CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP013264	Sphingobium baderi strain DE-13, complete genome	1 crisprs	csa3,DEDDh,cas3,WYL,cas2	11	8
NZ_CP013272	Sphingobium baderi strain DE-13 plasmid pDE8, complete sequence	0 crisprs	NA	0	0
NZ_CP013268	Sphingobium baderi strain DE-13 plasmid pDE4, complete sequence	0 crisprs	NA	0	0
NZ_CP013266	Sphingobium baderi strain DE-13 plasmid pDE2, complete sequence	0 crisprs	NA	0	8
NZ_CP013270	Sphingobium baderi strain DE-13 plasmid pDE6, complete sequence	0 crisprs	NA	0	0
NZ_CP013265	Sphingobium baderi strain DE-13 plasmid pDE1, complete sequence	1 crisprs	csa3	3	1
NZ_CP013271	Sphingobium baderi strain DE-13 plasmid pDE7, complete sequence	0 crisprs	NA	0	0
NZ_CP013269	Sphingobium baderi strain DE-13 plasmid pDE5, complete sequence	0 crisprs	NA	0	1
NZ_CP013267	Sphingobium baderi strain DE-13 plasmid pDE3, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 8270

Escherichia_phage(16.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004213241.1\|322_736_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001389365.1\|878_1643_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_004213238.1\|1698_2031_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_004213237.1\|2041_2290_+	mercury resistance system transport protein MerF	NA	NA	NA	NA
WP_004213235.1\|2292_3723_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.4e-45	28.7
WP_014194375.1\|3719_4361_+	organomercurial lyase MerB	NA	NA	NA	NA
WP_004213232.1\|4444_4822_+	mercuric resistance transcriptional repressor protein MerD	NA	NA	NA	NA
WP_004213231.1\|5025_5670_+	MgtC/SapB family protein	G3MA03	Bacillus_virus	5.3e-13	41.5
WP_024310574.1\|6172_6442_+	DUF3768 domain-containing protein	L7TKV8	Rhizobium_phage	2.5e-09	44.7
WP_017980876.1\|6501_6777_+	hypothetical protein	A0A2I7S8R6	Vibrio_phage	5.4e-07	55.1
WP_026151882.1\|6842_8270_+	DUF4942 domain-containing protein	A0A1I9KFG8	Aeromonas_phage	2.5e-26	43.4

DBSCAN-SWA_2

11445 : 14534

Microbacterium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_120694240.1\|11445_11907_+	hypothetical protein	A0A2R3ZZK1	Microbacterium_phage	3.3e-25	48.6
WP_017980881.1\|12389_12644_+	hypothetical protein	NA	NA	NA	NA
WP_120694238.1\|12834_13113_+	hypothetical protein	NA	NA	NA	NA
WP_017980884.1\|13607_14534_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	2.2e-60	43.5

DBSCAN-SWA_3

17716 : 23832

Morganella_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017980890.1\|17716_18094_+	hypothetical protein	Q1MVE8	Enterobacteria_phage	5.5e-34	57.4
WP_017980891.1\|18124_19387_-	Y-family DNA polymerase	A0A1W6JNT0	Morganella_phage	1.3e-71	38.0
WP_017980892.1\|19396_19834_-	hypothetical protein	A0A1W6JNS2	Morganella_phage	3.6e-13	43.1
WP_017980893.1\|19938_20229_-	hypothetical protein	NA	NA	NA	NA
WP_017980894.1\|20229_20427_-	hypothetical protein	NA	NA	NA	NA
WP_017980895.1\|20662_20926_-	hypothetical protein	NA	NA	NA	NA
WP_017980896.1\|20937_21327_-	hypothetical protein	NA	NA	NA	NA
WP_017980898.1\|21671_22304_+	recombinase family protein	E5FFF9	Burkholderia_phage	3.1e-37	46.2
WP_017980899.1\|22571_22907_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_017980900.1\|23148_23832_+	ParA family protein	A0A0A8IL09	Aurantimonas_phage	1.6e-39	43.8

DBSCAN-SWA_4

28549 : 28876

Cronobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018250481.1\|28549_28876_-	DksA/TraR family C4-type zinc finger protein	K4F9U1	Cronobacter_phage	9.3e-14	49.4

DBSCAN-SWA_5

36918 : 38028

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017980840.1\|36918_38028_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	5.0e-35	30.6

DBSCAN-SWA_6

42191 : 48075

Acidianus_filamentous_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017980845.1\|42191_44168_+	excinuclease ABC subunit UvrB	A7WKN6	Acidianus_filamentous_virus	9.7e-05	32.5
WP_033374294.1\|44259_46845_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.1e-161	33.6
WP_026151879.1\|46989_48075_+	Dyp-type peroxidase	S4VXK8	Pandoravirus	8.7e-24	29.3

DBSCAN-SWA_7

67136 : 71090

Rhodobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017980869.1\|67136_67997_+	RepB family plasmid replication initiator protein	A0A0K1Y6J9	Rhodobacter_phage	9.9e-31	32.3
WP_017980870.1\|68443_69487_+	hypothetical protein	NA	NA	NA	NA
WP_156415406.1\|69799_70375_-	DUF4158 domain-containing protein	NA	NA	NA	NA
WP_062069456.1\|70514_71090_+	recombinase family protein	A0A1S6L009	Salmonella_phage	4.3e-46	56.6

DBSCAN-SWA_8

77604 : 79869

Mycobacterium_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062069444.1\|77604_78450_-	alpha/beta hydrolase	G1DAB1	Mycobacterium_virus	2.8e-09	25.6
WP_062069465.1\|78439_79024_-	hypothetical protein	NA	NA	NA	NA
WP_062069448.1\|79107_79869_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	7.2e-17	31.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013264

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013264_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013264_1

3394477-3395699

Unclear

Consensus_repeat	Method
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	PILER-CR
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CRISPRCasFinder
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CRT

18 spacers

cas2,cas3

The CRISPR arrays of NZ_CP013264_1

>merge|NZ_CP013264|1|3394477-3395699|PILER-CR,CRISPRCasFinder,CRT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACTCGCGCGTGCGGCATCCCCTCCATGTCGCCATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACGGCCTTCCATGAGCGGTATTGATCCAAAGCATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACTGCTATGCTGCGGCACTGATTTCATCGGACATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACCCATCAGAATAGCGTCTTTCAGCAGCGCGGATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACGCGCTTCCGCCAGTTCACGCGCGCGCTGCATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACGCTTGGGCGTCAACCTCCACCTCTTACCGAATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACCCATCTGGTGCTGTCGAGCGTGGCAGTCGTATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACGCCTCAAGGCGCTCCTTTCTATGTCGTCAAATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACGAGATGACCTGCTTCCGGCTGATGGCAGCGATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACCGAAGCGGTGGGCGACCCCGGCACAGGCAAATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACCCTGCGCCCGCAGTGGCCAACCCGCCGCCAATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACTCCAATACCATTCAGGCAGTGGGCCGCGTTATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACTTGTGCTCAATGCACCTGTGCGAGGCCCTTATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACACAACGCTGAGTTCGAGACGAAATTCTTCGATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACTTGGAACATCGGTGATGTTTGTTGGGGTTAATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACCTGCGCTGGCAGGGATGCGCGGGTGTGGATATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACACGACGAAGAACTGAGGGACGATCTGACGAATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAACCGGATCGCTGCGGCATGTCGGGCAAGCGCAATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC

>NZ_CP013264|1|1|3394477-3395699|PILER-CR
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TCGCGCGTGCGGCATCCCCTCCATGTCGCC
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GGCCTTCCATGAGCGGTATTGATCCAAAGC
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TGCTATGCTGCGGCACTGATTTCATCGGAC
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CCATCAGAATAGCGTCTTTCAGCAGCGCGG
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GCGCTTCCGCCAGTTCACGCGCGCGCTGC
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GCTTGGGCGTCAACCTCCACCTCTTACCGA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CCATCTGGTGCTGTCGAGCGTGGCAGTCGT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GCCTCAAGGCGCTCCTTTCTATGTCGTCAA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GAGATGACCTGCTTCCGGCTGATGGCAGCG
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CGAAGCGGTGGGCGACCCCGGCACAGGCAA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CCTGCGCCCGCAGTGGCCAACCCGCCGCCA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TCCAATACCATTCAGGCAGTGGGCCGCGTT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TTGTGCTCAATGCACCTGTGCGAGGCCCTT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	ACAACGCTGAGTTCGAGACGAAATTCTTCG
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TTGGAACATCGGTGATGTTTGTTGGGGTTA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CTGCGCTGGCAGGGATGCGCGGGTGTGGAT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	ACGACGAAGAACTGAGGGACGATCTGACGA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CGGATCGCTGCGGCATGTCGGGCAAGCGCA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC

>NZ_CP013264|1|1|3394477-3395699|CRISPRCasFinder
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TCGCGCGTGCGGCATCCCCTCCATGTCGCC
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GGCCTTCCATGAGCGGTATTGATCCAAAGC
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TGCTATGCTGCGGCACTGATTTCATCGGAC
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CCATCAGAATAGCGTCTTTCAGCAGCGCGG
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GCGCTTCCGCCAGTTCACGCGCGCGCTGC
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GCTTGGGCGTCAACCTCCACCTCTTACCGA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CCATCTGGTGCTGTCGAGCGTGGCAGTCGT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GCCTCAAGGCGCTCCTTTCTATGTCGTCAA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GAGATGACCTGCTTCCGGCTGATGGCAGCG
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CGAAGCGGTGGGCGACCCCGGCACAGGCAA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CCTGCGCCCGCAGTGGCCAACCCGCCGCCA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TCCAATACCATTCAGGCAGTGGGCCGCGTT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TTGTGCTCAATGCACCTGTGCGAGGCCCTT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	ACAACGCTGAGTTCGAGACGAAATTCTTCG
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TTGGAACATCGGTGATGTTTGTTGGGGTTA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CTGCGCTGGCAGGGATGCGCGGGTGTGGAT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	ACGACGAAGAACTGAGGGACGATCTGACGA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CGGATCGCTGCGGCATGTCGGGCAAGCGCA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC

>NZ_CP013264|1|1|3394477-3395699|CRT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TCGCGCGTGCGGCATCCCCTCCATGTCGCC
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GGCCTTCCATGAGCGGTATTGATCCAAAGC
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TGCTATGCTGCGGCACTGATTTCATCGGAC
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CCATCAGAATAGCGTCTTTCAGCAGCGCGG
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GCGCTTCCGCCAGTTCACGCGCGCGCTGC
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GCTTGGGCGTCAACCTCCACCTCTTACCGA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CCATCTGGTGCTGTCGAGCGTGGCAGTCGT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GCCTCAAGGCGCTCCTTTCTATGTCGTCAA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	GAGATGACCTGCTTCCGGCTGATGGCAGCG
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CGAAGCGGTGGGCGACCCCGGCACAGGCAA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CCTGCGCCCGCAGTGGCCAACCCGCCGCCA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TCCAATACCATTCAGGCAGTGGGCCGCGTT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TTGTGCTCAATGCACCTGTGCGAGGCCCTT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	ACAACGCTGAGTTCGAGACGAAATTCTTCG
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	TTGGAACATCGGTGATGTTTGTTGGGGTTA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CTGCGCTGGCAGGGATGCGCGGGTGTGGAT
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	ACGACGAAGAACTGAGGGACGATCTGACGA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC	CGGATCGCTGCGGCATGTCGGGCAAGCGCA
ATCATAGCCGCTCAGAGATCGCGGTCCAGCGGCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013264.1\|WP_062066559.1\|3400133_3401408_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP013264.1\|WP_062066553.1\|3397358_3399257_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP013264.1\|WP_062066544.1\|3390752_3391766_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP013264.1\|WP_082635232.1\|3395991_3397002_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200583
NZ_CP013264.1\|WP_062066562.1\|3401404_3403558_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239163
NZ_CP013264.1\|WP_062066568.1\|3405266_3406544_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP013264.1\|WP_082635230.1\|3386413_3387166_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|286740
NZ_CP013264.1\|WP_062068909.1\|3382432_3385912_+\|transcription-repair-coupling-factor	unknown	unknown	gnl\|CDD\|224118
NZ_CP013264.1\|WP_062066547.1\|3391762_3392539_+\|NAD-kinase	unknown	unknown	gnl\|CDD\|179876
NZ_CP013264.1\|WP_062066541.1\|3390256_3390631_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013264.1\|WP_062066528.1\|3379851_3381915_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP013264.1\|WP_156415293.1\|3394098_3394404_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP013264.1\|WP_062066534.1\|3386031_3386442_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013264.1\|WP_062066556.1\|3399316_3400093_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440
NZ_CP013264.1\|WP_062066531.1\|3382059_3382323_+\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|377166
NZ_CP013264.1\|WP_062066525.1\|3378881_3379628_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013264.1\|WP_062066571.1\|3406553_3407348_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235975
NZ_CP013264.1\|WP_062066573.1\|3407561_3409919_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|224544
NZ_CP013264.1\|WP_062066585.1\|3409944_3410877_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP013264.1\|WP_062066565.1\|3403561_3405232_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|183787

Protein	Function_ID	Function_description	E-value
NZ_CP013264.1\|WP_062066559.1\|3400133_3401408_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	4.68013e-68
NZ_CP013264.1\|WP_062066553.1\|3397358_3399257_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.45069e-67
NZ_CP013264.1\|WP_062066544.1\|3390752_3391766_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	3.87312e-151
NZ_CP013264.1\|WP_082635232.1\|3395991_3397002_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200583	cd10960, CE4_NodB_like_1, Catalytic NodB homology domain of uncharacterized bacterial polysaccharide deacetylases. This family includes many uncharacterized bacterial polysaccharide deacetylases. Although their biological function still remains unknown, members in this family show high sequence homology to the catalytic NodB homology domain of Streptococcus pneumoniae polysaccharide deacetylase PgdA (SpPgdA), which is an extracellular metal-dependent polysaccharide deacetylase with de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. Like SpPgdA, this family is a member of the carbohydrate esterase 4 (CE4) superfamily.	4.52788e-90
NZ_CP013264.1\|WP_062066562.1\|3401404_3403558_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239163	cd02762, MopB_1, The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	3.15615e-105
NZ_CP013264.1\|WP_062066568.1\|3405266_3406544_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.20448e-65
NZ_CP013264.1\|WP_062068909.1\|3382432_3385912_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP013264.1\|WP_082635230.1\|3386413_3387166_+\|hypothetical-protein	gnl\|CDD\|286740	pfam09694, Gcw_chp, Bacterial protein of unknown function (Gcw_chp). This entry represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis and Ralstonia solanacearum, usually as part of a paralogous family. The function is unknown.	2.15243e-12
NZ_CP013264.1\|WP_062066547.1\|3391762_3392539_+\|NAD-kinase	gnl\|CDD\|179876	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.	1.84374e-155
NZ_CP013264.1\|WP_062066528.1\|3379851_3381915_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP013264.1\|WP_156415293.1\|3394098_3394404_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	9.46971e-23
NZ_CP013264.1\|WP_062066556.1\|3399316_3400093_-\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.28588e-61
NZ_CP013264.1\|WP_062066531.1\|3382059_3382323_+\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|377166	pfam03937, Sdh5, Flavinator of succinate dehydrogenase. This family includes the highly conserved mitochondrial and bacterial proteins Sdh5/SDHAF2/SdhE. Both yeast and human Sdh5/SDHAF2 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans. Bacterial homologs of Sdh5, termed SdhE, are functionally conserved being required for the flavinylation of SdhA and succinate dehydrogenase activity. Like Sdh5, SdhE interacts with SdhA. Furthermore, SdhE was characterized as a FAD co-factor chaperone that directly binds FAD to facilitate the flavinylation of SdhA. Phylogenetic analysis demonstrates that SdhE/Sdh5 proteins evolved only once in an ancestral alpha-proteobacteria prior to the evolution of the mitochondria and now remain in subsequent descendants including eukaryotic mitochondria and the alpha, beta and gamma proteobacteria. This family was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true. The E. coli protein, YgfY also acts as the antitoxin to the membrane-bound toxin family Cpta, pfam13166, whose E. coli member YgfX, expressed from the same operon as YgfY.	1.43537e-24
NZ_CP013264.1\|WP_062066565.1\|3403561_3405232_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|183787	PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.	9.64609e-87
NZ_CP013264.1\|WP_062066571.1\|3406553_3407348_-\|SDR-family-oxidoreductase	gnl\|CDD\|235975	PRK07231, FabG-like, SDR family oxidoreductase.	3.46365e-65
NZ_CP013264.1\|WP_062066573.1\|3407561_3409919_+\|TonB-dependent-receptor	gnl\|CDD\|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	1.02373e-28
NZ_CP013264.1\|WP_062066585.1\|3409944_3410877_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.51348e-26

>NZ_CP013264.1|WP_156415293.1|3394098_3394404_+|CRISPR-associated-endonuclease-Cas2
MWIFVMFDLPVTTREQARAATKFREFLLDEGFEKSQFSVYARFCNGKEQFETYMRRVESSLPDRGDVHILSFTDRQYENIVRFSGQRRRRQRKNPDQLALF
>NZ_CP013264.1|WP_062066547.1|3391762_3392539_+|NAD-kinase
MSGEVRRALVASPTPAAKAAEERLRATYDFVPQEQANMIVALGGDGFMLQTLHSMLESRRILPIFGMNLGTVGFLMNEWRLERLEQRMHSAKAFKVTPLRMTVDTVDGERFSIPAINEVSLLRETRQTARLEVEVNDRTVLPELVCDGVLVATPAGSTAYNLSAHGPILPLGSGLVALTPISPFRPRRWRGAILPESTTIRFTVLDPVKRPVSAVADQREVRDVARVEVAIDRATPLTLLFDPEHTLDDRIAAEQFIA
>NZ_CP013264.1|WP_062066544.1|3390752_3391766_+|GTP-3',8-cyclase-MoaA
MAMVDLSRAPMTDGLGRRIDYLRISVTDRCDLRCRYCMAERMSFLPKNQVLTLEEIALLADLFIARGIRKIRLTGGEPLVRRDMPDLVHRIGRHLGKGLDELTLTTNGMRLAGHAAALHNAGVRRINVSLDSLSPTCFAHITRGGDISKVLQGLDAAREASLAVKINMVALRGVNEHEILPMLQWCDSQGFDLTLIETMPLGDTGEDRTDHYLPLTQVMEHIGRHHVLKALPHRTGGPARYHAVEGMTARLGLITPLTNNFCADCNRMRMTCEGKIFMCLGHEDHVDFRAALREGGLDAVQPLIDRALRLKPARHDFRIGADAPAAAVNRHMSVTGG
>NZ_CP013264.1|WP_062066541.1|3390256_3390631_-|hypothetical-protein
MSGSAAPDGQRSVFILSPHDRDRLCHAVQAAGWHAIGARRSSDAPQRYLRSEAQIVLIDMREGPELEKLLTPLVPATVAGGGALIVLVDAIDTGSIPALLAAGATHFLTEPFTQASLTATLSGR
>NZ_CP013264.1|WP_082635230.1|3386413_3387166_+|hypothetical-protein
MPFTILPRIDRMDWAALACCAIAATSAAPVHAQYVNGLSATVEVASDERRRGISWSDGDPVLRGTLSLPVAEGLSLDAAAVSLWGSDRHGGADGVADVGVTYVRQVGGWRLSAEGRYHLFPGSSHQGYGELGAGAGFLIGPASIDLTANYAPTQSSIGGDNLYIAASAAIGVPGTPLTLSARIGRSSGDVDDPARAARLRPDGAYWDHGVSIDYLQDRWFAGLRYANSDIGGPGSAHTGATLIARFGLSL
>NZ_CP013264.1|WP_062066534.1|3386031_3386442_+|hypothetical-protein
MSLTLIALAAAVATHTVQIDHRGAPVEATYAARADIKTRTVGAHTPNRADMRRCHWKATVMVDRQLSHSPSLTRAIPTDREFSGSEAGACTSGRDIGVRQMAKYQDQIRVHLMTVAQQDHAPLLAELDAIYNLASN
>NZ_CP013264.1|WP_062068909.1|3382432_3385912_+|transcription-repair-coupling-factor
MTDLPKILKAKAPLTLSGVPAGFQPWLLADMARAAFGSGEGRALFIAPDDALMRAVADTAHYFAPEIEIIEIPAWDCLPYDRASPSLRSASARLAGLHRLQDTPRRPQLVVTTLNALTQRTLTPFRVRQLVAKLAPKERIAIQRLADMLQTNGYVRTDTVHDRGEFAIRGGIVDLFPGGEEQPLRLDFFGDEIETVRRFDPADQRTTGSVNGFTLLPASEALLDEETIKRFRGRYREIFGATATGDPLYQAVSEGRRLAGMEHWLPLFEERLVPLTDHLSGDSTVIILDHGVAGAAEARFEAIRDYHANRIAAKSSDPGAYRPLEPKALYLDAQEWEAVARDWPMHATTPFHEPESAAVIDFNVDGPRDFAPERAQNANIYEAVGKHIAALQRDRKRVIIASYSPGARERLSGLLADHGVKRLAAADDWQEALGLAATGATTLSVLHLDHGFTTPDVAVLTEQDMLGDRLVRRARRKKSADAFLQELATLSPGDLVVHRDHGIGRYEGLTQIPVAKAAHDCVALEYAGGDKLYVPVENLEVLSRYGSESDGVTLDRLGGEAWQRRKARMKERIREIAGELLKTAAERALRPAIVAEPDAAGYPAFVDRFPYQETDDQDRAISDVVEDLGAGKPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVVLICPTTLLARQHHMNFVERFRGFPVNIGRLSRLVPDKEAKAVKAGLADGTVDIVVGTHALLAKGLEFKRLGLVIVDEEQRFGVTHKERLKNLKTDVHVLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVRTYIMPWDAVVIREALLREHYRGGQSFFVVPRISDLADIEEYLRTEVPEVRPVVAHGQMAASEVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIHRADRFGLAQLYQLRGRVGRAKTRAYAYFTTPANRVITETAEKRLKVLSDLDTLGAGFQLASHDLDIRGAGNLVGDEQSGHIREVGFELYQSMLEDAIMEAKAGGVGLERPRDSYSPQISVDAPIMIPDDYVPDLDLRMGLYRRINEMEDRQGLESFAAELIDRFGKLPAPTQNLLKIIEIKQNCLKANIAKIDVGPKGALVSFHEDRFPNPAGLVSYIQRLDGVARLRPDSKVVVNRLWADPGARLNGALQLSKGLAKAAG
>NZ_CP013264.1|WP_062066531.1|3382059_3382323_+|succinate-dehydrogenase-assembly-factor-2
MNDNPQMRRIQFRAWHRGTREADYTVGGFFDRYHATWNEEETAWFERLMEEQDADIMGWAMGTIPVPDEWQGPMMDRFLKLDFVKVV
>NZ_CP013264.1|WP_062066528.1|3379851_3381915_-|ATP-dependent-DNA-helicase-RecG
MRPDILNPLFAEISALKGVGPSLAKPLERLALARAVDVAFHLPVSFIDRRLTDELSMADAGRVIGIELTPVDYRASGSARAPFRVQAVDGHGNAVALVYFGRNSAWPRKLLPLNEPRFVSGKLESYGDNLQIVHPDYVLPPEEAETVPAREAVYGLSEGLTNNRMRDLAGQALARAPELPEWIEPSLLARKGWPGWREALTRAHADPSDALARERLAYDEIFAGQLALMLVRQSSRKRRGVPIAGDGRLRAMLNLPFAPTGAQRRAFGEIEGDMAQGVPMLRLLQGDVGSGKTLVALMALLNAVEAGAQGALLAPTEILARQHYEGLRRMVAGLPVEIAILTGREKGKVREATLMGLADGSIDILVGTHAIFQEAVRYRNLALAVIDEQHRFGVAQRMMLAAKAERTPHLLVMTATPIPRTLTLTYYGEMDVSRLDEMPPGRQPIQTLVMSSQRIDEVVEALARHVEGGGQAYWVCPLVEESETSDQAAAEARAEALKMRFGERVGLVHGRMKGTDKDAAMDAFAANRTQILVATTVIEVGVDVPNASLIIIEGADRFGLAQLHQLRGRVGRGDKASVCLLLRGGALSETARARLALMRETNDGFRIAEEDLRLRGAGEILGTRQSGEAQLKLATPEHLSALIDAARDDAHLLMERDGGLAQERGQAARTCLYLFERDAAVGLLRSG
>NZ_CP013264.1|WP_062066525.1|3378881_3379628_-|hypothetical-protein
MAFSRSYCAAAMLMTLPLVACGKDDKNANLAALDAQLTNNMVDPALKSALADQIVVDPKLTGQSNRNAVRPADKPANAALPVLTGDAAKALAQAVQRAGGKLLAAPAPAQGGQMESTVTLGALAREQAQRTGGKNCSKQLVYGMQWSQRLPEPFTLYPGAQLLEAAGAEKDGCTLRAASFTTPVPKKSVIDYYFTQARRAGFDAEHRIIDGDNVLGGTRKDDGAAYFLLFTDAPGGRTNVDIIADNGK
>NZ_CP013264.1|WP_082635232.1|3395991_3397002_-|polysaccharide-deacetylase-family-protein
MDVKHGSDEHPPAAARHRYLSNRITKIFAVGGTAMVGTIAAILMAAPSPPVGDDRHFFIAITVDDLTGNAQLPPGMSRLEIADQYIRALRAHRVPDVYGFVNASKLQRDRDGGQVLASWRRASYLLGNHSYTHLNLNKAPSLEAWKADVLKDEQKIAQQMEGADWRYFRFPFLSAGKDKPQHDAAASFLKQQGYKIAEVSVSFNDWAYGNAYARCLAKGDEAAIDAMKRQYFRGVDDGIARMKELSLKTYGRMIPQVLLTHLSAWSAMTLPEVLTRLDAAGAQYVGLPQAQDDPAYVDGPWAGNQQVMERAARQARIDIDAIPRLQPIDNLKMLCR
>NZ_CP013264.1|WP_062066553.1|3397358_3399257_+|acyltransferase
MMRQYRADIDGLRTIAVVPVVIFHLGTSLFPGGFVGVDVFFVISGFLITQTLLGEQGTWRDALFDFYKRRIKRIFPALFALYICVMAVAGWLLMSDQAAEIGKSTIASIFFVSNILFYSQSGYFDGELNNNPLLHTWSLSVEEQFYIFFPLLIFFTRSWADRYRRQLVWALTITSLAASQWMVTRDTSAAFYLIPFRTWELAIGSLLAMRAVPEPRSAWQAEIGVALGLAMIGYSVLFYNKVTPFPGISALIPCVGTALVLLCGERSAFMAGRLLSLPPMRFIGLISYSLYLWHWPIMVFYRQIESRPDNMDRLMILAASFIAATLSWAFVEKPFRRSSPLGSRTVVARGAMAMAMCGAAVISLAALSNFFHPISAQAKEVLVYGEKTGRAEMMRTGVCFLTSQSRLEDFDFKRCMVAPHDKPRILIVGDSHAAHLYYGLNRAMPDVHILQATATGCRPLLNNRGDPRCLALMDKVFGDYLETTRPDMVILSARWLDKDVPELTGIVQRIRRTTPHLIVSGPIVEYDQPLPRLLARHIDQQEPIDPHRIVQVYDLDQRIGAVMRKANIPYFSPYRSLCAPQCRLWVTPGVPVQFDYGHLTQQGSIMLGRIMARDIRPQLATRSDVSTVAALQ
>NZ_CP013264.1|WP_062066556.1|3399316_3400093_-|SDR-family-oxidoreductase
MNDRFKDQVALVTAGAAGIGAATAEMFARQGARVMLSDINRPAGEAMAEKLRSEGYEAQFLHADATVEEEVEALVRKTVETYGGLHLAANVVGDAHPRASGAEFHTQSLESWEHTMAVTLRSVFLSMKYEIAHMIDNGGGAIANVTSLAALLYVGVSGAAYAASKAGVVRLTKFAAVTYADRGVRVNCIAPGVTPTAAYNKAGEDIGRMVIDDLLQNQPIRRTINPSEQAEAIGWLCSTEASMVTGHVLPVDGGWTAR
>NZ_CP013264.1|WP_062066559.1|3400133_3401408_-|cytochrome-P450
MTTGHIDAATLDEDFAAVSEMFGTDIRDPHSLYREYRQAQPVMEGDILARFNVPSQADYSNLGRQVFTLFKYQDVLAVLRDSKTFTSTLLNEGLGQFLGGFLLTGMEDGRHKEIRSLLAPAFSPRAIQEWKLMLGPVAQEAVTALRPVGRAELVADLLLPLPVRMIYEIMGFPRDTEQMQAFAARAMKILVGPQRDPEKMRLSMEVAFQAARELYDETLDIVRARRAAGSEGSDLIGYLLRANDKGRTLDDGEITELIRQFLPAAAETTTRSFGSMLVALLERPALLQRVRDDRNLVPKVVSEGMRWETASQFLARQAAVDVEIRGVKIPAGAALSLASGSANRDEEIFENPDEFDIDRPQRVNIGFGAGAHLCLGMQIARTEMEAMLNALLDLPDLRLDPDAPPPAIVGAQLRGPRAIHVVWN
>NZ_CP013264.1|WP_062066562.1|3401404_3403558_-|molybdopterin-dependent-oxidoreductase
MREERTFCRICTGHCGLLLAIDEDGAPVSVRGDREDPRSLGYICSKGVTSVQAHTDGSRLLHPLKRQPDGSFVQIDLDQALDEISARMEAIARKNGPDAIAGYRGTGGFFTTSGLGMLPALLDAFGSHKLYTTLTIDQSAKVVTAYRLGIWPPGKQSFQSADVAMMIGGNPMVSMAQLDTRNPVKRMAEAKARGLKLIVIDPRQTETAALADLFLQPLPGHDAAIVAALIHIVLEEGWHDAAFCADHVGDLDELQAAVASFAPDQVARAAQIVEADLRAAARMFARTGTRGIAVTGTGVDMGPHSNLAEHLVESLNVICGRFVREGELVENPGLVLNAGPKPAQVVNLPRPWESGPQSRIGDYGLVGGEMVTAMLADDILRPGPGRVRALINHGGNPALAVPDQRKMVEALRDLDLLISIEPVLSATARLSHYILPPKLQFERPDLPIYLFEPNIFPTPYTRYTPALVDPPAGSGVCDEWKVFWEIARRTGRSMAYMGTALAMDGSPEEDHLIALTLANAPVSLDEVKRHPLGYYHPNLQYALPPDPATAGRFATMPRDVAAEMKALVRDWQTPTGEDFPFHFINRRARHRMNSMGATLPDLIKAMPHNPVHMCPEDMARLEIISGDRVEIASAHGAVTGQAQADGTLRPSVVSMSHGFGGLPDEDMDDAGSPNLLISTDSDLQTINAMPRMTAIPVRVRRLDRLSTPIGKSEDQAA
>NZ_CP013264.1|WP_062066565.1|3403561_3405232_-|FAD-dependent-oxidoreductase
MQWDEDFDVVCVGSGLGGMSAALTAAERGSRAIVLEKFELLGGVSALSSGQLWLGNHHLQDADGIEDNDADVERHLSHLGQGFATADRRKVFVTRAREALRYFTDVIGIEMMVVRGLPDYYHPAVPGSRAEGRYVEVKPFKDERLGDLASLVLTSPYGDGYSYTTANEWVGMQTGGEPVGACLQRHLEVGERCAGAGLAAAQVAAARDRGVEMRVSNAVTELVIDEGEIVGVVVQGPSGTTRIRARLGVVLATGGYDWKPDFVRAFDALPEAGTMAPPTVSGDHIVMASKAGAIAIPARAPSQSPIFIGYKVPAETIYGKPSSRMWLPGTPHCIAVNRYGRRFANDGFYPDVATKVARFDGQEQGQPNWPAWIIFDQDMVDKYGMMPSWPGQPLSEGMATSADSLEALAQAVGIDVDGLQDTVARFNGFCETGVDEDFARGSVPWGRIMTGDPRRSNPNLGPIGRAPFYAVKLERVNMGVPTAGLAIDIDGRVLDAHDRPITGLYAAGNSASWLDIGGGYNSGIANTRGMLYGYLAALHMTGQQAAPASAPPMVSA
>NZ_CP013264.1|WP_062066568.1|3405266_3406544_-|cytochrome-P450
MSLPETAPPPPRDVSVATLDELEPGNYFPLSLGSETLRQNALDGLVASWSMRRPFYIRQNGILSVMCGRARDVREVWLDSARFTVEVPRREGYEILDMFGGLESVLQMDGARHNRIRKLMNPSFTRAGMEALKADADRIIAEKLDRIARIGPAFDAMKDFAEDLVTRVMLEASFKLTPDHCAIFVTMQQEMNKLPSYVAGEPLPQSFIDAGLAVREAVDDIVRRRRADPGIDLISSLITAQEDGQSLTDAELFGQINSIATAGIGTTANTLAGGIMMLCRNRNQLELLRQEPQLIDGAVGECLRFHGPGITSFVRFATEDTEVGGTRIPRHMPVYVSAQAAGFDPTEHEDPFRFDIRRNNRSMLTFGTGIHHCIGQRLATYILRTALSGLIRRFPDMRLADSAFRPAYSGLTGELAPLMVPMLTH
>NZ_CP013264.1|WP_062066571.1|3406553_3407348_-|SDR-family-oxidoreductase
MGSLDGRVAIVTGAGEGIGKGIARRFAREGAKVVIAEINSGLGQSAVKEIAAETNGELLFVPTDVRRKDDVAGMIDAAVQCFGGADILVNNAWGGGVFKRAEHKNDADLEYGLSMNIWAAFWAAKAALPHMRSKGWGRIISICSLNGVNAHTGTLEYNVGKEGLRALTRSIAREWAPYQICANIICPAAITTAFRTFAESSPELAAKLPTPPMGRLGDPDDDIAGVALFLASDDARYVTGNTLFADGGSHINGASWSLDLPDEE
>NZ_CP013264.1|WP_062066573.1|3407561_3409919_+|TonB-dependent-receptor
MEDAMKSGKFRAIFCSTLGMMLVPMTTFAQDALPQGDANQSTGLADIVVTARRSTENAQSVPVTITALDAQGLRDAQIRTPQDLQASVPGVFLSGSSSRASPMYAIRGQSRPLSGNGAPAVVTYFSDVPLPTYVSAVPQFDLQSIQVLKGPQGTLFGRNTSAGAVLLYPQAPTYNLEGYVEGTIGNYDLRTLEGVVNVPILEGKVALRLGGLMERRDGNIKNIDTRFRDLQNLHSNHLRASLLLEPTDWLKNTTIFDYNRQPYSKVSATGTVLVWADPNDPYLSAQYEAQRKRGFFTSGSNFTTSEGYTTYGLSNKTEISIGNITLTNIFGLRQVKFATDNSGDAVPLKYVDSLQVIGSRQYSNEVQLAGDGLGGRLKWLVGGFFLDAKPRGPNTLDTDIFRDVFAPGLLPNTPSSYAFNREKSKALFANLSYRLDALLDGLTVNAGARYTWDKFYLCSGTGEYDPPYSYTPDDCPGVIPEGSAIAGKSSKPTWTIGLDYQANEDLFFFITSRRGYKAAGLNGPSFGTGLKPLQGFRPEITTDVELGVKSTIRAGGAQIRLNGSVFRSYVRDLQQTVSGVSTGNFAGIGLACTAPDFEPFLDGDCDPSNDPQGTVLTINAGKLRTTGVELESVIAPTRNLTLTMGATFIDAKVTSFSVPAILAAVAPPNLGTLYTPKRTFSGDVRYVLPLDERIGEVALNATYYTSSKFDMVGYTANGYQLVNARLDWNNIAGSQVSAGIFARNLFNAKYVSGPAITAVGLPLTSVIVGDPRAYGLVLRVGFGPR
>NZ_CP013264.1|WP_062066585.1|3409944_3410877_-|helix-turn-helix-transcriptional-regulator
MEEVDPLTSFRSESEPLVDGRLVSDPMADLLENIRLNHSSYDVVQLDDGEELTCAANPDFTGLFVIEGDIELRSGNGEVEMLRQADFVLVTPRQLMHVTAIGGGCLLGRVHYGMDMDRASLLLKMLPPHLTVRRGQAQDDEWEWQLRLSRLIVDRRHCYRASNAAIDRRLVEVVLIGVIQQYLTSMKTTPALTDPELVRIGPSLHAIHQFPAKAWTVTSLARVAGMSRTLFAVRFAEYTGQTPARYLLERRMELARDLLARSPLALAAVAHRCGYSTDVAFARAFRRRNGVSPGRYRTETRMKGDARGTA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_LR134463	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 21, complete sequence	93690-93718	4	0.862
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	103822-103850	4	0.862
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	943401-943429	4	0.862
NZ_CP013264_1	1.18\|3395634\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395634-3395663	30	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	721951-721980	4	0.867
NZ_CP013264_1	1.18\|3395634\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395634-3395663	30	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	186038-186067	5	0.833
NZ_CP013264_1	1.3\|3394645\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394645-3394674	30	NZ_CP040096	Pantoea sp. SO10 plasmid unnamed1, complete sequence	424912-424941	6	0.8
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	992009-992037	6	0.793
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	991108-991136	6	0.793
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	888443-888471	6	0.793
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	960696-960724	6	0.793
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	887540-887568	6	0.793
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	893181-893209	6	0.793
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	893171-893199	6	0.793
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	888435-888463	6	0.793
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	888453-888481	6	0.793
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	888426-888454	6	0.793
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	992095-992123	6	0.793
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	992092-992120	6	0.793
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	992076-992104	6	0.793
NZ_CP013264_1	1.9\|3395040\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395040-3395069	30	NZ_CP009439	Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence	16202-16231	6	0.8
NZ_CP013264_1	1.10\|3395106\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395106-3395135	30	NZ_CP025811	Sulfitobacter sp. SK025 plasmid unnamed3, complete sequence	89605-89634	6	0.8
NZ_CP013264_1	1.10\|3395106\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395106-3395135	30	NZ_CP013855	Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence	79876-79905	6	0.8
NZ_CP013264_1	1.16\|3395502\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395502-3395531	30	NZ_CP010857	Marinovum algicola DG 898 plasmid pMaD2, complete sequence	118794-118823	6	0.8
NZ_CP013264_1	1.16\|3395502\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395502-3395531	30	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	8159-8188	6	0.8
NZ_CP013264_1	1.17\|3395568\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395568-3395597	30	MG592519	Vibrio phage 1.150.O._10N.222.46.A6, partial genome	34702-34731	6	0.8
NZ_CP013264_1	1.17\|3395568\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395568-3395597	30	MG592409	Vibrio phage 1.025.O._10N.222.46.B6, partial genome	34760-34789	6	0.8
NZ_CP013264_1	1.17\|3395568\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395568-3395597	30	MG592668	Vibrio phage 2.130.O._10N.222.46.C2, partial genome	34840-34869	6	0.8
NZ_CP013264_1	1.17\|3395568\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395568-3395597	30	MG592521	Vibrio phage 1.152.O._10N.222.46.E1, partial genome	34837-34866	6	0.8
NZ_CP013264_1	1.17\|3395568\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395568-3395597	30	NC_049431	Vibrio phage 1.097.O._10N.286.49.B3, partial genome	42233-42262	6	0.8
NZ_CP013264_1	1.17\|3395568\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395568-3395597	30	MG592410	Vibrio phage 1.026.O._10N.222.49.C7, partial genome	34839-34868	6	0.8
NZ_CP013264_1	1.18\|3395634\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395634-3395663	30	NZ_CP040763	Paracoccus sp. 2251 plasmid unnamed4, complete sequence	229444-229473	6	0.8
NZ_CP013264_1	1.1\|3394513\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394513-3394542	30	NZ_LR723679	Arsenite-oxidising bacterium NT-25 plasmid 3	121643-121672	7	0.767
NZ_CP013264_1	1.1\|3394513\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394513-3394542	30	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	1125301-1125330	7	0.767
NZ_CP013264_1	1.4\|3394711\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394711-3394740	30	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	589693-589722	7	0.767
NZ_CP013264_1	1.4\|3394711\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394711-3394740	30	NZ_CP021373	Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence	86717-86746	7	0.767
NZ_CP013264_1	1.4\|3394711\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394711-3394740	30	NC_019789	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence	194583-194612	7	0.767
NZ_CP013264_1	1.4\|3394711\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394711-3394740	30	NC_019790	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE02, complete sequence	66040-66069	7	0.767
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	215108-215136	7	0.759
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	22254-22282	7	0.759
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	22259-22287	7	0.759
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	22264-22292	7	0.759
NZ_CP013264_1	1.5\|3394777\|29\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394777-3394805	29	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	22263-22291	7	0.759
NZ_CP013264_1	1.6\|3394842\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394842-3394871	30	MN694811	Marine virus AFVG_250M587, complete genome	107-136	7	0.767
NZ_CP013264_1	1.6\|3394842\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394842-3394871	30	MN694811	Marine virus AFVG_250M587, complete genome	33861-33890	7	0.767
NZ_CP013264_1	1.7\|3394908\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394908-3394937	30	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	2536285-2536314	7	0.767
NZ_CP013264_1	1.7\|3394908\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394908-3394937	30	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1170647-1170676	7	0.767
NZ_CP013264_1	1.7\|3394908\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394908-3394937	30	NZ_CP016078	Actinoalloteichus sp. GBA129-24 plasmid pGBA129-24a, complete sequence	35439-35468	7	0.767
NZ_CP013264_1	1.9\|3395040\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395040-3395069	30	NZ_CP024423	Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence	142327-142356	7	0.767
NZ_CP013264_1	1.9\|3395040\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395040-3395069	30	NZ_CP049142	Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence	24679-24708	7	0.767
NZ_CP013264_1	1.9\|3395040\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395040-3395069	30	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1066924-1066953	7	0.767
NZ_CP013264_1	1.9\|3395040\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395040-3395069	30	NC_022235	Sphingomonas sp. ERG5 plasmid pCADAB1, complete sequence	31808-31837	7	0.767
NZ_CP013264_1	1.16\|3395502\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395502-3395531	30	NZ_CP016593	Ketogulonicigenium vulgare strain SKV plasmid pKvSKV1, complete sequence	175005-175034	7	0.767
NZ_CP013264_1	1.16\|3395502\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395502-3395531	30	NC_017386	Ketogulonicigenium vulgare WSH-001 plasmid 1, complete sequence	110205-110234	7	0.767
NZ_CP013264_1	1.16\|3395502\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395502-3395531	30	NC_014621	Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence	76907-76936	7	0.767
NZ_CP013264_1	1.16\|3395502\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395502-3395531	30	NZ_CP012909	Ketogulonicigenium vulgare strain Hbe602 plasmid 1, complete sequence	175013-175042	7	0.767
NZ_CP013264_1	1.18\|3395634\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395634-3395663	30	NZ_CP022542	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-2, complete sequence	66543-66572	7	0.767
NZ_CP013264_1	1.18\|3395634\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395634-3395663	30	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	58781-58810	7	0.767
NZ_CP013264_1	1.18\|3395634\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395634-3395663	30	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	106634-106663	7	0.767
NZ_CP013264_1	1.7\|3394908\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394908-3394937	30	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	1150208-1150237	8	0.733
NZ_CP013264_1	1.9\|3395040\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395040-3395069	30	NC_007410	Trichormus variabilis ATCC 29413 plasmid A, complete sequence	229469-229498	8	0.733
NZ_CP013264_1	1.9\|3395040\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395040-3395069	30	NZ_CP047243	Trichormus variabilis 0441 plasmid unnamed1, complete sequence	235194-235223	8	0.733
NZ_CP013264_1	1.10\|3395106\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395106-3395135	30	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	270325-270354	8	0.733
NZ_CP013264_1	1.18\|3395634\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395634-3395663	30	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	815735-815764	8	0.733
NZ_CP013264_1	1.7\|3394908\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394908-3394937	30	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	1235556-1235585	9	0.7
NZ_CP013264_1	1.4\|3394711\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394711-3394740	30	MK416013	Klebsiella phage ST16-OXA48phi5.1, complete genome	6356-6385	10	0.667
NZ_CP013264_1	1.4\|3394711\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394711-3394740	30	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	113-142	10	0.667
NZ_CP013264_1	1.4\|3394711\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3394711-3394740	30	MK448234	Klebsiella phage ST11-VIM1phi8.2, complete genome	48103-48132	10	0.667
NZ_CP013264_1	1.18\|3395634\|30\|NZ_CP013264\|PILER-CR,CRISPRCasFinder,CRT	3395634-3395663	30	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	127774-127803	10	0.667

1. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134463 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 21, complete sequence) position: , mismatch: 4, identity: 0.862

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
gcgcttcccccagttcacgggcgcgctca	Protospacer
******** ********** *******

2. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.862

gcgcttccgccagttcacgcgcgcgctgc-	CRISPR spacer
gcgcttgcgccagttcacacgcgc-ccgca	Protospacer
****** ***********.***** *.**

3. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 4, identity: 0.862

gcgcttccgccagttcacgcgcgcgctgc-	CRISPR spacer
gcgcttgcgccagttcacacgcgc-ccgca	Protospacer
****** ***********.***** *.**

4. spacer 1.18|3395634|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.867

-cggatcgctgcggcatgtcgggcaagcgca	CRISPR spacer
acgga-cgcggcggcatgacgggcaagcgcg	Protospacer
 **** *** ******** ***********.

5. spacer 1.18|3395634|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 5, identity: 0.833

cggatc-gctgcggcatgtcgggcaagcgca	CRISPR spacer
-ggaccggctgcggcatggcgggcaagggcg	Protospacer
 ***.* *********** ******** **.

6. spacer 1.3|3394645|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040096 (Pantoea sp. SO10 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

tgctatgctgcggcactgatttcatcggac	CRISPR spacer
tggagtgctgcggcgctgatttcatcgtcc	Protospacer
**  .*********.************  *

7. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
cgtcctccgccagttcacgcgcgagcttc	Protospacer
   *.****************** *** *

8. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
cgtcctccgccagttcacgcgcgagcttc	Protospacer
   *.****************** *** *

9. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
cgtcctccgccagttcacgcgcgagcttc	Protospacer
   *.****************** *** *

10. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
cgtcctccgccagttcacgcgcgagcttc	Protospacer
   *.****************** *** *

11. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
cgtcctccgccagttcacgcgcgagcttc	Protospacer
   *.****************** *** *

12. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
cgtcctccgccagttcacgcgcgagcttc	Protospacer
   *.****************** *** *

13. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
cgtcctccgccagttcacgcgcgagcttc	Protospacer
   *.****************** *** *

14. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
cgtcctccgccagttcacgcgcgagcttc	Protospacer
   *.****************** *** *

15. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
cgtcctccgccagttcacgcgcgagcttc	Protospacer
   *.****************** *** *

16. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
cgtcctccgccagttcacgcgcgagcttc	Protospacer
   *.****************** *** *

17. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
cgtcctccgccagttcacgcgcgagcttc	Protospacer
   *.****************** *** *

18. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
cgtcctccgccagttcacgcgcgagcttc	Protospacer
   *.****************** *** *

19. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
cgtcctccgccagttcacgcgcgagcttc	Protospacer
   *.****************** *** *

20. spacer 1.9|3395040|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009439 (Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence) position: , mismatch: 6, identity: 0.8

gagatgacctgcttccggctgatggcagcg	CRISPR spacer
ctgatgacctgctcccggctgatgacgccg	Protospacer
  ***********.**********.*. **

21. spacer 1.10|3395106|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025811 (Sulfitobacter sp. SK025 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

cgaagcggtgggcgaccccggcacaggcaa	CRISPR spacer
caagtcggtgggcgaccccgtcacaggcgg	Protospacer
*.*. *************** *******..

22. spacer 1.10|3395106|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 6, identity: 0.8

cgaagcggtgggcgaccccggcacaggcaa	CRISPR spacer
ggtagccgtgggcgaccccggcaccgccga	Protospacer
 * *** ***************** * *.*

23. spacer 1.16|3395502|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010857 (Marinovum algicola DG 898 plasmid pMaD2, complete sequence) position: , mismatch: 6, identity: 0.8

ctgcgctggcagggatgcgcgggtgtggat	CRISPR spacer
cagcactggcagggttgcgcgggtgtcctt	Protospacer
* **.********* ***********   *

24. spacer 1.16|3395502|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.8

ctgcgctggcagggatgcgcgggtgtggat	CRISPR spacer
cagcgcaggcagggaggcgcgggtgcgaac	Protospacer
* **** ******** *********.*.*.

25. spacer 1.17|3395568|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to MG592519 (Vibrio phage 1.150.O._10N.222.46.A6, partial genome) position: , mismatch: 6, identity: 0.8

acgacgaagaactgagggacgatctgacga	CRISPR spacer
atgacgaagaactgagggaggatctggtat	Protospacer
*.***************** ******...

26. spacer 1.17|3395568|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to MG592409 (Vibrio phage 1.025.O._10N.222.46.B6, partial genome) position: , mismatch: 6, identity: 0.8

acgacgaagaactgagggacgatctgacga	CRISPR spacer
atgacgaagaactgagggaggatctggtat	Protospacer
*.***************** ******...

27. spacer 1.17|3395568|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to MG592668 (Vibrio phage 2.130.O._10N.222.46.C2, partial genome) position: , mismatch: 6, identity: 0.8

acgacgaagaactgagggacgatctgacga	CRISPR spacer
atgacgaagaactgagggaggatctggtat	Protospacer
*.***************** ******...

28. spacer 1.17|3395568|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to MG592521 (Vibrio phage 1.152.O._10N.222.46.E1, partial genome) position: , mismatch: 6, identity: 0.8

acgacgaagaactgagggacgatctgacga	CRISPR spacer
atgacgaagaactgagggaggatctggtat	Protospacer
*.***************** ******...

29. spacer 1.17|3395568|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NC_049431 (Vibrio phage 1.097.O._10N.286.49.B3, partial genome) position: , mismatch: 6, identity: 0.8

acgacgaagaactgagggacgatctgacga	CRISPR spacer
atgacgaagaactgagggaggatctggtat	Protospacer
*.***************** ******...

30. spacer 1.17|3395568|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to MG592410 (Vibrio phage 1.026.O._10N.222.49.C7, partial genome) position: , mismatch: 6, identity: 0.8

acgacgaagaactgagggacgatctgacga	CRISPR spacer
atgacgaagaactgagggaggatctggtat	Protospacer
*.***************** ******...

31. spacer 1.18|3395634|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040763 (Paracoccus sp. 2251 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

cggatc-gctgcggcatgtcgggcaagcgca	CRISPR spacer
-gaaccggctgcggcatgtcgggaaagggcg	Protospacer
 *.*.* **************** *** **.

32. spacer 1.1|3394513|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR723679 (Arsenite-oxidising bacterium NT-25 plasmid 3) position: , mismatch: 7, identity: 0.767

tcgcgcgtgcggcatcccctccatgtcgcc	CRISPR spacer
cggtcctttcggcatcccctccatgttgcc	Protospacer
. *. * * *****************.***

33. spacer 1.1|3394513|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 7, identity: 0.767

tcgcgcgtgcggcatcccctccatgtcgcc	CRISPR spacer
ctgcctttgcggcatccgctccatatcgcc	Protospacer
..** . ********** ******.*****

34. spacer 1.4|3394711|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 7, identity: 0.767

ccatcagaatagcgtctttcagcagcgcgg	CRISPR spacer
ctatcagaagagcgtctttccgcagcagtt	Protospacer
*.******* ********** *****.

35. spacer 1.4|3394711|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021373 (Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence) position: , mismatch: 7, identity: 0.767

ccatcagaatagcgtctttcagcagcgcgg	CRISPR spacer
gcatgagaatagcgtctttcatcagatcca	Protospacer
 *** **************** ***  * .

36. spacer 1.4|3394711|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NC_019789 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence) position: , mismatch: 7, identity: 0.767

ccatcagaatagcgtctttcagcagcgcgg	CRISPR spacer
gtacctgaacagcgtctttcagcagctcgc	Protospacer
 .*.* ***.**************** **

37. spacer 1.4|3394711|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NC_019790 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE02, complete sequence) position: , mismatch: 7, identity: 0.767

ccatcagaatagcgtctttcagcagcgcgg	CRISPR spacer
gtacctgaacagcgtctttcagcagctcgc	Protospacer
 .*.* ***.**************** **

38. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
actgaaccgccagttcacgcacacgctgc	Protospacer
.*    **************.*.******

39. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
actgaaccgccagttcacgcacacgctgc	Protospacer
.*    **************.*.******

40. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
actgaaccgccagttcacgcacacgctgc	Protospacer
.*    **************.*.******

41. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
actgaaccgccagttcacgcacacgctgc	Protospacer
.*    **************.*.******

42. spacer 1.5|3394777|29|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcttccgccagttcacgcgcgcgctgc	CRISPR spacer
actgaaccgccagttcacgcacacgctgc	Protospacer
.*    **************.*.******

43. spacer 1.6|3394842|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to MN694811 (Marine virus AFVG_250M587, complete genome) position: , mismatch: 7, identity: 0.767

gcttgggcgtcaacctccacctcttaccga	CRISPR spacer
tcttgcgagtcaacctccacctcttgctcc	Protospacer
 **** * *****************.*.

44. spacer 1.6|3394842|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to MN694811 (Marine virus AFVG_250M587, complete genome) position: , mismatch: 7, identity: 0.767

gcttgggcgtcaacctccacctcttaccga	CRISPR spacer
tcttgcgagtcaacctccacctcttgctcc	Protospacer
 **** * *****************.*.

45. spacer 1.7|3394908|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 7, identity: 0.767

ccatctggtgctgtcgagcgtggcagtcgt-	CRISPR spacer
cgggctggtgctgtcgaccgtggca-tggca	Protospacer
* . ************* ******* * *.

46. spacer 1.7|3394908|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.767

ccatctggtgctgtcgagcgtggcagtcgt-	CRISPR spacer
cgggctggtgctgtcgaccgtggca-tggca	Protospacer
* . ************* ******* * *.

47. spacer 1.7|3394908|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016078 (Actinoalloteichus sp. GBA129-24 plasmid pGBA129-24a, complete sequence) position: , mismatch: 7, identity: 0.767

ccatctggtgctgtcgagcgtggcagtcgt	CRISPR spacer
gccgctggtgctgtcgcgcgtggcatcggt	Protospacer
 *  ************ ******** . **

48. spacer 1.9|3395040|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 7, identity: 0.767

gagatgacctgcttccggctgatggcagcg	CRISPR spacer
acgatgacctgcatcgggctgatggcctgg	Protospacer
. ********** ** **********   *

49. spacer 1.9|3395040|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049142 (Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence) position: , mismatch: 7, identity: 0.767

gagatgacctgcttccggctgatggcagcg	CRISPR spacer
cagatgaccggcttccggctgaaggtaaat	Protospacer
 ******** ************ **.*.

50. spacer 1.9|3395040|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 7, identity: 0.767

gagatgacctgcttccggctgatggcagcg	CRISPR spacer
ccgccgccctgcttccggccgatggcggcg	Protospacer
  * .* ************.******.***

51. spacer 1.9|3395040|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NC_022235 (Sphingomonas sp. ERG5 plasmid pCADAB1, complete sequence) position: , mismatch: 7, identity: 0.767

gagatgacctgcttccggctgatggcagcg	CRISPR spacer
ccgcagccctgcttccggccgatggcggcg	Protospacer
  *  * ************.******.***

52. spacer 1.16|3395502|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016593 (Ketogulonicigenium vulgare strain SKV plasmid pKvSKV1, complete sequence) position: , mismatch: 7, identity: 0.767

ctgcgctggcagggatgcgcgggtgtggat-	CRISPR spacer
atgcgctggcagggctgcgc-ggtgttccca	Protospacer
 ************* ***** *****   .

53. spacer 1.16|3395502|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NC_017386 (Ketogulonicigenium vulgare WSH-001 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.767

ctgcgctggcagggatgcgcgggtgtggat-	CRISPR spacer
atgcgctggcagggctgcgc-ggtgttccca	Protospacer
 ************* ***** *****   .

54. spacer 1.16|3395502|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NC_014621 (Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence) position: , mismatch: 7, identity: 0.767

ctgcgctggcagggatgcgcgggtgtggat-	CRISPR spacer
atgcgctggcagggctgcgc-ggtgttccca	Protospacer
 ************* ***** *****   .

55. spacer 1.16|3395502|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012909 (Ketogulonicigenium vulgare strain Hbe602 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.767

ctgcgctggcagggatgcgcgggtgtggat-	CRISPR spacer
atgcgctggcagggctgcgc-ggtgttccca	Protospacer
 ************* ***** *****   .

56. spacer 1.18|3395634|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022542 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-2, complete sequence) position: , mismatch: 7, identity: 0.767

cggatcgctgcggcatgtcgggcaagcgca	CRISPR spacer
atgtcggcggcggcatgtcggccaagcgca	Protospacer
  * . ** ************ ********

57. spacer 1.18|3395634|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 7, identity: 0.767

cggatcgctgcggcatgtcgggcaagcgca-	CRISPR spacer
gcttgcgcggcggcatgtcgggcaag-gcac	Protospacer
     *** ***************** ***

58. spacer 1.18|3395634|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 7, identity: 0.767

cggatcgctgcggcatgtcgggcaagcgca-	CRISPR spacer
gcttgcgcggcggcatgtcgggcaag-gcac	Protospacer
     *** ***************** ***

59. spacer 1.7|3394908|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.733

ccatctggtgctgtcgagcgtggcagtcgt	CRISPR spacer
gttgatggtgctgtcgagcgtggcaggctc	Protospacer
 .   ********************* * .

60. spacer 1.9|3395040|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NC_007410 (Trichormus variabilis ATCC 29413 plasmid A, complete sequence) position: , mismatch: 8, identity: 0.733

gagatgacctgcttccggctgatggcagcg	CRISPR spacer
ccaatgacatgattccggctgatggcgaag	Protospacer
  .***** ** **************.. *

61. spacer 1.9|3395040|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047243 (Trichormus variabilis 0441 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gagatgacctgcttccggctgatggcagcg	CRISPR spacer
ccaatgacatgattccggctgatggcgaag	Protospacer
  .***** ** **************.. *

62. spacer 1.10|3395106|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.733

cgaagcggtgggcgaccccggcacaggcaa	CRISPR spacer
gctgacggtgagcgacaccggcacaggcat	Protospacer
   ..*****.***** ************

63. spacer 1.18|3395634|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 8, identity: 0.733

cggatcgctgcggcatgtcgggcaagcgca	CRISPR spacer
gcgctcgcggcggcatgccgggcaagcagc	Protospacer
  * **** ********.*********.

64. spacer 1.7|3394908|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 9, identity: 0.7

ccatctggtgctgtcgagcgtggcagtcgt	CRISPR spacer
gttgatggtgctgtcgagcgtggaaggctc	Protospacer
 .   ****************** ** * .

65. spacer 1.4|3394711|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to MK416013 (Klebsiella phage ST16-OXA48phi5.1, complete genome) position: , mismatch: 10, identity: 0.667

ccatcagaatagcgtctttcagcagcgcgg	CRISPR spacer
ggcagggaatggcgtctttcagcagcggat	Protospacer
     .****.**************** .

66. spacer 1.4|3394711|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 10, identity: 0.667

ccatcagaatagcgtctttcagcagcgcgg	CRISPR spacer
ggcagggaatggcgtctttcagcagcggat	Protospacer
     .****.**************** .

67. spacer 1.4|3394711|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to MK448234 (Klebsiella phage ST11-VIM1phi8.2, complete genome) position: , mismatch: 10, identity: 0.667

ccatcagaatagcgtctttcagcagcgcgg	CRISPR spacer
ggcagggaatggcgtctttcagcagcggat	Protospacer
     .****.**************** .

68. spacer 1.18|3395634|30|NZ_CP013264|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 10, identity: 0.667

cggatcgctgcggcatgtcgggcaagcgca	CRISPR spacer
gcagcggctgcggcatgtcgggcacgccgt	Protospacer
  ... ****************** **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3611 : 12353

Bacillus_virus(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062060606.1\|3611_4424_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	1.5e-25	30.5
WP_062060609.1\|4507_5239_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_062060612.1\|5245_6787_+	2-polyprenylphenol 6-hydroxylase	A0A2N9QVT9	Dishui_lake_phycodnavirus	5.0e-33	29.1
WP_062060615.1\|6783_8043_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	2.1e-37	33.5
WP_062060618.1\|8017_8482_+	dUTP diphosphatase	K4JSC8	Caulobacter_phage	1.1e-36	55.0
WP_062060621.1\|8478_9246_+	HesA/MoeB/ThiF family protein	A0A1V0SAV8	Catovirus	2.9e-05	28.1
WP_021244141.1\|9233_9599_+	peroxiredoxin	NA	NA	NA	NA
WP_082635039.1\|9691_11692_+\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	6.8e-107	37.5
WP_062060627.1\|11819_12353_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.7e-15	32.9

DBSCAN-SWA_2

73157 : 134704

Bacillus_phage(28.57%)

protease,head,portal,tRNA,tail,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062060794.1\|73157_74738_-\|tRNA	lysine--tRNA ligase	NA	NA	NA	NA
WP_062060798.1\|74865_75249_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_062060801.1\|75314_76349_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_062060805.1\|76419_79176_+	ATP-dependent DNA helicase	NA	NA	NA	NA
WP_062060808.1\|79172_79715_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_062060811.1\|79725_80247_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_062060814.1\|80255_80597_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_062060817.1\|80680_80977_-	integration host factor subunit alpha	A0A1P8CWT5	Bacillus_phage	2.8e-09	32.6
WP_062060821.1\|81093_82062_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_082635042.1\|82058_83114_-	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_031291030.1\|83146_83326_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_062060824.1\|83542_83974_+	GST-like protein	NA	NA	NA	NA
WP_062068219.1\|83970_84627_-	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	1.6e-17	28.4
WP_062060827.1\|84689_85124_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_062060830.1\|85240_85597_-	ArsC family reductase	NA	NA	NA	NA
WP_062060833.1\|85603_85984_-	RidA family protein	NA	NA	NA	NA
WP_062060836.1\|86121_86415_+	hypothetical protein	NA	NA	NA	NA
WP_062060839.1\|86421_87870_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_062060842.1\|87873_89406_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_062060844.1\|89402_90548_-	HlyD family secretion protein	NA	NA	NA	NA
WP_062060847.1\|90634_91585_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_062060854.1\|91871_93461_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_156415181.1\|93460_93775_-	hypothetical protein	NA	NA	NA	NA
WP_062060857.1\|94086_94722_+	aldehyde dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_062060860.1\|94718_95669_+	xanthine dehydrogenase family protein subunit M	NA	NA	NA	NA
WP_062060863.1\|95672_97871_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	A0A0P0I429	Acinetobacter_phage	1.5e-30	25.3
WP_062068222.1\|97954_98476_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_062060866.1\|98472_99171_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_062060869.1\|99654_100209_+	hypothetical protein	NA	NA	NA	NA
WP_062060873.1\|100198_101557_+	AAA family ATPase	A0A1B2LRQ1	Wolbachia_phage	3.3e-20	33.8
WP_156415182.1\|101553_101712_+	hypothetical protein	NA	NA	NA	NA
WP_082635044.1\|101704_102091_+	hypothetical protein	NA	NA	NA	NA
WP_062060876.1\|102090_103677_+\|terminase	terminase large subunit	B5WZR8	Pseudomonas_phage	3.8e-76	37.7
WP_156415183.1\|103957_104296_+	hypothetical protein	NA	NA	NA	NA
WP_156415184.1\|104408_105080_+	hypothetical protein	NA	NA	NA	NA
WP_062060885.1\|105231_106542_+\|capsid	phage major capsid protein	D6PFE3	uncultured_phage	1.5e-17	28.9
WP_062068224.1\|106562_107057_+\|head,protease	HK97 family phage prohead protease	A0A1B2APW1	Phage_Wrath	9.7e-23	45.8
WP_062060888.1\|107053_108244_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	3.5e-42	31.0
WP_062060891.1\|108240_108507_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_062060893.1\|108506_108752_+	hypothetical protein	NA	NA	NA	NA
WP_082635045.1\|108733_109813_+	hypothetical protein	A0A141GEZ3	Brucella_phage	1.2e-12	26.8
WP_062068226.1\|110005_111772_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.1e-55	32.5
WP_062060899.1\|111935_114026_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA
WP_062060903.1\|114025_118219_+	DUF490 domain-containing protein	NA	NA	NA	NA
WP_062060906.1\|118364_120152_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	7.5e-57	32.6
WP_062068228.1\|120190_120520_-	pilus assembly protein PilZ	NA	NA	NA	NA
WP_062060909.1\|120706_121129_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_062060912.1\|121150_121639_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_062060915.1\|121752_122511_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_062060919.1\|122585_123239_-	energy transducer TonB	NA	NA	NA	NA
WP_156415322.1\|123629_124388_+	hypothetical protein	NA	NA	NA	NA
WP_062060922.1\|124468_125773_+	homoserine dehydrogenase	NA	NA	NA	NA
WP_062068232.1\|126117_127101_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_062060925.1\|127243_127621_-	MerC domain-containing protein	NA	NA	NA	NA
WP_062060928.1\|127709_129485_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.4e-15	33.9
WP_062060931.1\|129601_131101_-	catalase	A0A2K9L0T1	Tupanvirus	3.4e-87	42.4
WP_062060934.1\|131200_132667_-	glycerol kinase	NA	NA	NA	NA
WP_082635275.1\|132663_134148_-	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_062060940.1\|134323_134704_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	7.5e-15	48.1

DBSCAN-SWA_3

145275 : 257767

108

Escherichia_phage(28.0%)

transposase,tRNA,integrase

attL 145220:145279|attR 248249:248264

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
145220:145279	attL	NA	NA	NA	NA
WP_001389365.1\|145275_146040_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
145220:145279	attL	NA	NA	NA	NA
WP_062060961.1\|147308_147632_-	type VI secretion protein	NA	NA	NA	NA
WP_082635276.1\|147713_148028_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_062060964.1\|148075_148789_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_062060967.1\|148994_149282_-	hypothetical protein	NA	NA	NA	NA
WP_062068238.1\|149569_150259_+	hypothetical protein	NA	NA	NA	NA
WP_062068240.1\|150297_150855_+	thermonuclease family protein	NA	NA	NA	NA
WP_062068242.1\|151147_151429_+	hypothetical protein	NA	NA	NA	NA
WP_062060970.1\|151514_152207_+	hypothetical protein	NA	NA	NA	NA
WP_082635046.1\|152269_152548_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_062060973.1\|152547_152844_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_062060976.1\|152972_154481_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_062060979.1\|154840_155179_-	DUF423 domain-containing protein	NA	NA	NA	NA
WP_062060982.1\|155336_155540_-	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|156298_157063_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_051743924.1\|157864_158341_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_062060991.1\|158409_159630_+	hypothetical protein	NA	NA	NA	NA
WP_062060995.1\|159777_161001_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_082635047.1\|162586_163117_+	transporter	NA	NA	NA	NA
WP_081876336.1\|163162_163498_+	hypothetical protein	NA	NA	NA	NA
WP_148564624.1\|164102_164621_+	flavin reductase family protein	NA	NA	NA	NA
WP_048574815.1\|166625_166832_+	dodecin domain-containing protein	NA	NA	NA	NA
WP_030092541.1\|167721_169227_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_062061004.1\|169223_170093_+	AAA domain-containing protein	U5N3V8	Enterobacteria_phage	1.1e-34	36.1
WP_030539573.1\|170223_171846_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_148564655.1\|171967_173139_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_030091690.1\|173522_174362_+	alpha/beta fold hydrolase	A0A1C9KBI6	Skunkpox_virus	1.3e-06	33.1
WP_030091689.1\|174389_175085_+	VOC family protein	NA	NA	NA	NA
WP_048575098.1\|175085_176324_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_062061007.1\|176418_176817_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_001389365.1\|176782_177547_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_156415185.1\|177426_178110_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.8e-44	53.9
WP_062061010.1\|179378_180728_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_030093123.1\|182056_183127_-	phosphotransferase	NA	NA	NA	NA
WP_030093124.1\|183123_184314_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_030093125.1\|184333_185089_-	glucose 1-dehydrogenase	NA	NA	NA	NA
WP_001389365.1\|185191_185956_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_062061016.1\|186090_187269_-	hypothetical protein	NA	NA	NA	NA
WP_048575003.1\|187599_188106_-	hypothetical protein	NA	NA	NA	NA
WP_082635048.1\|188105_189326_-	phosphotransferase family protein	NA	NA	NA	NA
WP_030092905.1\|189344_190394_-	TIGR03857 family LLM class F420-dependent oxidoreductase	NA	NA	NA	NA
WP_081876370.1\|190528_190972_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_081876369.1\|190731_191799_-	hypothetical protein	NA	NA	NA	NA
WP_156415186.1\|191844_192000_-	hypothetical protein	NA	NA	NA	NA
WP_156415187.1\|192137_192731_-	TonB-dependent receptor	NA	NA	NA	NA
WP_001389365.1\|192610_193375_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_030092754.1\|193965_195153_-	CoA transferase	NA	NA	NA	NA
192555:193437	attR	NA	NA	NA	NA
WP_030092753.1\|195250_196441_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
192555:193437	attR	NA	NA	NA	NA
WP_082635279.1\|196703_198305_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	5.7e-80	38.4
WP_030092751.1\|198401_199550_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_030092750.1\|199659_200454_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_030092749.1\|200848_202090_+	thiolase family protein	NA	NA	NA	NA
WP_030092748.1\|202104_202881_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_006961814.1\|203002_205912_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	7.4e-62	24.9
WP_006961816.1\|206054_206921_+	recombinase family protein	E5FFF9	Burkholderia_phage	4.8e-25	40.0
WP_062061028.1\|207138_207423_-	hypothetical protein	NA	NA	NA	NA
WP_062061031.1\|207422_208058_-	AAA family ATPase	Q8H9K9	Vibrio_phage	1.1e-10	35.9
WP_156415188.1\|208876_209634_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_062061041.1\|209808_211425_+	glycosyltransferase	NA	NA	NA	NA
WP_156415189.1\|211442_212201_-	hypothetical protein	NA	NA	NA	NA
WP_016746447.1\|213366_216258_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.4e-190	38.8
WP_008832583.1\|216383_217004_+	recombinase family protein	E5FFF9	Burkholderia_phage	1.6e-38	49.7
WP_062061046.1\|217000_217531_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_062061052.1\|218565_219126_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	2.7e-45	79.3
WP_062061055.1\|219516_219795_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_059153568.1\|219782_220076_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_148649541.1\|220204_220450_-	WGR domain-containing protein	NA	NA	NA	NA
WP_062061067.1\|220922_222296_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_148649533.1\|222197_223028_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_156415190.1\|222776_223775_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_030092871.1\|223735_224107_-	hypothetical protein	NA	NA	NA	NA
WP_030092870.1\|224140_224506_-	hypothetical protein	NA	NA	NA	NA
WP_030092869.1\|224502_224835_-	hypothetical protein	NA	NA	NA	NA
WP_030092868.1\|224865_225096_-	BrnA antitoxin family protein	NA	NA	NA	NA
WP_062061072.1\|225495_226065_-	PIN domain-containing protein	K4HZX4	Acidithiobacillus_phage	6.3e-42	48.4
WP_030092865.1\|226061_226526_-	helix-turn-helix domain-containing protein	K4ICM4	Acidithiobacillus_phage	1.8e-26	48.6
WP_062061074.1\|226720_227029_+	BrnT family toxin	NA	NA	NA	NA
WP_062061077.1\|227009_227342_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_062061080.1\|227631_228351_-	hypothetical protein	NA	NA	NA	NA
WP_062061082.1\|228347_228782_-	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_062068248.1\|228785_229022_-	hypothetical protein	NA	NA	NA	NA
WP_062061085.1\|229093_232255_-	Ti-type conjugative transfer relaxase TraA	NA	NA	NA	NA
WP_062061088.1\|232428_232677_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_062068250.1\|232771_233002_+	conjugal transfer protein TraD	NA	NA	NA	NA
WP_062061091.1\|232994_233549_+	AAA family ATPase	NA	NA	NA	NA
WP_062061094.1\|233541_233805_+	hypothetical protein	NA	NA	NA	NA
WP_062061097.1\|233806_235471_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_006961816.1\|236571_237438_-	recombinase family protein	E5FFF9	Burkholderia_phage	4.8e-25	40.0
WP_006961814.1\|237580_240490_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	7.4e-62	24.9
WP_156415191.1\|240621_241620_+	RepB family plasmid replication initiator protein	A0A0K1LLD0	Rhodobacter_phage	1.6e-56	40.4
WP_030093241.1\|241682_242000_-	hypothetical protein	NA	NA	NA	NA
WP_044663650.1\|241996_242650_-	AAA family ATPase	D4HTX7	Vibrio_phage	5.1e-19	29.0
WP_156415192.1\|242747_242906_-	hypothetical protein	NA	NA	NA	NA
WP_017501687.1\|243038_243320_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_062061101.1\|243288_243609_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_062061104.1\|243611_244232_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_082635050.1\|244228_244711_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001389365.1\|244774_245539_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_062068254.1\|246526_247117_-	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_062061107.1\|247134_247617_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.0e-32	50.0
WP_062061110.1\|247665_248544_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_156415193.1\|248692_250741_+	transglycosylase SLT domain-containing protein	K4NWI2	Pseudomonas_phage	4.3e-24	29.4
WP_062061115.1\|250761_251244_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_062068256.1\|251412_251922_+	YfiR family protein	NA	NA	NA	NA
WP_062061119.1\|251925_253146_+	diguanylate cyclase	NA	NA	NA	NA
WP_082635280.1\|253165_253696_+	OmpA family protein	NA	NA	NA	NA
WP_062061124.1\|255094_255889_-	polyphosphate kinase	NA	NA	NA	NA
WP_062061127.1\|255982_257767_-\|tRNA	aspartate--tRNA ligase	A0A2K9L0E9	Tupanvirus	4.9e-08	37.2

DBSCAN-SWA_4

333132 : 386896

uncultured_Caudovirales_phage(23.53%)

transposase,integrase,protease

attL 385566:385595|attR 388879:388908

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062061320.1\|333132_333765_-\|integrase	tyrosine-type recombinase/integrase	A0A0A8WE94	Clostridium_phage	4.9e-11	29.8
WP_062061323.1\|333878_334169_+	plasmid maintenance system killer	A0A2L1IV28	Escherichia_phage	3.7e-14	45.2
WP_082635281.1\|334170_334461_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_062061329.1\|334666_335563_-	hypothetical protein	NA	NA	NA	NA
WP_082635060.1\|335651_336893_-	S8 family serine peptidase	NA	NA	NA	NA
WP_062061332.1\|337032_337476_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_062061335.1\|337472_338180_+	hypothetical protein	NA	NA	NA	NA
WP_062061339.1\|338449_340069_-	chaperonin GroEL	A0A240F779	uncultured_virus	1.4e-174	59.7
WP_062061342.1\|340124_340439_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	3.1e-22	62.0
WP_062061345.1\|340689_340926_+	hypothetical protein	NA	NA	NA	NA
WP_062061348.1\|340922_341192_+	protein usg	NA	NA	NA	NA
WP_062061351.1\|341188_341563_+	hypothetical protein	NA	NA	NA	NA
WP_062062632.1\|341606_342170_-	hypothetical protein	NA	NA	NA	NA
WP_062061357.1\|342205_342694_-	hypothetical protein	NA	NA	NA	NA
WP_062068276.1\|342677_343199_-	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	6.7e-14	32.7
WP_062061360.1\|343283_343757_-	Hsp20 family protein	A0A1D8KN82	Synechococcus_phage	1.2e-22	40.7
WP_156415324.1\|344192_344831_+	BAX inhibitor (BI)-1/YccA family protein	NA	NA	NA	NA
WP_062061365.1\|344847_345489_+	hypothetical protein	NA	NA	NA	NA
WP_062061368.1\|345485_345731_+	hypothetical protein	NA	NA	NA	NA
WP_082635282.1\|345850_346588_+\|protease	trypsin-like serine protease	W5SAB9	Pithovirus	3.5e-16	30.0
WP_082635061.1\|346616_347666_-	PAS domain S-box protein	NA	NA	NA	NA
WP_062068283.1\|349007_350240_-	amino acid permease	NA	NA	NA	NA
WP_156415197.1\|350269_350860_-	hypothetical protein	NA	NA	NA	NA
WP_062061374.1\|350783_352043_-	ferredoxin reductase family protein	NA	NA	NA	NA
WP_062061376.1\|352235_354005_-	sulfate permease	A0A2H4J153	uncultured_Caudovirales_phage	5.6e-12	24.7
WP_062061378.1\|354028_354448_-	TIGR01244 family phosphatase	NA	NA	NA	NA
WP_062061379.1\|354444_354879_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_062061383.1\|354882_355317_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_062061386.1\|355316_356246_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_062061389.1\|356242_356602_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062061392.1\|356827_357724_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_062061395.1\|357844_358453_+	hypothetical protein	NA	NA	NA	NA
WP_062061398.1\|358599_359232_-\|integrase	tyrosine-type recombinase/integrase	A0A0A8WF93	Clostridium_phage	1.9e-07	30.6
WP_062061401.1\|359476_360217_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.7e-77	67.8
WP_062068285.1\|360230_361301_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_082635062.1\|361321_362116_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	2.6e-41	61.6
WP_062061404.1\|362257_363304_+	SidA/IucD/PvdA family monooxygenase	A0A2H4J2Q2	uncultured_Caudovirales_phage	4.5e-94	61.2
WP_062061410.1\|363668_364010_+	cupin domain-containing protein	NA	NA	NA	NA
WP_062061413.1\|364066_366310_+	nitric-oxide reductase large subunit	NA	NA	NA	NA
WP_062061416.1\|366571_367204_+\|integrase	tyrosine-type recombinase/integrase	A0A0A8WF93	Clostridium_phage	4.6e-09	29.9
WP_062061419.1\|367291_367711_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_062061422.1\|367707_370071_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.6e-83	36.0
WP_156415198.1\|370223_370565_+	hypothetical protein	NA	NA	NA	NA
WP_062061428.1\|370596_370842_+	hypothetical protein	NA	NA	NA	NA
WP_062061431.1\|370927_372736_+	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_062061434.1\|372732_373749_+	copper resistance protein B	NA	NA	NA	NA
WP_125989582.1\|374169_375533_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_156415199.1\|375593_375746_+	hypothetical protein	NA	NA	NA	NA
WP_062061437.1\|375742_376819_+	SAVED domain-containing protein	NA	NA	NA	NA
WP_062061440.1\|377042_379034_-	relaxase/mobilization nuclease and DUF3363 domain-containing protein	NA	NA	NA	NA
WP_156415200.1\|379325_379463_-	hypothetical protein	NA	NA	NA	NA
WP_062061446.1\|379715_380372_-	lytic transglycosylase domain-containing protein	A0A0H3V0Q1	Geobacillus_virus	4.6e-12	40.5
WP_062061449.1\|380359_380947_-	S26 family signal peptidase	NA	NA	NA	NA
WP_062061452.1\|380939_381185_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_062061455.1\|381368_381701_-	DUF736 domain-containing protein	NA	NA	NA	NA
WP_062061458.1\|382234_382876_+	hypothetical protein	NA	NA	NA	NA
WP_062061461.1\|382947_384753_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	1.4e-05	31.7
WP_062061464.1\|384851_385259_-	DUF2958 domain-containing protein	NA	NA	NA	NA
385566:385595	attL	NA	NA	NA	NA
WP_062061472.1\|385684_386896_+\|integrase	tyrosine-type recombinase/integrase	A0A2D2W391	Mycobacterium_phage	6.8e-09	28.4
WP_062061472.1\|385684_386896_+\|integrase	tyrosine-type recombinase/integrase	A0A2D2W391	Mycobacterium_phage	6.8e-09	28.4
388879:388908	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1879805 : 1885324

uncultured_Mediterranean_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062064168.1\|1879805_1880588_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.4e-30	31.6
WP_062064170.1\|1880584_1881178_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.8e-39	44.4
WP_062064171.1\|1881206_1881443_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	6.7e-06	75.0
WP_062064173.1\|1881470_1881875_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_062064174.1\|1881871_1882648_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.3e-45	41.0
WP_062064176.1\|1882715_1882844_-	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_062064178.1\|1883168_1884113_-	cell wall hydrolase	A0A0S1WEP8	Vibrio_phage	2.4e-09	30.2
WP_062068610.1\|1884328_1885324_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	2.9e-50	41.0

DBSCAN-SWA_6

3496453 : 3542012

Pseudomonas_phage(15.79%)

protease,head,portal,tRNA,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062066786.1\|3496453_3497731_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-97	47.2
WP_062066789.1\|3497821_3498586_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.7e-37	37.4
WP_062068931.1\|3498651_3499650_+	M23 family metallopeptidase	Q8SBN9	Clostridium_phage	4.0e-15	36.2
WP_062066794.1\|3499646_3500708_+	potassium channel family protein	NA	NA	NA	NA
WP_062068933.1\|3500754_3502131_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_156415376.1\|3502173_3502995_-	DUF4163 domain-containing protein	NA	NA	NA	NA
WP_062066800.1\|3503021_3503225_-	hypothetical protein	NA	NA	NA	NA
WP_062066803.1\|3503370_3504759_+	leucyl aminopeptidase family protein	Q6GYZ8	Mycoplasma_phage	2.0e-28	30.6
WP_062066806.1\|3504827_3505235_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062066809.1\|3505194_3506103_+	glycoside hydrolase	A0A1W6DXV0	Rhodococcus_phage	6.6e-09	47.6
WP_062066812.1\|3506099_3507044_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_062068935.1\|3507062_3507266_-	hypothetical protein	NA	NA	NA	NA
WP_062066815.1\|3507735_3509064_+	sorbosone dehydrogenase family protein	NA	NA	NA	NA
WP_062066817.1\|3509071_3509887_-	ATP-binding protein	NA	NA	NA	NA
WP_062066821.1\|3509996_3510953_+	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	4.6e-37	37.2
WP_062066825.1\|3510956_3511223_-	hypothetical protein	NA	NA	NA	NA
WP_062066828.1\|3511310_3511844_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_062066831.1\|3511886_3513587_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	3.7e-21	22.5
WP_062066834.1\|3513724_3514408_-	DUF1013 domain-containing protein	NA	NA	NA	NA
WP_062066837.1\|3514522_3515551_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_062066840.1\|3515562_3516429_-	UDP-2,3-diacylglucosamine diphosphatase	A0A218MKA7	uncultured_virus	1.4e-64	49.0
WP_062066843.1\|3516530_3517535_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA
WP_062066846.1\|3517633_3517831_+	DUF1192 domain-containing protein	NA	NA	NA	NA
WP_062066849.1\|3518002_3520321_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.7e-176	43.8
WP_062066852.1\|3520445_3521075_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_062068937.1\|3521126_3521867_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_062066855.1\|3521987_3522518_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
WP_062068939.1\|3522591_3523137_-	superoxide dismutase family protein	NA	NA	NA	NA
WP_062066858.1\|3523707_3524757_-	OmpA family protein	NA	NA	NA	NA
WP_062066861.1\|3524935_3525439_-	DUF2793 domain-containing protein	NA	NA	NA	NA
WP_062066864.1\|3525468_3527676_-	hypothetical protein	A0A1W6DWX7	Sphingobium_phage	1.9e-33	46.5
WP_062066867.1\|3527689_3528094_-	hypothetical protein	NA	NA	NA	NA
WP_062066870.1\|3528090_3528906_-	DUF2163 domain-containing protein	A0A1V0DY93	Dinoroseobacter_phage	8.8e-37	33.1
WP_062066873.1\|3528902_3531233_-	DUF2460 domain-containing protein	A0A2H4P7I1	Pseudomonas_phage	3.0e-37	32.5
WP_062066876.1\|3531229_3531793_-\|tail	tail tape measure protein	M4SQV9	Cyanophage	2.9e-07	34.4
WP_062066879.1\|3531816_3532026_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_062066882.1\|3532022_3532337_-	gene transfer agent family protein	NA	NA	NA	NA
WP_062066885.1\|3532333_3532741_-\|tail	phage tail protein	NA	NA	NA	NA
WP_062066887.1\|3532797_3533121_+	hypothetical protein	NA	NA	NA	NA
WP_062066890.1\|3533248_3533656_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_156415295.1\|3533652_3533859_-	hypothetical protein	NA	NA	NA	NA
WP_062066893.1\|3533855_3534398_-	hypothetical protein	NA	NA	NA	NA
WP_062066896.1\|3534394_3534673_-	hypothetical protein	NA	NA	NA	NA
WP_156415296.1\|3534832_3536482_-	hypothetical protein	A0A1S5R3Z4	Pseudomonas_phage	1.6e-29	36.7
WP_062066902.1\|3536552_3537680_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	4.1e-77	43.1
WP_062066906.1\|3537781_3538216_-\|head,protease	HK97 family phage prohead protease	A0A2H4JAI0	uncultured_Caudovirales_phage	2.3e-12	37.5
WP_062068943.1\|3538212_3538533_-	hypothetical protein	K4I011	Acidithiobacillus_phage	4.4e-08	41.4
WP_062066909.1\|3538758_3539889_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	2.1e-49	37.3
WP_062066912.1\|3540290_3540629_-	hypothetical protein	NA	NA	NA	NA
WP_062068945.1\|3540692_3542012_-	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	1.7e-77	41.1

DBSCAN-SWA_7

3844736 : 3886530

Synechococcus_phage(16.67%)

protease,portal,tail,transposase,capsid,head,integrase,terminase

attL 3874380:3874399|attR 3884571:3884590

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_125989582.1\|3844736_3846099_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_082635261.1\|3846842_3847646_+	SDR family oxidoreductase	A0A0G2Y8L6	Acanthamoeba_polyphaga_mimivirus	4.9e-08	36.8
WP_156415308.1\|3847697_3848720_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_062067664.1\|3848937_3850143_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_062067667.1\|3850226_3850796_+	hypothetical protein	NA	NA	NA	NA
WP_156415309.1\|3850826_3851663_+	hypothetical protein	NA	NA	NA	NA
WP_062067673.1\|3851685_3851871_+	hypothetical protein	NA	NA	NA	NA
WP_156415310.1\|3852270_3853548_+	DUF1214 domain-containing protein	NA	NA	NA	NA
WP_062067683.1\|3853596_3855888_+	TonB-dependent receptor	NA	NA	NA	NA
WP_156415311.1\|3856325_3856583_+	hypothetical protein	NA	NA	NA	NA
WP_062067692.1\|3856702_3857389_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_062067695.1\|3857712_3858852_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_062067698.1\|3858934_3859528_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_062067701.1\|3859581_3860517_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_062067704.1\|3860542_3861391_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_062067707.1\|3861444_3862554_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_082635262.1\|3862846_3864532_+	acyl--CoA ligase	A0A2K9KZV5	Tupanvirus	5.5e-09	24.7
WP_062069008.1\|3864567_3865704_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	3.9e-51	36.4
WP_062067713.1\|3865748_3866240_-	flavin reductase family protein	NA	NA	NA	NA
WP_062067716.1\|3866247_3867501_-	cytochrome P450	NA	NA	NA	NA
WP_062067719.1\|3867515_3868598_-	alcohol dehydrogenase catalytic domain-containing protein	E3SJ82	Synechococcus_phage	3.4e-20	26.1
WP_062067722.1\|3868933_3869680_+	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	1.4e-17	32.9
WP_062067725.1\|3869701_3870472_+	crotonase	NA	NA	NA	NA
WP_062067728.1\|3871042_3873418_+	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_156415312.1\|3873995_3874133_-	hypothetical protein	NA	NA	NA	NA
3874380:3874399	attL	NA	NA	NA	NA
WP_062067731.1\|3874400_3875561_-\|integrase	site-specific integrase	A0A1L6BZH2	Pasteurella_phage	5.5e-16	24.9
WP_062067734.1\|3875538_3876153_-	hypothetical protein	NA	NA	NA	NA
WP_062067737.1\|3876267_3876450_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_156415380.1\|3876466_3876667_+	hypothetical protein	NA	NA	NA	NA
WP_062067743.1\|3876731_3877019_+	hypothetical protein	NA	NA	NA	NA
WP_062067746.1\|3877021_3877231_+	hypothetical protein	NA	NA	NA	NA
WP_062067749.1\|3877230_3878079_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_062067752.1\|3878090_3878564_+	hypothetical protein	NA	NA	NA	NA
WP_082635263.1\|3878556_3878952_+	HNH endonuclease	NA	NA	NA	NA
WP_082635343.1\|3878971_3880555_+\|terminase	terminase large subunit	K7P7I2	Enterobacteria_phage	4.9e-92	38.8
WP_062067769.1\|3880551_3880923_-	hypothetical protein	NA	NA	NA	NA
WP_062067772.1\|3881043_3882249_+\|capsid	phage major capsid protein	G8EXZ9	Synechococcus_phage	2.5e-32	32.4
WP_062067775.1\|3882248_3882794_+\|head,protease	HK97 family phage prohead protease	A0A2K9VGN9	Pontimonas_phage	2.2e-28	49.0
WP_062067778.1\|3882784_3883981_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	1.2e-47	32.7
WP_082635264.1\|3883865_3884240_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_082635265.1\|3884244_3884559_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	2.4e-06	34.7
WP_062067787.1\|3884963_3885440_-	DUF1178 family protein	NA	NA	NA	NA
3884571:3884590	attR	NA	NA	NA	NA
WP_062067790.1\|3885436_3886267_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_062067793.1\|3886272_3886530_-	glutaredoxin 3	V9QKN6	Rhizobium_phage	8.6e-15	53.2

DBSCAN-SWA_8

3951994 : 4009129

Acanthocystis_turfacea_Chlorella_virus(20.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062067939.1\|3951994_3953320_+\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_062067941.1\|3953312_3954251_+	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	4.4e-16	42.0
WP_062067943.1\|3954275_3954935_+	septation protein IspZ	NA	NA	NA	NA
WP_062067945.1\|3954968_3955526_-	hypothetical protein	A0A1B1IVR4	uncultured_Mediterranean_phage	6.2e-42	61.2
WP_062067947.1\|3955742_3956357_+	superoxide dismutase	NA	NA	NA	NA
WP_062067949.1\|3956485_3956926_+	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_062067951.1\|3956930_3957266_-	hypothetical protein	NA	NA	NA	NA
WP_062067953.1\|3957238_3957787_-	J domain-containing protein	NA	NA	NA	NA
WP_062067955.1\|3958265_3958964_-	N-acetylmuramoyl-L-alanine amidase	A0A076YN96	Rhizobium_phage	8.9e-14	30.7
WP_062069014.1\|3959102_3959954_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_062067957.1\|3959980_3961078_-	chemotaxis-specific protein-glutamate methyltransferase CheB	NA	NA	NA	NA
WP_062067959.1\|3961219_3961585_-	response regulator	NA	NA	NA	NA
WP_062067961.1\|3961667_3962105_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_062067967.1\|3962104_3964477_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_062067969.1\|3964605_3964881_-	hypothetical protein	NA	NA	NA	NA
WP_062067971.1\|3965027_3965456_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_062067973.1\|3965558_3966161_+	LemA family protein	NA	NA	NA	NA
WP_062067975.1\|3966168_3966960_+	methanol dehydrogenase	NA	NA	NA	NA
WP_062069023.1\|3966959_3967637_+	hypothetical protein	NA	NA	NA	NA
WP_062067977.1\|3967633_3968176_+	NUDIX hydrolase	NA	NA	NA	NA
WP_062067979.1\|3968206_3968659_-	hypothetical protein	NA	NA	NA	NA
WP_062067981.1\|3968752_3969316_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062067983.1\|3969375_3970560_+	glycosyltransferase	NA	NA	NA	NA
WP_062067985.1\|3970599_3971379_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_062067987.1\|3971385_3972132_-	HAD-IIB family hydrolase	NA	NA	NA	NA
WP_062067989.1\|3972261_3972969_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_062067991.1\|3972958_3973570_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.6e-17	32.2
WP_062067993.1\|3976389_3977052_+	hypothetical protein	NA	NA	NA	NA
WP_156415314.1\|3977048_3977678_+	HAD-IA family hydrolase	M1I080	Acanthocystis_turfacea_Chlorella_virus	7.7e-33	41.2
WP_062067995.1\|3977679_3979209_+	NTP transferase domain-containing protein	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	3.9e-54	47.7
WP_062067996.1\|3979213_3979906_+	hypothetical protein	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	3.1e-06	27.9
WP_062067998.1\|3980371_3980590_-	hypothetical protein	NA	NA	NA	NA
WP_062068000.1\|3980589_3982233_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.1e-109	44.0
WP_062068002.1\|3982306_3982648_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.3e-31	59.2
WP_062068004.1\|3982644_3983010_-\|transposase	transposase	NA	NA	NA	NA
WP_156415315.1\|3983087_3984264_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.8e-46	40.4
WP_062068010.1\|3984373_3985372_-	hypothetical protein	NA	NA	NA	NA
WP_062068012.1\|3985368_3986757_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	3.0e-05	32.2
WP_156415382.1\|3987150_3988185_+	hypothetical protein	NA	NA	NA	NA
WP_062068013.1\|3988192_3988993_+	ABC transporter permease	NA	NA	NA	NA
WP_082635266.1\|3988989_3989652_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.8e-09	27.1
WP_156415316.1\|3989681_3991691_+	hypothetical protein	NA	NA	NA	NA
WP_156415317.1\|3991858_3993030_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.8e-46	40.4
WP_062069027.1\|3993163_3994402_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_062069029.1\|3994440_3995607_-	polysaccharide export protein	NA	NA	NA	NA
WP_062068020.1\|3996161_3997250_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_156415318.1\|3997329_3997734_+	hypothetical protein	NA	NA	NA	NA
WP_156415319.1\|3997764_3998841_+	ABC transporter permease	NA	NA	NA	NA
WP_062068022.1\|3998882_3999689_-	aminoglycoside phosphotransferase family protein	NA	NA	NA	NA
WP_156415320.1\|3999835_4000651_+	phosphoheptose isomerase	NA	NA	NA	NA
WP_062068026.1\|4000668_4001775_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.5e-23	25.4
WP_062068028.1\|4001787_4003062_-	capsular biosynthesis protein	NA	NA	NA	NA
WP_062068029.1\|4003045_4004692_-	capsule biosynthesis protein	NA	NA	NA	NA
WP_062068031.1\|4004789_4006085_-	glycosyltransferase family 4 protein	J7Q7I8	Aeropyrum_coil-shaped_virus	3.4e-06	50.0
WP_062068032.1\|4006139_4006580_-	HIT family protein	NA	NA	NA	NA
WP_062069031.1\|4006591_4007242_-	CoA transferase subunit B	NA	NA	NA	NA
WP_062068033.1\|4007241_4007952_-	CoA transferase subunit A	NA	NA	NA	NA
WP_062068034.1\|4008031_4009129_-\|transposase	IS630 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP013269

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 15895

Salmonella_phage(28.57%)

integrase,transposase

attL 12614:12631|attR 15478:15495

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062069530.1\|206_3164_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.8e-236	44.7
WP_017503520.1\|4187_5147_-	replication initiator protein A	NA	NA	NA	NA
WP_017503521.1\|5143_5530_-	hypothetical protein	NA	NA	NA	NA
WP_017503522.1\|5529_6183_-	ParA family protein	A0A0M3ULE3	Mycobacterium_phage	2.3e-11	31.8
WP_017503523.1\|6289_6934_-	transcription elongation protein SprT	A0A1V0DYF5	Dinoroseobacter_phage	7.2e-42	48.4
WP_038293132.1\|7386_7662_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_017503525.1\|7658_8057_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_017503526.1\|8059_8668_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_082635371.1\|8940_9333_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001389365.1\|9357_10122_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_082635372.1\|10307_11366_+	MFS transporter	NA	NA	NA	NA
WP_062069537.1\|11455_12247_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_062069541.1\|12243_12795_-	recombinase family protein	A0A1S6L009	Salmonella_phage	5.0e-44	55.4
12614:12631	attL	NA	NA	NA	NA
WP_042853443.1\|12847_13669_-	ATP-binding protein	NA	NA	NA	NA
WP_053085608.1\|13668_15150_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0M4U788	Ralstonia_phage	5.2e-19	27.2
WP_048575153.1\|15298_15895_+	recombinase family protein	E5FFF9	Burkholderia_phage	3.5e-27	36.8
15478:15495	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP013265

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013265_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013265_1

2550-2790

Orphan

Consensus_repeat	Method
GGTTTTCCGTGTCAAAGCACGAA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP013265_1

>merge|NZ_CP013265|1|2550-2790|CRISPRCasFinder
GGTTTTCCGTGTCAAAGCACGAATCGTCCGTCCCCCTGCAGCCGTCGACGAGATCCTCCCTCTCAGCAGGGTTTTCCGTGTCAAAGCACGAACTCTTCTTTGGGACCGGGGCGACCGGACTTGGCCTACGCTCGCCATCAGGTAGTTTTCCGTGTCAAAACACGAATTGTTCTGCGGAACGGGTGCAAGCGGACTCTGCCTACGATCATCGCAAGCACACTTTTCCGTGTCAAAGCACGAA

>NZ_CP013265|1|1|2550-2790|CRISPRCasFinder
GGTTTTCCGTGTCAAAGCACGAA	TCGTCCGTCCCCCTGCAGCCGTCGACGAGATCCTCCCTCTCAGCAG
GGTTTTCCGTGTCAAAGCACGAA	CTCTTCTTTGGGACCGGGGCGACCGGACTTGGCCTACGCTCGCCATCAGGT
AGTTTTCCGTGTCAAAACACGAA	TTGTTCTGCGGAACGGGTGCAAGCGGACTCTGCCTACGATCATCGCAAGCAC
ACTTTTCCGTGTCAAAGCACGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013265.1\|WP_062069058.1\|6545_6815_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013265.1\|WP_062069068.1\|14885_15815_+\|DUF1738-domain-containing-protein	unknown	unknown	gnl\|CDD\|226680
NZ_CP013265.1\|WP_062069051.1\|851_1364_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013265.1\|WP_062069066.1\|12521_14795_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|319263
NZ_CP013265.1\|WP_062069053.1\|1592_2474_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	gnl\|CDD\|370826
NZ_CP013265.1\|WP_156415394.1\|312_747_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013265.1\|WP_062069062.1\|7271_8138_+\|virulence-associated-protein-E	unknown	unknown	gnl\|CDD\|274285
NZ_CP013265.1\|WP_062069057.1\|5248_6541_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013265.1\|WP_156415404.1\|4245_4992_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594
NZ_CP013265.1\|WP_062069070.1\|15839_16484_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013265.1\|WP_062069055.1\|3177_3981_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP013265.1\|WP_062069060.1\|7035_7275_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013265.1\|WP_062069064.1\|8172_12396_+\|methylase	unknown	unknown	gnl\|CDD\|372772

Protein	Function_ID	Function_description	E-value
NZ_CP013265.1\|WP_156415404.1\|4245_4992_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	2.43993e-37
NZ_CP013265.1\|WP_062069062.1\|7271_8138_+\|virulence-associated-protein-E	gnl\|CDD\|274285	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.	3.86827e-10
NZ_CP013265.1\|WP_062069066.1\|12521_14795_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|319263	cd16406, ParB_N_like, ParB N-terminal, parA-binding, -like domain of bacterial and plasmid parABS partitioning systems. This family represents the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	3.04507e-26
NZ_CP013265.1\|WP_062069053.1\|1592_2474_+\|RepB-family-plasmid-replication-initiator-protein	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	2.89176e-59
NZ_CP013265.1\|WP_062069055.1\|3177_3981_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	2.32099e-06
NZ_CP013265.1\|WP_062069068.1\|14885_15815_+\|DUF1738-domain-containing-protein	gnl\|CDD\|226680	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair].	2.15988e-80
NZ_CP013265.1\|WP_062069064.1\|8172_12396_+\|methylase	gnl\|CDD\|372772	pfam13872, AAA_34, P-loop containing NTP hydrolase pore-1.	2.23938e-148

>NZ_CP013265.1|WP_062069053.1|1592_2474_+|RepB-family-plasmid-replication-initiator-protein
MEIQQRDLFELDSPLYADVHGERTVAEFPFFALSKRPQMTPMVFENGSARIEINPSKTGVATIYDKEILLYIASLMAERMERGEKVDRVMSFTANDLFRVTSTNPSARSYDMLKASLARLQGTQIITNIETGGEGSDSAFSWLLKADIKYIKASNGDRRVKKIEVMVCDWLYRAILQDKRIAAYHLGFFKLGPIERRLYELAKFNCVDETGFEIDMETLAERVGCATDKRGLEHFKRQLRVVAEDQTLPEYEVRLAEEKIPSARGGRPKIKTIVLFSSIPIPQLDNQTLPLFD
>NZ_CP013265.1|WP_062069051.1|851_1364_+|hypothetical-protein
MGAPSFETDQLTESQVQSFGFVDYVLCRMKQDGLQYRDLALKIGLSKTRTHNVFHPEPSKRRPLYVHEFRAVAAALDLSPLEAALVSDLYSGAGDANEGVESQIKLYSGVLNRLHGHMKEVVERLGGLDWDDIRPSHGEWIIDLIISEIESAYADFAVRKEVRLRDRETF
>NZ_CP013265.1|WP_156415394.1|312_747_+|hypothetical-protein
MDVSEYYFRLTTECIRLHSNSCRKHSSFGDMINDRAELADSVTKRRAPQHIIKHLQMIPSKGGIPLEVEILESSSGKINRSTKVIEDAIGSSIEFADALSVIMFDFMVEANRTEVLLKIGLTSEEAGEYRKLLKHGAPGVKSIN
>NZ_CP013265.1|WP_062069055.1|3177_3981_+|helix-turn-helix-domain-containing-protein
MTMGIYAVGDTAQSVLSGVPVNTKKSRSGAKHRTGAPVRAGSLEANTFEETFFQVPSKGEPDRMLATARYALDAGRKLLREYKAGLRSLTASERLLTTLTASAVRIYEELTKLARLCAGKVYPSYDHLVEATGLGRSTVRRALAVLEVIGFIIRQRRFKRVEADGPGPRFKQTSNVYRILTPKSVHRYTPRWMRSAPPPADDDWRRSDEAEQVSAMVASLSCKEFAKMSVGGVLGGVLAQLGAAMDNKENRERQASARAKVALSCAS
>NZ_CP013265.1|WP_156415404.1|4245_4992_-|transglycosylase-SLT-domain-containing-protein
MPVAAPDAGIPEAFRVHDLSRRYVEYQMGQEFAASAEGQSEVAASYDVAAAGVAPVSSIAVPGWMKGQYPALAAVPYTPGCASIPYRPAGFLKPDAEARRAAYYGMMSAIACEHGIPTGLFDAMIIQESRYNPAAISKMKAYGLAQLMPGTAAQLGINPYDPVQNLRGGARYLRTQLDTFGQVHLALAAYNAGPGRVKGGAVPRIRETQGYVATILDNWSRLRGYGAVQQRARFVPEPKGRTVAVSSF
>NZ_CP013265.1|WP_062069057.1|5248_6541_+|hypothetical-protein
MWLVPRDTNGKGSNRIPLPPELRAALIRWYVGKGTVHDEKAGITLVQQARIGHKWIACDCLGADKAPAILTPAFLSEAETYYLRRLTSSKRPEHLPDCPFFRDQVTIRISEVRSRSTPLEPPSGFFEVLKPAPEKLAQRPEDDSNDDRTRHASIPRLARLLWRLMAAAGVNRIAPLAYREEWSIRHEFAALTRAAGLIEIAPGIQLEKAFWTHPKPLQARAVYATLRALEDRWPRDHAPQGFVLLYAKGIHGQEITLPDGDTVTIANRIQSPSVRGNPIAGPFLVIIVVGKYPEAKGYAPLRAYAQPILNGRLFAPVDSDFERDVLRTILRTQQELHGRGIDLAIDKPVFDTLTPDGPCRPDFLIEARSRETGEIRNLVVEAMGFKTEEYEASKAITHPRMAHLGQIVTIDRQDDDAHTGRRALLEGLGL
>NZ_CP013265.1|WP_062069058.1|6545_6815_-|hypothetical-protein
MSQFTPLEIANWMAIYLATSLCCAIAMVLSVSVALHELWKDRVWEDARSVKGAALLLPRIWWRWQKLYLLSTPVTLGIIGYFAASLSWR
>NZ_CP013265.1|WP_062069060.1|7035_7275_+|hypothetical-protein
MQRFVLFIGEPGSADIVDIYPSKPAAESALVDYVRARAAINGQDAHPDDDQAVASYFADSEAIYAIARVMPLANPGNDQ
>NZ_CP013265.1|WP_062069062.1|7271_8138_+|virulence-associated-protein-E
MTIVARRPSQKLIDIVGTLRGTWHGNRAMCRCPCHEDHEPSLSLRQGDRGILVTCFAGCDSIDVLRELDRIAITRHYEPPPDNARSGTANIERLWSQAQSVPGTLGERYLGSRFLLSVPGDVRFHPRCPHGAKPNTVFKPALLVAVREGQRLVALQRIFLDPETARYTAKATIGSLGMGAWRGGGIGPTIGLAEGFETARAWSRINNLPCWATLGSRRFGLVTIPDSVTELILAGDYDTAGRRAVNRASQRYASDKRVIRVDFPKGYKDWAQVLEALEAQKRGGGGEG
>NZ_CP013265.1|WP_062069064.1|8172_12396_+|methylase
MRDLLDLTHVNDAPAARTIATLLAADGAITRRQLNDAMVQAFGGSDADGRWTQRDSFEMLEHALALHLASDGHRVDTLADIAASSALMQRLPTQTVRSEEQIELQQFSTPADIAALAMLFAAIGAEDVVLEPSAGNGLLIAQAPRGRVLQLNEIDPRRRERLAHIFPDATITGHDGAALVALHADLPRPSVALMNPPFSRSIGRGADDLAALRHLQAAIKRVTPGGRVVAIMPDWFAPCARLRTAYETILTGCTVRASLRLEHCYRKHATDIAVRLYVIDKIAGELTPAVIERAAVPDFLDVVDIPARIKLEPSANLPVRSAPAMPTSLFGAARRTRVAAPRPYHAPKANAVLPVGYRKLETPAPLAEQVGVYLPYRPSRIVFDAAGEHPTALVESVAMGSIPAPIPTHIPHLPERTVSERLLSSSQLETVVYAGHAWNQTLPGTFKPAKEGVGLDIDPEGRKYRKGFFLGDGTGAGKGRQIAACILDNKLQGRRRHIFVTKNEPLLEDIRRDVTALGGLSADVQPLSNWKIGQPVTMDEGTLFVTYPGLRSGRSDATRLQQILDWAGPDFDGVIAFDEAHEMGGVAGGEGALGKTEGSQQGICGVLLQNHLPDARVLYASATGASDVNNLAYAVRLGLWGPETSFPNRESFISNIRQGGIAAMELVARDLKALGLYTARALSFAGVEYEVLRHELTPAQIEIYDTYCRAWQVINTNLAAALEATNVIDSLAGKTLNSGAKAAARSRLEGTRQRFFGQVLLSMKLPSVIAAIEGHLKQEHSVVVQLVTTAEAILDRRLSEMTAEERAEPQIELSPTDQIVDYLKRAFPTHQMEVFKDDTGALHSRPMRDEDGNPVHNPEAMAARDNLIEHLCALPPIKSGLDALIEHFGPDRIAEVTGRSKRLITGPDGRQKVETRNARTSQAEASAFMNDQKKVLVFSDAGGTGRSYHASLEAVNQDRRAHFLLEPGWRADRAIQGLGRTHRTHQASTPLFRPVTTDCKGELRFTSTIARRLDSLGALTRGQRQTGGQGLFDPADNLESDYARDALVSWFHLLYHGKLKSTNMTEFVDLSGLEITEGDGVLKEDLPPIQRWLNRLLALPIALQNKIFEEYLTLVETRVAAAREAGTLDVGVETITADSARVISDTVLRTDPGTGATTHLLTIEIARRKNPISLERILDMVRWRENPAFVMNAKSGRVALRSKANAWMDDEGEPILRIELQRPCSRKSMREADLFETAWEEIDEDTFRAKWQAEVEEAAEQLETETVRLATGLLLPIWSALPSDHLAVNRIVDKNGNSWLGRIVFEHSTVDLFTKLGLASSEEMPVEAITNAVLAGRRVNVTRPFAMAFKRSHVNGNPRVEIVDAPAAQLAWLKSLGAFTEIIQYRTRVFIPVAQAEAIIAEILKPS
>NZ_CP013265.1|WP_062069066.1|12521_14795_+|ParB/RepB/Spo0J-family-partition-protein
MIQTVKLAKLVLSDINVRTRGEDLIEQFAADISARGILQNLVVTSVKKPRGSYGVIAGSRRFRALMLLAERGEINAAEYDVPVLILSGGNDELSEASLAENFHHLNMSPADECRAFQYCLGQGGDIEAVAKRFGITRRFVEGRLRLANLAEPIFDALKSGEMTLDMAKAYASTESHERQLMVWKSYGANSYYTSADTIRRVIANDSMKSNDPIARLVGEEAYVAAGGVVDRDLFSDNGDRWTNPEIAQTLAAAKMEAEAKRIGEERGLAWIRPVASNSTWEVASGLFRVSLPSLPLTEAQIIRISEIEARQSIISLEMDDEETEQEAYEALDQEYDALTAELREVNRREKILPPELAPRVGLFLTLSQDGSMELDDTYYSETPLSVTMVEPDEDDEDAAETGEDGIEGESAGDAAPRVPTFRIEEGETATVTGNTKEVSPDEAAPGGKALSQVLLDQLAVQRRDVLGASMIANPALALDYMLFAMVDKTDAYKESCGTSIHAPHPEDPVRFDAYPQSVAHDYLAEVREGLDASWKEHSSIIARFDAFRALGDEAKTAWLAWTVAKSFKSKETYSNRQNALQNHLAGLLEVDVAKWWRPTSANFFDRVSKGALLSLLDEVGGPALSSRHASQKKGEISTSCEKLFAGDAVIETDVKEKALAWVPAAMRFTPAETTTDQDDDDTPEEAGERGSDGEAEDDLASLIDAALAGPDDGDDGEGVSIDDAGSAEGDDDQQIDDGSPAVYGDDDAVSQWAEAAE
>NZ_CP013265.1|WP_062069068.1|14885_15815_+|DUF1738-domain-containing-protein
MKTPRNSRDIAREVTNAIVSRLEAGTTPWTRSWSLTGEGGRPLRHEGTPYNGINCLWLWTIADARGYRSRYWMTARQAEELGARVRRKADPSMSIYASSFRKAGQPGLMGEATGQLIRFLRHYIVYNADEIEGLPDYYYARDVPPTPSLLSQRQDAIDSFFAAIPARVRHGGDEAYYSPLGDYIQLPRPGSFKSGDAYASTRGHESAHWSGSKDRLNRTFGKRFGDDAYCVEELCAELTSSYICAELGLPTELHDSHASYLAHWVRVLRADHSAIFTASAKAEQAFNYLRAFSLAEATAPVGDALKAAA
>NZ_CP013265.1|WP_062069070.1|15839_16484_+|hypothetical-protein
MGWLFMNRHHMGGHATPKSYLDAQFTFTNAPDDKGIARGARVLASSCPGNRVWYAAVQYSENGVPTEVIAMVCLVKWNPRDKEALHFGYKDMSESMGPCEAEAPENILRLLTPTTNEYSLDWRRRCLARLQKRSRKIVDGMRVKFPQAITFTDGFAGDEFTVVKRGATITFRPVGKYGHYRIRNFRDLEWSIVPETKVHRTIFAPRPSAAMPPP

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP013265_1	1.1\|2573\|46\|NZ_CP013265\|CRISPRCasFinder	2573-2618	46	NZ_CP013265	Sphingobium baderi strain DE-13 plasmid pDE1, complete sequence	2573-2618	1.0
NZ_CP013265_1	1.2\|2642\|51\|NZ_CP013265\|CRISPRCasFinder	2642-2692	51	NZ_CP013265	Sphingobium baderi strain DE-13 plasmid pDE1, complete sequence	2642-2692	1.0
NZ_CP013265_1	1.3\|2716\|52\|NZ_CP013265\|CRISPRCasFinder	2716-2767	52	NZ_CP013265	Sphingobium baderi strain DE-13 plasmid pDE1, complete sequence	2716-2767	1.0

1. spacer 1.1|2573|46|NZ_CP013265|CRISPRCasFinder matches to NZ_CP013265 (Sphingobium baderi strain DE-13 plasmid pDE1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgtccgtccccctgcagccgtcgacgagatcctccctctcagcag	CRISPR spacer
tcgtccgtccccctgcagccgtcgacgagatcctccctctcagcag	Protospacer
**********************************************

2. spacer 1.2|2642|51|NZ_CP013265|CRISPRCasFinder matches to NZ_CP013265 (Sphingobium baderi strain DE-13 plasmid pDE1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttctttgggaccggggcgaccggacttggcctacgctcgccatcaggt	CRISPR spacer
ctcttctttgggaccggggcgaccggacttggcctacgctcgccatcaggt	Protospacer
***************************************************

3. spacer 1.3|2716|52|NZ_CP013265|CRISPRCasFinder matches to NZ_CP013265 (Sphingobium baderi strain DE-13 plasmid pDE1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgttctgcggaacgggtgcaagcggactctgcctacgatcatcgcaagcac	CRISPR spacer
ttgttctgcggaacgggtgcaagcggactctgcctacgatcatcgcaagcac	Protospacer
****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

47668 : 113292

uncultured_Caudovirales_phage(22.22%)

transposase,integrase

attL 103124:103153|attR 106437:106466

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062069127.1\|47668_49081_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_082635348.1\|49561_49930_+	DUF3768 domain-containing protein	NA	NA	NA	NA
WP_008830216.1\|49990_50290_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_143560110.1\|50210_50687_+	hypothetical protein	NA	NA	NA	NA
WP_062069129.1\|51102_51654_+	hypothetical protein	NA	NA	NA	NA
WP_062069132.1\|51848_52043_+	hypothetical protein	NA	NA	NA	NA
WP_062069135.1\|52047_52512_-	hypothetical protein	NA	NA	NA	NA
WP_062069138.1\|52871_53102_+	hypothetical protein	NA	NA	NA	NA
WP_062069141.1\|53103_53457_+	hypothetical protein	NA	NA	NA	NA
WP_082635349.1\|53453_53723_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062069144.1\|53786_53987_+	hypothetical protein	NA	NA	NA	NA
WP_062069382.1\|53959_54265_-	integration host factor subunit alpha	Q2A099	Sodalis_phage	1.3e-09	37.1
WP_062069147.1\|54346_54934_-	hypothetical protein	NA	NA	NA	NA
WP_062069150.1\|55854_56301_+	DUF736 domain-containing protein	NA	NA	NA	NA
WP_082635350.1\|56375_57524_+	DUF2493 domain-containing protein	A0A0D4DBJ6	Vibrio_phage	1.2e-07	31.1
WP_062069153.1\|58057_58639_+	hypothetical protein	NA	NA	NA	NA
WP_062069156.1\|58981_59287_+	hypothetical protein	NA	NA	NA	NA
WP_062069159.1\|59506_59731_-	hypothetical protein	NA	NA	NA	NA
WP_062069162.1\|60337_60562_-	hypothetical protein	NA	NA	NA	NA
WP_062069164.1\|60560_62915_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_062069166.1\|62917_66178_+	conjugative relaxase	NA	NA	NA	NA
WP_062069168.1\|66242_66647_+	thermonuclease family protein	NA	NA	NA	NA
WP_143560112.1\|66765_67224_+	hypothetical protein	NA	NA	NA	NA
WP_082635351.1\|67210_67888_+	hypothetical protein	NA	NA	NA	NA
WP_062069184.1\|68057_68948_+	hypothetical protein	NA	NA	NA	NA
WP_143560113.1\|69028_69298_+	hypothetical protein	NA	NA	NA	NA
WP_062069190.1\|69290_69491_+	hypothetical protein	NA	NA	NA	NA
WP_062069202.1\|69595_69934_+	hypothetical protein	NA	NA	NA	NA
WP_062069205.1\|69930_70647_+	hypothetical protein	NA	NA	NA	NA
WP_062069208.1\|70745_71120_-	hypothetical protein	NA	NA	NA	NA
WP_062069211.1\|71116_71788_-	ParA family protein	A0A0A8IL09	Aurantimonas_phage	2.6e-34	36.8
WP_062069214.1\|72184_72751_-	hypothetical protein	NA	NA	NA	NA
WP_156415398.1\|72960_73518_-	2'-5' RNA ligase family protein	NA	NA	NA	NA
WP_062069223.1\|73848_74334_+	hypothetical protein	NA	NA	NA	NA
WP_062069225.1\|74466_75402_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_082635357.1\|75612_76587_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_062069227.1\|76767_77217_-	hypothetical protein	NA	NA	NA	NA
WP_021224283.1\|77672_80582_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_006961816.1\|80723_81590_+	recombinase family protein	E5FFF9	Burkholderia_phage	4.8e-25	40.0
WP_156415400.1\|81556_82528_-\|integrase	integrase	NA	NA	NA	NA
WP_062069231.1\|82700_83906_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_048575061.1\|84160_85423_-	hypothetical protein	NA	NA	NA	NA
WP_030540651.1\|85419_86256_-	AAA family ATPase	NA	NA	NA	NA
WP_037471261.1\|86252_87713_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_007686501.1\|89011_89410_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_013041559.1\|89409_90093_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_062069233.1\|90137_90509_-	hypothetical protein	NA	NA	NA	NA
WP_015449220.1\|90552_91569_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_062069236.1\|91613_92816_-	AAA family ATPase	A0A1I9KF58	Aeromonas_phage	6.6e-41	31.3
WP_062069239.1\|93010_94099_-	replication initiation protein	NA	NA	NA	NA
WP_062069241.1\|94764_95091_+	single-stranded DNA-binding protein	K7ZMK1	Xanthomonas_citri_phage	3.2e-06	31.4
WP_015449216.1\|95153_96020_+	hypothetical protein	A0A0H5AWB1	Pseudomonas_phage	1.8e-08	32.3
WP_082635358.1\|96209_100286_+	methylase	A0A076FMQ0	Aureococcus_anophage	1.2e-25	26.0
WP_062069245.1\|100397_102410_+	chromosome partitioning protein ParB	G8DH78	Emiliania_huxleyi_virus	5.9e-34	27.6
103124:103153	attL	NA	NA	NA	NA
WP_062061472.1\|103242_104454_+\|integrase	tyrosine-type recombinase/integrase	A0A1L4BKH1	Thermus_phage	3.2e-11	33.3
WP_062061477.1\|104450_105392_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	3.4e-08	31.0
WP_062061480.1\|105388_106381_+\|integrase	site-specific integrase	A0A1P8DJ76	Virus_Rctr85	2.0e-11	31.7
WP_062069391.1\|106572_106797_+	hypothetical protein	NA	NA	NA	NA
106437:106466	attR	NA	NA	NA	NA
WP_044663240.1\|106768_107188_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_062069247.1\|107200_107737_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	2.6e-21	36.9
WP_056383881.1\|107733_108174_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.2e-48	68.6
WP_056383883.1\|108170_109238_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_056383886.1\|109234_109666_+	GNAT family N-acetyltransferase	A0A2H4J155	uncultured_Caudovirales_phage	1.0e-20	44.7
WP_056383962.1\|109665_110406_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.7e-74	71.6
WP_056383887.1\|110753_111695_+	DUF2493 domain-containing protein	A0A0D4DBJ6	Vibrio_phage	4.6e-05	35.3
WP_056383889.1\|111808_112477_+	hypothetical protein	NA	NA	NA	NA
WP_013849894.1\|112884_113292_+	single-stranded DNA-binding protein	A0A0M3LP44	Mannheimia_phage	1.5e-13	35.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP013267

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5748 : 41885

Lactococcus_phage(13.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048578474.1\|5748_8664_-	Ti-type conjugative transfer relaxase TraA	V5UQN3	Mycobacterium_phage	1.3e-10	24.2
WP_048575094.1\|8806_9235_+	hypothetical protein	NA	NA	NA	NA
WP_053085604.1\|9250_10150_-	cell wall hydrolase	E3PZA6	Roseovarius_sp._217_phage	8.8e-06	35.3
WP_048575093.1\|10159_10690_-	S26 family signal peptidase	NA	NA	NA	NA
WP_048575092.1\|10686_11016_-	hypothetical protein	NA	NA	NA	NA
WP_048575091.1\|11012_11693_-	AAA family ATPase	A0A0A8IL09	Aurantimonas_phage	1.4e-35	43.8
WP_048575090.1\|12093_12351_+	antitoxin	NA	NA	NA	NA
WP_048575089.1\|12347_12674_+	pemk protein	NA	NA	NA	NA
WP_030091807.1\|12737_13043_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.5e-13	48.8
WP_030091808.1\|13035_13344_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	2.6e-26	61.3
WP_140404623.1\|13453_14161_-\|protease	SprT family zinc-dependent metalloprotease	A0A1V0DYF5	Dinoroseobacter_phage	1.4e-22	39.1
WP_140404624.1\|14103_14937_-	hypothetical protein	A0A2H4PB09	Aphanizomenon_phage	1.0e-08	38.4
WP_062069476.1\|15594_15885_+	hypothetical protein	NA	NA	NA	NA
WP_048575085.1\|15970_16297_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_048575084.1\|16585_17188_-	recombinase family protein	A0A0C4UR34	Shigella_phage	5.5e-36	45.4
WP_156415414.1\|17626_17821_-	hypothetical protein	NA	NA	NA	NA
WP_156028722.1\|17910_18661_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.9e-28	50.0
WP_156415416.1\|18658_18814_-	hypothetical protein	NA	NA	NA	NA
WP_048575081.1\|18988_19339_+	hypothetical protein	NA	NA	NA	NA
WP_048575080.1\|19610_20597_-	hypothetical protein	S5M810	Pseudoalteromonas_phage	2.1e-16	39.4
WP_148564659.1\|20593_21184_-	thermonuclease family protein	NA	NA	NA	NA
WP_082165952.1\|21180_21519_-	hypothetical protein	NA	NA	NA	NA
WP_048575079.1\|21546_21813_-	hypothetical protein	NA	NA	NA	NA
WP_048575078.1\|21809_22001_-	hypothetical protein	NA	NA	NA	NA
WP_048575077.1\|22096_22591_-	hypothetical protein	A0A1X9SGN6	Bradyrhizobium_phage	9.7e-23	45.3
WP_082166272.1\|22587_23118_-	hypothetical protein	NA	NA	NA	NA
WP_082165951.1\|23114_23303_-	hypothetical protein	NA	NA	NA	NA
WP_048575075.1\|23299_23491_-	hypothetical protein	NA	NA	NA	NA
WP_048575116.1\|23733_23973_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_053085603.1\|24022_24820_-	DUF3768 domain-containing protein	NA	NA	NA	NA
WP_048575074.1\|24822_25614_-	hypothetical protein	NA	NA	NA	NA
WP_048575073.1\|25618_25810_-	hypothetical protein	NA	NA	NA	NA
WP_011950768.1\|26245_27739_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_007686288.1\|27735_28503_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.9e-42	39.2
WP_062069482.1\|28774_29149_+	EthD domain-containing protein	NA	NA	NA	NA
WP_062069485.1\|29490_31041_-	deoxyribodipyrimidine photolyase	E3T4R9	Cafeteria_roenbergensis_virus	2.0e-53	27.3
WP_082635370.1\|31243_31633_+	PRC-barrel domain containing protein	NA	NA	NA	NA
WP_082635369.1\|31632_32337_+	hypothetical protein	NA	NA	NA	NA
WP_011950768.1\|32393_33887_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_007686288.1\|33883_34651_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.9e-42	39.2
WP_048575072.1\|34959_35787_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_048575071.1\|35977_36256_-	hypothetical protein	NA	NA	NA	NA
WP_053085602.1\|36330_36573_-	DUF2274 domain-containing protein	NA	NA	NA	NA
WP_048575070.1\|36576_36903_-	hypothetical protein	NA	NA	NA	NA
WP_062069494.1\|36962_38063_-	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_062069497.1\|38228_41102_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_001389365.1\|41120_41885_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage