7, identity: 0.767

cgcacctgcgctcaggctgaagccgccgtt	CRISPR spacer
gagaattgcgctcaggctgaagccgccggc	Protospacer
 . * .********************** .

11. spacer 3.1|1109614|30|NZ_CP013990|CRISPRCasFinder matches to NZ_CP050125 (Rhodococcus erythropolis strain KB1 plasmid plas1, complete sequence) position: , mismatch: 7, identity: 0.767

cgcacctgcgctcaggctgaagccgccgtt	CRISPR spacer
gagaattgcgctcaggctgaagccgccggc	Protospacer
 . * .********************** .

12. spacer 3.1|1109614|30|NZ_CP013990|CRISPRCasFinder matches to NZ_CP034156 (Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

cgcacctgcgctcaggctgaagccgccgtt	CRISPR spacer
gagaattgcgctcaggctgaagccgccggc	Protospacer
 . * .********************** .

13. spacer 3.1|1109614|30|NZ_CP013990|CRISPRCasFinder matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 7, identity: 0.767

cgcacctgcgctcaggctgaagccgccgtt	CRISPR spacer
ggtgccgaggctcaggctggagccgccgtt	Protospacer
 *..** . **********.**********

14. spacer 3.1|1109614|30|NZ_CP013990|CRISPRCasFinder matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

cgcacctgcgctcaggctgaagccgccgtt	CRISPR spacer
ggtgccgaggctcaggctggagccgccgtt	Protospacer
 *..** . **********.**********

15. spacer 3.1|1109614|30|NZ_CP013990|CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cgcacctgcgctcaggctgaagccgccgtt	CRISPR spacer
atcggcggcgctgaggctgaagccgccatt	Protospacer
  *. * ***** **************.**

16. spacer 3.1|1109614|30|NZ_CP013990|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

cgcacctgcgctcaggctgaagccgccgtt	CRISPR spacer
ggtgccgaggctcaggctggagccgccgtt	Protospacer
 *..** . **********.**********

17. spacer 3.1|1109614|30|NZ_CP013990|CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 7, identity: 0.767

cgcacctgcgctcaggctgaagccgccgtt	CRISPR spacer
ggtgccgaggctcaggctggagccgccgtt	Protospacer
 *..** . **********.**********

18. spacer 3.1|1109614|30|NZ_CP013990|CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 7, identity: 0.767

cgcacctgcgctcaggctgaagccgccgtt	CRISPR spacer
ggtgccgaggctcaggctggagccgccgtt	Protospacer
 *..** . **********.**********

19. spacer 7.2|3585509|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_011314 (Aliivibrio salmonicida LFI1238 plasmid pVSAL320, complete sequence) position: , mismatch: 7, identity: 0.781

tgaaaccgtgggtgtgtccgtgggtgcgtaat	CRISPR spacer
tgaaaccgtgggcatgtccgtgggatagaact	Protospacer
************..**********   * * *

20. spacer 7.2|3585509|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034239 (Aliivibrio salmonicida strain VS224 plasmid pVS320-224, complete sequence) position: , mismatch: 7, identity: 0.781

tgaaaccgtgggtgtgtccgtgggtgcgtaat	CRISPR spacer
tgaaaccgtgggcatgtccgtgggatagaact	Protospacer
************..**********   * * *

21. spacer 7.14|3586230|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH909329 (Leclercia adecarboxylata strain 150707804 plasmid p707804-3FII, complete sequence) position: , mismatch: 7, identity: 0.781

gcggggtttttgctttccggcgatacgacagg	CRISPR spacer
cggttttttttgatttccggcgatactacagg	Protospacer
  *   ****** ************* *****

22. spacer 7.30|3587193|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to MH617214 (Microviridae sp. isolate cthh943, complete genome) position: , mismatch: 7, identity: 0.781

ctgatgctgcgttttccgggctttcccctgta	CRISPR spacer
ctctggctgcgtttttcgggctttcccctacc	Protospacer
**   **********.*************..

23. spacer 7.3|3585569|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 8, identity: 0.75

gatcttccgggcatcgctcatgct-----cattggta	CRISPR spacer
gatcttcccggcatcgctcatcctgccgccgt-----	Protospacer
******** ************ **     *.*

24. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_025021 (Escherichia coli plasmid pGBG1) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

25. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

26. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044141 (Escherichia coli O157 strain AR-0430 plasmid pAR-0430-4) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

27. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to EF120455 (Enterobacteria phage HK544 restriction alleviation (ral) gene, partial cds; and antitermination protein (N), conserved hypothetical protein (HK544c103), conserved hypothetical protein (HK544c104), prophage repressor (cI), repressor (cro), and transcriptional activator (cII) genes, complete cds) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

28. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to LQ940956 (Sequence 13 from Patent WO2014135838) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

29. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to HV030377 (JP 2011056337-A/1: A method of operation for a chained molecule) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

30. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to LC487997 (Stx2-converting phage Stx2a F578 genes for Shiga toxin 2 production region, complete sequence) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

31. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682385 (Escherichia phage PA33, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

32. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to CQ832099 (Sequence 8 from Patent WO2004056986) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

33. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to AP012539 (Stx2-converting phage Stx2a_WGPS6 proviral DNA, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

34. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682382 (Escherichia phage PA29, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

35. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682389 (Escherichia phage PA45, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

36. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to LG109818 (KR 1020150126026-A/13: ENZYME STALLING METHOD) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

37. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682383 (Escherichia phage PA30, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

38. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_049949 (Escherichia phage Lambda_ev207 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

39. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_004914 (Stx2 converting phage II DNA, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

40. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to MN855687 (Bacteriophage sp. isolate 528, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

41. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to DD017402 (METHOD FOR DETECTING NUCLEIC ACIDS) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

42. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to EF120461 (Enterobacteria phage HK106 conserved hypothetical protein (HK10601), antitermination protein (N), hypothetical protein (HK10603), putative hif-contiguous protein B (hicB), putative hif-contiguous protein A (hicA), prophage repressor (cI), repressor (cro), and transcriptional activator (cII) genes, complete cds) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

43. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to FB325579 (Sequence 7 from Patent EP1854889) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

44. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to HZ164698 (WO 2015111248-A/3: Method for Preparation of Unit DNA Composition and Method for Production of DNA-linked body) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

45. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682375 (Escherichia phage PA11, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

46. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to EF120459 (Enterobacteria phage CL707 IS10 transposase (IS10 transposase) gene, partial cds; and hypothetical protein (CL70702), antitermination protein (N), hypothetical protein (CL70704), prophage repressor (cI), repressor (cro), and transcriptional activator (cII) genes, complete cds) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

47. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682387 (Escherichia phage PA42, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

48. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to FM180578 (Enterobacteria phage 2851, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

49. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KJ909655 (Escherichia Stx1-converting recombinant phage HUN/2013, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

50. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682384 (Escherichia phage PA32, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

51. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682386 (Escherichia phage PA36, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

52. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_049952 (Escherichia virus Lambda_2B8 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

53. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682376 (Escherichia phage PA12, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

54. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to AP000422 (Enterobacteria phage VT2-Sakai genomic DNA, prophage inserted region in Escherichia coli O157:H7) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

55. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to FJ188381 (Stx2-converting phage 1717, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

56. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to MC431151 (JP 2019022513-A/3: Method for Preparation of Unit DNA Composition and Method for Production of DNA-linked body) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

57. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682391 (Escherichia phage PA51, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

58. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to LC487996 (Stx2-converting phage Stx2a 981509 genes for Shiga toxin 2 production region, complete sequence) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

59. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682388 (Escherichia phage PA44, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

60. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KT232076 (UNVERIFIED: Enterobacteria phage lambda, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

61. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to AF069529 (Bacteriophage HK97, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

62. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_002167 (Enterobacteria phage HK97, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

63. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_001416 (Enterobacteria phage lambda, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

64. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to CS123581 (Sequence 8 from Patent WO2005059149) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

65. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682372 (Escherichia phage PA4, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

66. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_011356 (Enterobacteria phage YYZ-2008, complete prophage genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

67. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_019715 (Enterobacterial phage mEp234, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

68. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to JQ086374 (Enterobacteria phage HK544, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

69. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to EF120457 (Enterobacteria phage HK244 hypothetical protein (HK24402) gene, partial cds; and hypothetical protein (HK24401), antitermination protein (N), hypothetical protein (HK24404), hypothetical protein (HK24405), prophage repressor (cI), repressor (cro), and transcriptional activator (cII) genes, complete cds) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

70. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682377 (Escherichia phage PA16, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

71. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_049944 (Stx2-converting phage Stx2a_WGPS8 proviral DNA, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

72. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to MA017622 (JP 2017536831-A/36: TARGETED ELIMINATION OF BACTERIAL GENES) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

73. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_000902 (Enterobacteria phage VT2-Sakai, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

74. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_049954 (Escherichia virus Lambda_2G7b genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

75. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to AP000363 (Enterobacteria phage VT2-Sakai proviral DNA, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

76. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to MP278244 (Sequence 3 from Patent EP3495482) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

77. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to FJ184280 (Enterobacteria phage YYZ-2008, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

78. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682380 (Escherichia phage PA27, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

79. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to LR597639 (Escherichia phage Lambda_ev243 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

80. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to AP005153 (Stx1 converting phage DNA, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

81. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KF241843 (Escherichia phage phi-8 mobile element protein (gam), Kil protein, regulatory protein, single strand DNA-binding protein, hypothetical protein, putative anti-termination protein N, hypothetical proteins, putative cI repressor protein (cI), and putative Cro repressor protein (cro) genes, complete cds) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

82. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_019769 (Enterobacteria phage HK542, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

83. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to AJ413274 (Bacteriophage Nil2 proviral n gene, ORF22, ci gene, cro gene, cii gene, ORF53, o gene, p gene, ninA gene, ORF29, ORF30, ORF31, ninB gene, ORF175, ninE gene, ORF23, ORF57, antA gene, antB gene, roi gene, ninG gene, ninI gene, q gene, stx2A gene, stx2B gene, ileZ gene, argN gene and argO gene) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

84. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682379 (Escherichia phage PA21, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

85. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to DJ347897 (Method for preparation of artificial positive control DNAs used for multiplex PCR) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

86. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_019768 (Enterobacteria phage HK106, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

87. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682373 (Escherichia phage PA5, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

88. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to EF120458 (Enterobacteria phage HK542 hypothetical protein (HK542c101), hypothetical protein (HK542c102), antitermination protein (N), hypothetical protein (HK542c104), hypothetical protein (HK542c105), prophage repressor (cI), repressor (cro), and transcriptional activator (cII) genes, complete cds) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

89. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to LP928576 (Sequence 36 from Patent EP3224353) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

90. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_049953 (Escherichia phage Lambda_ev099 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

91. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to MN855678 (Bacteriophage sp. isolate 181, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

92. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to AP012538 (Stx2-converting phage Stx2a_WGPS4 proviral DNA, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

93. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682378 (Escherichia phage PA18, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

94. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to LF148785 (JP 2016510593-A/7: ENZYME STALLING METHOD) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

95. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_011357 (Stx2-converting phage 1717, complete prophage genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

96. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_027339 (Enterobacteria phage SfI, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

97. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682390 (Escherichia phage PA50, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

98. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to AP012530 (Stx2-converting phage Stx2a_F349 proviral DNA, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

99. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to EF120460 (Enterobacteria phage mEp234 conserved hypothetical protein (mEp23401), antitermination protein (N), hypothetical protein (mEp23403), putative hif-contiguous protein B (hicB), putative hif-contiguous protein A (hicA), prophage repressor (cI), repressor (cro), and transcriptional activator (cII) genes, complete cds) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

100. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KP682392 (Escherichia phage PA52, complete genome) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

101. spacer 7.23|3586771|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to LR597643 (Escherichia phage Lambda_ev017 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.75

gcacgcactttaccaacaacggaacaactggc	CRISPR spacer
gcgataactttccccacaacggaacaactctc	Protospacer
**.   ***** ** **************  *

102. spacer 7.27|3587013|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 8, identity: 0.75

gctgcgcggggatggattgcaaggcatattcc	CRISPR spacer
gcggcgcggggatggattgcaaggtgtcggtg	Protospacer
** *********************..*   .

103. spacer 7.30|3587193|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NC_021793 (Cellulophaga phage phi48:2, complete genome) position: , mismatch: 8, identity: 0.75

ctgatgctgcgttttccgggctttcccctgta	CRISPR spacer
aagatgctgcgttttccgctctttctgttgtt	Protospacer
  ****************  *****. .***

104. spacer 7.2|3585509|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023707 (Edwardsiella tarda strain KC-Pc-HB1 plasmid pEh-Pc1, complete sequence) position: , mismatch: 9, identity: 0.719

tgaaaccgtgggtgtgtccgtgggtgcgtaat	CRISPR spacer
tgaagccgtgggtgtgtccatgggataggcgc	Protospacer
****.**************.****   *  ..

105. spacer 7.4|3585629|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039641 (Azospirillum sp. TSH100 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

gcgtgccggtaacttggccggagccgacccac	CRISPR spacer
ccttgccggtgacctggccggagccgctggcc	Protospacer
 * *******.**.************ .   *

106. spacer 7.12|3586110|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR723674 (Rhizobium flavum strain YW14 plasmid 5) position: , mismatch: 9, identity: 0.719

gggatttcattgccgcaaagaccagtgttttt	CRISPR spacer
aggatttcattgccgcaaatgccatttcgggt	Protospacer
.****************** .*** * .   *

107. spacer 7.31|3587253|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to KU310944 (Pseudomonas phage YMC11/06/C171_PPU_BP, complete genome) position: , mismatch: 9, identity: 0.719

tcggttccacatgtccagcacaccgccagtac	CRISPR spacer
gatgtggtacatgtccagcaccccgccattaa	Protospacer
   **  .************* ****** **

108. spacer 7.30|3587193|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026271 (Klebsiella oxytoca strain KONIH4 plasmid pKOX-4655, complete sequence) position: , mismatch: 10, identity: 0.688

ctgatgctgcgttttccgggctttcccctgta	CRISPR spacer
gatatgctgcgttttccgggcgatccggttcg	Protospacer
   ******************  ***  * ..

109. spacer 7.30|3587193|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026174 (Klebsiella pneumoniae strain KPNIH50 plasmid pKPN-0d7f, complete sequence) position: , mismatch: 10, identity: 0.688

ctgatgctgcgttttccgggctttcccctgta	CRISPR spacer
gatatgctgcgttttccgggcgatccggttcg	Protospacer
   ******************  ***  * ..

110. spacer 7.30|3587193|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026181 (Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-6a23, complete sequence) position: , mismatch: 10, identity: 0.688

ctgatgctgcgttttccgggctttcccctgta	CRISPR spacer
gatatgctgcgttttccgggcgatccggttcg	Protospacer
   ******************  ***  * ..

111. spacer 7.30|3587193|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011621 (Klebsiella pneumoniae strain CAV1344 plasmid pCAV1344-78, complete sequence) position: , mismatch: 10, identity: 0.688

ctgatgctgcgttttccgggctttcccctgta	CRISPR spacer
gatatgctgcgttttccgggcgatccggttcg	Protospacer
   ******************  ***  * ..

112. spacer 7.30|3587193|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024544 (Klebsiella pneumoniae strain INF042 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

ctgatgctgcgttttccgggctttcccctgta	CRISPR spacer
gatatgctgcgttttccgggcgatccggttcg	Protospacer
   ******************  ***  * ..

113. spacer 7.30|3587193|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF042354 (Klebsiella pneumoniae strain 6TM plasmid pNDM_6TM, complete sequence) position: , mismatch: 10, identity: 0.688

ctgatgctgcgttttccgggctttcccctgta	CRISPR spacer
gatatgctgcgttttccgggcgatccggttcg	Protospacer
   ******************  ***  * ..

114. spacer 7.30|3587193|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF042353 (Klebsiella pneumoniae strain 1TM plasmid pNDM_1TM, complete sequence) position: , mismatch: 10, identity: 0.688

ctgatgctgcgttttccgggctttcccctgta	CRISPR spacer
gatatgctgcgttttccgggcgatccggttcg	Protospacer
   ******************  ***  * ..

115. spacer 7.30|3587193|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026371 (Klebsiella quasipneumoniae strain A708 plasmid pA708-3, complete sequence) position: , mismatch: 10, identity: 0.688

ctgatgctgcgttttccgggctttcccctgta	CRISPR spacer
gatatgctgcgttttccgggcgatccggttcg	Protospacer
   ******************  ***  * ..

116. spacer 7.31|3587253|32|NZ_CP013990|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 10, identity: 0.688

tcggttccacatgtccagcacaccgccagtac	CRISPR spacer
ctgtttccacatgtccagcagactgccgtcca	Protospacer
..* **************** **.***. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

634038 : 722212

Salmonella_phage(74.47%)

integrase,terminase,capsid,holin,plate,head,tRNA,tail,lysis,portal

attL 680886:680937|attR 715779:715830

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032614329.1\|634038_634437_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_032614327.1\|634439_634745_-	DUF883 family protein	NA	NA	NA	NA
WP_032614325.1\|634773_635142_-	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_032614323.1\|635297_635678_-	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_059307126.1\|635682_636345_-	DedA family protein	NA	NA	NA	NA
WP_059307127.1\|636696_637473_-	transcriptional regulator ExuR	NA	NA	NA	NA
WP_032614319.1\|637648_638947_-	MFS transporter	NA	NA	NA	NA
WP_032614318.1\|639426_640839_+	glucuronate isomerase	NA	NA	NA	NA
WP_059307128.1\|640857_642345_+	altronate dehydratase	NA	NA	NA	NA
WP_059307129.1\|642421_643663_-	serine/threonine transporter SstT	NA	NA	NA	NA
WP_059307130.1\|643902_644871_-	TerC family protein	A0A291LBC5	Escherichia_phage	2.1e-37	34.4
WP_032614310.1\|645149_646148_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_032614308.1\|646218_646707_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_059307131.1\|646917_648054_+	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
WP_059307132.1\|648288_650310_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_059307133.1\|650865_652449_-	autoinducer-2 kinase	NA	NA	NA	NA
WP_032614299.1\|652481_653453_-	transcriptional regulator LsrR	NA	NA	NA	NA
WP_059307134.1\|653667_655155_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	F2Y302	Organic_Lake_phycodnavirus	4.3e-13	29.7
WP_059307135.1\|655151_656183_+	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_059307136.1\|656183_657167_+	autoinducer 2 import system permease LsrD	NA	NA	NA	NA
WP_059307137.1\|657163_658165_+	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_059307138.1\|658176_659064_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_032614283.1\|659060_659354_+	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_071886412.1\|659443_660823_-	putrescine aminotransferase	A0A1V0SKB7	Klosneuvirus	1.7e-32	27.8
WP_032614277.1\|661253_662774_+	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	1.9e-32	47.8
WP_032614275.1\|663110_664670_+	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-08	28.8
WP_059307139.1\|664666_665212_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_059307140.1\|665449_666214_+	siderophore-interacting protein	NA	NA	NA	NA
WP_059307141.1\|666214_667384_-	DNA repair protein	NA	NA	NA	NA
WP_059307142.1\|667622_667925_+	hypothetical protein	NA	NA	NA	NA
WP_059307143.1\|668332_668986_+	cellulose biosynthesis protein BcsO	NA	NA	NA	NA
WP_032614263.1\|668976_669783_+	cellulose synthase operon protein YhjQ	NA	NA	NA	NA
WP_059307144.1\|669803_671924_+	UDP-forming cellulose synthase catalytic subunit	NA	NA	NA	NA
WP_156424718.1\|671929_674395_+	cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB	NA	NA	NA	NA
WP_059307146.1\|674408_678275_+	cellulose biosynthesis protein BcsC	NA	NA	NA	NA
WP_032614257.1\|678274_678742_+	cellulose synthase	NA	NA	NA	NA
WP_059307147.1\|678751_679741_+	endoglucanase	NA	NA	NA	NA
WP_158251932.1\|679893_680070_+	hypothetical protein	NA	NA	NA	NA
WP_059307148.1\|680007_680445_-	hypothetical protein	NA	NA	NA	NA
680886:680937	attL	NA	NA	NA	NA
WP_059307149.1\|681182_682532_+	hypothetical protein	NA	NA	NA	NA
WP_059307150.1\|682569_683589_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	3.0e-119	61.7
WP_059307151.1\|683591_684131_-	hypothetical protein	NA	NA	NA	NA
WP_071886413.1\|684134_684785_-	phage repressor protein CI	F1BUN8	Cronobacter_phage	6.6e-27	33.5
WP_059307152.1\|684873_685110_+	hypothetical protein	NA	NA	NA	NA
WP_059307153.1\|685144_685654_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	2.3e-80	88.2
WP_071886414.1\|685661_685862_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	3.4e-27	86.2
WP_059307154.1\|685825_686167_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	3.0e-47	83.2
WP_059307155.1\|686234_686468_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	3.5e-23	77.9
WP_059307156.1\|686467_686695_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.1e-20	64.0
WP_059307157.1\|686691_687546_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	1.2e-116	72.9
WP_059307158.1\|687542_689936_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.5
WP_059307159.1\|690092_690281_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.0e-24	93.5
WP_059307160.1\|690291_690525_+	DinI family protein	A0A1S6L014	Salmonella_phage	1.5e-29	81.8
WP_059307161.1\|690594_690852_+	hypothetical protein	J9Q7T5	Salmonella_phage	7.5e-19	57.5
WP_059307162.1\|691076_692729_+	hypothetical protein	X2KLG0	Campylobacter_phage	1.5e-14	26.9
WP_059307163.1\|692758_693787_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	2.2e-178	93.8
WP_059307164.1\|693786_695553_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	95.1
WP_059307165.1\|695695_696529_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.6e-118	87.7
WP_059307166.1\|696545_697607_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	5.4e-188	94.6
WP_059307167.1\|697610_698261_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	3.3e-111	96.3
WP_059307168.1\|698354_698819_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	88.3
WP_059307169.1\|698818_699022_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.2e-32	95.5
WP_059307170.1\|699025_699241_+	hypothetical protein	E5G6N0	Salmonella_phage	3.3e-28	87.3
WP_059307171.1\|699221_699731_+	lysozyme	A0A1S6KZY9	Salmonella_phage	4.3e-90	95.3
WP_059307172.1\|699735_700113_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.8e-24	47.9
WP_167347885.1\|700109_700538_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	2.9e-63	92.9
WP_059307174.1\|700633_701065_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.2e-69	91.6
WP_059307175.1\|701057_701504_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	6.2e-61	82.4
WP_059307176.1\|701507_702536_-	hypothetical protein	NA	NA	NA	NA
WP_059307177.1\|702614_703193_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	6.8e-100	90.6
WP_059307178.1\|703189_703549_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	5.5e-52	89.1
WP_059307179.1\|703535_704444_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	7.1e-120	77.2
WP_059307180.1\|704436_704958_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.2e-58	61.3
WP_059307182.1\|707907_708324_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	5.3e-14	52.7
WP_059307183.1\|708528_709701_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.6e-209	92.6
WP_059307184.1\|709710_710226_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	1.3e-86	91.2
WP_059307185.1\|710280_710583_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	6.7e-43	95.0
WP_007848878.1\|710597_710717_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	3.3e-14	92.3
WP_059307186.1\|710709_713784_+\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	0.0e+00	76.6
WP_059307187.1\|713780_714266_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-63	83.9
WP_059307188.1\|714262_715363_+	phage late control D family protein	E5G6Q3	Salmonella_phage	6.7e-181	87.4
WP_071886516.1\|715431_715650_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	4.4e-28	79.2
WP_032614250.1\|715984_716491_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
715779:715830	attR	NA	NA	NA	NA
WP_032614248.1\|716845_718693_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_032614246.1\|718842_720588_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.3e-77	38.8
WP_001144069.1\|720746_720962_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_032614244.1\|721198_722212_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.3e-108	58.9

DBSCAN-SWA_2

1065815 : 1073263

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082697320.1\|1065815_1067963_+	formate dehydrogenase subunit alpha	A0A077SK27	Escherichia_phage	1.0e-28	24.4
WP_032613504.1\|1068406_1068619_+	RNA chaperone/antiterminator CspA	A0A1W6JNX5	Morganella_phage	1.7e-24	78.6
WP_059307331.1\|1068808_1069429_-	LysE family translocator	NA	NA	NA	NA
WP_059307332.1\|1069509_1070469_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0M4S3B4	Mycobacterium_phage	8.2e-135	71.9
WP_059307333.1\|1070478_1072623_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	8.4e-196	48.2
WP_032613493.1\|1072595_1073006_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.3e-17	43.9
WP_071886424.1\|1073002_1073263_-	glutaredoxin-like protein NrdH	A0A222ZNS6	Mycobacterium_phage	1.1e-06	42.9

DBSCAN-SWA_3

2515089 : 2532007

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059307993.1\|2515089_2517135_-	peptidyl-dipeptidase Dcp	A0A1V0SIU1	Klosneuvirus	7.6e-21	21.8
WP_032618025.1\|2517287_2518034_+	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_032618024.1\|2518125_2518812_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_032618023.1\|2518852_2519284_-	universal stress protein	A0A1W6JNV4	Morganella_phage	5.3e-17	36.6
WP_032618022.1\|2519548_2519752_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	2.6e-14	61.2
WP_059307994.1\|2519796_2521260_-	fructuronate reductase	H8ZJP8	Ostreococcus_tauri_virus	1.1e-42	30.1
WP_059307995.1\|2521541_2522921_-	MHS family MFS transporter	Q6JIH2	Burkholderia_virus	2.2e-27	25.2
WP_059307996.1\|2522974_2523988_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	3.9e-18	26.9
WP_032617959.1\|2523999_2525214_-	D-galactonate dehydratase family protein	Q6A202	Oenococcus_phage	2.8e-47	29.7
WP_032617958.1\|2525324_2525651_-	YnfA family protein	A0A218MNG8	uncultured_virus	1.4e-22	55.6
WP_059307997.1\|2525799_2526129_+	DUF1283 family protein	NA	NA	NA	NA
WP_082697367.1\|2526168_2526879_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_032617956.1\|2526985_2527291_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_059307998.1\|2527441_2529880_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	3.6e-219	49.6
WP_059307999.1\|2529890_2530508_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	4.7e-75	59.1
WP_059308000.1\|2530509_2531364_+	dimethyl sulfoxide reductase anchor subunit family protein	A0A077SK59	Escherichia_phage	5.2e-24	34.9
WP_059308001.1\|2531407_2532007_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	2.2e-29	38.7

DBSCAN-SWA_4

2594890 : 2686114

Escherichia_phage(42.0%)

terminase,protease,holin,coat,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032617890.1\|2594890_2595715_+\|protease	serine protease	NA	NA	NA	NA
WP_059308036.1\|2595716_2597879_-	EAL domain-containing protein	G3MA91	Bacillus_virus	2.8e-13	32.5
WP_032617889.1\|2597965_2598295_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_059308037.1\|2598281_2598644_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_032617887.1\|2599060_2600098_+	AI-2E family transporter	NA	NA	NA	NA
WP_059308038.1\|2600094_2601051_-	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_032617885.1\|2601054_2601618_-	DNA endonuclease SmrA	NA	NA	NA	NA
WP_059308039.1\|2601964_2602873_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_059308040.1\|2603048_2604359_+	M20 family metallo-hydrolase	NA	NA	NA	NA
WP_059308041.1\|2604358_2605804_+	amidohydrolase	NA	NA	NA	NA
WP_032617881.1\|2605840_2607367_+	p-aminobenzoyl-glutamate transporter	NA	NA	NA	NA
WP_032617880.1\|2607377_2607893_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	5.9e-23	43.7
WP_032617879.1\|2608075_2608828_+	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA
WP_032617878.1\|2608963_2609914_+	universal stress protein UspE	NA	NA	NA	NA
WP_032617877.1\|2609949_2611065_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_032617876.1\|2611179_2612568_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_032617875.1\|2612578_2614108_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_059308042.1\|2614644_2615598_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_059308043.1\|2615783_2617166_+	amino acid permease	NA	NA	NA	NA
WP_059308044.1\|2617204_2617927_+	dihydromonapterin reductase	NA	NA	NA	NA
WP_032617871.1\|2617923_2618259_-	GlpM family protein	NA	NA	NA	NA
WP_032617870.1\|2618387_2619104_+	two-component system response regulator RstA	NA	NA	NA	NA
WP_059308045.1\|2619245_2620265_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_156424701.1\|2620321_2621311_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_032617867.1\|2621310_2622081_+	ABC transporter ATP-binding protein	R4TX06	Phaeocystis_globosa_virus	1.9e-09	28.1
WP_059308047.1\|2622160_2623459_+	two-component system sensor histidine kinase RstB	W8CYF6	Bacillus_phage	1.4e-15	23.9
WP_059308048.1\|2623532_2624462_+	DNA replication terminus site-binding protein	NA	NA	NA	NA
WP_059308049.1\|2624462_2625854_-	class II fumarate hydratase	NA	NA	NA	NA
WP_059308050.1\|2626018_2627665_-	fumarate hydratase	NA	NA	NA	NA
WP_059308051.1\|2627865_2629038_+	mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_059308052.1\|2629139_2630705_+	YdgA family protein	NA	NA	NA	NA
WP_032617860.1\|2630783_2631812_-	Mal regulon transcriptional regulator MalI	NA	NA	NA	NA
WP_032617859.1\|2631990_2633583_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA
WP_059308053.1\|2633631_2634804_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_059308054.1\|2635353_2636196_-	hypothetical protein	NA	NA	NA	NA
WP_059308055.1\|2636693_2637011_-	hypothetical protein	K7PGV5	Enterobacterial_phage	3.3e-16	48.0
WP_156424702.1\|2637597_2638284_+	hypothetical protein	NA	NA	NA	NA
WP_059308057.1\|2638306_2639305_-\|tail	tail fiber domain-containing protein	O64338	Escherichia_phage	2.5e-41	48.3
WP_059308058.1\|2639316_2639619_-	hypothetical protein	NA	NA	NA	NA
WP_059308059.1\|2639618_2641280_-	hypothetical protein	A0A0F7L427	uncultured_marine_virus	1.5e-27	37.4
WP_082697335.1\|2641352_2646365_-	DUF1983 domain-containing protein	G8C7R4	Escherichia_phage	5.1e-10	35.5
WP_059308060.1\|2646420_2647014_-\|tail	tail assembly protein	G8C7R3	Escherichia_phage	1.4e-89	87.5
WP_059308061.1\|2647001_2647733_-	C40 family peptidase	G8C7R2	Escherichia_phage	1.5e-141	91.3
WP_059308062.1\|2647745_2648516_-\|tail	phage minor tail protein L	G8C7R1	Escherichia_phage	1.1e-132	87.5
WP_059308063.1\|2648515_2648866_-\|tail	phage tail protein	G8C7R0	Escherichia_phage	9.8e-54	91.4
WP_059309113.1\|2649118_2649517_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	7.8e-15	38.3
WP_059308064.1\|2649778_2650261_-	hypothetical protein	M9NZH8	Enterobacteria_phage	1.0e-40	57.9
WP_059308065.1\|2650362_2653410_-\|tail	phage tail tape measure protein	G8C7Q6	Escherichia_phage	0.0e+00	70.4
WP_059308066.1\|2653409_2653697_-	DUF1799 domain-containing protein	I6PD79	Cronobacter_phage	7.9e-17	60.0
WP_059308067.1\|2653714_2654053_-	hypothetical protein	G8C7Q5	Escherichia_phage	1.3e-50	83.9
WP_059308068.1\|2654117_2654321_-	hypothetical protein	NA	NA	NA	NA
WP_059308069.1\|2654464_2655397_-	immunoglobulin domain-containing protein	G8C7Q3	Escherichia_phage	1.0e-158	94.2
WP_059308070.1\|2655443_2655893_-	DUF4128 domain-containing protein	G8C7Q2	Escherichia_phage	8.4e-74	91.9
WP_059308071.1\|2655882_2656482_-	hypothetical protein	G8C7Q1	Escherichia_phage	1.3e-98	88.9
WP_059308072.1\|2656484_2656838_-	hypothetical protein	G8C7Q0	Escherichia_phage	1.6e-51	89.7
WP_059308073.1\|2656839_2657322_-	hypothetical protein	G8C7P9	Escherichia_phage	6.7e-77	83.8
WP_059308074.1\|2657324_2657546_-	hypothetical protein	G8C7P8	Escherichia_phage	1.0e-19	72.6
WP_059308075.1\|2657586_2658723_-\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	1.9e-194	92.3
WP_059308076.1\|2658739_2659492_-	hypothetical protein	G8C7P6	Escherichia_phage	8.4e-127	92.4
WP_156424703.1\|2659627_2659813_-	hypothetical protein	NA	NA	NA	NA
WP_059308077.1\|2661538_2662942_-	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	8.1e-240	90.1
WP_059308078.1\|2662946_2664251_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	1.6e-149	60.5
WP_059308079.1\|2664228_2665218_-\|terminase	terminase small subunit	I6X6R5	Burkholderia_virus	1.2e-43	44.0
WP_059308080.1\|2665271_2665742_+	hypothetical protein	NA	NA	NA	NA
WP_167347882.1\|2665839_2666367_-	hypothetical protein	NA	NA	NA	NA
WP_059308082.1\|2667095_2667374_-	hypothetical protein	G8C7W1	Escherichia_phage	7.4e-20	67.1
WP_174521481.1\|2667370_2668027_-	glycoside hydrolase family 108 protein	A0A0U2I1S0	Escherichia_phage	2.1e-73	71.3
WP_032611845.1\|2667912_2668185_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_051916024.1\|2668181_2668559_-	hypothetical protein	F1C592	Cronobacter_phage	6.7e-08	40.5
WP_059308084.1\|2668905_2669370_+	hypothetical protein	NA	NA	NA	NA
WP_059308085.1\|2669668_2670499_-	antitermination protein	K7PKS8	Enterobacteria_phage	5.6e-132	84.4
WP_032611850.1\|2670495_2670636_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	2.1e-07	76.3
WP_059308086.1\|2670632_2670995_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	5.6e-52	83.1
WP_059308087.1\|2670991_2671282_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	1.4e-45	91.6
WP_059308088.1\|2671284_2671485_-	hypothetical protein	S4TNP0	Salmonella_phage	1.9e-17	57.6
WP_059308089.1\|2671489_2672086_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	1.4e-100	90.3
WP_059308090.1\|2672120_2672360_-	hypothetical protein	K7PHG9	Enterobacteria_phage	1.9e-16	55.6
WP_156424705.1\|2673114_2673555_+	hypothetical protein	NA	NA	NA	NA
WP_059308093.1\|2674152_2674395_-	hypothetical protein	NA	NA	NA	NA
WP_059308094.1\|2674387_2674651_-	DUF977 family protein	H6WRX9	Salmonella_phage	2.7e-24	66.2
WP_059308095.1\|2674664_2675417_-	ATP-binding protein	S4TNF5	Salmonella_phage	1.9e-110	77.6
WP_059309114.1\|2675413_2676337_-	replication protein	H6WRX7	Salmonella_phage	1.4e-123	74.8
WP_059308096.1\|2676418_2676988_-	hypothetical protein	NA	NA	NA	NA
WP_001568772.1\|2676999_2677218_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	1.5e-20	64.8
WP_082697338.1\|2677290_2677704_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	3.1e-46	75.8
WP_059308097.1\|2677837_2678311_+	hypothetical protein	K7PLT9	Enterobacteria_phage	4.7e-51	59.9
WP_059308098.1\|2678307_2679240_+	hypothetical protein	K7PGT0	Enterobacteria_phage	2.8e-79	50.8
WP_156424706.1\|2679539_2679872_+	hypothetical protein	NA	NA	NA	NA
WP_156424721.1\|2681417_2683268_+	PD-(D/E)XK nuclease-like domain-containing protein	H6WRX1	Salmonella_phage	2.6e-161	46.0
WP_059309116.1\|2683282_2684323_+	recombinase RecT	K7PKR8	Enterobacteria_phage	4.9e-149	73.2
WP_059308101.1\|2684360_2684600_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	2.7e-31	83.3
WP_059308102.1\|2684664_2684883_+	excisionase family protein	A0A0U2RY08	Escherichia_phage	7.8e-17	56.3
WP_059308103.1\|2684884_2686114_+	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	6.2e-111	49.8

DBSCAN-SWA_5

2858035 : 2955937

Enterobacteria_phage(26.53%)

integrase,terminase,protease,holin,tRNA,tail,portal

attL 2942068:2942085|attR 2962831:2962848

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059308190.1\|2858035_2861176_-\|tail	phage tail tape measure protein	G8C7Q6	Escherichia_phage	8.6e-165	39.7
WP_059308191.1\|2861187_2861523_-	hypothetical protein	NA	NA	NA	NA
WP_059308192.1\|2861510_2861789_-	hypothetical protein	NA	NA	NA	NA
WP_167347883.1\|2861785_2861959_-	hypothetical protein	NA	NA	NA	NA
WP_059308193.1\|2862093_2862636_-	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	3.2e-27	42.9
WP_059308194.1\|2864166_2864616_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_059308195.1\|2864804_2867564_-	TOPRIM and DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	2.0e-282	55.6
WP_059308196.1\|2867556_2867910_-	hypothetical protein	NA	NA	NA	NA
WP_059308197.1\|2867906_2868116_-	hypothetical protein	NA	NA	NA	NA
WP_059308198.1\|2868112_2868295_-	hypothetical protein	NA	NA	NA	NA
WP_082697343.1\|2868291_2868843_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_059308199.1\|2868835_2869630_-	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	3.3e-20	35.7
WP_156424708.1\|2869641_2870094_-	hypothetical protein	NA	NA	NA	NA
WP_059308200.1\|2870090_2870297_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_059308202.1\|2871456_2872710_-\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	3.9e-145	59.7
WP_032617683.1\|2872930_2873677_-	MipA/OmpV family protein	NA	NA	NA	NA
WP_032617681.1\|2874110_2876045_+	protein kinase YeaG	NA	NA	NA	NA
WP_032617680.1\|2876170_2877457_+	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	1.0e-10	36.3
WP_059308203.1\|2877496_2879533_-	TonB-dependent copper receptor	NA	NA	NA	NA
WP_059308204.1\|2879781_2880678_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	6.7e-14	34.2
WP_032617676.1\|2881025_2881472_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_174521483.1\|2881455_2882247_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_059308205.1\|2882343_2883531_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_032617674.1\|2883539_2884250_-	CTP synthase	NA	NA	NA	NA
WP_059308206.1\|2884388_2884733_+	DUF488 family protein	NA	NA	NA	NA
WP_032617672.1\|2884734_2885040_-	hypothetical protein	NA	NA	NA	NA
WP_059308207.1\|2885394_2886423_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	5.9e-14	29.4
WP_032617670.1\|2886467_2886566_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_032617669.1\|2886693_2886942_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_071886459.1\|2887304_2887397_+	stress response membrane protein YncL	NA	NA	NA	NA
WP_059308208.1\|2887433_2887697_-	hypothetical protein	NA	NA	NA	NA
WP_059308209.1\|2887862_2890553_-	sulfotransferase family protein	NA	NA	NA	NA
WP_167347884.1\|2890549_2900914_-	cadherin domain-containing protein	NA	NA	NA	NA
WP_082697346.1\|2900994_2902245_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_082697347.1\|2902234_2904460_-	ATP-binding cassette domain-containing protein	F2Y302	Organic_Lake_phycodnavirus	3.4e-14	36.3
WP_059308211.1\|2904459_2905647_-	TolC family protein	NA	NA	NA	NA
WP_071886461.1\|2906221_2906524_+	hypothetical protein	A0A2H4J144	uncultured_Caudovirales_phage	1.7e-06	39.2
WP_059308212.1\|2906510_2906837_+	hypothetical protein	NA	NA	NA	NA
WP_032617657.1\|2907272_2907473_+	hypothetical protein	NA	NA	NA	NA
WP_023292711.1\|2908191_2908344_-	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	3.4e-19	94.0
WP_059308213.1\|2908524_2908728_+	hypothetical protein	NA	NA	NA	NA
WP_059309124.1\|2909521_2910703_+	diguanylate phosphodiesterase	NA	NA	NA	NA
WP_059308214.1\|2911211_2911529_-	hypothetical protein	K7PGV5	Enterobacterial_phage	7.6e-21	50.0
WP_059308215.1\|2911852_2913961_-\|tail	tail fiber domain-containing protein	A0A1V0E5M2	Salmonella_phage	2.9e-31	40.3
WP_059308216.1\|2914025_2914988_-	hypothetical protein	A0A2P1CKS0	Pantoea_phage	5.9e-40	35.4
WP_059308217.1\|2914984_2918395_-	host specificity protein J	O64335	Escherichia_phage	0.0e+00	71.3
WP_059308218.1\|2918448_2919039_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	1.4e-79	79.6
WP_059309125.1\|2919099_2919513_-	hypothetical protein	G8C7Q7	Escherichia_phage	9.8e-53	65.7
WP_059308219.1\|2919542_2920253_-	C40 family peptidase	K7PGV2	Enterobacterial_phage	2.9e-129	85.6
WP_059308220.1\|2920254_2921010_-\|tail	phage minor tail protein L	K7PKU0	Enterobacteria_phage	7.7e-128	85.7
WP_059308221.1\|2921006_2921354_-\|tail	phage tail protein	K7P7G7	Enterobacteria_phage	6.1e-40	68.7
WP_059308222.1\|2921353_2923858_-\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	6.4e-296	66.3
WP_059308223.1\|2923838_2924147_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.8e-22	54.1
WP_059308224.1\|2924167_2924578_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	1.9e-19	43.1
WP_059308225.1\|2924619_2925357_-\|tail	phage tail protein	M9NYX0	Enterobacteria_phage	3.2e-94	71.4
WP_059308226.1\|2925364_2925763_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	1.2e-44	64.3
WP_059308227.1\|2925759_2926314_-\|tail	phage tail protein	K7PKQ5	Enterobacteria_phage	1.7e-44	64.0
WP_059308228.1\|2926324_2926600_-	ATP-binding protein	K7PH55	Enterobacterial_phage	3.2e-15	50.0
WP_059308229.1\|2926592_2926916_-	DUF2190 family protein	NA	NA	NA	NA
WP_156424709.1\|2926996_2929057_-\|protease	ATP-dependent Clp protease proteolytic subunit	K7PKX4	Enterobacterial_phage	0.0e+00	84.3
WP_059308231.1\|2928938_2930444_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	9.7e-215	73.3
WP_059308232.1\|2930440_2930662_-	hypothetical protein	A5LH28	Enterobacteria_phage	8.5e-19	67.6
WP_059308233.1\|2930658_2932758_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	77.3
WP_059308234.1\|2932757_2933246_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	5.8e-68	82.1
WP_059308235.1\|2933487_2933829_-	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.5e-10	37.8
WP_059308236.1\|2934488_2934686_-	hypothetical protein	K7PHC3	Enterobacterial_phage	9.8e-27	93.8
WP_059308237.1\|2935644_2936010_-	hypothetical protein	R9TPM9	Aeromonas_phage	2.3e-13	43.0
WP_059309126.1\|2935999_2936497_-	lysozyme	A0A2H4JCH1	uncultured_Caudovirales_phage	3.2e-74	77.0
WP_051916132.1\|2936504_2936735_-\|holin	class II holin family protein	A0A2H4JCI1	uncultured_Caudovirales_phage	1.3e-17	59.2
WP_059308238.1\|2937300_2937909_-	hypothetical protein	H9C175	Pectobacterium_phage	3.1e-63	62.2
WP_059308239.1\|2937922_2938939_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.0e-107	57.9
WP_071886529.1\|2938938_2939271_-	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	3.2e-38	64.8
WP_059308241.1\|2939297_2939498_-	hypothetical protein	NA	NA	NA	NA
WP_071886462.1\|2939640_2939886_-	hypothetical protein	H6WRY6	Salmonella_phage	2.8e-23	66.7
WP_059308242.1\|2939923_2940157_-	DinI family protein	K7PM44	Enterobacteria_phage	1.6e-28	77.9
WP_059309127.1\|2940729_2941812_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	2.4e-26	32.1
WP_059308243.1\|2941811_2942606_+	hypothetical protein	NA	NA	NA	NA
2942068:2942085	attL	NA	NA	NA	NA
WP_059308244.1\|2942828_2943161_-	hypothetical protein	NA	NA	NA	NA
WP_059308245.1\|2943164_2943584_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_059308246.1\|2943599_2944064_-	hypothetical protein	A0A0U2JGJ0	Escherichia_phage	6.0e-67	77.5
WP_167347890.1\|2944056_2944890_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	6.0e-49	54.0
WP_059308247.1\|2945211_2945766_-	hypothetical protein	NA	NA	NA	NA
WP_071886463.1\|2945768_2945993_-	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	5.2e-16	60.0
WP_059308248.1\|2946101_2946491_+	helix-turn-helix domain-containing protein	A0A077KGZ5	Edwardsiella_phage	6.3e-17	67.1
WP_148568966.1\|2946693_2946888_+	hypothetical protein	NA	NA	NA	NA
WP_059308249.1\|2946884_2947067_+	DUF1482 family protein	NA	NA	NA	NA
WP_059308250.1\|2947232_2947568_+	hypothetical protein	NA	NA	NA	NA
WP_174521484.1\|2947571_2947913_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_032617596.1\|2950809_2951055_+	excisionase	NA	NA	NA	NA
WP_059308252.1\|2951035_2952163_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21925	Phage_21	1.7e-126	62.6
WP_059308253.1\|2952280_2953531_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.8e-20	92.6
WP_059308254.1\|2953648_2954302_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_059308255.1\|2954312_2954786_+	NUDIX hydrolase	NA	NA	NA	NA
WP_059308256.1\|2954827_2955937_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
2962831:2962848	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013990

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection