CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009791	Xylella fastidiosa strain U24d plasmid pXF51ud, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP009790	Xylella fastidiosa strain U24d chromosome, complete genome	0 crisprs	csa3,DinG,Cas9_archaeal,DEDDh	0	0	9	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

453704 : 509908

Stenotrophomonas_phage(17.65%)

tRNA,portal,integrase,terminase,protease

attL 482907:482922|attR 501490:501505

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010892974.1\|453704_455399_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_010892975.1\|455548_455923_+	H-NS histone family protein	NA	NA	NA	NA
WP_004083585.1\|457029_457380_+	DMT family protein	NA	NA	NA	NA
WP_031336286.1\|457963_458350_-	response regulator	B5LWA6	Feldmannia_species_virus	9.6e-10	29.6
WP_031336287.1\|458442_459447_-	oxidoreductase	NA	NA	NA	NA
WP_010892980.1\|459593_460733_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_010892981.1\|460729_461593_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_031336290.1\|461752_461938_+	DUF2065 family protein	NA	NA	NA	NA
WP_031336291.1\|462130_463423_+	adenylosuccinate synthase	W5S5V7	Pithovirus	4.9e-74	37.7
WP_010892985.1\|463939_464944_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_010892986.1\|466473_466899_+	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	1.3e-18	40.2
WP_042463544.1\|466924_468130_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_023906157.1\|468116_468926_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_020851188.1\|469876_470515_+	YfgM family protein	NA	NA	NA	NA
WP_031336297.1\|470515_471751_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_010892993.1\|471776_473174_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_010892994.1\|473406_474546_-	molybdopterin-synthase adenylyltransferase MoeB	A0A1V0SIK8	Klosneuvirus	6.8e-11	28.0
WP_010892998.1\|475469_477038_+	EAL domain-containing protein	NA	NA	NA	NA
WP_010893000.1\|477555_478905_+	LOG family protein YgdH	NA	NA	NA	NA
WP_010893001.1\|479050_479563_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_031337553.1\|479559_480042_+	type IV pilus modification protein PilV	NA	NA	NA	NA
WP_023906163.1\|480038_481295_+	PilW family protein	NA	NA	NA	NA
WP_010893004.1\|481294_481789_+	fimbrial protein	NA	NA	NA	NA
WP_031337555.1\|481792_486358_+	pilus assembly protein	NA	NA	NA	NA
482907:482922	attL	NA	NA	NA	NA
WP_031337557.1\|486354_486810_+	type IV pilin protein	NA	NA	NA	NA
WP_010893008.1\|487046_488219_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	2.5e-117	53.2
WP_010893009.1\|488218_488491_-	hypothetical protein	V9IQX6	Stenotrophomonas_phage	1.7e-08	51.7
WP_010893010.1\|488512_488959_-	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	6.1e-32	51.0
WP_080507227.1\|488942_489368_-	DUF5131 family protein	NA	NA	NA	NA
WP_010893012.1\|489405_489612_-	hypothetical protein	NA	NA	NA	NA
WP_010893013.1\|489608_490154_-	hypothetical protein	Q5QF30	Pseudomonas_virus	7.2e-27	36.3
WP_042462740.1\|490150_490744_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_080507182.1\|490836_491373_-	pilin	NA	NA	NA	NA
WP_155114980.1\|491372_491513_-	hypothetical protein	NA	NA	NA	NA
WP_010893016.1\|491505_491772_-	hypothetical protein	NA	NA	NA	NA
WP_042462748.1\|491768_492047_-	hypothetical protein	NA	NA	NA	NA
WP_023907291.1\|492043_492265_-	hypothetical protein	NA	NA	NA	NA
WP_010893018.1\|492261_492711_-	hypothetical protein	NA	NA	NA	NA
WP_010893019.1\|492707_493172_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_010893020.1\|493168_493564_-	hypothetical protein	NA	NA	NA	NA
WP_010893021.1\|493560_493959_-	hypothetical protein	NA	NA	NA	NA
WP_010893023.1\|494458_494761_+	hypothetical protein	NA	NA	NA	NA
WP_042463557.1\|495064_496222_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_010893025.1\|496221_496689_+	DUF4411 family protein	NA	NA	NA	NA
WP_042463560.1\|497028_497481_-	hypothetical protein	C7BGF7	Burkholderia_phage	7.8e-11	47.1
WP_010893028.1\|497595_498027_-	transcriptional regulator	A0A2D1GNH0	Pseudomonas_phage	3.8e-15	57.4
WP_042462755.1\|498103_498400_+	transcriptional regulator	D0UIL8	Aggregatibacter_phage	1.9e-13	57.1
WP_042462759.1\|498386_498737_+	hypothetical protein	NA	NA	NA	NA
WP_042462762.1\|498794_499418_+	hypothetical protein	NA	NA	NA	NA
WP_042462765.1\|499519_499903_-	hypothetical protein	NA	NA	NA	NA
WP_010893033.1\|499901_500954_+	hypothetical protein	A0A1S5RF89	Helicobacter_phage	1.3e-11	40.5
WP_010893034.1\|500953_502420_+	virulence factor	A0A2D1GN57	Marinobacter_phage	1.3e-59	33.3
501490:501505	attR	NA	NA	NA	NA
WP_042462768.1\|502816_503425_+	hypothetical protein	A0A2I7S8M0	Vibrio_phage	8.6e-05	40.7
WP_010893036.1\|503421_505521_+\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	6.1e-74	30.6
WP_042462770.1\|505597_505810_+	hypothetical protein	NA	NA	NA	NA
WP_010893037.1\|505806_506043_+	hypothetical protein	NA	NA	NA	NA
WP_010893038.1\|506039_507602_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	5.9e-90	39.0
WP_042462775.1\|507598_509908_+\|protease	Clp protease ClpP	B7SYD7	Stenotrophomonas_phage	3.3e-81	37.6

DBSCAN-SWA_2

650430 : 735946

Xylella_phage(31.25%)

portal,tRNA,plate,capsid,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010893203.1\|650430_650667_-	hypothetical protein	C8CLF6	Xylella_phage	6.1e-07	60.8
WP_010893204.1\|650663_652082_-	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	3.3e-265	94.5
WP_042462867.1\|652145_652574_+	hypothetical protein	NA	NA	NA	NA
WP_010893206.1\|652575_652854_-	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	1.6e-43	94.5
WP_010893207.1\|652850_655031_-	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	91.9
WP_010893208.1\|655032_656544_-	hypothetical protein	C8CLG1	Xylella_phage	7.0e-173	66.4
WP_010893209.1\|656616_657183_-	DUF2815 family protein	C8CLG2	Xylella_phage	4.1e-102	96.8
WP_010893210.1\|657182_658460_-	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	7.2e-203	83.5
WP_155114982.1\|658456_658954_-	hypothetical protein	C8CLG4	Xylella_phage	2.4e-37	76.1
WP_010893212.1\|658953_659145_-	hypothetical protein	C8CLG5	Xylella_phage	1.0e-12	69.5
WP_010893213.1\|659141_659414_-	hypothetical protein	NA	NA	NA	NA
WP_010893214.1\|659445_659640_-	hypothetical protein	C8CLG6	Xylella_phage	7.9e-21	78.1
WP_010893215.1\|659636_660038_-	hypothetical protein	C8CLG7	Xylella_phage	1.7e-41	65.4
WP_010893216.1\|660037_660427_-	hypothetical protein	C8CLG8	Xylella_phage	4.8e-17	80.4
WP_010893217.1\|660423_660981_-	hypothetical protein	C8CLG9	Xylella_phage	2.1e-10	38.0
WP_155114983.1\|661327_661531_+	hypothetical protein	NA	NA	NA	NA
WP_155114984.1\|661705_662443_-	helix-turn-helix domain-containing protein	E7C9R0	Salmonella_phage	2.1e-21	33.2
WP_010893221.1\|662435_662660_+	hypothetical protein	NA	NA	NA	NA
WP_023907743.1\|662833_663325_-	hypothetical protein	A0A127KNL4	Pseudomonas_phage	1.5e-15	28.6
WP_023907741.1\|663366_663672_-	hypothetical protein	NA	NA	NA	NA
WP_042462880.1\|663799_663988_+	hypothetical protein	NA	NA	NA	NA
WP_010893226.1\|663984_664233_+	hypothetical protein	NA	NA	NA	NA
WP_042462883.1\|664293_664557_+	hypothetical protein	NA	NA	NA	NA
WP_080507192.1\|664585_664852_+	hypothetical protein	C8CLH4	Xylella_phage	1.3e-34	83.9
WP_010893228.1\|664848_665481_+	phage antirepressor	A4PE61	Ralstonia_virus	1.9e-18	43.2
WP_042462886.1\|665617_668152_+	DNA primase	C8CLH6	Xylella_phage	0.0e+00	72.4
WP_010893230.1\|668694_668892_+	hypothetical protein	NA	NA	NA	NA
WP_042463593.1\|669084_669702_+	hypothetical protein	V5YTF6	Pseudomonas_phage	2.4e-26	50.0
WP_010893231.1\|669668_670163_+	lysozyme	I2GUG4	Acinetobacter_phage	8.5e-27	50.7
WP_010893232.1\|670173_670485_+	hypothetical protein	A0A172PZR6	Pseudomonas_phage	2.0e-18	43.0
WP_042462889.1\|670474_670936_+	hypothetical protein	NA	NA	NA	NA
WP_042462892.1\|670937_671162_+	hypothetical protein	NA	NA	NA	NA
WP_042462895.1\|671334_671874_+	DNA-packaging protein	A0A193GYK5	Enterobacter_phage	1.1e-46	61.3
WP_042462898.1\|671866_673819_+\|terminase	phage terminase large subunit family protein	D5LH04	Escherichia_phage	1.7e-251	66.6
WP_010893236.1\|673822_674371_+	hypothetical protein	V5YTG8	Pseudomonas_phage	1.4e-38	50.0
WP_010893237.1\|674367_675966_+\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	3.5e-130	51.3
WP_010893238.1\|675949_677830_+\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	2.1e-166	48.9
WP_010893239.1\|677847_678108_+	hypothetical protein	NA	NA	NA	NA
WP_042462902.1\|678107_678431_+	hypothetical protein	NA	NA	NA	NA
WP_010893241.1\|678427_678949_+	hypothetical protein	D5LGZ7	Escherichia_phage	2.8e-12	33.9
WP_042462905.1\|678924_679467_+	hypothetical protein	D5LGZ6	Escherichia_phage	5.8e-37	42.9
WP_010893243.1\|679463_680051_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_010893244.1\|680055_680331_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_042463596.1\|680341_680623_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	1.2e-14	46.2
WP_042462908.1\|680830_681169_+\|plate	phage baseplate protein	A0A088FV58	Escherichia_phage	2.3e-31	59.5
WP_010893248.1\|681168_682062_+\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	2.8e-68	45.8
WP_010893249.1\|682054_682612_+\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	3.0e-52	55.6
WP_010894924.1\|682619_684212_+	hypothetical protein	V9IQX0	Stenotrophomonas_phage	9.9e-85	36.8
WP_042462912.1\|684276_685455_+\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	2.0e-138	56.1
WP_010893252.1\|685454_685964_+\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	2.0e-47	52.7
WP_010893253.1\|685966_686254_+\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	9.0e-13	43.4
WP_010893254.1\|686380_688600_+\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	7.8e-112	48.5
WP_010893255.1\|688596_689079_+\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	1.3e-27	46.0
WP_010893256.1\|689075_689294_+\|tail	tail protein	NA	NA	NA	NA
WP_010893257.1\|689284_690367_+	phage late control D family protein	A0A088FRU7	Escherichia_phage	5.7e-92	47.8
WP_010893260.1\|691458_693366_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.3e-126	37.5
WP_075584689.1\|693433_693961_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-12	32.7
WP_004090402.1\|694220_694418_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_010893263.1\|694428_694788_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_031338050.1\|695065_696061_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	2.2e-29	35.5
WP_010893265.1\|696144_698523_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_010893266.1\|698546_698846_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.6e-12	40.4
WP_031337099.1\|698826_699183_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_023908099.1\|699750_699894_-	hypothetical protein	NA	NA	NA	NA
WP_080507228.1\|700130_700730_-	hypothetical protein	NA	NA	NA	NA
WP_010893271.1\|700877_701933_+	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA
WP_010893272.1\|702718_703123_-	H-NS histone family protein	NA	NA	NA	NA
WP_010893274.1\|703401_704490_-	ribonuclease D	NA	NA	NA	NA
WP_038200859.1\|704612_706415_+	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	1.2e-25	34.4
WP_010893277.1\|706540_707398_+	virulence factor family protein	NA	NA	NA	NA
WP_010893278.1\|707463_708798_-	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	2.5e-36	34.5
WP_010893280.1\|709247_710738_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_010893281.1\|710734_711223_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_010893283.1\|713035_714895_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	4.0e-85	35.6
WP_023906990.1\|714894_715857_+	DUF1684 domain-containing protein	NA	NA	NA	NA
WP_010893285.1\|716125_716701_-	dCTP deaminase	S5VM63	Pseudomonas_phage	2.8e-69	67.7
WP_031338049.1\|717273_718059_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_010893288.1\|718055_718496_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_010893289.1\|718492_718900_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_010893290.1\|718896_719241_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010893291.1\|719234_720530_-	TIGR01244 family phosphatase	NA	NA	NA	NA
WP_042462926.1\|720955_721936_-	pteridine-dependent deoxygenase	NA	NA	NA	NA
WP_010893294.1\|722299_722569_+	acyl carrier protein	NA	NA	NA	NA
WP_010893295.1\|722543_723284_+	hypothetical protein	NA	NA	NA	NA
WP_010893297.1\|723525_723813_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_010893298.1\|723809_724790_+	acyltransferase	NA	NA	NA	NA
WP_080507193.1\|724713_725361_+	fatty acyl CoA synthetase	NA	NA	NA	NA
WP_010893299.1\|725339_725564_+	hypothetical protein	NA	NA	NA	NA
WP_010893300.1\|725556_727923_+	MMPL family transporter	NA	NA	NA	NA
WP_031338048.1\|727900_728335_+	phosphotransferase	NA	NA	NA	NA
WP_031338047.1\|728695_730789_-	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	1.0e-92	37.2
WP_010893302.1\|730795_731452_+	hypothetical protein	NA	NA	NA	NA
WP_010893304.1\|732236_734030_-	autotransporter domain-containing esterase	NA	NA	NA	NA
WP_031338046.1\|734171_734372_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_031337090.1\|734420_735215_+	thiazole synthase	NA	NA	NA	NA
WP_010893307.1\|735211_735946_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA

DBSCAN-SWA_3

1515371 : 1520416

Xylella_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010894056.1\|1515371_1515620_-	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	8.0e-34	82.9
WP_010894057.1\|1515638_1515878_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_042463158.1\|1516251_1517139_+	YdaU family protein	A0A0P0I481	Acinetobacter_phage	4.5e-18	42.7
WP_042463161.1\|1517119_1517809_+	hypothetical protein	NA	NA	NA	NA
WP_042463672.1\|1517856_1518219_+	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	2.8e-11	43.0
WP_042463164.1\|1518238_1518937_+	hypothetical protein	C8CLH7	Xylella_phage	1.8e-102	82.6
WP_010894061.1\|1519124_1519391_+	hypothetical protein	K4NX81	Burkholderia_phage	8.1e-08	40.7
WP_004085696.1\|1519377_1519716_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.0e-07	54.9
WP_042463169.1\|1519918_1520416_+	lysozyme	A0A2I7S753	Vibrio_phage	2.3e-27	51.7

DBSCAN-SWA_4

1523473 : 1543916

Haemophilus_phage(38.89%)

head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080507236.1\|1523473_1524778_+	DUF1073 domain-containing protein	H9C106	Vibrio_phage	6.9e-68	37.6
WP_004090283.1\|1524826_1525108_-	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	6.8e-13	45.2
WP_010894070.1\|1525104_1525443_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_010894071.1\|1525515_1526361_+\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	2.7e-28	33.1
WP_042463176.1\|1526360_1527551_+	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	1.9e-40	42.2
WP_010894073.1\|1527578_1528061_+	hypothetical protein	NA	NA	NA	NA
WP_010894074.1\|1528070_1529054_+	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	9.9e-51	39.3
WP_010894075.1\|1529117_1529417_+	hypothetical protein	NA	NA	NA	NA
WP_010894076.1\|1529419_1529794_+	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	1.2e-12	39.1
WP_010894077.1\|1529790_1530264_+	hypothetical protein	M4SN98	Psychrobacter_phage	6.7e-05	25.3
WP_010894078.1\|1530244_1530625_+	hypothetical protein	Q776V7	Haemophilus_phage	2.3e-16	36.5
WP_010894079.1\|1530611_1531082_+	hypothetical protein	NA	NA	NA	NA
WP_010894080.1\|1531082_1532579_+	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	7.3e-122	48.0
WP_010894081.1\|1532588_1533026_+	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	2.3e-44	62.4
WP_010894082.1\|1533022_1533445_+	hypothetical protein	NA	NA	NA	NA
WP_010894084.1\|1533592_1535482_+	hypothetical protein	D0UII2	Aggregatibacter_phage	1.2e-23	27.7
WP_042463681.1\|1535808_1536057_+	hypothetical protein	NA	NA	NA	NA
WP_010894086.1\|1536432_1536861_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_042463183.1\|1536861_1537116_-	plasmid stabilization protein	NA	NA	NA	NA
WP_010894088.1\|1537227_1537998_+	hypothetical protein	Q7Y5T0	Haemophilus_phage	6.4e-29	33.7
WP_010894089.1\|1537997_1538315_+	hypothetical protein	NA	NA	NA	NA
WP_010894090.1\|1538311_1539142_+	hypothetical protein	D0UIH8	Aggregatibacter_phage	1.4e-77	52.6
WP_010894091.1\|1539138_1539780_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.6e-33	38.5
WP_010894092.1\|1539776_1540130_+	hypothetical protein	Q7Y5S5	Haemophilus_phage	2.4e-23	47.0
WP_004085592.1\|1540185_1540479_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	6.2e-09	37.9
WP_010894094.1\|1540481_1540778_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.4e-23	53.7
WP_031336674.1\|1541378_1541825_-	hypothetical protein	NA	NA	NA	NA
WP_010894098.1\|1542066_1543044_-	hypothetical protein	NA	NA	NA	NA
WP_023906641.1\|1543040_1543916_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.3e-09	25.2

DBSCAN-SWA_5

1585966 : 1604781

Xylella_phage(35.29%)

integrase

attL 1568464:1568478|attR 1595050:1595064

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1568464:1568478	attL	NA	NA	NA	NA
WP_010894137.1\|1585966_1586986_-\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.1e-169	88.8
WP_010894138.1\|1586975_1587233_-	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	5.7e-35	82.4
WP_010894139.1\|1587251_1587707_-	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	2.4e-31	49.7
WP_080507237.1\|1587776_1588616_-	hypothetical protein	B6SD63	Bacteriophage	8.2e-22	38.2
WP_162009303.1\|1588720_1589485_-	hypothetical protein	NA	NA	NA	NA
WP_010894142.1\|1589517_1591161_-	hypothetical protein	U6C712	Ralstonia_phage	3.8e-95	37.6
WP_010894143.1\|1591157_1592084_-	phage recombination protein Bet	U6C6J0	Ralstonia_phage	5.1e-57	48.8
WP_010894144.1\|1592099_1592921_-	YfdQ family protein	I3PUY7	Vibrio_phage	6.3e-43	40.4
WP_010894145.1\|1592941_1593316_-	hypothetical protein	U5P4J6	Shigella_phage	5.6e-15	44.6
WP_010894146.1\|1593336_1593528_-	hypothetical protein	C8CLG6	Xylella_phage	1.3e-15	70.3
WP_010894147.1\|1593551_1593743_-	hypothetical protein	NA	NA	NA	NA
WP_010894148.1\|1593739_1594141_-	hypothetical protein	C8CLG7	Xylella_phage	3.3e-53	78.2
WP_010894149.1\|1594140_1594599_-	hypothetical protein	NA	NA	NA	NA
WP_080507209.1\|1594595_1595141_-	hypothetical protein	NA	NA	NA	NA
1595050:1595064	attR	NA	NA	NA	NA
WP_010894151.1\|1595532_1595721_+	antitoxin VbhA family protein	NA	NA	NA	NA
WP_010894152.1\|1595717_1596329_+	cell filamentation protein Fic	NA	NA	NA	NA
WP_042463200.1\|1596379_1597054_-	helix-turn-helix transcriptional regulator	A0A0M3LQ62	Mannheimia_phage	5.8e-18	30.1
WP_042463203.1\|1597138_1597384_+	hypothetical protein	NA	NA	NA	NA
WP_042463205.1\|1597380_1597686_-	hypothetical protein	NA	NA	NA	NA
WP_042463208.1\|1598065_1598254_+	hypothetical protein	NA	NA	NA	NA
WP_010894156.1\|1598250_1598499_+	hypothetical protein	NA	NA	NA	NA
WP_042463212.1\|1598495_1598879_+	hypothetical protein	NA	NA	NA	NA
WP_042463693.1\|1599082_1600195_+	hypothetical protein	C8CLG1	Xylella_phage	2.1e-110	59.5
WP_023906549.1\|1600191_1600500_+	DUF1376 domain-containing protein	A0A0R6PKK6	Moraxella_phage	2.1e-15	42.2
WP_080507238.1\|1600508_1601585_+	YdaU family protein	A0A142K7R2	Mycobacterium_phage	2.7e-17	60.5
WP_042463161.1\|1601565_1602255_+	hypothetical protein	NA	NA	NA	NA
WP_042463696.1\|1602302_1602665_+	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	4.3e-12	43.9
WP_042463215.1\|1602684_1603383_+	hypothetical protein	C8CLH7	Xylella_phage	1.6e-95	78.3
WP_080507210.1\|1603435_1603690_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_004085025.1\|1603686_1604022_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_042463169.1\|1604283_1604781_+	lysozyme	A0A2I7S753	Vibrio_phage	2.3e-27	51.7

DBSCAN-SWA_6

1608155 : 1630494

Haemophilus_phage(31.82%)

plate,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162261600.1\|1608155_1609142_+	DUF1073 domain-containing protein	L7TRA1	Rhizobium_phage	2.1e-45	38.7
WP_004090283.1\|1609190_1609472_-	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	6.8e-13	45.2
WP_010894070.1\|1609468_1609807_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_010894071.1\|1609879_1610725_+\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	2.7e-28	33.1
WP_042463176.1\|1610724_1611915_+	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	1.9e-40	42.2
WP_010894073.1\|1611942_1612425_+	hypothetical protein	NA	NA	NA	NA
WP_010894074.1\|1612434_1613418_+	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	9.9e-51	39.3
WP_010894075.1\|1613481_1613781_+	hypothetical protein	NA	NA	NA	NA
WP_010894076.1\|1613783_1614158_+	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	1.2e-12	39.1
WP_010894077.1\|1614154_1614628_+	hypothetical protein	M4SN98	Psychrobacter_phage	6.7e-05	25.3
WP_010894078.1\|1614608_1614989_+	hypothetical protein	Q776V7	Haemophilus_phage	2.3e-16	36.5
WP_010894079.1\|1614975_1615446_+	hypothetical protein	NA	NA	NA	NA
WP_010894080.1\|1615446_1616943_+	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	7.3e-122	48.0
WP_010894081.1\|1616952_1617390_+	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	2.3e-44	62.4
WP_010894082.1\|1617386_1617809_+	hypothetical protein	NA	NA	NA	NA
WP_010894164.1\|1617956_1619846_+	hypothetical protein	D0UII2	Aggregatibacter_phage	6.8e-24	28.0
WP_088371569.1\|1620175_1620352_+	hypothetical protein	NA	NA	NA	NA
WP_010894166.1\|1620385_1620574_+	hypothetical protein	NA	NA	NA	NA
WP_010894167.1\|1620578_1620749_-	antitoxin	NA	NA	NA	NA
WP_042463219.1\|1620801_1621077_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5SB46	Streptococcus_phage	3.5e-14	43.9
WP_031336679.1\|1621060_1621288_-	CopG family transcriptional regulator	NA	NA	NA	NA
WP_010894169.1\|1621398_1622169_+	hypothetical protein	Q7Y5T0	Haemophilus_phage	3.7e-29	33.3
WP_010894170.1\|1622168_1622486_+	hypothetical protein	NA	NA	NA	NA
WP_010894171.1\|1622482_1623313_+	hypothetical protein	D0UIH8	Aggregatibacter_phage	6.8e-77	51.8
WP_010894172.1\|1623309_1623951_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	1.3e-32	38.1
WP_010894173.1\|1623947_1624301_+	hypothetical protein	Q7Y5S5	Haemophilus_phage	2.8e-24	47.8
WP_004089254.1\|1624311_1624617_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.1e-11	43.6
WP_042463224.1\|1624613_1624916_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.4e-26	58.1
WP_042463227.1\|1625014_1626160_+\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	6.9e-96	48.4
WP_010894176.1\|1626156_1626717_+	DUF2612 domain-containing protein	D0UIH4	Aggregatibacter_phage	1.5e-32	41.9
WP_010894177.1\|1626720_1627884_+\|tail	tail fiber protein	A4PE46	Ralstonia_virus	1.4e-08	32.7
WP_010894178.1\|1627916_1628396_-	hypothetical protein	NA	NA	NA	NA
WP_010894179.1\|1628429_1629545_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_010894180.1\|1629560_1629851_-	hypothetical protein	NA	NA	NA	NA
WP_010894181.1\|1630161_1630494_+	DNA-binding transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	7.0e-17	40.7

DBSCAN-SWA_7

2006123 : 2014811

Pseudomonas_phage(33.33%)

portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031336505.1\|2006123_2006456_-	DNA-binding transcriptional regulator	A0A0P0IRJ4	Acinetobacter_phage	5.4e-17	39.8
WP_075584631.1\|2006778_2007021_+	hypothetical protein	NA	NA	NA	NA
WP_023906406.1\|2007033_2007285_+	glycine zipper family protein	NA	NA	NA	NA
WP_023906405.1\|2007379_2007679_+	hypothetical protein	NA	NA	NA	NA
WP_010894565.1\|2007729_2008122_+	hypothetical protein	NA	NA	NA	NA
WP_010894567.1\|2008457_2008970_-	hypothetical protein	A0A0E3FDC5	Synechococcus_phage	4.5e-07	47.5
WP_010894568.1\|2008962_2011788_-	hypothetical protein	J9RWA5	Pseudomonas_phage	1.1e-70	35.9
WP_010894569.1\|2011777_2012014_-	hypothetical protein	A0A0A1IV01	Pseudomonas_phage	1.6e-12	50.7
WP_052262867.1\|2012010_2012439_-	hypothetical protein	NA	NA	NA	NA
WP_023907545.1\|2012565_2012856_-	hypothetical protein	NA	NA	NA	NA
WP_010894572.1\|2013008_2013488_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	5.2e-13	32.8
WP_042463315.1\|2013484_2013721_-	hypothetical protein	NA	NA	NA	NA
WP_080507242.1\|2013797_2014811_-\|terminase	phage terminase large subunit family protein	A0A1B2LRQ2	Wolbachia_phage	9.6e-17	28.3

DBSCAN-SWA_8

2170923 : 2183105

Xylella_phage(45.45%)

integrase,tRNA

attL 2158460:2158473|attR 2193129:2193142

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2158460:2158473	attL	NA	NA	NA	NA
WP_010894729.1\|2170923_2171856_-	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	3.7e-15	36.6
WP_010894730.1\|2171855_2172650_-	ParA family protein	A0A0K2FLP4	Brevibacillus_phage	8.0e-19	29.7
WP_010894731.1\|2172948_2173902_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_010894734.1\|2174707_2175988_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.5e-95	51.2
WP_010894735.1\|2176109_2176805_+	energy transducer TonB	NA	NA	NA	NA
WP_010894736.1\|2177040_2178102_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	4.4e-97	53.5
WP_010894737.1\|2178113_2178410_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	4.5e-07	48.1
WP_080507243.1\|2178406_2178721_-	hypothetical protein	C8CLF7	Xylella_phage	8.3e-28	89.2
WP_155114997.1\|2178709_2179579_+	DNA polymerase	C8CLG0	Xylella_phage	1.6e-129	90.6
WP_081089917.1\|2179812_2180334_+	hypothetical protein	C8CLG0	Xylella_phage	1.4e-91	92.5
WP_010893206.1\|2180330_2180609_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	1.6e-43	94.5
WP_010894740.1\|2180610_2180919_-	hypothetical protein	NA	NA	NA	NA
WP_052262871.1\|2181018_2181696_+	KilA-N domain-containing protein	A0A1W6JP13	Morganella_phage	3.6e-12	42.9
WP_010894742.1\|2181692_2183105_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	1.3e-221	93.2
2193129:2193142	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2363118 : 2406302

Xylella_phage(42.86%)

portal,plate,capsid,integrase,terminase,tail

attL 2373551:2373565|attR 2407240:2407254

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010894920.1\|2363118_2363526_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_010894921.1\|2363845_2364928_-	phage late control D family protein	A0A088FRU7	Escherichia_phage	6.7e-93	48.4
WP_010893256.1\|2364918_2365137_-\|tail	tail protein	NA	NA	NA	NA
WP_010893255.1\|2365133_2365616_-\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	1.3e-27	46.0
WP_010894922.1\|2365612_2367832_-\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	1.1e-108	46.6
WP_010894923.1\|2367958_2368246_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	6.9e-13	43.4
WP_010893252.1\|2368248_2368758_-\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	2.0e-47	52.7
WP_042462912.1\|2368757_2369936_-\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	2.0e-138	56.1
WP_010894924.1\|2370000_2371593_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	9.9e-85	36.8
WP_010893249.1\|2371600_2372158_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	3.0e-52	55.6
WP_010893248.1\|2372150_2373044_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	2.8e-68	45.8
WP_042462908.1\|2373043_2373382_-\|plate	phage baseplate protein	A0A088FV58	Escherichia_phage	2.3e-31	59.5
2373551:2373565	attL	NA	NA	NA	NA
WP_010894925.1\|2373599_2373902_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA
WP_010894926.1\|2373904_2374306_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA
WP_010894927.1\|2374374_2374962_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_010894928.1\|2374958_2375501_-	hypothetical protein	D5LGZ6	Escherichia_phage	2.0e-37	42.9
WP_010893241.1\|2375476_2375998_-	hypothetical protein	D5LGZ7	Escherichia_phage	2.8e-12	33.9
WP_042462902.1\|2375994_2376318_-	hypothetical protein	NA	NA	NA	NA
WP_010893239.1\|2376317_2376578_-	hypothetical protein	NA	NA	NA	NA
WP_010893238.1\|2376595_2378476_-\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	2.1e-166	48.9
WP_010893237.1\|2378459_2380058_-\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	3.5e-130	51.3
WP_010893236.1\|2380054_2380603_-	hypothetical protein	V5YTG8	Pseudomonas_phage	1.4e-38	50.0
WP_042462898.1\|2380606_2382559_-\|terminase	phage terminase large subunit family protein	D5LH04	Escherichia_phage	1.7e-251	66.6
WP_042462895.1\|2382551_2383091_-	DNA-packaging protein	A0A193GYK5	Enterobacter_phage	1.1e-46	61.3
WP_042462892.1\|2383263_2383488_-	hypothetical protein	NA	NA	NA	NA
WP_042462889.1\|2383489_2383951_-	hypothetical protein	NA	NA	NA	NA
WP_010893232.1\|2383940_2384252_-	hypothetical protein	A0A172PZR6	Pseudomonas_phage	2.0e-18	43.0
WP_010893231.1\|2384262_2384757_-	lysozyme	I2GUG4	Acinetobacter_phage	8.5e-27	50.7
WP_042463593.1\|2384723_2385341_-	hypothetical protein	V5YTF6	Pseudomonas_phage	2.4e-26	50.0
WP_042463422.1\|2385831_2388363_-	DNA primase	C8CLH6	Xylella_phage	0.0e+00	72.0
WP_010894930.1\|2388465_2389284_-	hypothetical protein	C8CLH5	Xylella_phage	5.7e-28	59.7
WP_155115001.1\|2389782_2389944_+	hypothetical protein	NA	NA	NA	NA
WP_023907050.1\|2390071_2390317_-	hypothetical protein	NA	NA	NA	NA
WP_010894932.1\|2390377_2390626_-	hypothetical protein	NA	NA	NA	NA
WP_010894933.1\|2390622_2390811_-	hypothetical protein	NA	NA	NA	NA
WP_051372715.1\|2390864_2391089_-	hypothetical protein	NA	NA	NA	NA
WP_023907048.1\|2391190_2391496_+	hypothetical protein	NA	NA	NA	NA
WP_031338060.1\|2391492_2391693_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_010894935.1\|2391766_2392537_+	helix-turn-helix transcriptional regulator	C8CLH0	Xylella_phage	6.0e-27	34.5
WP_010894936.1\|2392705_2393245_+	hypothetical protein	NA	NA	NA	NA
WP_052262873.1\|2393281_2393593_+	hypothetical protein	NA	NA	NA	NA
WP_010894938.1\|2393780_2394236_+	hypothetical protein	NA	NA	NA	NA
WP_010894939.1\|2394341_2394731_+	hypothetical protein	C8CLG9	Xylella_phage	1.0e-06	37.5
WP_010894940.1\|2394727_2395129_+	hypothetical protein	C8CLG8	Xylella_phage	3.7e-12	70.0
WP_042463427.1\|2395188_2395671_-	hypothetical protein	NA	NA	NA	NA
WP_023907733.1\|2395970_2396162_+	hypothetical protein	NA	NA	NA	NA
WP_010894942.1\|2396185_2396377_+	hypothetical protein	C8CLG6	Xylella_phage	3.1e-17	75.0
WP_010894943.1\|2396408_2396606_+	hypothetical protein	C8CLG5	Xylella_phage	2.3e-23	90.5
WP_010894945.1\|2397097_2398375_+	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	2.6e-205	84.2
WP_010894946.1\|2398374_2398941_+	DUF2815 family protein	C8CLG2	Xylella_phage	2.7e-101	96.3
WP_010894947.1\|2399009_2400524_+	hypothetical protein	C8CLG1	Xylella_phage	9.2e-181	68.0
WP_010894948.1\|2400525_2402706_+	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	91.2
WP_010893206.1\|2402702_2402981_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	1.6e-43	94.5
WP_010894949.1\|2402982_2403378_-	hypothetical protein	NA	NA	NA	NA
WP_010894950.1\|2403462_2404881_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	5.4e-260	92.4
WP_023907056.1\|2405034_2405283_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	3.0e-33	80.5
WP_010894952.1\|2405282_2406302_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.1e-169	87.6
2407240:2407254	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage