CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013334	Fusobacterium hwasookii ChDC F300 chromosome, complete genome	9 crisprs	csa3,DEDDh,cas14j,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,WYL,DinG,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,RT,cas14k	5	10	4	5
NZ_CP013335	Fusobacterium hwasookii ChDC F300 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013334_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013334_1

119524-119603

Orphan

Consensus_repeat	Method
ACCTTCTAATTTAGAAACTTTTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP013334_1

>merge|NZ_CP013334|1|119524-119603|CRISPRCasFinder
ACCTTCTAATTTAGAAACTTTTTCTTCAATTTTAGTTGCACAGTGAGCACAATCTAAACCTTCTAATTTAAAAACTTTTT

>NZ_CP013334|1|1|119524-119603|CRISPRCasFinder
ACCTTCTAATTTAGAAACTTTTT	CTTCAATTTTAGTTGCACAGTGAGCACAATCTAA
ACCTTCTAATTTAAAAACTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013334.1\|WP_029492060.1\|125703_126939_+\|murein-hydrolase-activator-EnvC	unknown	unknown	gnl\|CDD\|227278
NZ_CP013334.1\|WP_032889980.1\|106482_106731_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_058118814.1\|105480_106011_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029492063.1\|123473_124157_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|379040
NZ_CP013334.1\|WP_029492057.1\|129416_130175_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|227308
NZ_CP013334.1\|WP_029492059.1\|126956_127760_+\|NAD(+)/NADH-kinase	unknown	unknown	gnl\|CDD\|223139
NZ_CP013334.1\|WP_029492064.1\|120925_123157_-\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
NZ_CP013334.1\|WP_029492058.1\|127738_129415_+\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP013334.1\|WP_029492066.1\|117334_119179_-\|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319847
NZ_CP013334.1\|WP_032881823.1\|115012_116296_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl\|CDD\|225428
NZ_CP013334.1\|WP_029492067.1\|116318_117098_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270315
NZ_CP013334.1\|WP_029492061.1\|124799_125729_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225088
NZ_CP013334.1\|WP_005917819.1\|120136_120868_-\|pyruvate-formate-lyase-activating-protein	unknown	unknown	gnl\|CDD\|131546
NZ_CP013334.1\|WP_005917816.1\|119608_119989_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP013334.1\|WP_058118815.1\|106040_106466_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_058118816.1\|106700_107252_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|225439
NZ_CP013334.1\|WP_058118817.1\|107262_113253_+\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|380182
NZ_CP013334.1\|WP_029490913.1\|105071_105467_+\|adhesion-protein-FadA	unknown	unknown	gnl\|CDD\|370466
NZ_CP013334.1\|WP_029492062.1\|124259_124649_+\|adhesion-protein-FadA	unknown	unknown	gnl\|CDD\|370466
NZ_CP013334.1\|WP_029492069.1\|113407_114919_+\|YfcC-family-protein	unknown	unknown	gnl\|CDD\|224207

Protein	Function_ID	Function_description	E-value
NZ_CP013334.1\|WP_029492060.1\|125703_126939_+\|murein-hydrolase-activator-EnvC	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	3.09847e-121
NZ_CP013334.1\|WP_029492057.1\|129416_130175_+\|site-specific-integrase	gnl\|CDD\|227308	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair].	9.75473e-13
NZ_CP013334.1\|WP_005917819.1\|120136_120868_-\|pyruvate-formate-lyase-activating-protein	gnl\|CDD\|131546	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. [Energy metabolism, Anaerobic, Protein fate, Protein modification and repair].	1.77914e-136
NZ_CP013334.1\|WP_029492063.1\|123473_124157_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|379040	pfam13145, Rotamase_2, PPIC-type PPIASE domain.	1.28242e-06
NZ_CP013334.1\|WP_029492059.1\|126956_127760_+\|NAD(+)/NADH-kinase	gnl\|CDD\|223139	COG0061, nadF, NAD kinase [Coenzyme metabolism].	1.33214e-82
NZ_CP013334.1\|WP_029492058.1\|127738_129415_+\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
NZ_CP013334.1\|WP_029492066.1\|117334_119179_-\|cadmium-translocating-P-type-ATPase	gnl\|CDD\|319847	cd07548, P-type_ATPase-Cd_Zn_Co_like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis CadA which appears to transport cadmium, zinc and cobalt but not copper out of the cell. Bacillus subtilis CadA/YvgW appears to transport cadmium, zinc and cobalt but not copper, out of the cell. Functions in metal ion resistance and cellular metal ion homeostasis. CadA/YvgW is also important for sporulation in B. subtilis, the significant specific expression of the cadA/yvgW gene during the late stage of sporulation, is controlled by forespore-specific sigma factor, sigma G, and mother cell-specific sigma factor, sigma E. This subfamily also includes Helicobacter pylori CadA an essential resistance pump with ion specificity towards Cd(2+), Zn(2+) and Co(2+), and Zn-transporting ATPase, ZiaA(N) in Synechocystis PCC 6803. Transcription of ziaA is induced by Zn under the control of the Zn responsive repressor ZiaR. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP013334.1\|WP_032881823.1\|115012_116296_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
NZ_CP013334.1\|WP_029492067.1\|116318_117098_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270315	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold. This group includes the lipoprotein Tp32, a periplasmic component of a methionine uptake transporter system, and its closely related homologs. The Tp32 has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus it belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	1.74644e-117
NZ_CP013334.1\|WP_029492061.1\|124799_125729_+\|ABC-transporter-permease	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	3.79261e-63
NZ_CP013334.1\|WP_029492062.1\|124259_124649_+\|adhesion-protein-FadA	gnl\|CDD\|370466	pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.	1.25346e-16
NZ_CP013334.1\|WP_005917816.1\|119608_119989_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.03966e-21
NZ_CP013334.1\|WP_029492069.1\|113407_114919_+\|YfcC-family-protein	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
NZ_CP013334.1\|WP_058118816.1\|106700_107252_+\|OmpA-family-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	7.98102e-42
NZ_CP013334.1\|WP_058118817.1\|107262_113253_+\|autotransporter-domain-containing-protein	gnl\|CDD\|380182	NF033175, fuso_auto_Nterm, autotransporter-associated N-terminal domain-containing protein. This domain typically is found in the genus Fusobacterium, in N-terminal regions of large proteins that are recognized as autotransporter proteins by C-terminal regions matching Pfam model PF03797. In paralogous families of such proteins, the N-terminal and C-terminal regions are fairly well-conserved, but the repetitive central region is poorly conserved in both length and sequence.	1.84765e-67
NZ_CP013334.1\|WP_029490913.1\|105071_105467_+\|adhesion-protein-FadA	gnl\|CDD\|370466	pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.	1.253e-10
NZ_CP013334.1\|WP_029492064.1\|120925_123157_-\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0

>NZ_CP013334.1|WP_029492066.1|117334_119179_-|cadmium-translocating-P-type-ATPase
MKKKKEVIIIISAVLFAIALFVRMTQNLQLILMLVVYILLGKDTVLKAVKNVEKGDFFDENFLMTVATLGAIMIGEYPEAVAVMLFYEVGELFQGYAINKSRKSIADMMDIKPEYANVIRDNKSIKVDPDEVQIDETIEIKPGERVPLDAIIIKGETTLDTSALTGESLPVEVREGATILSGCININSLILAKVTKEYFDSTVNKVLDLVENAAAKKSTSERLITRFAKIYTPIVISLAVLLAILPPIISGEYNFRLWIFRALSFLVVSCPCAFVISVPLSFFSGIGAASRAGILIKGGNYLEILSKVDTVVFDKTGTLTKGVFNVQKVVVIDKSIKEDEFISLVAMAESGSNHPISKSIQKYYNREINKNSINSIKEISGKGIEALINNMKILVGNEKLVNVPSDLIIDDIGTILYVEIDNKFTGYIVISDEIKKDASKAIKGLKDVGVKKSIMLTGDIEKVGKKVGEELGLDEIYTNLLPQDKVSKFEEIIENKKSKGNVAFVGDGINDAPVLARADVGIAMGAMGSDAAIEAADVVIMTDEPSKIVTAIKSSKKTMKIAMQNIALAFGVKAIALILSALGIADMWMAVFADTGVTILAVLNSFRALKIENN
>NZ_CP013334.1|WP_029492067.1|116318_117098_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKILLHCFTWLLISANIFAGTLKVGATPIPHAELLNYLKSDLKKEGVDLKIVEFTDFVTINEALIDGELDANYWQHLPHLTLIMQKEKKTDLVAVTKVHVETIGLYSTKIKSIKDLKVGAKIAIPSDSTNEGRALILLHNNGIIKLKDPKNLLATPVDIVSNPKKLKFQELDAALLPRTLDSVDGAIITANYALQAGFVPSKDAILLEDKNSPYVNVLVTRKKNQNNEDIKKLAKALNSEKARKFINEKYNGAVVPAF
>NZ_CP013334.1|WP_032881823.1|115012_116296_-|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MIDKKNLEIETQLVQSLEEFEEGESRTVPLVQSTTFNYTNPDTLAELFDLKKLGYFYSRLSNPTVAAFENKMAILEKGVGALAFASGQAANTAAILTICKAGDHIVAVSTLYGGTITLLASTLKNYGIETTFVNPEASEEEFKAAFRENTKILFGETLGNPEMNTLNFEKIVKIAKEKDVPTIIDNTLATPYLCNPISHGINIVVHSATKYIDGQGSVLGGVIVDGGNYNWDNGKFPMLVEPDVSYHNMSYYKTFGNLAYIIKARANILRDMGAALSPFNAFILLRGLETLHLRMERHSENALALATALEKNPNISWVKYSKLPSHYAYKNAEKYLPKGGSGVILVGVKGGREGAEKFIKGLEWIRAVVHVGDSRTCLLHPASTTHRQLSEEDLIKCGVLPEAVRINVGIENINDIIADIEQALAKL
>NZ_CP013334.1|WP_029492069.1|113407_114919_+|YfcC-family-protein
MKRKNFEFPTAYTVLFLILILVTVLTHVIPAGKYNRLSYEESTNEFVVETYGNGNINLEATQKNLDKLEIKIDVNKFIDGTIKKPMAIPNTYVKLDGKAQGFKELIIAPISGIAESIDIIIFVLILGGIVGIVNKTGTFNIAMKAISQKTKGKEFSLVIISFIFFAAGGTIFGFWEETIPFYSILMPLFLINNFDPLVPMATIFLGSAVGCMFSTVNPFSTIIASNAAGISFNEGLKFRFVALIVFSIISLLYINRYIKKVKKDSDNSLVIEEQEEIKEKFLKDYSQETNIKFDWRKKIILFLFIFQFIIMIWGVSSLGWWFQEAAAMFFGIAIIIMLLSGLSEKEAVNGFISGASEVVGVTLIIGLARAINIIMENGMISDTLLFYSSNVVAEMGKGLFSIAMLLIFAFLGIFIPSTSGLAVLSMPILAPLADTVGLSRAVVVDAFSWGQGVILFITPTGLIFVVLQIVGIPYNKWLKFVMPLMVIIIILIISILYVRSVFF
>NZ_CP013334.1|WP_058118817.1|107262_113253_+|autotransporter-domain-containing-protein
MGNNNLYTIENTLRSMAKRYKSVKYSLGLAILFLMMGVSAFSEEVVAQQEVMTTEQIASSKENLKDSIGNLKSKIDTARTENEKGLAGLRLELIQLMEQGNQVVKSPWMSWQFGANYMYSKWNGTYKGKGDKAEKYPFEGVFERETGANEFNRYVAENSAMYSYLSKSNNGASASSSLRGNTNNYGLASNTTVPEEPVSFAISASIRPRIVTKGAINVPAPAALSPTLPRAIDFKPVTPKIVVPSPDPITVTIPSPPPTGNWDATWIKQNGDVGVFHQVNIDGGKIDIDINNTSFDVSVVNSKLVGETGAAHGKTYYTTLDNPTATTTVTGNTTGPAVPLTFSIKNNNSSGTYAVMKLVGGQEINLDNVEINFVGTGPTNYNRWLFHTDGHNRFGESTWVLNEGTKVTINGSNLVMYTAQYHNEVQAGQAPNVGFVNKGTITTTGSKHYLWMTMADGGNKKRSMYFDNQGTIKMGGAGDTFALLNAENEPDGGFSFLNSGTLEFSGESQKGLTFGREYPTAEIILSEPIKITGKKSAGIYFNKYIDLIGGKTRLASNTNNIVTALPTTTRESVLKMDLSGSQNTGLYFNSNSTDQFGVNNYALNSTDGTGNVLAYIQDGKVSLAAPGTGKANAINITGGTGNVGIYTVASGDDLATGAKITVNNSDSSIGLFAKSSGAVTNTGEISASGKSIKAMIAQAATITSTGKVTVDGTALSDTDGAVGLASMDGGNLTQNHADTSITVDGSASIGVYADGKVGVPAAVATALNVTGGTITAKGGSFNTYAANNGTITLNGVTLNTEQKSLAFYTTDGGKVDFGTGATTTANIKGGTDSNTRGTAFLYKGAGATYTPFTPNDVKIWAAANFAHLDKLKLNMEQGSRLFIAQNVAMDLSGTGPGGIAGALPGVTITGSSDYKTFMLYLSKLKLDQNINLEDPTDAYNKLEVSNSSIENNNSNTITGTSDGRVAIAQENDTTIVRDKVKLINSGDINLSGANSTGIYGKFAEITNETTGTINVGATSAAIYGTTDSKLENKGTMNLGANSVGIFSKGDTAAGYVIGGNTYKGSVANLGTIASTGKAIGITYNGTGSGVTDTRITNDTTGKINLAGEGSVGIYGLGSDYQILNKGEITLGNSSNISTSPNVGVYTAVETVAIKNDATGKIAVGNNSVGAYGYDIENTGNITTGDNGVAIYSKRKAAGPSTVTSTGNITVGASDATALFLENGGNLNLNAGTLNIGDGSYGIVAIGNDSFTYNNNAAVNVNLGNGATYFYSNNPTTNFTNNVALNTTNKRVYGISTVGTVTNAANFTLGDESVGVLYNGTGVAKNTANITVGNSDVENENYAIGMATKTGTIENDSTGTITVGSSGIGLFADGANSKAINRGTINLNGDKAMGMYLDNGAQGINYGTIIANGTAKEAVGVAVQHRATFINETTGIVDINSEDGYAFFKATGGTIVNKGTMRLAGGAKETYDPTSKPTSKATGSVKINAPSGATPATTTITVAGVPQTIEQVIINTPQGKTGPAPTSLGIYVDTLGGTNPISGNLGLITTEADLILGNEVAKTTTSKNIIISGSVLDPYNAMMAANSGVTWNAYAGALTWTATPLYKDGVLGSVVLAKLPYTEFAGNTATPVEVTDTYNFLDGLEQRYGVDPVGSREKQLFDKLNEIGKNEKVLFFQATDEMMGHQYANTQQRINATGNVLDKEFDYLRGEWQTASKDSNKIKTFGTNGEYKTDTAGVINYKNNAYGVAYVHENEDIKLGKGIGWYAGIVHNTFRFKDIGRSREHMLQGKVGLLKSVPFDDNNSLNWTISGDIFVGRNRMHRKFLVVDEIFNAKSRYYTYGVGVKNEIGKEFRLSEGFSLRPYAALKLEYGRVGKIREKSGEVKLEVKQNQYFSVKPEIGAELAFKHYFGRKTLKVGLGAAYENELGRVANGKNKARVADTTADWFNIRSEKEDRRGNVKFDLNLGLDNQRFGVTGNVGYDTKGQNVRGGLGLRVIF
>NZ_CP013334.1|WP_058118816.1|106700_107252_+|OmpA-family-protein
MGKRKNSTTIIMTVLFLIVFSLPSLAALTTTQIRENSIRINALELKNLDILNSEAPKEMTIVLDERSLNFDFDKSNVKPEYYDLLTNIKEFVEQNNYEITIVGHTDSVGSNAYNFKLSRRRAESVKAKLLEFGLTEDRIVGIEAMGEEQPIATNETKEGRAQNRRVEFKLVQRENISATGENK
>NZ_CP013334.1|WP_032889980.1|106482_106731_+|hypothetical-protein
MKKLAILALGVLSLVACTDQKVVNYNTARLDVIEDYLRNHKYVKPSENFDKLVEEGKIEYAEEYVSLEKEAKQWEREKTQQQ
>NZ_CP013334.1|WP_058118815.1|106040_106466_+|hypothetical-protein
MKNRILFGTMLALLLVGSVSFADDDADKKRLLEEYDKMQAEKAKEAERLAKEQPQEAAPAEATEVVGENGEVVVTEGEEVAQAPKKAEKDMTESERMDVEVQRIKKRMLEINDKIENYNKTNEMIDNLEKNVEELERKVNY
>NZ_CP013334.1|WP_058118814.1|105480_106011_+|hypothetical-protein
MKKFLKVALFLCALSSLAYAEETTPVVAEANTTMSAEEQKDAMDILERMRAKIEKEEAEKAKLAAEARELGMSPSEVASMDNVEEMIEAKRTEEAKPKTEAEKLELTRKKALNKLDFYERVVRSVAREEAEIAGYYEIMGEEKARPSIMDEQNQAPAETTTEASTQEATEVEAEVK
>NZ_CP013334.1|WP_029490913.1|105071_105467_+|adhesion-protein-FadA
MKAKILLCSMLILGSLSYAAETDSVAQEVMSEVKNIEAEYQALIQKEMERKEEFKQEKETLEKEVQELKERQLGREELYAKLKEDSKVRWHRDEYKKLLKRFDEYYNKLEQKIADKEQQIVELTKLLEVLN
>NZ_CP013334.1|WP_005917816.1|119608_119989_-|winged-helix-turn-helix-transcriptional-regulator
MKTTKTVNSCDCDSVNQELVDKVKKKFPDDELLGDLSDFFKVIGDGTRIRILWALDVSEMCVCDIANVLNMTKSAVSHQLRALREADLVKFRRSGKEVLYSLSDNHVKEIFEQGLIHIQEDKKGDE
>NZ_CP013334.1|WP_005917819.1|120136_120868_-|pyruvate-formate-lyase-activating-protein
MQGYINSFESFGTKDGPGIRFVVFMQGCPLRCLYCHNVDTWELKDKNYIYTPEEILAELNKVRAFLTGGITASGGEPLFQASFILELFKLCKENGIHTALDTSGYIFNEQAKKVLEYTDLVLLDIKHIDKEMYKKLTSVDLEPTLNFIKYLQEINKPVWIRYVLVPGYTDDIKDLNDWAKFVSQFDVVKRVDILPFHQMAIYKWEKTNREYKLKDTLTPNKEQIQKAEEIFRKYNLPLYKERS
>NZ_CP013334.1|WP_029492064.1|120925_123157_-|formate-C-acetyltransferase
MEAWRGFKSGEWQDSINVSNFIKHNYTEYLGDESFLEGPTDNTKKLWDILSGMLKIEREKGIYDAETKIPSKIDAYGAGYISKDLETIVGLQTDAPLKRAIFPNGGLRMVENSLEAFGYTLDPTTKEIYEKYRKSHNAGVFSAYTPAIKAARHTGIITGLPDAYGRGRIIGDYRRVALYGVDRLIAERKREFDAYDPEEMTEDVIRDREEMFEQLEALKALKRMAAAYGFDIGRPAETAQEAIQWTYFAYLGAIKDQNGAAMSLGKTAGFLDVYIERDLKEGRITERDAQEFIDHFIMKLRIVRFLRTPEYDQLFSGDPVWVTESIGGMNNEGRSWVTKNAFRYLNTLYNLGTAPEPNLTILWSERLPENWKKFCSKVSIDTSSLQYENDDIMRPQFGEDYGIACCVSPMAIGKQMQFFGARANLPKALLYAINGGKDELKKEQVTPAGQFEKITSDYLEFDEVWEKYDKMLTWLASTYVKALNIIHFMHDKYSYEALEMALHSLDIKRTEACGIAGLSIVADSLAAIKYGKVRVIRDEDGDAVDYVVEQPYVPFGNNDDRTDELAIKVVRTFMNKIRSHKMYRNAEPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDTKGAVASLASVAKLPFEDANDGISYTFAITPETLGKTDDEKKNNLVGLLDGYFKQTGHHLNVNVFGRELLEDAMEHPENYPQLTIRVSGYAVNFIKLTKEQQLDVISRTISNKM
>NZ_CP013334.1|WP_029492063.1|123473_124157_+|peptidyl-prolyl-cis-trans-isomerase
MEEDKILHAILLKKAKEAQYTNYEIEQINLQSESLFIRYYLEREAAKIVENTNIEEEVLKKIYEENQTLYKYPEKVKIDTIFVKDLEKAEEILKEVTLENFNELKEKNDEKGKDVKESLDEFLFVTEIHPTIAQEVLQESEKNVIIKKAIPVQEGFHIIYLKDIEESRQAIFDEAKEAILADVKRNIFGQVYNQLIQDIANETVKIEEPTKNEKSKESKSTKVGAKG
>NZ_CP013334.1|WP_029492062.1|124259_124649_+|adhesion-protein-FadA
MKKFLLLAVLAISASAFAATDAASLVGELQALDAEYQNLANQEEARFNEEKAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQDLASKYEEALKKLEAEMEQQKAIISDFEKIQALRAGN
>NZ_CP013334.1|WP_029492061.1|124799_125729_+|ABC-transporter-permease
MYKLFGYGLKGIPYINRLKRRVFYAVVITVVSLNVFISFSLNLRSLTNEKIFNSFIVVDLQNNLNQDKKNEIEKYILGIEGVRSVRFMDKFESFKNLQNELNISIPESSNPLTDSLVISVKDPTLLGKIQETIETREEVKEVYKDESYLKQSKEQGFITSIAQIGSGVFSFFIAVITIIIFNFGVAIEFLNNANTGLDYAENIRKSKIRNLLSFTMSTVIGTLIFFNIYVLFRRYVSNAKFDSSMLSLKEIVLWHLGAIAVLNLLVWLIPANIGRIEYAEEDDEDELDDEFYEDDEDGDSDDEFEDDED
>NZ_CP013334.1|WP_029492060.1|125703_126939_+|murein-hydrolase-activator-EnvC
MSSKMMKTKIFLTFFLLSASIYPASNSVKDMNKRLKNIDKEIEKKNTRIKAIDTETSKLEKMIKELEEEIKKLEHERKEIEDEITVVKKNIDYSKKNLEISEVEHGRKESEFVAKIIAWDKYSKIHGKDIDEKVLLTKNYREMLHGDLQRMGYIEKVTGNIKEVKEKIEAEKRKLDRLEAELRENLRKSDVKKEEQKKLKEQLQVEKKGHQSSIEKLKKEKQRISREIERIIRENARRAAEKAAREKAAREAAKNKGKSTGKGKGSDGTKVTTTTVDMPKISNPEAYKRIGKTIKPLNGQVVVYFGQKKAGVVESNGIEIKGKLGNPVVASKAGTVIYADAFQGLGKVVMIDYGGGIIGVYGNLLAIKVNINSKVSSGQTIGVLGLSSDKEPNLYYELRANLRPIDPMPTF
>NZ_CP013334.1|WP_029492059.1|126956_127760_+|NAD(+)/NADH-kinase
MIKLSIIYNTDKEDAIKIYKELLKYLKSKKEFEVLDDKNISQAEYIVVIGGDGTLLRGFKKIKNKEVRIIAINSGTLGYLTEIRKDGYKEIFENILKGKVNIEERYFFTVKIGKKKYNALNEVFLTKDNIKRNIVSSEIYVDDKFLGKFKGDGVIISTPTGSTAYSLSAGGPVVTPELKLFLITPIAPHNLNTRPIILSGDVKIVLTLSGPSEFGIVNVDGHTHNKINLEDEVEISYSKESLKIVLPDNRNYYNVLREKLKWGENLC
>NZ_CP013334.1|WP_029492058.1|127738_129415_+|DNA-repair-protein-RecN
MGRKLMLRELKIENLAIIDELDIEFDKGFIVLTGETGAGKSIILSGINLLIGEKASVDMIRDGEENLVAQGVFDVDEEQKKALEAMGIDTDGDEIIIRRSYSRSGKARAFVNNVRISLTDLKEIASTLVDIVGQHSHQMLLNKNNHIKLLDSFLNKDEKDLKENLINLLSQYREIDTKIENIERERKETLEKKEFYEYQLEEIEKLKLKDGEDELLEAEYKRVFNAEKIREKVYESLEYLKDDEDSALSLITNSIRNIEYLGKYDERYIELAKRMENAYYELEDCANEIENISKGIDVTESDLDKIAGRMNTLKRIKEKYKRSLPELIAYREDLKEKLSDIDSGDFKTKELKKELNKIKTEYDKIAEKLTISRKEIAVKIENELLNELKFLNMEDAKLKVQINKLERMTSEGYDDVEFFISTNVGQDLKPLNKIASGGEVSRVMLALKVIFSKVDNIPILIFDEIDTGIGGETVRKIALKLKEIGDNTQIISITHSPVIASKASQQFYIEKYVENSKTISRVKKLSAEERIKEIGRMLVGEKINNEVLEIANKMLNEV
>NZ_CP013334.1|WP_029492057.1|129416_130175_+|site-specific-integrase
MNILEKYIENLVVKKNLLQTTVDAYKLDINEYLEFLTKKDIDILDTNEKIFNEYFSDVEKNYKKATFSRKYSTIRGLYKFLLKNRYIEKIFEYKLSVNKSDNEVTTKKNNIIFKQKEYEEFINSLSDNFNEMRLKLISKMIVEYKINLVNIFEIQIKDLLKYDFQKIIIVRNNKIISYDINKIMEEDLKNYYKKYAFEKRFLFGAYGKSTFISDLKRYNLDFKTLKNCMQEDEKDLIENIRKMYFEIGIGDN

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Crispr_ID: NZ_CP013334_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013334_2

583224-585597

Unclear

Consensus_repeat	Method
ATTTATGTATTTCTATATTAGAATTTAAAT	PILER-CR
ATTTATGTATTTCTATATTAGAATTTAAAT	CRISPRCasFinder
ATTTATGTATTTCTATATTAGAATTTAAAT	CRT

35 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NZ_CP013334_2

>merge|NZ_CP013334|2|583224-585597|PILER-CR,CRISPRCasFinder,CRT
ATTTATGTATTTCTATATTAGAATTTAAATGCTTTTGTATATTCTAAAATTATTTCTTCAGTTGGAAATTTATGTATTTCTATATTAGAATTTAAATCTGTCTATGTTTAATATGCAAATATCGCCAATTTTATATTTATGTATTTCTATATTAGAATTTAAATATTTTTCTTATTTCTAGCATCATGTCCTCCTGTTTTCATTTATGTATTTCTATATTAGAATTTAAATGGGTTTTCTTCTTTTTCCTGAAAGTTTTGAAACAGTTCATTTATGTATTTCTATATTAGAATTTAAATGTGGTATTTAATAAATATTAAAAATATAGATAAAAAAGATTTATGTATTTCTATATTAGAATTTAAATCAACTAAAAAATTACTAACTCTAACAGTTTCTTCTATTTATGTATTTCTATATTAGAATTTAAATGTGCCTTTCATTCCAGGGGTTAAAGGTTAAAATAATATTTATGTATTTCTATATTAGAATTTAAATTGTTCTAAAACTTTATCTATAGCTTTTTCAAAATTAATTTATGTATTTCTATATTAGAATTTAAATTTCTATCCCATTTTTTAGTAGGTTCTTTTACTATTAAATTTATGTATTTCTATATTAGAATTTAAATTGGGGAATTGGTATAGGTTTAGAAAACTTAGATTTAATTTATGTATTTCTATATTAGAATTTAAATTTAGCAAGTTTTAAATGTATTTCTTTTCTTTTCTTCATTTATGTATTTCTATATTAGAATTTAAATGCTACCATAAAAGCAATGTCTTTATCTCTACATCTCATTTATGTATTTCTATATTAGAATTTAAATATAGTATTTGATGGTGCAGTAGGAAGCGGACAGTTAGAATTTATGTATTTCTATATTAGAATTTAAATACACCAGGAAACAAAATATAGAAACCATATCTTTTTGTATTTATGTATTTCTATATTAGAATTTAAATGGTTGACTTGTGTATAATTCCAATATTATTCCGTTTTATTTATGTATTTCTATATTAGAATTTAAATAATAAATCTAAAACATTCCAATTTTCTTTGCTTGAAATTTATGTATTTCTATATTAGAATTTAAATTGTCTAGGTGGAAGATTTAAAATAAGAACTTCATCTATTTATGTATTTCTATATTAGAATTTAAATTTATTAGATGTAAATTTACAAGATACAACACAAAAATTTATGTATTTCTATATTAGAATTTAAATATTTTTCTGAAAATGGATGATACTTAATTTTATTTCTAATTTATGTATTTCTATATTAGAATTTAAATTCAAATTTAATTGTTAGATTTGGTGGTGGAGTTTCAAATTTATGTATTTCTATATTAGAATTTAAATATCTCCTAACAGGTCTAATCTGTAATCTCTAGCATATATTTATGTATTTCTATATTAGAATTTAAATAGTCTATATTTAAAAGATGGAAATAATTTATTATTGGATTTATGTATTTCTATATTAGAATTTAAATAGTGCTATCAAAAGTAGTTTTTGAGTTTACTCCATAATATTTATGTATTTCTATATTAGAATTTAAATTTGTCAACTATTGCTTTTACAGCTGTAGTCAATAAATTTATGTATTTCTATATTAGAATTTAAATAATGAAACTCTATATTTTAGTGCTTCTTATAGAAATAATTTATGTATTTCTATATTAGAATTTAAATATTACTTGGATTATAGCTGGAGTTGCTTTAGTTATTATTTATGTATTTCTATATTAGAATTTAAATCACAAATCTATAAACTTCTAATTTCTCTGAGTTCTGTATATTTATGTATTTCTATATTAGAATTTAAATTAAAATCAAATTTTAATTATATAATTTCTCTCTTTTATTTATGTATTTCTATATTAGAATTTAAATATTACATCAGTTTCTTTTAATTTGCTAACATCTAAGAAAATTTATGTATTTCTATATTAGAATTTAAATAATAATTTTACAGTGTATTTTGAAGGTAGAAGGATAAGATTTATGTATTTCTATATTAGAATTTAAATATTCTGCTCTTCTGCTGTTCTAACTCCCGCAGTTATCATTTATGTATTTCTATATTAGAATTTAAATAACATAGCAACAGCTGCATCATCATTAATCAATGATTCAATTTATGTATTTCTATATTAGAATTTAAATTTATTTAAACTTGCAAAAAGTTCAACCATTCGTATTTATTTATGTATTTCTATATTAGAATTTAAATTAGTGACAGAAATAACTTGACCTGATAGCTGTAGATTTCATTTATGTATTTCTATATTAGAATTTAAATTTAGATTTAAGAATAGAGAGTGACCAGGATTTACAAATTTATGTATTTCTATATTAGAATTTAAAA

>NZ_CP013334|2|1|583224-585597|PILER-CR
ATTTATGTATTTCTATATTAGAATTTAAAT	GCTTTTGTATATTCTAAAATTATTTCTTCAGTTGGAA
ATTTATGTATTTCTATATTAGAATTTAAAT	CTGTCTATGTTTAATATGCAAATATCGCCAATTTTAT
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTTTTCTTATTTCTAGCATCATGTCCTCCTGTTTTC
ATTTATGTATTTCTATATTAGAATTTAAAT	GGGTTTTCTTCTTTTTCCTGAAAGTTTTGAAACAGTTC
ATTTATGTATTTCTATATTAGAATTTAAAT	GTGGTATTTAATAAATATTAAAAATATAGATAAAAAAG
ATTTATGTATTTCTATATTAGAATTTAAAT	CAACTAAAAAATTACTAACTCTAACAGTTTCTTCT
ATTTATGTATTTCTATATTAGAATTTAAAT	GTGCCTTTCATTCCAGGGGTTAAAGGTTAAAATAAT
ATTTATGTATTTCTATATTAGAATTTAAAT	TGTTCTAAAACTTTATCTATAGCTTTTTCAAAATTA
ATTTATGTATTTCTATATTAGAATTTAAAT	TTCTATCCCATTTTTTAGTAGGTTCTTTTACTATTAA
ATTTATGTATTTCTATATTAGAATTTAAAT	TGGGGAATTGGTATAGGTTTAGAAAACTTAGATTTA
ATTTATGTATTTCTATATTAGAATTTAAAT	TTAGCAAGTTTTAAATGTATTTCTTTTCTTTTCTTC
ATTTATGTATTTCTATATTAGAATTTAAAT	GCTACCATAAAAGCAATGTCTTTATCTCTACATCTC
ATTTATGTATTTCTATATTAGAATTTAAAT	ATAGTATTTGATGGTGCAGTAGGAAGCGGACAGTTAGA
ATTTATGTATTTCTATATTAGAATTTAAAT	ACACCAGGAAACAAAATATAGAAACCATATCTTTTTGT
ATTTATGTATTTCTATATTAGAATTTAAAT	GGTTGACTTGTGTATAATTCCAATATTATTCCGTTTT
ATTTATGTATTTCTATATTAGAATTTAAAT	AATAAATCTAAAACATTCCAATTTTCTTTGCTTGAA
ATTTATGTATTTCTATATTAGAATTTAAAT	TGTCTAGGTGGAAGATTTAAAATAAGAACTTCATCT
ATTTATGTATTTCTATATTAGAATTTAAAT	TTATTAGATGTAAATTTACAAGATACAACACAAAA
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTTTTCTGAAAATGGATGATACTTAATTTTATTTCTA
ATTTATGTATTTCTATATTAGAATTTAAAT	TCAAATTTAATTGTTAGATTTGGTGGTGGAGTTTCAA
ATTTATGTATTTCTATATTAGAATTTAAAT	ATCTCCTAACAGGTCTAATCTGTAATCTCTAGCATAT
ATTTATGTATTTCTATATTAGAATTTAAAT	AGTCTATATTTAAAAGATGGAAATAATTTATTATTGG
ATTTATGTATTTCTATATTAGAATTTAAAT	AGTGCTATCAAAAGTAGTTTTTGAGTTTACTCCATAAT
ATTTATGTATTTCTATATTAGAATTTAAAT	TTGTCAACTATTGCTTTTACAGCTGTAGTCAATAA
ATTTATGTATTTCTATATTAGAATTTAAAT	AATGAAACTCTATATTTTAGTGCTTCTTATAGAAATA
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTACTTGGATTATAGCTGGAGTTGCTTTAGTTATT
ATTTATGTATTTCTATATTAGAATTTAAAT	CACAAATCTATAAACTTCTAATTTCTCTGAGTTCTGTAT
ATTTATGTATTTCTATATTAGAATTTAAAT	TAAAATCAAATTTTAATTATATAATTTCTCTCTTTT
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTACATCAGTTTCTTTTAATTTGCTAACATCTAAGAAA
ATTTATGTATTTCTATATTAGAATTTAAAT	AATAATTTTACAGTGTATTTTGAAGGTAGAAGGATAAG
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTCTGCTCTTCTGCTGTTCTAACTCCCGCAGTTATC
ATTTATGTATTTCTATATTAGAATTTAAAT	AACATAGCAACAGCTGCATCATCATTAATCAATGATTCA
ATTTATGTATTTCTATATTAGAATTTAAAT	TTATTTAAACTTGCAAAAAGTTCAACCATTCGTATTT
ATTTATGTATTTCTATATTAGAATTTAAAT	TAGTGACAGAAATAACTTGACCTGATAGCTGTAGATTTC
ATTTATGTATTTCTATATTAGAATTTAAAT	TTAGATTTAAGAATAGAGAGTGACCAGGATTTACAA
ATTTATGTATTTCTATATTAGAATTTAAAA

>NZ_CP013334|2|2|583224-585597|CRISPRCasFinder
ATTTATGTATTTCTATATTAGAATTTAAAT	GCTTTTGTATATTCTAAAATTATTTCTTCAGTTGGAA
ATTTATGTATTTCTATATTAGAATTTAAAT	CTGTCTATGTTTAATATGCAAATATCGCCAATTTTAT
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTTTTCTTATTTCTAGCATCATGTCCTCCTGTTTTC
ATTTATGTATTTCTATATTAGAATTTAAAT	GGGTTTTCTTCTTTTTCCTGAAAGTTTTGAAACAGTTC
ATTTATGTATTTCTATATTAGAATTTAAAT	GTGGTATTTAATAAATATTAAAAATATAGATAAAAAAG
ATTTATGTATTTCTATATTAGAATTTAAAT	CAACTAAAAAATTACTAACTCTAACAGTTTCTTCT
ATTTATGTATTTCTATATTAGAATTTAAAT	GTGCCTTTCATTCCAGGGGTTAAAGGTTAAAATAAT
ATTTATGTATTTCTATATTAGAATTTAAAT	TGTTCTAAAACTTTATCTATAGCTTTTTCAAAATTA
ATTTATGTATTTCTATATTAGAATTTAAAT	TTCTATCCCATTTTTTAGTAGGTTCTTTTACTATTAA
ATTTATGTATTTCTATATTAGAATTTAAAT	TGGGGAATTGGTATAGGTTTAGAAAACTTAGATTTA
ATTTATGTATTTCTATATTAGAATTTAAAT	TTAGCAAGTTTTAAATGTATTTCTTTTCTTTTCTTC
ATTTATGTATTTCTATATTAGAATTTAAAT	GCTACCATAAAAGCAATGTCTTTATCTCTACATCTC
ATTTATGTATTTCTATATTAGAATTTAAAT	ATAGTATTTGATGGTGCAGTAGGAAGCGGACAGTTAGA
ATTTATGTATTTCTATATTAGAATTTAAAT	ACACCAGGAAACAAAATATAGAAACCATATCTTTTTGT
ATTTATGTATTTCTATATTAGAATTTAAAT	GGTTGACTTGTGTATAATTCCAATATTATTCCGTTTT
ATTTATGTATTTCTATATTAGAATTTAAAT	AATAAATCTAAAACATTCCAATTTTCTTTGCTTGAA
ATTTATGTATTTCTATATTAGAATTTAAAT	TGTCTAGGTGGAAGATTTAAAATAAGAACTTCATCT
ATTTATGTATTTCTATATTAGAATTTAAAT	TTATTAGATGTAAATTTACAAGATACAACACAAAA
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTTTTCTGAAAATGGATGATACTTAATTTTATTTCTA
ATTTATGTATTTCTATATTAGAATTTAAAT	TCAAATTTAATTGTTAGATTTGGTGGTGGAGTTTCAA
ATTTATGTATTTCTATATTAGAATTTAAAT	ATCTCCTAACAGGTCTAATCTGTAATCTCTAGCATAT
ATTTATGTATTTCTATATTAGAATTTAAAT	AGTCTATATTTAAAAGATGGAAATAATTTATTATTGG
ATTTATGTATTTCTATATTAGAATTTAAAT	AGTGCTATCAAAAGTAGTTTTTGAGTTTACTCCATAAT
ATTTATGTATTTCTATATTAGAATTTAAAT	TTGTCAACTATTGCTTTTACAGCTGTAGTCAATAA
ATTTATGTATTTCTATATTAGAATTTAAAT	AATGAAACTCTATATTTTAGTGCTTCTTATAGAAATA
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTACTTGGATTATAGCTGGAGTTGCTTTAGTTATT
ATTTATGTATTTCTATATTAGAATTTAAAT	CACAAATCTATAAACTTCTAATTTCTCTGAGTTCTGTAT
ATTTATGTATTTCTATATTAGAATTTAAAT	TAAAATCAAATTTTAATTATATAATTTCTCTCTTTT
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTACATCAGTTTCTTTTAATTTGCTAACATCTAAGAAA
ATTTATGTATTTCTATATTAGAATTTAAAT	AATAATTTTACAGTGTATTTTGAAGGTAGAAGGATAAG
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTCTGCTCTTCTGCTGTTCTAACTCCCGCAGTTATC
ATTTATGTATTTCTATATTAGAATTTAAAT	AACATAGCAACAGCTGCATCATCATTAATCAATGATTCA
ATTTATGTATTTCTATATTAGAATTTAAAT	TTATTTAAACTTGCAAAAAGTTCAACCATTCGTATTT
ATTTATGTATTTCTATATTAGAATTTAAAT	TAGTGACAGAAATAACTTGACCTGATAGCTGTAGATTTC
ATTTATGTATTTCTATATTAGAATTTAAAT	TTAGATTTAAGAATAGAGAGTGACCAGGATTTACAA
ATTTATGTATTTCTATATTAGAATTTAAAA

>NZ_CP013334|2|1|583224-585597|CRT
ATTTATGTATTTCTATATTAGAATTTAAAT	GCTTTTGTATATTCTAAAATTATTTCTTCAGTTGGAA
ATTTATGTATTTCTATATTAGAATTTAAAT	CTGTCTATGTTTAATATGCAAATATCGCCAATTTTAT
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTTTTCTTATTTCTAGCATCATGTCCTCCTGTTTTC
ATTTATGTATTTCTATATTAGAATTTAAAT	GGGTTTTCTTCTTTTTCCTGAAAGTTTTGAAACAGTTC
ATTTATGTATTTCTATATTAGAATTTAAAT	GTGGTATTTAATAAATATTAAAAATATAGATAAAAAAG
ATTTATGTATTTCTATATTAGAATTTAAAT	CAACTAAAAAATTACTAACTCTAACAGTTTCTTCT
ATTTATGTATTTCTATATTAGAATTTAAAT	GTGCCTTTCATTCCAGGGGTTAAAGGTTAAAATAAT
ATTTATGTATTTCTATATTAGAATTTAAAT	TGTTCTAAAACTTTATCTATAGCTTTTTCAAAATTA
ATTTATGTATTTCTATATTAGAATTTAAAT	TTCTATCCCATTTTTTAGTAGGTTCTTTTACTATTAA
ATTTATGTATTTCTATATTAGAATTTAAAT	TGGGGAATTGGTATAGGTTTAGAAAACTTAGATTTA
ATTTATGTATTTCTATATTAGAATTTAAAT	TTAGCAAGTTTTAAATGTATTTCTTTTCTTTTCTTC
ATTTATGTATTTCTATATTAGAATTTAAAT	GCTACCATAAAAGCAATGTCTTTATCTCTACATCTC
ATTTATGTATTTCTATATTAGAATTTAAAT	ATAGTATTTGATGGTGCAGTAGGAAGCGGACAGTTAGA
ATTTATGTATTTCTATATTAGAATTTAAAT	ACACCAGGAAACAAAATATAGAAACCATATCTTTTTGT
ATTTATGTATTTCTATATTAGAATTTAAAT	GGTTGACTTGTGTATAATTCCAATATTATTCCGTTTT
ATTTATGTATTTCTATATTAGAATTTAAAT	AATAAATCTAAAACATTCCAATTTTCTTTGCTTGAA
ATTTATGTATTTCTATATTAGAATTTAAAT	TGTCTAGGTGGAAGATTTAAAATAAGAACTTCATCT
ATTTATGTATTTCTATATTAGAATTTAAAT	TTATTAGATGTAAATTTACAAGATACAACACAAAA
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTTTTCTGAAAATGGATGATACTTAATTTTATTTCTA
ATTTATGTATTTCTATATTAGAATTTAAAT	TCAAATTTAATTGTTAGATTTGGTGGTGGAGTTTCAA
ATTTATGTATTTCTATATTAGAATTTAAAT	ATCTCCTAACAGGTCTAATCTGTAATCTCTAGCATAT
ATTTATGTATTTCTATATTAGAATTTAAAT	AGTCTATATTTAAAAGATGGAAATAATTTATTATTGG
ATTTATGTATTTCTATATTAGAATTTAAAT	AGTGCTATCAAAAGTAGTTTTTGAGTTTACTCCATAAT
ATTTATGTATTTCTATATTAGAATTTAAAT	TTGTCAACTATTGCTTTTACAGCTGTAGTCAATAA
ATTTATGTATTTCTATATTAGAATTTAAAT	AATGAAACTCTATATTTTAGTGCTTCTTATAGAAATA
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTACTTGGATTATAGCTGGAGTTGCTTTAGTTATT
ATTTATGTATTTCTATATTAGAATTTAAAT	CACAAATCTATAAACTTCTAATTTCTCTGAGTTCTGTAT
ATTTATGTATTTCTATATTAGAATTTAAAT	TAAAATCAAATTTTAATTATATAATTTCTCTCTTTT
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTACATCAGTTTCTTTTAATTTGCTAACATCTAAGAAA
ATTTATGTATTTCTATATTAGAATTTAAAT	AATAATTTTACAGTGTATTTTGAAGGTAGAAGGATAAG
ATTTATGTATTTCTATATTAGAATTTAAAT	ATTCTGCTCTTCTGCTGTTCTAACTCCCGCAGTTATC
ATTTATGTATTTCTATATTAGAATTTAAAT	AACATAGCAACAGCTGCATCATCATTAATCAATGATTCA
ATTTATGTATTTCTATATTAGAATTTAAAT	TTATTTAAACTTGCAAAAAGTTCAACCATTCGTATTT
ATTTATGTATTTCTATATTAGAATTTAAAT	TAGTGACAGAAATAACTTGACCTGATAGCTGTAGATTTC
ATTTATGTATTTCTATATTAGAATTTAAAT	TTAGATTTAAGAATAGAGAGTGACCAGGATTTACAA
ATTTATGTATTTCTATATTAGAATTTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013334.1\|WP_029492139.1\|600412_600964_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP013334.1\|WP_029492132.1\|581789_582746_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_CP013334.1\|WP_005917173.1\|586918_587437_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|376808
NZ_CP013334.1\|WP_005917171.1\|587450_588647_+\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP013334.1\|WP_029492127.1\|575112_576666_+\|type-I-CRISPR-associated-protein-Cas8a1/Csx8	cas8b2	cd09744_cas8b2_CAS-I-B	gnl\|CDD\|286705
NZ_CP013334.1\|WP_029492138.1\|599183_600395_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP013334.1\|WP_029492135.1\|592600_594184_+\|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl\|CDD\|238270
NZ_CP013334.1\|WP_029492126.1\|574370_575123_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP013334.1\|WP_029492131.1\|581248_581743_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP013334.1\|WP_029492133.1\|585895_586900_+\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236609
NZ_CP013334.1\|WP_029492137.1\|598581_599130_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP013334.1\|WP_029492123.1\|571591_572488_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029492129.1\|577575_578676_+\|CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|274218
NZ_CP013334.1\|WP_029492130.1\|578764_581179_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP013334.1\|WP_029492128.1\|576678_577563_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09650_cas7_CAS-I	gnl\|CDD\|273846
NZ_CP013334.1\|WP_029492136.1\|595912_598399_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341240
NZ_CP013334.1\|WP_029492125.1\|573442_574342_+\|Abi-family-protein	unknown	unknown	gnl\|CDD\|227160
NZ_CP013334.1\|WP_005917161.1\|594233_595745_-\|DUF1846-domain-containing-protein	unknown	unknown	gnl\|CDD\|378092
NZ_CP013334.1\|WP_005917178.1\|582750_583029_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|224262
NZ_CP013334.1\|WP_029492134.1\|588736_592312_+\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231

Protein	Function_ID	Function_description	E-value
NZ_CP013334.1\|WP_029492139.1\|600412_600964_-\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	6.34431e-82
NZ_CP013334.1\|WP_029492132.1\|581789_582746_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	4.92794e-168
NZ_CP013334.1\|WP_029492129.1\|577575_578676_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|274218	TIGR02593, CRISPR-associated_protein_Cas5, CRISPR-associated protein Cas5, N-terminal domain. This model represents a shared N-terminal domain, about 43 amino acids in length, common to a number of related protein families each of which is associated with a distinct subtype of CRISPR/cas system, where CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeat and Cas is an abbreviation for CRISPR-associated. Members of this family are widely distributed enough that we designated the family Cas5. Homology appears remote, or absent, between the more C-terminal regions different subfamilies of these proteins, which typically are 210 to 265 amino acids in total length. Cas5 proteins of six different CRISPR/cas subtypes so far defined are described by respective full-length models TIGR01868, TIGR01876, TIGR01895, TIGR01874, TIGR02586, and TIGR02592. The best characterized protein in this family is DevS or Myxococcus xanthus, a Cas protein that appears to participate in a species-specific developmental pathway.	3.26332e-09
NZ_CP013334.1\|WP_005917171.1\|587450_588647_+\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP013334.1\|WP_029492127.1\|575112_576666_+\|type-I-CRISPR-associated-protein-Cas8a1/Csx8	gnl\|CDD\|286705	pfam09657, Cas_Csx8, CRISPR-associated protein Csx8 (Cas_Csx8). Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry describes proteins of unknown function which are encoded in the midst of a cas gene operon.	0
NZ_CP013334.1\|WP_029492138.1\|599183_600395_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	1.47336e-40
NZ_CP013334.1\|WP_029492135.1\|592600_594184_+\|phosphoenolpyruvate-carboxykinase-(ATP)	gnl\|CDD\|238270	cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.	0
NZ_CP013334.1\|WP_029492126.1\|574370_575123_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.6702e-23
NZ_CP013334.1\|WP_029492131.1\|581248_581743_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.01049e-61
NZ_CP013334.1\|WP_029492133.1\|585895_586900_+\|phosphate-acetyltransferase	gnl\|CDD\|236609	PRK09653, eutD, phosphotransacetylase.	2.51463e-156
NZ_CP013334.1\|WP_029492137.1\|598581_599130_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.2417e-36
NZ_CP013334.1\|WP_029492136.1\|595912_598399_-\|AMP-binding-protein	gnl\|CDD\|341240	cd05914, LC_FACL_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL). The members of this family are bacterial long-chain fatty acid CoA synthetase, most of which are as yet uncharacterized. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions.	0
NZ_CP013334.1\|WP_005917173.1\|586918_587437_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|376808	pfam02525, Flavodoxin_2, Flavodoxin-like fold. This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC:1.6.99.2. These enzymes catalyze the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species. This enzyme uses a FAD co-factor. The equation for this reaction is:- NAD(P)H + acceptor <=> NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy. The family also includes acyl carrier protein phosphodiesterase EC:3.1.4.14. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP. This family is related to pfam03358 and pfam00258.	1.07746e-33
NZ_CP013334.1\|WP_029492130.1\|578764_581179_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.21195e-114
NZ_CP013334.1\|WP_029492128.1\|576678_577563_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|273846	TIGR01875, CRISPR-associated_protein_Cas7/Cst2/DevR, CRISPR-associated autoregulator DevR family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This model represents one such family, represented by MJ0381 of Methanococcus jannaschii. This family includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development. [Regulatory functions, DNA interactions, , ].	7.74839e-56
NZ_CP013334.1\|WP_029492125.1\|573442_574342_+\|Abi-family-protein	gnl\|CDD\|227160	COG4823, AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms].	1.45676e-113
NZ_CP013334.1\|WP_005917161.1\|594233_595745_-\|DUF1846-domain-containing-protein	gnl\|CDD\|378092	pfam08903, DUF1846, Domain of unknown function (DUF1846). This family of proteins are functionally uncharacterized. Some members of the family are annotated as ATP-dependent peptidases. However, we can find no support for this annotation.	0
NZ_CP013334.1\|WP_005917178.1\|582750_583029_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|224262	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms].	1.95202e-30
NZ_CP013334.1\|WP_029492134.1\|588736_592312_+\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0

>NZ_CP013334.1|WP_005917178.1|582750_583029_+|CRISPR-associated-endonuclease-Cas2
MYVVAVYDISLDEKGSRNWRKIFGICKRYLHHIQNSVFEGELSEVDIQRLKYEVSKYIRDDLDSFIIFKSRNERWMEKEMLGLQEDKTDNFL
>NZ_CP013334.1|WP_029492132.1|581789_582746_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKRKDNTITFINEKDEKRDIPIEMVDDFYVMSEMSFNTKFINYISQFGIPIHFFNYYTFYTGSFYPREINISGQLLVKQVEHYTNEQKRVEIAREFIEGASFNIYRNLRYYNGRGKDLKFYMDQIEELRKHLKEVNNVEELMGYEGNIRKIYYEAWNIIINQEIDFEKRVKNPPDNMINSLISFVNTLFYTKVLGEIYKTQLNPTVSYLHQPSTRRFSLSLDISEVFKPLIVDRLIFSLLNKNQITEKSFVKDFEYLRLKEDASKLIVQEFEDRLKQIITHKDLNRKISYQYLVRLECYKLIKHLLGEKKYKSFQMWW
>NZ_CP013334.1|WP_029492131.1|581248_581743_+|CRISPR-associated-protein-Cas4
MDKDITGLMVYYYEVCKRKLWYFINEIQLEENNSNVILGKLLEENTYTRDEKKININGIINIDFIRSKKILHEIKKSNSIEPASLLQIQYYLYYLEKKGLVGLKGILDYPLLKQTVEVNLTDKDRENLDNIIIGIKEILRKESPPTLEKKSICKKCAYFDLCFV
>NZ_CP013334.1|WP_029492130.1|578764_581179_+|CRISPR-associated-helicase/endonuclease-Cas3
MLDEELLKKYKAKSDKSIFEHNQDLKKQKDVLINLGYLNDKEKIELLSYAIDYHDSGKINLKFQRRIEENIKRINGEKYNSKYLKFDKENEIEHNILSAFLINSQDFNSEKEYLAVLYSVIFHHRYSDAISTINNQIFPNIEEILEDNLPNGVVTYEGDIPLELNFQDLNTVENIKLLGLLMKCDHSASGGYEIEYPNDFLEDALNNLLSEFKEKDKSADWNDMQKFCKENNDKNIIAIADTGMGKTEGGFLWGGNNKIFFVLPLRTAINAMYKRFDEVIIKGENKEERVGLLHSNSLEYYLNNKKELIIDDKDEKEMDILEYNKRGKHLSLPVTICTPDQIFNFILKYKGYESKLATLSYSKIILDEMQMYDASLLAAVIFGITKIIEMGGKIAIVTATFPPIIEYFLNKYLMKDNKNVIKDLDKPEEIVEEPIFRKKKFTNNEKIRHNIVLIDDEIGIEQILWQFRKNRKEKKKSNKILVICNTIKKAQEIYLKLKEHDDLKDKINMLHSNFIREDRENKEKEILDFGKTEFDGEGIWISTSLVEASLDIDFDYLFTELQDLNSLFQRFGRCNRKGKKSVDEANCFIYLKIEDKYLKEKGSKYGFIDKDIYENSKKGLENYCKVISKNEIENFENYNELFKNYSKQINEGDKIKLIEENLSFENLKESNFVDEFKDAYKKYQNILDSDKNAQDDLKLRDIQSVTVIPYNIYQENEENIKELIKKIEDKNLSLEERQNAKTDLLKKTLSIQYYQLSEYFKILDSKEYSSNSINKFEKIIVAISDYDKELGFCATKNSKNFYFI
>NZ_CP013334.1|WP_029492129.1|577575_578676_+|CRISPR-associated-protein-Cas5
MEALRIILKQSSANYRKAGTVDNKMTYPLPIPSTVIGALHNICGYTEYHSMDISIQGKFTSLSRRVYTDYCFLNSALDDRGNLVKVVDPDTFSGAFVKVASAKKSQGNSFKDRITIQVHNEELLQEYCNLKEKSKEIEELKNSEYKKKLEEFKVLKKEIADKKKKEDKKSETFKQLSEEEKKIKLDEEKYKEDFKKFEYENYTKPYSYFQNLVTSLKSYEVLNDIFLILHIKSDEETLKDIENNIFNLQSLGRSEDFVEVVECKMVELHEFSKNKRLYNFSMYLKNDDITTKKILPLSVDEDHKAGGTKYYLDKNYKLEKNKRIFIKIPAVYCNAVGAKNSSENVKLDYLEILGQNKKQEILVNFL
>NZ_CP013334.1|WP_029492128.1|576678_577563_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKKDALTITVVANMTSNYSEGLGNISSVQKIYRDRNVYAIRSRESLKNAIMVQSGMYEDLETEANGATQKKVDENLNAANCRALEGGYMNTKESTYVRNSSFYLTDAISTESFINETRFHNNLYLATNFANANNLNVQKDAGKVGLMPYQYEYEKSLKVYSLTIDLEKVGKDPNFTDKEADNKEKFERVKSILEAIENLSLVVKGNLDNAEPVFAIGGLSLRKTHYFENVVRVEQGALVLGEALKEKKEDGFSCALLKGDIFTNEVEIIKELQPISMREFFKSLIEDVKNYYGA
>NZ_CP013334.1|WP_029492127.1|575112_576666_+|type-I-CRISPR-associated-protein-Cas8a1/Csx8
MKYDIDKNEYGFDTAVSASDWKYSAAITGLIYYFKELEKKYEIKNVTIDEITDSYLLYNKEDINEKSYLDFIERFYSEETLAHKKIEIQLKHTKEFTPEIIKSIKENMSANTVLKEVFSKVKFNGTNKDEVLKLLDKERDYIIKKSFENKDNLYANYCQVSNGKSKLFTSSAKSPCRVRGYYFDPGRKSKATAYNFTSSSIDYLDDEIFDFIPFAFTGNSFETIFLNDNLDLEILENMNYKLREYFSEEKERETEEIKKFKQEKAIKEKKNEEIDGNLTSTPLKKIFLNILRKKSDYIKYGIEIIYKNRDKEYFETWYLRNESIEVLKAVEDFSKIDIRIKITDKYYFNLLDEIFSAILNLSLLTNSILYLLKDRESFIKVDASRENLTKLFKYNYAINQLIKVNQIIRNGGKEMNWKLKNSIENCAEKVINYFEKQKTSNKLVSYRQKLLSSVVAKNHKRILDVLTQLSVYSGVHFDFVFNYIENQTQNEDIIHYFILKLVPTDEKEKIKENEDKE
>NZ_CP013334.1|WP_029492126.1|574370_575123_+|CRISPR-associated-endoribonuclease-Cas6
MRFILSFELDTVRLPIEIRRTVISFFKKSLTEAHNSKYYPDFFTGTQIKDYSFSVIFPLDKYFREEIYLKKPEMKVVVSCSEKNNIGFLLVNVFLSQRNKKFPLPKDTCMILKDVRIIEEKIIKGEEAIFQTTIGGGIVVREHNKEENKDIYYSMENERFEEVLNWLMKERFKRLGYPENIFKDFSCELLEGRKIVVKHFDLKFPVTTGRFKIKAPKMLLEEIYRTGMGSRLSQGFGLLEYLGGEIKDEV
>NZ_CP013334.1|WP_029492125.1|573442_574342_+|Abi-family-protein
MSCSESHLSYEEQLNKFIGRGMLVKNKTKALERLKHISYYKIKQFSTFFMDNNGNYKQNTSFEAVIQNFYFDKNLRMEFLKCSEKIELSIKNKIAYLLGVKYGAFGYLNFSSWCDRSRPKQEIQNEELKFKKKIQKKMKLFSDNSIIKDFVINNPTETYLSIWRLSEVLTFGEALYLFEMMSQKNKVSIAHNYNLKVDEFISYANNIKLIRNLCAHNMSIIHLKLRTIPKINTDFSNILNRYDRIFSSVLIIIYFIKNINPNYKFKTLYHTVCQLIKRNKVAKIYGIKNYKLLKKYIKG
>NZ_CP013334.1|WP_029492123.1|571591_572488_+|hypothetical-protein
MIKFLKKNKVVIIIFVFSISPIILNLFFFLTDYIAEKEVKCGEILYSSLSNEKWLEFWGTFMPALAAFSFLYFTKKQIDSIREQLDFEKTKYEEEINSNKETLEIEKEKYKKEKNILIFEKNVELELTELKLSKMIVHNLLVELDIADIDSCIETPEKYSRKIKKINSKLTAVDFLTNIRIQDVIKIDKKIDECREESYEKLKKLHELYTIILKESYNNKYNKEDEMDKEKFFIVLNEIRKLQEKDLFKITDFIDEITIAKVYNEFYNITLNTLLKYFYLKNDKMKYERIVIYNKEEI
>NZ_CP013334.1|WP_029492133.1|585895_586900_+|phosphate-acetyltransferase
MSFLGQVRKKALQANRRIVLPESSDERVIRATSQILKEGLAQVILVGNHETIMNSAKAYEVSLSGVKIVDPYNFERLNDYINKLVELRSKKGMTPEEAKKLLQTDPNFFGAMLVKMGDADGMVSGSASPTANVLRAAIQVIGTQPGVKTVSSVFIMELSQFKDLFGSILVFGDCSVIPVPTSEQLADIATSAAETAVRIAGINPRVALMTFSTKGSAKHECVDRIIEAGRILRERKVQFRFDDELQADAALVKSVGEIKAPLSDVSGNANVLIFPTLSAGNIGYKLVQRLAGANAYGPIIQGLNSPVNDLSRGCSVEDIVVLTAITSAQACIDC
>NZ_CP013334.1|WP_005917173.1|586918_587437_+|NAD(P)H-dependent-oxidoreductase
MKKTLIILAHPDLTRSMANKKLKEEVEKNTDIIIHNIYEEYPNGKINLEKELNLLKETGTLILQFPMQWFNCPSLLKEWIDTVFMSAHFTENEEKILANKKIGLAVTTGGVKEIYDGKLEGILAPFLLSIDYLNAKNIPIFSIHGVMPGKISETEIEENAKKYVEYIKNNIE
>NZ_CP013334.1|WP_005917171.1|587450_588647_+|acetate-kinase
MKILVINCGSSSLKYQLINPETEEVFAKGICERIGIDGSKMEYEVVAKDFEKKLETPMPSHKEALELVISHLTDKEIGVIASVDEVDAIGHRVVHGGEEFAQSVLINDAVLKAIEANNDLAPLHNPANLMGIRTCMELMPGKKNVAVFDTAFHQTMKPEAFMYPLPYEDYKELKVRKYGFHGTSHLYVSGIMREIMGNPEHSKIIVCHLGNGASITAVKDGKSVDTSMGLTPLQGLMMGTRCGDIDPAAVLFVKNKRGLTDAQMDDRMNKKSGILGLFGKSSDCRDLENAAVEGDERAILAENVSIHRLKSYIGAYAAIMGGVDAICFTGGIGENSSTTREKALEGLEFLGVDLDKEVNSVRKKGNVKLSKDSSKVLVYKIPTNEELVIARDTFRLAK
>NZ_CP013334.1|WP_029492134.1|588736_592312_+|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MAKKMQTMDGNQAAAYASYAFTEVAGIYPITPSSPMAEYTDEWASRGVKNIFGVPVKLVEMQSEGGAAGTVHGSLQAGALTTTYTASQGLLLKIPNMYKIAGELLPGVIHVSARSLSAQALSIFGDHQDIYAARQTGFAMLATNSVQEVMDLAGVAHLAALKSRVPFLHFFDGFRTSHEIQKVEVIEYDDLKKLIDWKALDEFRKRALNPEHPVTRGTAQNDDIYFQTREVQNKFYDAVPDIVADYMKEISKITGRDYKPFNYYGAPDAERIIIAMGSVCEAAQEVIDYLIEKGEKVGLISVHLYRPFSAKYFFDVLPKTVKRISVLDRTKEPGSIGEPLLLDIKALFYNKENAPLIVGGRYGLSSKDTTPAQVLAVFENLKKDEPKDAFTVGIVDDVTHTSLEVGPAIALADPSTKACLFYGLGADGTVGANKNSIKIIGDKTDLYAQGYFAYDSKKSGGVTRSHLRFGKKPIRSTYLVSKPTFVACSVPAYLHQYDMTSGIKEGGKFLLNCVWSKEEAIENIPNNVKRDLAVNKARLFIINATALAHEIGLGQRTNTIMQAAFFKLAEIIPFEEAQQYMKDYAKKSYAKKGDEIVQLNYNAIDRGANDIVEIEVDPAWANLEVTALNEPKETAGCGGCCPTPSDFVKNIARPINAIKGNDLPVSAFLGYEDGTFENGTSAFEKRGVAVDVPIWDVDKCIQCNQCSYVCPHAAIRPFLINEDELKASPEPLATKKPVGKGLDGLAYRIQVSALDCVGCGSCAHVCPAPGKALVMRPIAESLEAHEDVKTDYLYNNVDYRSDLMPVDTVKGSQFSKPLFEFHGACPGCGETPYIKLITQLYGDRMMVANATGCSSIYSGSAPSTPYTTNKNGEGPSWGSSLFEDNAEYGFGMHIGVEALRSRIQHTMEENMDKVDEDIATLFKDWIANRQFSVRTREIRDILVPKLEALNTDFAKEILDLKQYLIKKSQWIIGGDGWAYDIGYGGLDHVLASNEDINILVVDTEVYSNTGGQASKSTPTGAVAKFAASGKPVKKKDLAAIAMSYGHIYVAQVSMGANQQQALKAIKEAEAHQGPSIIIAYSPCINHGIKKGMSQAQTEMKLATECGYWPIFRYNPSVEKLGKNPLQIDCKEPKWEKYEEYLTGEVRYQTLTKSNPEEAKILFEINKRDAQKRWRQYKRMAALDYSEEKETE
>NZ_CP013334.1|WP_029492135.1|592600_594184_+|phosphoenolpyruvate-carboxykinase-(ATP)
MKMYGLEKLGISNMAAVHYNLSPAQLVEKALANNEGTLSDTGAFVISTGKYTGRAPDDKFFVDTPEVHKYIDWSRNQPIEKEKFKAIFGKLIAYLQNREIFIFDGKAGANPEYTRRFRVINELASQNLFIHQLLIRTDEEYNENNNIDFTIVSAPNFNCVPEIDGVNSEAAIIIDFESKLAIICGTRYSGEIKKSVFSIMNYIMPHENILPMHCSANMDPVTHETAIFFGLSGTGKTTLSADPNRKLIGDDEHGWCDKGIFNFEGGCYAKCINLTEESEPEIYRAIKFGSLVENVVVDPITRKIQYEDASITPNTRVGYPIHYIPNAELSGVGGIPKVVIFLTADSFGVLPPISRLSQEAAMYHFVTGFTAKLAGTELGVKEPVPTFSTCFGEPFMPMDPSVYAEMLGERLKKHNTKVYLINTGWSGGAYGTGKRINLKYTRAMVTAVLNGYFDNAEYKHDDIFNLDIPQSCPGVPSEIMNPIDTWPDRDKYIIAAKKLANLFYNNFKEKYPNIPENITNAGPKYND
>NZ_CP013334.1|WP_005917161.1|594233_595745_-|DUF1846-domain-containing-protein
MKIGFNHEKYLEEQSKYILERVNNHDKLYIEFGGKLLGDLHAKRVLPGFDENAKIKVLNKLKDKIEVIICVYAGDIERNKIRGDFGITYDMDVFRLIDDLRENDLKVNSVVITRYEDRPSTDLFITRLERRGIKVYKHFATKGYPSDVDTIVSDEGYGQNSYIETTKPIVVVTAPGPGSGKLATCLSQLYHEYKRGRDVGYSKFETFPVWNVPLKHPLNIAYEAATVDLNDVNMIDPFHLEEYGEIAVNYNRDIEAFPLLKRIIEKITGKKSIYQSPTDMGVNRVGFGITDDEVVRKASEQEIIRRYFKTGCDYKKGNIDLETFKRSEFIMHSLGLKEDDRKVVTFARKKLELLNEEKSDKQKTVSAIAFEMPDGKIITGKKSSLMDAPSAAILNSLKYLSNFDDELLLISPTILEPIIKLKEKTLKNRHIPLDCEEILIALSITAATNPMAEVALSKLSQLEGVQAHSTHILGRNDEQYLRKLGIDVTSDQVFPTENLYYNQ
>NZ_CP013334.1|WP_029492136.1|595912_598399_-|AMP-binding-protein
MQIVTDKNKVALYYKDLAITYKEFILNTKKIKEFTKIKQFTNNMIYMENRPELLYSFFAIWDSRATCVCIDASSTAEEMTYYIDNSDVTKIFTSNMQVEKVKEALSILNKQIEIVIVDEIKLDEIKIDENSSENLVINSPEKEDTALILYTSGTTGKPKGVMLTFDNILANVDSLDVYKMYEETDITIALLPLHHILPLLGTGVMPLLYSATIVFLEDISSVALIDAMKKYKVTMLIGVPKLWEVMHKKIMDTINSKGITRFIFKLAKKINSLTFSKVIFKKVSEGFGGHIKFFVSGGSKLNPQITKDFHTLGIKICEGYGMTETSPIISYTPRNDIVPDSAGRVIKDVEVRIADDNEILVKGRNVMKGYYKNPEATAEIIDKDGWLHTGDLGKLENGYLYVTGRKKEMIVLSNGKNINPIEIETKISSMTNLISEIVVTEYNSILTAVIHPDLEKVKEEKIDNIYENLKWQVVDKYNQKTSDYKKILDVKIVNEDFPKTKIGKIKRFMIADMLDGKIEKQERKPEPDFEEYNKIKKYLVGIKEKEVYFDSHIEIDLGMDSLDMVEFQHFLDLNYGIKEENLISKHSTLLELANYIRDNRNQEKIGNLDWKEIINKDTKADLPSSSFVAVIFKFLSFILFKTFFRVKVKGKEKIETERPTIFVANHQSFLDGFLFNYSVPLKVMKKTYFLATVVHFKSSIMKFMANSSNVVLVDMNKDIAEVMQILAKLLKENKNVAIYPEGLRTRDGKMNKFKKSFAILAKELNVDVQPYVIDGAYDLFPTGKKFPRPGKITVEFLDKIKVEKLTYDEIVNEAYSAIKNKVEPNKEN
>NZ_CP013334.1|WP_029492137.1|598581_599130_+|TlpA-family-protein-disulfide-reductase
MKKKILVLLLFILSLTSFAVPLNNMDKDGNVTLPNIELVDQYGKKHNLQDYKGKVIMINFWVSWCSDCKAEMPKVVELYKEYGENKKDLIILGVATPISKEYPNNKDRIDKAALLKYIKDNGYIFPSLLDETGKTYAEYEVIEYPSTYIIDKNGHLKVYVQGAVSKEELKKYIESVLNPIQK
>NZ_CP013334.1|WP_029492138.1|599183_600395_-|OmpA-family-protein
MKKNFLMSVVVAALVVFGVKTYYDKRTTNNTEVSAEKENKGSNEAGTKEVSDEMLVPGYALGEIPAITIPEIPDLSIKENPNAKITLDMTKKISAVPGISVTPVRVENSNIVGGDYTMQIGQNGNGQFIDKNKTVQTDGNGAGQYIDENVTIQRNEDGSGQYINKVTGVTLQVNPDGSGQFIDSINKFAYQIEADGAGQYVDEKNNIKIVIDQKGSTYTNNNITIENNVDGSGTYSDTDKDLLIKNDGKGKAIITLKGKTTEVEAKPFERIEKFPKLKMVPPIPSIEANSLLITLDSGILFDVDKYDLRPEAERALASLAVVLKEADVKALQIDGHTDSDASDEHNQVLSENRANAVKNFLTAQGLTAEITINGYGESRPIATNDTPEGKQKNRRVEIIIPTI
>NZ_CP013334.1|WP_029492139.1|600412_600964_-|LemA-family-protein
MIALGVIIGIIVILAVVAISYKNKFVVLDNRVKNSWSQIDVQMQNRFSLVPNLVETVKGYAKHEKETFEGIANAKTRYMSATSPEEKMEANNQLSGFLGRLFAISEAYPELKANTSFENLQAQLVEVENKIRFARQFYNDTVTEYNQTIQMFPGSLFAGFFNYHNAELFKANEMAREEVQVKF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013334_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013334_3

1004192-1004296

Orphan

Consensus_repeat	Method
TTTTTAGGAATACAATCCATAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013334_3

>merge|NZ_CP013334|3|1004192-1004296|CRISPRCasFinder
TTTTTAGGAATACAATCCATAAAAAAATTAATTTTATAAATTTAAGGAATATACTCCTAAAACTTTTTTATTTTTATGTTTTTTAGGAATATAATCCATAAAAAA

>NZ_CP013334|3|3|1004192-1004296|CRISPRCasFinder
TTTTTAGGAATACAATCCATAAAAAA	ATTAATTTTATAAATTTAAGGAATATACTCCTAAAACTTTTTTATTTTTATGT
TTTTTAGGAATATAATCCATAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013334.1\|WP_029491353.1\|1008967_1009726_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491361.1\|1001463_1002369_-\|DKNYY-domain-containing-protein	unknown	unknown	gnl\|CDD\|372659
NZ_CP013334.1\|WP_029491360.1\|1002385_1002889_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491362.1\|1000724_1001447_-\|precorrin-2-C(20)-methyltransferase	unknown	unknown	gnl\|CDD\|225152
NZ_CP013334.1\|WP_029491365.1\|998454_998682_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491368.1\|995662_996910_-\|putative-DNA-modification/repair-radical-SAM-protein	unknown	unknown	gnl\|CDD\|226727
NZ_CP013334.1\|WP_029491363.1\|999216_999990_-\|precorrin-4-C(11)-methyltransferase	unknown	unknown	gnl\|CDD\|225430
NZ_CP013334.1\|WP_029491352.1\|1009722_1010496_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491354.1\|1008236_1008971_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_005909181.1\|1007650_1008217_-\|GrpB-family-protein	unknown	unknown	gnl\|CDD\|377252
NZ_CP013334.1\|WP_029491355.1\|1006521_1007649_-\|cobalamin-biosynthesis-protein-CbiD	unknown	unknown	gnl\|CDD\|224815
NZ_CP013334.1\|WP_029491351.1\|1010492_1011251_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_032881860.1\|1005878_1006577_-\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	unknown	unknown	gnl\|CDD\|274146
NZ_CP013334.1\|WP_029491366.1\|997924_998452_-\|DMP19-family-protein	unknown	unknown	gnl\|CDD\|379547
NZ_CP013334.1\|WP_029491358.1\|1004326_1004896_-\|precorrin-6Y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiT	unknown	unknown	gnl\|CDD\|225151
NZ_CP013334.1\|WP_029491364.1\|998812_999199_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319937
NZ_CP013334.1\|WP_029491359.1\|1002897_1004136_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP013334.1\|WP_029491357.1\|1004917_1005892_-\|3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240639
NZ_CP013334.1\|WP_005900196.1\|1011275_1011926_-\|precorrin-8X-methylmutase	unknown	unknown	gnl\|CDD\|376825
NZ_CP013334.1\|WP_029491367.1\|996993_997896_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013334.1\|WP_029491361.1\|1001463_1002369_-\|DKNYY-domain-containing-protein	gnl\|CDD\|372659	pfam13644, DKNYY, DKNYY family. This family represents a group of proteins found enriched in fusobacteria. These proteins contain many repeats of a DKNXXYY motif. The repeats are spaced at about 35 amino acid residues intervals. These proteins are likely to be associated with the membrane. The specific function of these proteins is unknown.	9.13949e-12
NZ_CP013334.1\|WP_029491362.1\|1000724_1001447_-\|precorrin-2-C(20)-methyltransferase	gnl\|CDD\|225152	COG2243, CobF, Precorrin-2 methylase [Coenzyme metabolism].	9.27895e-89
NZ_CP013334.1\|WP_029491355.1\|1006521_1007649_-\|cobalamin-biosynthesis-protein-CbiD	gnl\|CDD\|224815	COG1903, CbiD, Cobalamin biosynthesis protein CbiD [Coenzyme metabolism].	6.11127e-147
NZ_CP013334.1\|WP_029491368.1\|995662_996910_-\|putative-DNA-modification/repair-radical-SAM-protein	gnl\|CDD\|226727	COG4277, COG4277, Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only].	0
NZ_CP013334.1\|WP_029491363.1\|999216_999990_-\|precorrin-4-C(11)-methyltransferase	gnl\|CDD\|225430	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism].	5.61235e-149
NZ_CP013334.1\|WP_005909181.1\|1007650_1008217_-\|GrpB-family-protein	gnl\|CDD\|377252	pfam04229, GrpB, GrpB protein. This family has been suggested to belong to the nucleotidyltransferase superfamily. It occurs at the C-terminus of dephospho-CoA kinase (CoaE) in a number of cases, where it plays a role in the proper folding of the enzyme.	4.47965e-54
NZ_CP013334.1\|WP_032881860.1\|1005878_1006577_-\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	gnl\|CDD\|274146	TIGR02467, Probable_cobalt-precorrin-7_C5-methyltransferase, precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.	2.17603e-71
NZ_CP013334.1\|WP_029491366.1\|997924_998452_-\|DMP19-family-protein	gnl\|CDD\|379547	pfam14300, DUF4375, Domain of unknown function (DUF4375). This family of proteins is found in bacteria. Proteins in this family are typically between 156 and 204 amino acids in length. There is a single completely conserved residue G that may be functionally important.	8.26646e-35
NZ_CP013334.1\|WP_029491358.1\|1004326_1004896_-\|precorrin-6Y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiT	gnl\|CDD\|225151	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].	1.75307e-72
NZ_CP013334.1\|WP_029491364.1\|998812_999199_-\|VOC-family-protein	gnl\|CDD\|319937	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the larger superfamily, this family contains members with or without domain swapping.	5.17081e-33
NZ_CP013334.1\|WP_029491359.1\|1002897_1004136_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.33953e-70
NZ_CP013334.1\|WP_029491357.1\|1004917_1005892_-\|3-phosphoglycerate-dehydrogenase	gnl\|CDD\|240639	cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	9.64245e-109
NZ_CP013334.1\|WP_005900196.1\|1011275_1011926_-\|precorrin-8X-methylmutase	gnl\|CDD\|376825	pfam02570, CbiC, Precorrin-8X methylmutase. This is a family Precorrin-8X methylmutases also known as Precorrin isomerase, CbiC/CobH, EC:5.4.1.2. This enzyme catalyzes the reaction: Precorrin-8X <=> hydrogenobyrinate. This enzyme is part of the Cobalamin (vitamin B12) biosynthetic pathway and catalyzes a methyl rearrangement.	1.70273e-103

>NZ_CP013334.1|WP_029491359.1|1002897_1004136_-|ATP-binding-protein
MIRIDRKEYLNFLIESKDKQIIKVVSGVRRCGKSTLFEIYKDYLIKNGVEKKQIISINFEDMDYGELTDYKKLYEYIKSKMLEDKKNYIFLDEIQHVDKFEKVVDSLFIKDNVDLYITGSNAYFMSSELATLLSGRYIELKMLPLSFKEYYQARLDYENLDGEENKILKTLMQYYNEYIVNSSFPYTLQLNNNLKNIYEYLNGIYNSVLLKDIVARLKIADVMRLESVVKYIFDNIGNLTSILKIANTLTSMGRKTDTKTVEKYVKGLVDGLLIYEVNRYNIKGKEFLSTLSKYYVSDLGLRQMILGNRNIDMGHILENIIYLELLRRKANVYVGQFDKNEIDFVVINSNEVEYYQVALTILDENTLKRELAAFKNIKDNYPKYLITLDDVLPNTDYDGIKVINAFEWLLEE
>NZ_CP013334.1|WP_029491360.1|1002385_1002889_-|hypothetical-protein
MKLKKYFLFTLILAFVLSITTYSMEKIEIFNIDNEWTIPLPEDWQMEGKSPYQQYYSFYPNIPYYSTIKIYNYDIEENQNIDLLEDFKKKYPNTKIQKKKLNLNKIKIKNAEVEAYEYSFDENGTKLYAISYFILLKGNLLIANFYSISEKETEKMLEYFYSIEKIN
>NZ_CP013334.1|WP_029491361.1|1001463_1002369_-|DKNYY-domain-containing-protein
MRKMIVLIYSILSISVVAEYYKKGNEVYYEGYDHKNGKFIDYNEKVENVDLNSLEQINDFYARDKNRVYFRGKETDIDRDYIEIVRLNLVKDRDFVYYEDKKLKVSPNDSLFVNRNVTNKSLPDINVGYGFYVKDFQNAYYVKIDEDRNIKEIKLDDANVDKLVSWNDILAKDEKNIYYYGKKIDYIDASTFNGHGFGYGKDKNNIYYDVTIVKNADYKSFKEIKGYISFAKDKYNVFYEGKIIEGADIKSFEPLKNGFSKDKYGYFFNEQRLEGINYEDIKDLMNTFGVDEKKVPGYKYK
>NZ_CP013334.1|WP_029491362.1|1000724_1001447_-|precorrin-2-C(20)-methyltransferase
MTNKFYGIGVGVGDSEEITIKAINTLKKLDVVILPEAKKDDGSVAYEIAKQYMKEDVEKVFVEFPMLKSLEDRENARKENAKIVQKFLDEGKNVGFLTIGDTMTYSTYVYILEHLPEKYLVETVPGVSSFVDMASRFNFPLMIGDETLKVVSLNKKTNIEFELENNDNIVFMKVSRNFENLKQALIKTGNIDKIIMVSNCGKESQKVYYDIKDLTEDDIPYFTTLIVKKGGFEKWRKFNI
>NZ_CP013334.1|WP_029491363.1|999216_999990_-|precorrin-4-C(11)-methyltransferase
MEKYKEKVYFIGAGPGDPELITIKGQRIVKEANVIIYAGSLVPKEVIDCHKEGAEIYNSASMSLDEVIDVTVKAIKDGKKVARVHTGDPAIYGAHREQMDMLDEYGIEYEVIPGVSSFLASAAALKKEFTLPNVSQTVICTRIEGRTPVPEKESLESLAKHRASMAIFLSVHMIDKVVETLATSYPMTTPVAVVQRASWPDQKIVLGTLETIEQKVKEAGINKTAQILVGDFLGNEYEKSKLYDKYFTHEYREAVKK
>NZ_CP013334.1|WP_029491364.1|998812_999199_-|VOC-family-protein
MKYNDLIPELVVSNINISRDFYVNMLGFKVEYEREEDKFIFLSLGNIQLMLEEGSEDELSQMDYPFGKGINFTFGVGNVDELYSKLKTKKNLIKKDIEVREFRVNDEIIYTKEFSILDPDGYFIRISE
>NZ_CP013334.1|WP_029491365.1|998454_998682_-|hypothetical-protein
MKTLNEKTWQYEKHGIDGEVELFGVNIFDYKWEDTKEIAKECDFPIYKVVIDGKEHEFATGEVSNNVWCFYLPKE
>NZ_CP013334.1|WP_029491366.1|997924_998452_-|DMP19-family-protein
MKRKFINVTKEYIENLAPTDFCVELIQPAWETVNIYGSYEEYEESLKAYTTEQRYLLAMHWLGAEVANGGFQQFLSNSTGIVWEDAYKGYQAIGSEKLAYLIEELIKIYGRGIPFDREERVNILESFSQEKLEEIDAITDLYYEIEEPEWRKVTLWVKANSKKFLIQAEINDYSR
>NZ_CP013334.1|WP_029491367.1|996993_997896_-|hypothetical-protein
MKNKIEESYNKCLNLFKEGKRDTEEYRKELENVIELAKDNNEFKLCYFNAKFRLAQFYNEKHKYDLSKKHFLELINDKNMEEFKLDAIMHHAYNLRILKKYDEATFWYEKLSELSTSKYYDEAVLEGLAKCATMVNNFEKERENYSILLSSCLNKEDFKSLAEKILNLKSQLLNRIDQKQKEKINTEIIYLNNELDTAYYKLIDIKMKIAKSYFSEKKYEDCRKEVQTIFEFLEYSISDMQDYAITNANMLLGKSYFEEGNFEKAKEYFEPIANTPKEDKYYKYMISDIHSARSFLTKMK
>NZ_CP013334.1|WP_029491368.1|995662_996910_-|putative-DNA-modification/repair-radical-SAM-protein
MSKSIEEKLRILSDAAKYDVSCSSSGSSRKNTNNGLGNAAINGICHSWSADGRCISLLKILMTNYCIYDCKYCINRKDNDIERAILSPDEIVKLTINFYRRNYIEGLFLSSGIIKNADYTMELMIAVAKKLRLEEKFNGYIHMKVIPGASRQLINEIGLYVDRVSVNIEFAENTALKLLAPDKKPTDISTSMGLIRKNVLENIEDKKFFKSTPSFIPAGQTTQMIIGASGESDYSILTRSENLYKNFDLKRVYYSGYVPVNKSGILVSVDQAVPMIREHRLYQADWLLRFYNFRADEILNEKDPFVDPFLDPKTNWAIKNSHFFPIEINKASYKELLRVPGIGVTSAKRIVMTRKYSTIRYEHLKKLGIVIKRAKYFITVNGEFLGFKKENPELIRNALMEKEKMLAEQLRLFNI
>NZ_CP013334.1|WP_029491358.1|1004326_1004896_-|precorrin-6Y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiT
MHIYDKEFTQTELPMTKQEIRAVSIAKLMLKPNSILIDVGAGTGTIGIEAATYMPQGKVYAIEKEEKGLDTIKLNAEKFNLNNFELIHGKAPDAIPNIAYDRMFIGGSTGGIEEIINHFLTYAKNEAILVINCITLETQSKSLEILKEKGFKDIEVITVTVGRAKRVGPYTMMFGENPICIIKVIKRNK
>NZ_CP013334.1|WP_029491357.1|1004917_1005892_-|3-phosphoglycerate-dehydrogenase
MEKNKLKIIFLDRNTVGPFELKEIFSKYGEYIEFNLTNDDDIASYLKDYDVVILNRIRLGKKEFEKAPHLKLVLLTGTGFNHIDLLAAKEHGVSIANVAGYSTNSVSQLTMTFLLNELTKVEKLSQKVKEKKWNELSINMDNYYHIDTEDKILGILGYGNIGKKVAEYAESFGMKVMVAKIPGREYKDSSDKLDNRYDLDEVLEKCDIFSIHAPLTDITKDLINLDRMKKMKKSAIILNLGRGPIINEDDLYYALKNNIIASAATDVMTIEPPKNDCKLLELDNFTVTPHLAWKSQKSLERLFAEIENNLNLFLENKLIGVESK
>NZ_CP013334.1|WP_032881860.1|1005878_1006577_-|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE
MEKVITIKEWLVNVVQSNKINVVGLGPGNIKYLSTAGIDCIKEAEIVVGSTRQLSDLKTIISEKQEIYILGKLSELIAYLKENIEKKITIIVSGDTGYYSLVPYLSKNLSKDILNIIPNISSYQYLFSKIGENWQNFRLASVHGREFDYVKNIDDEDIAGLVLLTDDIQNPYEVSKNLYNNEVRNLTVIVGENLSYDNEKITILEIENYEKLNRKFDMNVLILKKGENYGKK
>NZ_CP013334.1|WP_029491355.1|1006521_1007649_-|cobalamin-biosynthesis-protein-CbiD
MEEKELKNGYTTGTCATAAVKVALEALVYGKKVNEVDITTLNYKTLKIPVQKLRVRNNFASCAIQKYAGDDPDVTNGISICAKVQLVKELPKVDRGAYYDNCVIIGGRGVGLVTKKGLQIAIGKSAINPGPQKMITTVVNEILSGNDEKAVITIYIPEGRAKALKTYNPKMGVIGGISVLGTTGIVKAMSEEALKKSMFAELKVMREDKNRDWVIFAFGNYGERHCEKIGLDTEQMIIISNFVGFMIEAAVKLEFKKIIMLGHIAKAIKVAGGIFNTHSRVADGRMETMASCAFLVDEKPEIIRKILYSNTIEEACDYIENNEIYHLIANRVAFKMQEYARADIEVSAAIFSFKGETIGESDNYQRMVGECGAIK
>NZ_CP013334.1|WP_005909181.1|1007650_1008217_-|GrpB-family-protein
MGKKLSELTLEELWQLFPIILTEHKDYWKEWYKEEESLLKKMLSTQNIIRISHIGSTAINGIWAKPTIDILIEIPKESKISKIKNILLENNYLLMNETEDWISLNKGYTENGFAEKVFHIHLRYIGNNNELYFRDYLNEYPEIAKEYEKLKLNLWKKFKHNRDAYTEAKTEFISKYTELARKKYKERY
>NZ_CP013334.1|WP_029491354.1|1008236_1008971_-|hypothetical-protein
MKIISKFKDFYDYKVAKYGVDEKIIYNRITKIFINFPRIFTKNEVQPDYNNKILFVGDKIVLIFKTKEKLYTQFDLEDIELLKAKSSNVRIKNFFYHMKDSELTFLDGNTIVVNSIVDVDLYEMLQMSRKTFYNFFIKNEKDLLNIDEEDNFLNEPIVLIEFLENVRDHDKRRNVSVYKRTYNPNLKELGLYFDEDFVWQSLVEFLSNKRSEKEISPEVSNENKILSKGFDLKTSFRPNMKKKK
>NZ_CP013334.1|WP_029491353.1|1008967_1009726_-|hypothetical-protein
MKIISRFKDFYDYKVTKYGVDEKLVYTRKTYCEYFHSFTIKENNRISEDNFDKNLKDDIEYFKGPNYHKILIVGEKLLHLFFTENGMYSLFDIKKLEELKEPYKYWYSYKNIKKIIFNDGKEFEIHTAFRHVWNDFFAYNRKKLLSHINILENDILFNEPMLLIEYIGKIDSKIARSNNAIYKIIYNPNLSQMRLYIDEDFIWQSLVEFLSNKRSEKEISPEVSNENKILSKGFDLKTSFRPNMKKKHKGDI
>NZ_CP013334.1|WP_029491352.1|1009722_1010496_-|hypothetical-protein
MKIISKFKDFYDYKVTKYGVDEKLVYTRKTYCEYYETNFISIYTSSDDRILEENFNKNLKEEVEYFKRNNCHKILILGEKLIHLFFTENGVYTHFDIKNPEDIKKKYGYYSYYTEVREITFNDEKKFDIYSSFKYVWDELFSYDRKRFLPRVNISKDDILFNEPMILIECLGEIFNKKNSSDRIFIYKFTYNPILSKLGLYLDEDFIWQSLVEFLSNKRSEKEISPEVSNENKILSKGFDLKTSFRPNMKKKHKGDR
>NZ_CP013334.1|WP_029491351.1|1010492_1011251_-|hypothetical-protein
MKIISKFKDFYDYKVAKYGVDEKLVYTRKTYCEYFESFVIDVYTASDDRISEENFNKNLKENFEYFKGINFHKILILGEKLIHLFFTENGVYTHFDAKKLDVSKGTYQSYYSKEITFNDGRNFEITTDFGYAWDKLFSYDRKKLFSSMRIDKSDIIFNEPILLIEYFGKSYNKNLKYHRPLYKFTYNPNLSQMGVYIDADFVWQSLVEFLSNKRSEKEISPEVSNENKILSKGFDLKTSFRPNMKKKHKGDI
>NZ_CP013334.1|WP_005900196.1|1011275_1011926_-|precorrin-8X-methylmutase
MSYIKVPGDIEKRSFEIIEEELGDKVKKFSESEMLIVKRIVHTSADFEYADLIEFQNNAIESGLKALEKGCKIYCDTNMIVNGLSKPALAKYNCSAYCLVSDKEVIEEAKKEGLTRSIVGMRKAGKDPETKVFILGNAPTALYQLKEMIENGEIEKPALVIGVPVGFVGAAESKEEFKKLGIPYITINGRKGGSTIGVAILHGIIYQIYKREGFHV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013334_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013334_4

1066534-1066773

Orphan

Consensus_repeat	Method
CCAACTAATTCTCCATTTTTATAA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP013334_4

>merge|NZ_CP013334|4|1066534-1066773|CRISPRCasFinder
CCAACTAATTCTCCATTTTTATAAACTGCTTTTGATCTTAAACTTCCATCTTCATTGAAATTAAATGATTCTCCATCTAATTCTCCATTTTTATAACTTTCTTGGATATATACCTGTCCATTCTCATAGTACTCTGTCGCAGGTCCATCTAAATTACCACTTTTATAATACGTCTCACTTTTTATTTGCCCATTTTCATAATATTCTTTTATTAATCCATCTAATTCATCATCTTTATAA

>NZ_CP013334|4|4|1066534-1066773|CRISPRCasFinder
CCAACTAATTCTCCATTTTTATAA	ACTGCTTTTGATCTTAAACTTCCATCTTCATTGAAATTAAATGATTCT
CCATCTAATTCTCCATTTTTATAA	CTTTCTTGGATATATACCTGTCCATTCTCATAGTACTCTGTCGCAGGT
CCATCTAAATTACCACTTTTATAA	TACGTCTCACTTTTTATTTGCCCATTTTCATAATATTCTTTTATTAAT
CCATCTAATTCATCATCTTTATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013334.1\|WP_029491306.1\|1076489_1077728_-\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
NZ_CP013334.1\|WP_029491308.1\|1073997_1074753_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP013334.1\|WP_029491309.1\|1072576_1073647_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236329
NZ_CP013334.1\|WP_029494535.1\|1062441_1063683_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP013334.1\|WP_029491318.1\|1058070_1058769_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491319.1\|1055457_1058070_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|225955
NZ_CP013334.1\|WP_029491311.1\|1070245_1071703_+\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP013334.1\|WP_005915224.1\|1054488_1054959_-\|DUF1456-family-protein	unknown	unknown	gnl\|CDD\|227144
NZ_CP013334.1\|WP_005915239.1\|1064266_1064905_+\|cyclodeaminase/cyclohydrolase-family-protein	unknown	unknown	gnl\|CDD\|225939
NZ_CP013334.1\|WP_005915233.1\|1061394_1062360_+\|glutamate-formimidoyltransferase	unknown	unknown	gnl\|CDD\|226169
NZ_CP013334.1\|WP_005900496.1\|1073666_1073996_+\|DUF1904-domain-containing-protein	unknown	unknown	gnl\|CDD\|370190
NZ_CP013334.1\|WP_029491314.1\|1067172_1067691_-\|toxin-antitoxin-system-YwqK-family-antitoxin	unknown	unknown	gnl\|CDD\|225405
NZ_CP013334.1\|WP_029491313.1\|1067703_1069020_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236364
NZ_CP013334.1\|WP_005915236.1\|1063698_1064244_+\|NADAR-family-protein	unknown	unknown	gnl\|CDD\|378035
NZ_CP013334.1\|WP_029491316.1\|1065159_1066017_-\|phosphatidylinositol-4-phosphate-5-kinase	unknown	unknown	gnl\|CDD\|225405
NZ_CP013334.1\|WP_029491310.1\|1071690_1072575_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP013334.1\|WP_029491307.1\|1074782_1076483_-\|YgiQ-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|274847
NZ_CP013334.1\|WP_029491317.1\|1058784_1060620_-\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|225100
NZ_CP013334.1\|WP_029491312.1\|1069019_1070150_-\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP013334.1\|WP_005915231.1\|1060696_1060966_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|197670

Protein	Function_ID	Function_description	E-value
NZ_CP013334.1\|WP_029491306.1\|1076489_1077728_-\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
NZ_CP013334.1\|WP_029491308.1\|1073997_1074753_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.72566e-09
NZ_CP013334.1\|WP_029491309.1\|1072576_1073647_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|236329	PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed.	0
NZ_CP013334.1\|WP_029494535.1\|1062441_1063683_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP013334.1\|WP_005915239.1\|1064266_1064905_+\|cyclodeaminase/cyclohydrolase-family-protein	gnl\|CDD\|225939	COG3404, COG3404, Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism].	2.81119e-86
NZ_CP013334.1\|WP_029491319.1\|1055457_1058070_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|225955	COG3421, COG3421, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP013334.1\|WP_029491311.1\|1070245_1071703_+\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP013334.1\|WP_005915224.1\|1054488_1054959_-\|DUF1456-family-protein	gnl\|CDD\|227144	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown].	6.1423e-76
NZ_CP013334.1\|WP_005915233.1\|1061394_1062360_+\|glutamate-formimidoyltransferase	gnl\|CDD\|226169	COG3643, COG3643, Glutamate formiminotransferase [Amino acid transport and metabolism].	0
NZ_CP013334.1\|WP_005900496.1\|1073666_1073996_+\|DUF1904-domain-containing-protein	gnl\|CDD\|370190	pfam08921, DUF1904, Domain of unknown function (DUF1904). This domain is found in a set of hypothetical bacterial proteins.	2.64098e-48
NZ_CP013334.1\|WP_029491314.1\|1067172_1067691_-\|toxin-antitoxin-system-YwqK-family-antitoxin	gnl\|CDD\|225405	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown].	2.53176e-24
NZ_CP013334.1\|WP_029491313.1\|1067703_1069020_-\|aspartate-kinase	gnl\|CDD\|236364	PRK09034, PRK09034, aspartate kinase; Reviewed.	0
NZ_CP013334.1\|WP_005915236.1\|1063698_1064244_+\|NADAR-family-protein	gnl\|CDD\|378035	pfam08719, DUF1768, Domain of unknown function (DUF1768). This is a domain of unknown function. It is alpha helical in structure. The GO annotation for this protein suggests it is involved in nematode larval development and has a positive regulation on growth rate.	1.22996e-82
NZ_CP013334.1\|WP_029491316.1\|1065159_1066017_-\|phosphatidylinositol-4-phosphate-5-kinase	gnl\|CDD\|225405	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown].	5.89272e-30
NZ_CP013334.1\|WP_029491310.1\|1071690_1072575_+\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	9.67406e-100
NZ_CP013334.1\|WP_029491307.1\|1074782_1076483_-\|YgiQ-family-radical-SAM-protein	gnl\|CDD\|274847	TIGR03904, putative_radical_SAM_protein_YgiQ, uncharacterized radical SAM protein YgiQ. Members of this family are fairly widespread uncharacterized radical SAM family proteins, many of which are designated YgiQ. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP013334.1\|WP_029491317.1\|1058784_1060620_-\|site-specific-DNA-methyltransferase	gnl\|CDD\|225100	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair].	4.06014e-82
NZ_CP013334.1\|WP_029491312.1\|1069019_1070150_-\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	8.36109e-98
NZ_CP013334.1\|WP_005915231.1\|1060696_1060966_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	0.000672124

>NZ_CP013334.1|WP_029491316.1|1065159_1066017_-|phosphatidylinositol-4-phosphate-5-kinase
MKKNYIWLILVIFIFLGKFFWRTTEKEMNILDLDQDEKTGLIYIKNSKKLFTGVGKTYYESGKLESILHFKDGVLEGNGITYYESGKINSTFNYTKGNINGIAKSYYESGKIRTEKNFVDGKLNGSSKGYYENDRIAYEESYLNGKLNGSSKFYYENGNLKSELFYKNDMLDGIVIEYLENGNKTSISNYKNGKLEGEKLSYYKNGNLYIEANYTNDELDGDIKVYKKNGDLDYIAPYKNGKPLTAKKLKASDDMVDEISQDLREILGDDIKITVKEESSLEDEK
>NZ_CP013334.1|WP_005915239.1|1064266_1064905_+|cyclodeaminase/cyclohydrolase-family-protein
MKLVELDVLKFLDVVDSNSPAPGGGSVSALASSLGASLARMVAHLSFGKKNYEALADDVKAKFVANFDELLKIKNELNDLIDRDSEAYNTVMAAYKLPKETDEEKAARSAEIQKSLKYAIQTPYDIVVLSGKAISLLGEILANGNQNAITDIGVGTMLLMVGLEGGILNVKVNLSSIKDTEYVEKITKEIYDIKATAEKEKERIMGIVNAAL
>NZ_CP013334.1|WP_005915236.1|1063698_1064244_+|NADAR-family-protein
MKYNLENLIKDFNSKKKLKFLFFWGHTQNGNEVTKACFSQWYNCKFVVDDITYHTAEQYMMAQKALLFGDNEIFHKIMNSKHPKEYKELGRKIKNFSDSKWNENKYQIVLKGNIAKFSQNEKLKTFLLNTGTRVLVEASPYDKIWGIGLSADQENIENPLTWNGENLLGFALMEVRDLISQ
>NZ_CP013334.1|WP_029494535.1|1062441_1063683_+|imidazolonepropionase
MQADLVLYNIGQLVTSRELDKTKKMDNIEVIENNGYIVIEKDTIVAVGSGEVPKEYLTPATEMVDLTGKLVTPGLIDSHTHLVHGGSRENEFAMKIAGVPYLEILEKGGGILSSLKSTRNASEQELIEKTLKSLRHMLELGVTTVEAKSGYGLNLEDELKQLEVTKILGYLQPVTLVSTFMAAHATPPEYKDNKEAYVQEVIRMLPIVKERNLAEFCDIFCEDKVFSVDESRRILTAAKELGYKLKIHADEIVSLGGVELAAELGATSAEHLMKITDSGINALANSNVIADLLPATSFNLMEHYAPARKMIEAGIQIALSTDYNPGSCPSENLQFVMQIGAAHLKMTPKEVFKAVTLNAAKAIDKQDTIGSIEVGKKADITVFDAPSMAYFLYHFGINHTDSVYKNGKLVFKR
>NZ_CP013334.1|WP_005915233.1|1061394_1062360_+|glutamate-formimidoyltransferase
MAKIVECIPNYSEGKDLDKIERIVAPYKNNPKVKLLSVEPDANYNRTVVTVLGDPEEVKKAVIESIGIATKEIDMNVHKGEHKRMGATDVVPFLPIQEMTTEECNEISKEVAKAVWERFQLPVFLYESTATAPNRVSLPDIRKGEYEGMAEKLKQPEWAPDFGERAPHPTAGVTAIGCRMPLIAFNINLATTDMDVPKEIAKAIRFSSGGFRFIQAGPAEILDKGFVQVTMNIKDYTKNPIYRIMETVKMEAKRWGVKVTGCEIIGATPFASLTDSLKYYLACDGIKDDVDAMSMEKVVELMVKYLGLTDFDVKKVLEANI
>NZ_CP013334.1|WP_005915231.1|1060696_1060966_-|helix-turn-helix-domain-containing-protein
MFNLIDFTNDKYKLLKFLYDNQIEIKNNKYIALSQQEIADSLHFSKNKTNKIMQELKKDNFIDTFNNTKGKYIITDKGNKVIAVIEKKY
>NZ_CP013334.1|WP_029491317.1|1058784_1060620_-|site-specific-DNA-methyltransferase
MNKNIFEIVEEVLKTNLKYVSDDGKLLKAMVYSDVMTMDKELLCLLLSNEKIKERFFKDVNGTLIFDKQKFAWFIDSKEFLPDSYTKYMNKIGLIHNENFISKSNDVVLDFPYKDCILEGGQNKDDEKRKEIFYNEVIANDEINRMLSPKVFTNAKKYTKDGVEENITFDNNDNLIIKGNNLIALASILKRYEGEVKCIYIDPPYNTGSDSFNYNDSFNHSTWLTFMKNRLELARKLLNDRGLIFVQCDDNEQAYLKVLMDEIFGKDMFVGTVVYRKRKSQANLSKDLSTIHEYILIYKKSNLANLKKISTSINTKEYSNPDGDYRGLYKTMPCTNKGGALYTIKTPTGKEIKDEWRFKEERFYELLNDNRIVFPKNGEGKPRYKLFLEEKQIEGVIVNSWWDDLGTNQDANRDLTKLFESNVFSYPKSEDLLRRIIEIATDKNDLILDYHLGSGTTCSVAHKMCRRYIGIEQMDYIETVPVERLKKVIEGEQTGISKMVAWNGGGSFVYCELLEDAATLIDRIRLVDDESINNIKSLIYSDDRIISYILKEELLAIDNNFNSLNLDEKKKVLIKLINKNKLYVNYSDIEDEEMFVKVEDKNFTKSFYEDF
>NZ_CP013334.1|WP_029491318.1|1058070_1058769_-|hypothetical-protein
MWELFKVKLENYNKIKSEAEEYSNLRMDCKNFLKKYNLDFDKFTIVKHDSEIGYIAEKFITNYLKKHTKYGIMQWSDNFDLYKIKSILKSKNVEQNDINLIKEFFYDKYDVKICDGRNQLYIDVKTAKTKKIPDINWNFLYPVIQSNKSKDYCIILVYLVYDDSDILDKMYLIGTIDYNEIVSSNIQPKGTKTIFGTISQTDNYITQLKKYKNIHQFIERYFDYLEDSKGSK
>NZ_CP013334.1|WP_029491319.1|1055457_1058070_-|DEAD/DEAH-box-helicase-family-protein
MNGQFLYEKLNILKEAGITVELPKIIESCLSNKILLREYQKEAFKNFISYFENNNLRKNKQVHTIFHMATGSGKTVIMAGLILYLYTKGYRKFLFFVNQTNVLEKTIDNFTNTLSSKYLFNDVIEYLGNKIKIKKVNNFSVNKLDNDIEIFFTTTQKLHMDLFEVKENAITYDDFENNKVVFISDESHHINSLTKKPTKDEEEAKRSWENSVMNAFYSNKDNIMLEFTATCDLKDKNVLNKYQDKIVFNYPLISFRESGYTKDFQNFATDTDLWTRTLISLVMSEYRKFLFSDLKLNIKPVIMLKSQKINESEIFYTEFFKKIKELTSYEISELENVGIDILKEAIDYFKEKDSTLEILEHSIKNSFTEATSIIMNGSSDNNKENQLLMNSLEDKDNPIRAVFAVDMLNEGWDVLNLFDIVRLYDTRQGSGKAGKVGAYTIKEAQLIGRGARYCPFVVDDEELKFKRKFDGDISNPNRILETMYFHSKNDSRYISELKNALIESGLQAPNPIILEYKLKDEFKNSDFYKKSYVFSNKRLLKGRDQIHSIEPSMRTKTYYYTALSSKGNIVNLIGDDNSSPSNVKTNLKSIKLKDIDYNVLLGAIECFEVLRFDILKEKYPSLKSMREFLTSDEFLGNSNVEITYSGDKVNGKILFLAVKQALEKVESHVMAIKPEYVGSKEFEPKQLKVILKDKKISLGSIIQNGGKGNSQNNCSNEEYRLDLTNENWYVFNDNYGTSEEKLFVKYFKTHIEPILKEKNLEYYVIRNERIPELAIYSFEAGERFEPDFLLFVRKQRSEGSLTYQGYVEPKGNQLLDNDAWKEAFSMHIENEHSVKGLFADDYKIIGFPFFNTDYRMEEFEKSINKWMNML
>NZ_CP013334.1|WP_005915224.1|1054488_1054959_-|DUF1456-family-protein
MTNNDFLRRFRYALNIKDNTMIQIFKKGNITLTREDVIDYLKKDIDEGFKKLTNNDLIAFLDGLIIQKRGKREDGTPAPQIKVTKNNLNNIILRKLRIALSFKSYDMINVFKLGGIEISESELSALFRSEDHKNYKECGDKYVRVFLKGLTEYYRN
>NZ_CP013334.1|WP_029491314.1|1067172_1067691_-|toxin-antitoxin-system-YwqK-family-antitoxin
MKKNFVVYTFIIFILSSINIFAQRVVDSDKLEYNQKTQLYHYADEKEPFTGIAKEYYPSGKIKTESFYANGKLNGKSITYYENGNLKYEENYKNSKLDGLIKTYFEDGTLRTEIYYKNGELDGLAKEYYGNGQVYIQESYKDGELDGESLNFYKDGKLKGRELYKKGKLIKN
>NZ_CP013334.1|WP_029491313.1|1067703_1069020_-|aspartate-kinase
MLKVAKFGGSSVASAEQFKKVKEIVKMDSSRKFVVVSAVGKANKDDNKITDLLYLCYAHIKYNMNCDAVFSIIEKKFCDIAKELNLEFDIKGELAKLKEKLDQKSVSEEYLVSRGEYLTALLMAEYLGYKFIDAKDVIFYNYDNTFDYIKSEKAFEEITKTGENFIIPGFYGSFPNKDVKLMTRGGGDVTGAIVASLANADVYENWTDVSGVLMADPRIIPNPQPIEVINYNELRELSYMGASVLHEEAVFPVALKKIPIQIRNTNKPEDVGTIINNSDEGAFKHVITGIAGKKDFSIITIRKVHMSNEVGLIRKALSVFEDYNVSIEHIPSGVDSFSVVVETKAVKPFVHELMGKLKKVTSAGEVTLTTEISLIATVGLGMKNYKGLSGRLFSAIGKAGINIVVISQTSDEINIIVGVHNSDYERTIRTIYYEFNPQ
>NZ_CP013334.1|WP_029491312.1|1069019_1070150_-|homoserine-dehydrogenase
MKIAILGFGTVGSGVYEIAKTLKNIEVKKVLEKDLSKIDIATDNYDEIINDKEIELVVECMGGLHPAYEFIMKALQNKKSVVSANKAVIAKYLDEFLKAARENNVEFRFEASVGGGIPCLAGIQKVRRVENIDKFYGIFNGTSNFILDNMYRFENEFFTTLKTAQELGYAEADPSADIDGYDVTNKVIISFALAYDGFIKNDFPCFTLRNITKEDILYFKKQGFIAKYIGEATTKANDYEASVMLNLFPINALEGNVLSNYNIVTVQSHTMGEVKFYGQGAGKLPTANAIIQDILDIQEKISFNPISIEKKYTYSSNLFQHKYVIRSNEELKGNFEKVDKDGSNFYHYTNEITQADLLKLVDGKDYLVTKVSEVLA
>NZ_CP013334.1|WP_029491311.1|1070245_1071703_+|threonine-synthase
MKYRSTRDNNIIKDDKIALLQGLSEDGGLFVLENLSDKKINLENLIDKSYTEIAFEVLKLFFSFDENKLKSFIEKAYSKFSTSKVTPLVELKNAHVLELFHGPTSAFKDVALTLLPYLIQLALEGTEQEILILTATSGDTGKAALEGFKDVKQTEIIVFYPKNGVSKVQELQMRTQEGNNTKVCAIEGNFDDAQTAVKNIFLDEDLQKKLGNKKFSSANSINIGRLTPQIVYYIVAYIDLVKNKKINLGNKINFIVPTGNFGDILAGYYAKKLGLPVNKLVCASNENNVLYDFLTTGIYNRNREFLKTISPSMDILISSNLERLLYDLSGSDDKYIKSLMEDLKKNEKYQVNNEILAKLKEQFGSGYASDEETSKIIKKVWEEEKYLLDPHTAVAYKVMLEQNLEGTTVVLSTASPYKFCTSVANAVLNITDEDEFKLMEKLHEFTKVAIPENLKNLNTKEIRHNDVVKKEDMAKYILEAEKCLK
>NZ_CP013334.1|WP_029491310.1|1071690_1072575_+|homoserine-kinase
MFKVRVPMTSANVACGFDTLGIAFQEYSIFDFELSNRLEFVNFEEEFCNEDNLVYIAFKKALNFLNKTVKGVKISLKKQAPIARGLGSSSTCVVAGIYGAYLLTGSEINKNDILKIATEIEGHPDNVAPAIFGNLCASCLVDDEAISVQYDVDDRFNFMALIPNFETKTADARKALPKELPLKDAIFSLSRLGIVLRAFENYDIDTLKKVLADKIHEPYRKKLIYEYEEVRNICESIESYGFFISGSGSTLINILTDENNVELIKEKLKNLKYNWKVLFVKADKEGTTYEERNV
>NZ_CP013334.1|WP_029491309.1|1072576_1073647_+|aspartate-semialdehyde-dehydrogenase
MERTKIAVVGATGMVGQRLLVLLENHPYFEVVKLAASKNSAGKKYGDLMANKWKLDMKMPEYTKDFTVEDAMDVKNVANGVKLIFCAVNLDKQELVALEEAYAKEEVVVVSNNSANRMKADVPMIIPEINAKHLDIVGVQRKRLGTKKGFIVVKPNCSIQSYVPVFAALKEYGIKEASICTYQAISGSGRTFEEWPEMVENIIPYIGGEEEKSEIEPLKIFGHIENGEIKLNDTMKFSAQCIRVPVLDGHLACVSFNLENNPGKEALIEKIKNFKSDITDLPLAPKEFIHYYEENDRPQPLLDRDNEKGMQITVGRLREDNLFDYKFVGLSHNTLRGAAGGAVLTAELIKKLGYLD
>NZ_CP013334.1|WP_005900496.1|1073666_1073996_+|DUF1904-domain-containing-protein
MPHLKIRGIEKNLIVENSKEIIDELTKIIGCDRNWFTIEHQNTEYIFDGKIVDGYTFVELYWFARDEKIKKEVADFLTKFIKKINNNKDCCIIFFTLTGDNYCDNGEFF
>NZ_CP013334.1|WP_029491308.1|1073997_1074753_+|methyltransferase-domain-containing-protein
MDKKLIANWLEEEKNAHIQGWDFSHIHGRYEEENDLPWDYKNIIKQYLKPEYKLLDIDTGGGEFLLTLEHPFKNTSVTENYPPNIEFCKKNLVPLGINLYETDGASLLPFKDNEFDIIINKHGNFNISELFRILKTGGIFITQQVGAENDKELIELLLPKTELSFPDLYLKNISKKFKETGFKILQEQEAFRPIKFYDIGALVWYAHIIEWEFPNFSVNNCLENLFKAQEILEKQGVVEGKIHRFLIVAQK
>NZ_CP013334.1|WP_029491307.1|1074782_1076483_-|YgiQ-family-radical-SAM-protein
MKFLPTTKEEMKNLGWDSIDVLLISGDTYLDTSYNGSALVGKWLVEHGFKVGIIAQPEVDVPDDITRLGEPNLFFAISGGCVDSMVANYTATKKRRQQDDFTPGGENNKRPDRAVLVYSNMVRRFFKGTTKKIVISGIESSLRRITHYDYWTNKLRKPILFDAKADILSYGMGEMSMLQLATALKNGEDWQNIRGLCYLSKEIKEDYLSLPSHSECLADKDKFIEAFHTFYLNCDPITAKGLCQKCDDRYLIQNPPSESYSEEIMDKIYAMEFARDVHPYYKKMGAVRALDTIKYSVTTHRGCYGECNFCAIAIHQGRTIMSRSQSSIVEEVKNIAETPKFHGNISDVGGPTANMYGLECKKKLKLGACPDRRCLYPKKCPHLQVNHNNQVELLKKLKKIPNIKKIFIASGIRYDMILDDNKCGQMYLKEIIKDHISGQMKIAPEHTEDKILGLMGKDGKSCLNEFKNQFYKINNELGKKQFLTYYLIAAHPGCKDKDMMDLKKYASQELRVNPEQVQIFTPTPSTYSTLMYYTEKDPFTNQKLFVEKDNGKKQKQKDIVTEKRRK
>NZ_CP013334.1|WP_029491306.1|1076489_1077728_-|peptidase-T
MDKKKYATLKERFLRYVKFNTRSDEASETIPSTTSQIEFAKMLKKELEELGLSNVFINKACFVNATLPSNIDKKVPTVGFIAHMDTADFNAEGINPQIIDNYDGKDIVLNKEKNIVLKVEEFPNLKNYISKTLITTDGTTLLGADDKSGIVEIIEAVKYLKEHPEIKHGDIKMAFGPDEEIGRGADYFDVKEFAADYAYTMDGGPVGELEYESFNAAQARFKIKGVSVHPGTAKGKMINASLIASEIIEMFPKDEVPEKTEGYEGFYYLVEVKSSCEAGELVYILRDHDKAKFLAKKEFVKELVKKVNERYGKEVVELELKDEYYNMGEIIKDHMYVVDIAKQAMENLGIKPLIKAIRGGTDGSKISFMGLPTPNIFAGGENFHGKYEFVALESMEKATDVIVEIVKLNAER

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Crispr_ID: NZ_CP013334_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013334_5

1300103-1301449

TypeIII

Consensus_repeat	Method
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	CRISPRCasFinder
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATT	CRT
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	PILER-CR

17 spacers

cas2,cas1,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

The CRISPR arrays of NZ_CP013334_5

>merge|NZ_CP013334|5|1300103-1301449|CRISPRCasFinder,CRT,PILER-CR
AAAAGGAACTCCTATCGGAGTTATATTCTTTCTTATTAATGTATAGTTTAAGATATCTAAAATAAAATTGTTTCCGTCTCCTATCGGAGTTATATTCTCTCTTATTCAAAAAGAAAGCAGTTCAAGAATTTGTTTCTAAATTACCGTTTCCGTCTCCTATCGGAGTTATATTCTCTCTTATGTATTAAATAAAAATGATACTATCAACGGAGTAGGTAAAGGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATAATTTAAAGTTAAATGGTTTTTAAAAGCCGTGTGGTACTGGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATAGGAAGAACAGCCTCTAATGAGAGAATTTTCTTTAGATAGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATTTTACACTCACGTAATGAAAGACAAAAAATTAGAAATATTGGGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATTCACTAGAAGATATAATGTTAGAATCTTATTCTTCAGTTGGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATTATATGGTGATAATCGTACAATGGTTAGTACACAAGTTTGTGAGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATTATATGGTGATAATCGTACAATGGTTAGTACACAAGTTTGTGAGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATTAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGTTTCATAGGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATTAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAGGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATTAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAGGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATTAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAGGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATTAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAGGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATTAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAGGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATTAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAGGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATTTAGAAATAGCTTTAGCAAATTTAGAAAAACTTTATAGTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATC

>NZ_CP013334|5|5|1300103-1301448|CRISPRCasFinder
AAAAGGAACTCCTATCGGAGTTATATTCTTTCTTAT	TAATGTATAGTTTAAGATATCTAAAATAAAATT
GTTTCCGTCTCCTATCGGAGTTATATTCTCTCTTAT	TCAAAAAGAAAGCAGTTCAAGAATTTGTTTCTAAATTACC
GTTTCCGTCTCCTATCGGAGTTATATTCTCTCTTAT	GTATTAAATAAAAATGATACTATCAACGGAGTAGGTAAAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	AATTTAAAGTTAAATGGTTTTTAAAAGCCGTGTGGTACTG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	AGGAAGAACAGCCTCTAATGAGAGAATTTTCTTTAGATA
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TTTACACTCACGTAATGAAAGACAAAAAATTAGAAATATTGG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TCACTAGAAGATATAATGTTAGAATCTTATTCTTCAGTTG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TATATGGTGATAATCGTACAATGGTTAGTACACAAGTTTGTGA
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TATATGGTGATAATCGTACAATGGTTAGTACACAAGTTTGTGA
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGTTTCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TTAGAAATAGCTTTAGCAAATTTAGAAAAACTTTATA
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT

>NZ_CP013334|5|2|1300103-1301449|CRT
AAAAGGAACTCCTATCGGAGTTATATTCTTTCTTATT	AATGTATAGTTTAAGATATCTAAAATAAAATT
GTTTCCGTCTCCTATCGGAGTTATATTCTCTCTTATT	CAAAAAGAAAGCAGTTCAAGAATTTGTTTCTAAATTACC
GTTTCCGTCTCCTATCGGAGTTATATTCTCTCTTATG	TATTAAATAAAAATGATACTATCAACGGAGTAGGTAAAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATA	ATTTAAAGTTAAATGGTTTTTAAAAGCCGTGTGGTACTG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATA	GGAAGAACAGCCTCTAATGAGAGAATTTTCTTTAGATA
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATT	TTACACTCACGTAATGAAAGACAAAAAATTAGAAATATTGG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATT	CACTAGAAGATATAATGTTAGAATCTTATTCTTCAGTTG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATT	ATATGGTGATAATCGTACAATGGTTAGTACACAAGTTTGTGA
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATT	ATATGGTGATAATCGTACAATGGTTAGTACACAAGTTTGTGA
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATT	AGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGTTTCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATT	AGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATT	AGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATT	AGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATT	AGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATT	AGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATT	AGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATT	TAGAAATAGCTTTAGCAAATTTAGAAAAACTTTATA
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTATC

>NZ_CP013334|5|2|1300172-1301217|PILER-CR
GTTTCCGTCTCCTATCGGAGTTATATTCTCTCTTAT	TCAAAAAGAAAGCAGTTCAAGAATTTGTTTCTAAATTACC
GTTTCCGTCTCCTATCGGAGTTATATTCTCTCTTAT	GTATTAAATAAAAATGATACTATCAACGGAGTAGGTAAAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	AATTTAAAGTTAAATGGTTTTTAAAAGCCGTGTGGTACTG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	AGGAAGAACAGCCTCTAATGAGAGAATTTTCTTTAGATA
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TTTACACTCACGTAATGAAAGACAAAAAATTAGAAATATTGG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TCACTAGAAGATATAATGTTAGAATCTTATTCTTCAGTTG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TATATGGTGATAATCGTACAATGGTTAGTACACAAGTTTGTGA
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TATATGGTGATAATCGTACAATGGTTAGTACACAAGTTTGTGA
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGTTTCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT	TAGCCAAAATGCTATCTGAAGGCTATGGGTGTGAGGTGCATAG
GTTTCCGTCTCCTATCGGAGTTATATTCTCACTTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013334.1\|WP_029491187.1\|1306195_1307200_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|273866
NZ_CP013334.1\|WP_029491193.1\|1299478_1299946_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380350
NZ_CP013334.1\|WP_029491194.1\|1299045_1299375_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491185.1\|1307943_1308312_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NZ_CP013334.1\|WP_029491184.1\|1308315_1310847_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP013334.1\|WP_029491195.1\|1297638_1299000_+\|glutamate:sodium-symporter	unknown	unknown	gnl\|CDD\|223857
NZ_CP013334.1\|WP_029491188.1\|1305029_1306199_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|187793
NZ_CP013334.1\|WP_029491192.1\|1301586_1301910_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP013334.1\|WP_008799798.1\|1290927_1291224_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_058118842.1\|1293263_1293989_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491374.1\|1291889_1293260_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491189.1\|1304323_1305046_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	gnl\|CDD\|273848
NZ_CP013334.1\|WP_029491186.1\|1307199_1307907_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274212
NZ_CP013334.1\|WP_029491191.1\|1301915_1302923_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP013334.1\|WP_029491375.1\|1291239_1291893_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491197.1\|1295040_1296240_-\|HTH-domain-containing-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491190.1\|1302936_1304331_-\|CRISPR-associated-protein	csm6	pfam09659_csm6_CAS-III-A	gnl\|CDD\|312974
NZ_CP013334.1\|WP_029491196.1\|1296418_1297603_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349941
NZ_CP013334.1\|WP_005915516.1\|1311051_1312077_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP013334.1\|WP_029491198.1\|1294371_1294992_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013334.1\|WP_029491187.1\|1306195_1307200_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	8.55265e-32
NZ_CP013334.1\|WP_029491193.1\|1299478_1299946_-\|cupin-domain-containing-protein	gnl\|CDD\|380350	cd02221, cupin_TM1287-like, Thermotoga maritima TM1287 decarboxylase, cupin domain. This family includes bacterial proteins homologous to TM1287 decarboxylase, a Thermotoga maritima manganese-containing cupin thought to catalyze the conversion of oxalate to formate and carbon dioxide, due to its similarity to oxalate decarboxylase (OXDC) from Bacillus subtilis. TM1287 shows a cupin fold with a conserved "jelly roll-like" beta-barrel fold and forms a homodimer.	1.71004e-36
NZ_CP013334.1\|WP_029491184.1\|1308315_1310847_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
NZ_CP013334.1\|WP_029491195.1\|1297638_1299000_+\|glutamate:sodium-symporter	gnl\|CDD\|223857	COG0786, GltS, Na+/glutamate symporter [Amino acid transport and metabolism].	4.38852e-27
NZ_CP013334.1\|WP_029491188.1\|1305029_1306199_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.59467e-10
NZ_CP013334.1\|WP_029491185.1\|1307943_1308312_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.36745e-11
NZ_CP013334.1\|WP_029491186.1\|1307199_1307907_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|274212	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3. Members of this CRISPR-associated (cas) gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm3, for CRISPR/cas Subtype Mtube, protein 3.	3.86557e-77
NZ_CP013334.1\|WP_029491192.1\|1301586_1301910_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.78553e-17
NZ_CP013334.1\|WP_029491191.1\|1301915_1302923_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	6.53176e-115
NZ_CP013334.1\|WP_029491189.1\|1304323_1305046_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.96797e-06
NZ_CP013334.1\|WP_029491190.1\|1302936_1304331_-\|CRISPR-associated-protein	gnl\|CDD\|312974	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6). Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	8.9767e-28
NZ_CP013334.1\|WP_029491196.1\|1296418_1297603_+\|amidohydrolase	gnl\|CDD\|349941	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). This family includes Staphylococcus aureus amidohydrolase, SACOL0085, which contains two manganese ions in the active site, and forms a homotetramer with variations in interdomain orientation which possibly plays a role in the regulation of catalytic activity.	0
NZ_CP013334.1\|WP_005915516.1\|1311051_1312077_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0

>NZ_CP013334.1|WP_029491193.1|1299478_1299946_-|cupin-domain-containing-protein
MKKLLFLTLFVGICITGVASTKEKNPILMKQVFKKEELITLDKENVAGGKGTLKGKFAFTRDMATEDEAIKEIGWMTLNKGESVGVHPHKNNEDTYIIISGEGIFTDGSGKETVVKAGDVTIARPNQSHGLRNEKDEPLVFLDIIAQNHALKAEK
>NZ_CP013334.1|WP_029491194.1|1299045_1299375_+|hypothetical-protein
MSNLDFTLICIVKFFSKKRKTPPNLSNSNYYPHLVIKGDTEYLGVCFIDGEEVVFDREIIASALPLYEGVDYSGLTEGTEFMIMEGGNKVGEGVIDEIFQHIPAKEFKK
>NZ_CP013334.1|WP_029491195.1|1297638_1299000_+|glutamate:sodium-symporter
MTSKIFMDLLNSLGLLGLFLILGTFLRAKIKFFQTTFIPASVIGGFLLLILGPICFNVIKIPEEWLKIFSLTPGILIVPIVASVPLGLKSSSEKKSMKNILPLAFIGIAIAMLQFGFGFSAQYIFPNYDFYKTFGWELGIGFVGGHGTAGLLGNMLQSANLDFWEIAQGVATTTATFGLVGGILIGMLLINIASRKNFTAILKKPGDIPESFKIGFVKDIENQPKLGRETTLTSSVDTLAFHAAIIFGVCLISSQLQNLIKEYKIPILDKISIWAYAMIIMFIVWKLFNKFKIDFLIDSNTKSRISGSLTEFAVTAAIASLPIKAVFSYLIPILLIVIIGFIVTTLFLFYMCKFFTKDYWFEHMIATFGMATGVFLTGILLLRICDPDFKSPVLANYSLSYTITSVVYFVFLNVILTLLLTKGLFFGMSFTFIVGILFTLAAIISSKILLKDR
>NZ_CP013334.1|WP_029491196.1|1296418_1297603_+|amidohydrolase
MDFKEIEKMIDKYIDEIIDFRRDIHSHPELSGNEKRTSEKVIEKLNKLPVEIIKNVNGYGVIANLKGNSNKKTILLRGDMDALPINEINDLPFISKNKNIMHACGHDMHTSILLGTSFVLSSFKDKLNGNVKFMFQPSEEASPIGGSKGMIAEGLLENPKVDEAYALHVFGIPTGSVAIKPGVATSRSDRIDIEIFGKSSHASIPSEGRDAIVAAGNIITSIQSIISRNMPPNQTAVITIGKMEGGSRYNVLADYVKLEGTVRTFSTENADMIKERLQKIVENIASAYGCSAKLNYQNGYDFVYNDPDLSEAAIKSLNEILGRENVLVQSNPLPAGEDFSFITKKVPSVFMWLGTESDFNKGKCTLHSPEFIADETSLKIGIKTLCKLVFDRLN
>NZ_CP013334.1|WP_029491197.1|1295040_1296240_-|HTH-domain-containing-protein
MIKLAILTPRNSYENIKKCLKDIECEIKYIFYDNLYDLESLYLKNAQEYDGIITSGPIGYEIIKNSVELFTPLYHFDISKGDLYKYLFNILKENPKIDFSRVYIDFISPEKKEYWFQDIFKKEEEPIFYQINFSNKNLYETLKSNYINLKKENKIDMVLTRISNMVKFLKNEKISFDFLFPSEENIKNTVLEVIKDIKILKSEKKQIIFGKLLLDEISIDIEEEIHSISKNCIVKILGKNIEIMMIYEDFINSNIALNLKKKLKEKFYSGWGKGNNINEARYNAEKSYKKNVDLNSEVIYLVSTNSEIILSEIDAEKKKNIEIIEKLKELNITKQNSKKLIELFKSKEKVSCASLANYMDISERTANRLLLKLEENNLAISDLVKINRGRPKKLYKFSF
>NZ_CP013334.1|WP_029491198.1|1294371_1294992_+|hypothetical-protein
MKKIFILLIVLLGILVIGCGKKWDYQVTKKESIQIGNDITFYLLTLKDKENGNEIEPLQITKEGFDKYNVEDKLTKEELDSIKISEDSLVNSDLTLKGNYCIVENTSSTDLKFIPENSEFSILNIGKQEDVTPTIPTMILIDKEHKLFYVIILKNQWDAEEFEYTINKDDLKNIEARHMATGNYDENDLSSIENLKNDIHFVEEEK
>NZ_CP013334.1|WP_058118842.1|1293263_1293989_-|hypothetical-protein
MEKEKKLYEALDLGKDLDNVVPRQAIGKYPNEILEPIFSILPLFYEEDRKDSILLTVEDMINFLFFTDKFFLKNIININNTHLYYIQILRNDTFKITIQRENMDKFLKEVNKLKYVVVKKEKETYTEDKKLSFGATGLLKFLLENEELKNIETHFDFSRILSNASHIRKEKIETTQKYLKELEKNNYYHLFDIIDRKQIEKGIEYQVVTVSNYVISAKEAKKYLGLSDEKIVSIYPMGEVK
>NZ_CP013334.1|WP_029491374.1|1291889_1293260_-|hypothetical-protein
MEIKMKIDSKSFVLNTLSQDASWITNKKIFFTLGHQLTQILVYLIDQYKYFEANNALRQDGSFYISNIDLQVYNTMNESQIQTLKKRGIEEGIFKISLEGIPVKSYYYLNFDKIAEIGATDKTNNELALEYFKKTTGVDIELQVNNEEDILNLNKLSYKELRFYCKRNNITYTGKHKTKNSLIELILEKQCPELLKADFFTVDDISSTSGQKNIHCGISVDEKISTSGQKNIHCEEIVSSEIQWTENRPLVEEISAHNQEQINQEQNTCHVHEKNKKDKKIENLFHELGINFTDTNEASCLLILDKFEGNKILLEKYLISIYNQLKKLTNIKNLPALFSKKLKEIDYSLINKIKKENKNNIEKTLEEQKKIKDEERSIENTNNMDKIIDNFLSLDKEIQENVVNLAEQNYLKENSVINIEMLKAIKKNTYRTYLKMIYFKLLEIIKKNNIKVGETA
>NZ_CP013334.1|WP_029491375.1|1291239_1291893_-|hypothetical-protein
MKYTLYIGTNKYSLSTEDDILKLSPGNFKYQHKILVGNKDILRSVQVAYRKLFKKSIDKYNKNNPKKEIKSYFCKINESQKQALATGILIKINEKNYKNLDEDKIIELFLNQVKVIKKLLKNFYIVSAALYFEKSLTFRIVGIPYVKDKENELEVRVSKSNCFRREKVEELRLHLQIQANRDFLKFFVNKTKVITADKKKIDIRQLKLFKTYRENRV
>NZ_CP013334.1|WP_008799798.1|1290927_1291224_-|hypothetical-protein
MKKKQEDKFFDEYIQKRKNSCFYNELSSESLLITKIWDFNKTILDKWADVNLLIAINEAKTNRKMKKGLKNIANNLREIADKLDKAVEEKDVDIINEE
>NZ_CP013334.1|WP_029491192.1|1301586_1301910_-|CRISPR-associated-endonuclease-Cas2
MDNWDFLDEDFEKEVFEDNFTVIIIYDIISNKRRTQLSKLLSAFGFRIQKSAFECLLTREKYKLLIEKIDRYAKPEDLIRIYRLNQNVVTQIYGEKLEIENEMYYFF
>NZ_CP013334.1|WP_029491191.1|1301915_1302923_-|CRISPR-associated-endonuclease-Cas1
MSNLYIYEQGIVLRYKENRLLITYTNGDYKSIPIENIDNVVIFGGIQLSTSCMHNLLAKGIHVTFLSKNGSYFGRLESTSNINIDRQREQFRRGDDKEFCLEIAKKFIKGKATNQRTILIRANKDLKSGILSSIITSMFGIIKDINDSKTIEELMGVEGYLAKLYFNALNHIIDKKYSFKTRTKRPPKDPFNAIISFGYTLLHYEIFTTLVTKGLNPYAAFLHSDRHKHPALCSDLMEEWRAILVDSLAIALLNNSKIIYEDFDFDEKSGGVFLNKKACEKFVEQFEKRLRQEVSYITEVPYKMSFRRIIEYQVMLLIKAIEANDANIYKSVLIR
>NZ_CP013334.1|WP_029491190.1|1302936_1304331_-|CRISPR-associated-protein
MSKKILLTFAGNTDPTRGEHDGPIIHICRYYKPDNIYLILTKEMEERDEEPHNIYERAIKENLKNYNPEIIRIKTGIKDAHHFDIYFSWIYETFEIIKKENKDAEIYLNMTSGTSQMTTNLLMYYIDSLDLNLIPIQVETYKKQSNQSEENNKTVDKNYDVEAEAICNLDNEEKTRTYRIVEPDLKKYSRILTKNQIEKLLEQYKYEAISELLKRNIFDKNLELNTLVNFAIERTNLKGLDCNKKLNSLNNKDYNKLYYFTKDKNITRIPDWYQIVDFFSLANIKQKTEDISTYTLMLEPIIVKIYLSILKDLMGKNLDELFKRDSNGYKIELRRLENGLKEMIKEDLNKDSLKDNVYISAQILVSTIKYYLKNNINLANYINIEYFNNLAETLAKMKTVRNTLAHELKSISREDFNEESKTTVEQINSKILEFFNKFYTSLGYKKEMVEIYDNINKEIVKLLK
>NZ_CP013334.1|WP_029491189.1|1304323_1305046_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MLAQINIELEANGLSTNMGSLFHGYLMENIDSAYADYFHYNTTNPFTSCIFKDMKTDKFFWRITTFNQKAYDMLMTCFSNNIPETIYLKNKDLEINVKSFSIQKKSYDNLFLECTERKRIRLISPTSFKSNGVTHIFPNISTLISGVIEKINQHSDSAELADKKIIDELLEKVYIKDYNLRTKIFHLESIKIKGFIGTMDLAIKGEDTTLANILNFLILMSEYTGLGIKTSLGMGGVKVE
>NZ_CP013334.1|WP_029491188.1|1305029_1306199_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MSNIIKYKMKLEVLTPLHIGGADYKSKLDKKEYVFDKDKGTLTLIDSEKFISFLIKKNLFDDYIFYIQKNLNLKKHEQDKNIKLIDFLKSRDIYKNIEEFRKKAPIKIDPEIEEMNDIKLILRNLQGKPYIPGSSIKGAIINFLLVNYIINHRDKFKIERNKILEIAKKTNNDNDIKKAKNDIKRIVNEIEKSIIYGDNKELEKSKRFGISVSDTYSYSNTRTYFYRDIDEKRDKSKEEKEQAMPVYREYIMANSIFDFDVTLDIDLMEKSKFKIKNISNLTEAIENTSNYLINDILKDENSPQIENLVLGANTGFLQKTIIYSLFEKEEERLEVIKKLLHLKKGDKIKDHLKDKFSPRVLNRIKINGKNHLTGLVKITKVEEKNVGTN
>NZ_CP013334.1|WP_029491187.1|1306195_1307200_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MSYLLYKLRFPNGIHIGTASGNTLEETMISVYSDTFYSALYNEYMKIYNNDELYKISKSGDFLVSDLLPFKEKEDISTDFYLPKPFISIQRDEKEKNDEEVVDRKKVKATNFIPADKLEEYFSFLKTGKNFPEIDDNFGRKQLYTKIKVSLENEDTQLYNIEIFKFNKQSGLYFLVKLPEDEKWEGIFENILESLSLTGIGGKKNSGFGQFIFEDPMFFDGDDFSSIESESDAYINKALYSDEEKFLSLSSYSPKMEEIEKIKESENYYQLIKRSGFVNSSLYSEQAEKRKQVYMLSSGSVLSFKPEGKMLDLNLHGKHSIYRMGKPIVLGVKI
>NZ_CP013334.1|WP_029491186.1|1307199_1307907_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MYTLKGKLLIKGTIKLITGLHIGTSGDFSAIGAVDTIVIRDSVTNKPMIPGSSLKGKMRYLLSRTKYNSSLELVDIKKEDDCIKRLFGSSEPITISRLQFQDILLSDKSIEDFKEFEFDLPYTEIKYENTIDRTKGVANPRQLERVPAGSEFDFKVVYNVEKIEDFKEDMKNILLMMDVLEDDYLGGHGTRGYGRIKFKNLSLELKTYTEENKKELTTIEEEINNFRKELESKVE
>NZ_CP013334.1|WP_029491185.1|1307943_1308312_-|type-III-A-CRISPR-associated-protein-Csm2
MNNLNVQEKIEKYQEDKKNRVTTTQLRLLLSNAVIIKNKIQVETRAKKGDEISEKLENEIKYLLVKHIYQCGREANVKRFDNEFHISGKIKGIGKSAKKFNEFYRYLEEIVAYMKYYESDNK
>NZ_CP013334.1|WP_029491184.1|1308315_1310847_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MDEKLICLQLGALLHDIGKIVRRAGLDSKEHSEAGSNYLKNNNLLDDKYKYVYDMIEYHHAKYLSSADLKEDSLAYIVYEADNIASGIDRVKYENEKIRGNEMDSLNSIFNVIKVEKNNLKKTFKLFDFDKNGFNMPTSNNIKLANSDYKKIIDYIKDNLNSFKENINPEKLAIVLEACCSYFPSSSYVDAPDVSYYDHVKLTAAVSACFYLYDIENNIKDFKKEYFLNIDRNKKKFLLVSGEFSGIQNFIYTISSKMAMKSLRGRSFYLELFAEHIIDEILSILELSRINLLYSGGSHFYLLLPNTEKTKEILDSYKEKINSFILEKMGTTIYFEMVYTETSAEELGNGLSEKIKKENRVGELFRKTSNKVSKAKLSKYSLGQLKELFDENSSINKIHSYTKECKICKKAEDEKILENNARDFGDEDGIELCDSCKGYINLGKDISKLYHTNDEFIIEENCEKNKNTLTFPKYQEGYVNILIKNKDYILKNIDKMHRYYAINSNYVGDKLCKNIWIGNYNIIAKDENENLIEFKNLVKKSKGIERLAVFRADVDNLGTLFQSGFEDKTSKEPYKNVTLSKSVVLSRYLSDFFKRKINLILEKKEAAKDSNEIFKKYCDIICENNSNPRDIVIVYSGGDDVFAIGTWNDIIEFSIDLRTAFKEFTNDKITLSAGIGFFSKNYPIHQMAEKTGNLESLAKANEDNSGKIIKNSVALFGEIDEKLNHIYTWDIFIDKVLREKYKFIKSITILKEEDKGKYKDRIVIGKSKWYKIMDLIINRLTKDDNKLDIARFAYVLGRINFTSENKDNFYEFKKNLLLWLKDKEEAKQLLTAINILIYQERGE
>NZ_CP013334.1|WP_005915516.1|1311051_1312077_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MIILGIESSCDETSIAVIKDGKEILSNNISSQIEIHKEYGGVVPEIASRQHIKNIATVLEESLEEAKITLDDVDYIAVTYAPGLIGALLVGISFAKGLSYAKNIPIIPVHHIKGHMYANFLEHDVELPCISLVVSGGHTNIIYIDENHNFINIGETLDDAVGESCDKVARVLGLGYPGGPVIDKMYYKGDRDFLKITKPKVSRFDFSFSGIKTAIINFDNNMKMKNQEYKKEDLAASFLGTVVDILCDKTLDAAVEKNVKTIMLAGGVAANSLLRSQLTEKAAEKGIKVIYPSMKLCTDNAAMIAEAAYYKLKNAKNEKDCFAGLDLNGVASLMVSDEKVI

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Crispr_ID: NZ_CP013334_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013334_6

1640220-1640426

Orphan

Consensus_repeat	Method
CCATAAATTCCTGCTGAATTATCATCTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013334_6

>merge|NZ_CP013334|6|1640220-1640426|PILER-CR
CATAAATTCCTGCTGAACCAGATTTTCCTGCATTTTCAACTTTTACTAAACCTGTATTATTTAAAGTTTTATCAGCACTAGCAGTATTTGTTAGTAAACCATAAATTCCTGCTGATTTTTCATCTTTTACATATATACCTTTTGTTCCTGTTCCACTATTTGTTACATCCGAGTCTTTTCCATAAATTCCTGCTGACTTATCTTTTT

>NZ_CP013334|6|3|1640220-1640426|PILER-CR
CATAAATTCCTGCTGAACCAGATTTTCCTGCATTT	TCAACTTTTACTAAACCTGTATTATTTAAAGTTTTATCAGCACTAGCAGTATTTGTTAGTAAACCATAAATTCCTGCTGA
TTTTTCATCTTTTACATATATACCTTTTGTTCCTG	TTCCACTATTTGTTACATCCGAGTCTTTTCCATAAATTCCTGCTGAC
TTATCTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013334.1\|WP_005919731.1\|1620392_1621130_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP013334.1\|WP_029490752.1\|1650909_1652292_-\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|223844
NZ_CP013334.1\|WP_029490768.1\|1616079_1617819_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013334.1\|WP_029490762.1\|1628454_1629702_-\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|379536
NZ_CP013334.1\|WP_029490749.1\|1654667_1655753_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NZ_CP013334.1\|WP_029490763.1\|1626106_1627981_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029490765.1\|1622276_1624148_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|182066
NZ_CP013334.1\|WP_029490761.1\|1629766_1630285_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|376885
NZ_CP013334.1\|WP_029490754.1\|1649189_1650053_-\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
NZ_CP013334.1\|WP_005898205.1\|1619705_1619963_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|223305
NZ_CP013334.1\|WP_029490751.1\|1652296_1653361_-\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|340818
NZ_CP013334.1\|WP_029490764.1\|1624239_1625778_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP013334.1\|WP_029490767.1\|1617830_1619627_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013334.1\|WP_029490766.1\|1621357_1622287_+\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|274804
NZ_CP013334.1\|WP_029494696.1\|1653369_1654668_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|223842
NZ_CP013334.1\|WP_029490756.1\|1647120_1648470_-\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|223918
NZ_CP013334.1\|WP_029490758.1\|1644377_1645796_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225532
NZ_CP013334.1\|WP_029490757.1\|1646007_1647096_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_CP013334.1\|WP_029490753.1\|1650067_1650913_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|223882
NZ_CP013334.1\|WP_029490755.1\|1648466_1649177_-\|cell-division-protein-FtsQ/DivIB	unknown	unknown	gnl\|CDD\|224505

Protein	Function_ID	Function_description	E-value
NZ_CP013334.1\|WP_005919731.1\|1620392_1621130_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.54667e-70
NZ_CP013334.1\|WP_029490768.1\|1616079_1617819_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.54656e-132
NZ_CP013334.1\|WP_029490762.1\|1628454_1629702_-\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|379536	pfam14281, PDDEXK_4, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	1.5646e-28
NZ_CP013334.1\|WP_029490749.1\|1654667_1655753_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	6.17207e-144
NZ_CP013334.1\|WP_029490752.1\|1650909_1652292_-\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|223844	COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane].	0
NZ_CP013334.1\|WP_029490765.1\|1622276_1624148_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|182066	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional.	9.27977e-135
NZ_CP013334.1\|WP_029490761.1\|1629766_1630285_-\|Fic-family-protein	gnl\|CDD\|376885	pfam02661, Fic, Fic/DOC family. This family consists of the Fic (filamentation induced by cAMP) protein and doc (death on curing). The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family. Doc induces a reversible growth arrest of E. coli cells by targetting the protein synthesis machinery. Doc hosts the C-terminal domain of its antitoxin partner Phd (prevents host death) through fold complementation, a domain that is intrinsically disordered in solution but that folds into an alpha-helix on binding to Doc.This domain forms complexes with Phd antitoxins containing pfam02604.	7.77344e-07
NZ_CP013334.1\|WP_029490754.1\|1649189_1650053_-\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	1.25468e-111
NZ_CP013334.1\|WP_005898205.1\|1619705_1619963_-\|50S-ribosomal-protein-L28	gnl\|CDD\|223305	COG0227, RpmB, Ribosomal protein L28 [Translation, ribosomal structure and biogenesis].	2.13512e-20
NZ_CP013334.1\|WP_029490751.1\|1652296_1653361_-\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|340818	cd03785, GT28_MurG, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. MurG (EC 2.4.1.227) is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	4.70826e-115
NZ_CP013334.1\|WP_029490764.1\|1624239_1625778_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP013334.1\|WP_029490767.1\|1617830_1619627_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.03429e-162
NZ_CP013334.1\|WP_029490766.1\|1621357_1622287_+\|1-phosphofructokinase	gnl\|CDD\|274804	TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).	9.66319e-140
NZ_CP013334.1\|WP_029494696.1\|1653369_1654668_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|223842	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].	2.18994e-155
NZ_CP013334.1\|WP_029490756.1\|1647120_1648470_-\|cell-division-protein-FtsA	gnl\|CDD\|223918	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning].	2.79078e-79
NZ_CP013334.1\|WP_029490758.1\|1644377_1645796_-\|membrane-protein	gnl\|CDD\|225532	COG2985, COG2985, Predicted permease [General function prediction only].	5.78856e-128
NZ_CP013334.1\|WP_029490757.1\|1646007_1647096_-\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	1.25593e-166
NZ_CP013334.1\|WP_029490753.1\|1650067_1650913_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|223882	COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane].	2.45756e-115
NZ_CP013334.1\|WP_029490755.1\|1648466_1649177_-\|cell-division-protein-FtsQ/DivIB	gnl\|CDD\|224505	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane].	5.97076e-13

>NZ_CP013334.1|WP_029490761.1|1629766_1630285_-|Fic-family-protein
MLNNEKNFSIIQEYSKALELLDNYDHQVVTKPKGLKKVIYQLTYEECRELIASMSFGSSSIIFGREKSEGALKGIVDSIYQSAFGEDAYPTVEEKAANLLYFIVKDHPFIDGCKRIAASIFIYFLNQNNLLFRNGEKIISDSSLVAITLLLAESKPEEKEMMVKVVMNFLGW
>NZ_CP013334.1|WP_029490762.1|1628454_1629702_-|PD-(D/E)XK-nuclease-family-protein
MENYKIFFEKLNLINKKYNLINSQKEDFNIFSILRNEYDEVNLHSKFIVELLKNKNYGKKFIEIFLEKLEIQVFNHENVNIFSEYSKGIKGRIDILLEFSKDKEKKVIIIENKIYAEDQIGQLNRYYYSMINKNYSNDELEIVYLTLDGNEPTEESTKGLTKEIKEKIIIISYKENIIEWLNDCIKEVAEVPIIRETLIQYRSLLKKITGKEDKKMIKEIEKLVLSNNEYLKMIYKIDYTLLREIKIDLQFKFWEKLEEKLNEIAIKKKMKLENRLEYPNLHYLIDLIKSYPKKKFFGLMYFIKEIENRGKLYLRIEVEDRVYYGFRIINNNGKSNFNMIDNYLEKEFKELNFKRTDWWLGFKYISNFENINEFIDFKYFNESLAILLNNDEKLEKLVKHISEDIENTLDYLKLS
>NZ_CP013334.1|WP_029490763.1|1626106_1627981_+|hypothetical-protein
MLDNNTARIVASFSTIKSMIDAKEYKSPYMILAEFIQYIIVEKKLYSFTSSDIKKSLVELFGFELPEAVIKSSIKKIEFIERDSGVYKTDTSKIMIDDNFKKIKNNSENEFVGIFEQLKLYIEERNTDKKIEIDLLTNEFISFLIDDNNGSNIGKYIGLISEFILKNEKNSNVQKTLTAIREGSIIYIGLNYNINDVGSVNKPLTLYLATEVLFNLYGLNGEIHKQLAQDFFSQVRDINIKSNQIKLRYFLDVKKEIEDFFSTAILIIDGKRNLNTEAVAMKNILNGCDTASDINVKKADFFTKLKSGYGILLDEKTDYYEKSEYQYNLEEVSDPSQEINMKLISNINKLRKGKIFENNLDAEYLIVTNSSNMIKASKQQVDSLKIDSKSDYICDFALSVDKITNILWYQLGKLFGKNEFPKNVNTALKARTLLSSHIVQNVCKLYSETNKKYSDGEISSEQLIARIAAIHKKPLLPEDLNAETIEDIMDFSPENIMKYEEEVAKNKKELEQYKEKLKKIEEINKIKEIERNKVESELEHYKDKERRNNEKKIFRKKCILYIIKIIFILIIISAIVYGCSRYFKQDILNTISAIITIFFSIPTCWYIFKKDFKNSFDKKIKKNK
>NZ_CP013334.1|WP_029490764.1|1624239_1625778_+|glutamine-hydrolyzing-GMP-synthase
MKKGGIVILDFGSQYNQLIARRVREMGVYAEVVPFHEDVDKILAREPKGIILSGGPASVYAEGAPSLDIKLFQKNIPILGLCYGMQLITHLHGGKVARADKQEFGKAELELDDKNHILYKDIPNKTTVWMSHGDHVTEMAPDFKIIAHTDSSIAAIENSDKNIYAFQYHPEVTHSQHGFDMLKNFVFGIAKAEKNWSMENYIESTVKNIKERVGNKQVILGLSGGVDSSVAAALINKAIGRQLTCIFVDTGLLRKDEAKQVMEVYAKNFDMNIKCVNAEERFLTKLAGVTDPETKRKIIGKEFVEVFNEEAKKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPEDLKFELLEPLRELFKDEVRKVGRELGIPDYMVDRHPFPGPGLGIRILGEVTKEKADILREADAIFIEELRKADLYNKVSQAFVVLLPVKSVGVMGDERTYEYTAVLRSANTIDFMTATWSHLPYEFLEKVSNRILNEVKGINRLTYDISSKPPATIEWE
>NZ_CP013334.1|WP_029490765.1|1622276_1624148_+|PTS-sugar-transporter-subunit-IIA
MKIKDLLKKDLTIMDLKASTKIEAIDEMVAKLKEKNIISDEAVFKDLILKREERSSTGLGEGIAMPHAKTSVVNTPSVLFARSNKGIDYDALDDEPVYIFFMIAASEGAHDLHIETLAKLSKMLLNDDFTQGLKTCGSPDEVYALVDKYSEKPQETVKEEVKEVQNTNKKRILAVTACPTGIAHTYMAEAALKEAGEKLGVDVKVETNGADGIKNNLTSNDINEAVGIIVAADKKVETARFNDRKVIVTSTADAIKNAETLIKKVLNNEAPVFKAEASDKSEEDTQENDSIGRIIYKSIMNGVSNMLPFVIGGGILLAISFIVERFMGQNQLFKLLFDVGAGAFHFLIPVLAGFIAMSIADKPGFMPGAVAGYMASQGAGFLGGLIGGFIAGYSVIFLKKMTKNMSKQFDGMKSMVIYPIFSLLITGVLMYFLIGPIFTKVNLIVANWLNNMGTANAVLLGAILGGMMSVDMGGPINKAAYAFSIGVFTDTGNGAFMAAVMAGGMVPPLAIALAMTLFKNNFDEKEKQSTISNFILGLSFITEGAIPFAAKEPVKVIGSCIVGAAIAGGLTQFWSVSAPAPHGGIFVIPAMPSVHSAIFFIVSIAIGAIVSGVIFGVLRGKKK
>NZ_CP013334.1|WP_029490766.1|1621357_1622287_+|1-phosphofructokinase
MIYSVTLNPSIDFIVRVKDFQLGETNRAYEDNFFAGGKGIMVSKLLKNVKTDCVNLGFLGGFTGAFIEQNLKKLNILSDFVTVNENTRVNVKLKTETETEINCQGPKISENEKEEFLEKIRKIKSNDFVILSGSVPSNLGNDFYITIIEILNKNGVKFTLDSSGETFSKSLKYKPFLIKPNKDELKEYAKNEFKNNQEIVDYVRKNLVDKAEHVIISLGGEGALYIDKNFSLFAHPLRVKENVVNTVGAGDSVVAGFVNYILKHNDVEKAFRFAVACGTATSFSEDIGELDFIEEIYSKLVIEKENYEN
>NZ_CP013334.1|WP_005919731.1|1620392_1621130_+|DeoR/GlpR-transcriptional-regulator
MLFEDRISLILKLTEQNGSIENSKIIKDLKISEATLRRDLAYLEKEGKIKRVRGGAILKKVARKEIAIKEKNFNKDSKKKIAKLAAQFISDGDYIYLDAGTTTYEIIDYIKGKDIKVVTNGIIHLEKLIANDIETYLIGGRIKKSTLAIVGVKALRDLSEFRFDKAFIGINGINENGYSTHDIEEALIKKQAIDNSNKAFILADSSKFDIVYFANVAKLEEATIITDKKEVNKNIIKHTQIINTY
>NZ_CP013334.1|WP_005898205.1|1619705_1619963_-|50S-ribosomal-protein-L28
MQRCEITGTGLISGNQISHSHRLTRRVWKPNLQVTTLVVNGSPIKVKVCARTLKTLKGASEVEVMRILKANIATLSERLLKHLNK
>NZ_CP013334.1|WP_029490767.1|1617830_1619627_+|ABC-transporter-ATP-binding-protein
MSKKKNQNEDSIKNFKKAVSNFLSLLGERKLPFLISVVANIISTILVVAIPWTSAVAIDDIVKILNDNTIIDKWSAVFSFLIKPVSLLGIIAVAIFALSYLQEYISAILGEEVAQSLRVKLSRKFTKLPINFFDTNQVGDILSKLTTDIEKVAEVIGSSFTRFVYSFLIMILVIIMLFTINTKLTLIVLSILLISIVVTYYVSKLTQKIFSQDVKSLSELSSLTEEALTGNLIVQSFNKQEDIIASIDESIEKQYAAAKTLEFTIFSIYPSIRFITQIAFVTSAVISAILVINGHLTLGLAQAFLQYITQISEPVTTSAYIINSLQNALVSVERVYDILELPEETELSEDSHLLDNTKGQIVFENVSFGYSKDKLLMKNVNFTAKAEQMVAIVGPTGAGKTTLINLLMRFYDVNGGRILFDGVDISKVTRKELRANFGMVLQDTWLFKGTIAENIAYGKPDATREEIIEAAKLAKCDSFIRKLPQGYDTIITSENGMVSQGEQQLLTIARTILPNPKVMILDEATSSIDTKTEKDIQAVISQLMKGRTSFVIAHRLSTIRNADLILVMKDGDIVEQGSHDELMKVNGIYANLYNTQFS
>NZ_CP013334.1|WP_029490768.1|1616079_1617819_+|ABC-transporter-ATP-binding-protein
MKILRAYIKENIGILSLGAIFLTLNTFATLAIPFQISNIINLGIMKKDIDMVYSTSIKMIIILIVGTATGIIANHFVALFATNFTKKNRKLLVRNLESLTVDQVNDFGVASLVTRMGNDNNNAQRLIVAFFQMILPSPIMAIISIFMTIKLSPTLALIPLFTILIFALAIVLTLFKSLPYILKVQKKLDRMTLVLRERFIGAKIIRAFDNSKKERNKFNDIAQEYTDNYIIINKKFALLSPMAFALMSVVITLIIFFGAMKVLNNTLEIGSITAIVEYSLTTIAALIMSSMVLVQMPKAVVSIERIEEILNVTSEIKDKEGLKDNSYYEDILKQNPISLTFDNVSFRYKGAEKQILKNISFSIKAGERFAIVGATGSGKSTIAKVLLRLNDIESGKILINGINALDLPLNCLRNQISYTPQKAYLFSGKIKDNFRFTNKDMTDEEMIKVAKVAQSYDFIDSLPDKFDSFVAQGGTNFSGGQKQRLSIARALSKEANIYLFDDSFSALDYATDAKLRKELKTFLKDKITIIIAQRLNTIADADKIIVLKDSEITGMGTHQELLESNQEYIELAKSQGILE
>NZ_CP013334.1|WP_029490758.1|1644377_1645796_-|membrane-protein
MHFDLIGFIFNSLVLLFFTMTLGNLFGDIKFRKFNFGITGTLFIGLLVGYFLTKYAVTIPEGSKYLPKAQNILKGNIIDNSIMNLSLLIFIVGTGLLAAKDMKYAITKFGKQFVIIAIFIPFVGAAFSYGFSQVLNNMSPYQITGTYTGALTSSAGLAAATESSESESKQSATNFQNLDEKTKTKILAIINNAKERDAKLKNEAIPEKMTLENTTTLSAEDTEIYVTEAKAGVGVGHSIGYPFGVLFLILGINFIPKIFRFDVEKEKEKYFAQKKIDLSNDKDAGKNTIKEVKMDFVGFSIAAFLGYFLGSIKISMGPLGNFSLGSIGGAIIVALILGFIGKIGPVTFRMDSVVLGKMRTYFLSIFLAGTGLNYGFRVVEAVTGDGIMIAVVSALVAILSVLFGFLIGHYVFHINWTLLSGAITGGMTSAPGLGAAIDALDCDEPAISYGATQPLATLCMVIFSIIIHKLPI
>NZ_CP013334.1|WP_029490757.1|1646007_1647096_-|cell-division-protein-FtsZ
MTDGMRDLVKIKVIGVGGGGGNAINDMIYLGVTGVEYIAANTDRQDLEKSLADVKLQIGEKLTKGQGAGALPEIGRMAAEEDIEKIQELLKGTDMLFITAGMGGGTGTGAAPVIAKIAKELDVLTVAVVTKPFSFEGEKRKNNADAGIELLRQNIDSLVVIPNNKLFDLPDKKITLQNAFKEANNILRIGIKAVVELVLGQGFINLDFADIRSVLKDSDIAVLGFGEGEGENRAIKAAEKALESPLLEKSIRGADKILINLRASEDVGLSESQVVTDVIRDAAGKNPEDVMFGLTIVPEFTDRIEITIIANNFKDGVVESTNETLIKKDSTKATQEGRKIEKEAEDVYGDIDIPPFMRNNKR
>NZ_CP013334.1|WP_029490756.1|1647120_1648470_-|cell-division-protein-FtsA
MKDDIIRKVALDIGNNRIKLLVGEMSSDFQRMAVTKYINVKSKGIKRSVIENSEQLAEAIGEAIRRAESIEEPITKVSLALGGPRISSVTTSVNLSFPEKEIEKTDMDDLLKEAKNQIFSGKEGEYRILYKEIYNKKIDRTRIAKNPVGMVCKELQADVHLVYVEESYVKKFTDIINKVGLDVDRIYLNPYASAKGTLDGEAWKLGVIYVDIGYASTSVTIVKKEKVLYARVIPLGETHYITDLMSRFNISESDSAEIIKKLKNKEFEADSTIRCGTKKILLKDVKDIISARTEDIVQYIKDTIEISSFNEIFQKGIVLSGGTIEIEGVYEQIANSFNYKVRRIEPIPLKGLSNPSYSDAVVIGIFLEDMEKEYRNYIESIRENEIELEKERQEEDLTSLNNKINNKQNIEKMDRKEEIDDFLNEIEKEEPKEEAGKIKKMFKWVKELF
>NZ_CP013334.1|WP_029490755.1|1648466_1649177_-|cell-division-protein-FtsQ/DivIB
MGIRLLFLSGIIYLIYMLPQNFFRLNYFNINQINITDNSKMLQNELTELSKKIYNKSAIYVDSNKIKEFIEKDVRVESATVEKNSLGEITIDVKEKDLVYYAVIGKNIYLVDKEGRIFAYLNEKEVEGVPIIIANNEEEIKEIADFLNEISDLAIFKRISQMYKVKDKEYIIILADGVKIKTNRIKDSNDEINKEKENKRYVVAEQLYFNMSKERKIDYIDLRFNDYIIKYLGDGK
>NZ_CP013334.1|WP_029490754.1|1649189_1650053_-|D-alanine--D-alanine-ligase
MKIAVFMGGTSSEKEISLKSGAAVLESLQKQGYDAYGVILDEKNQVSAFVDNDYDLAYLVLHGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSIGIRTPKAYKTVETIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLARPIIEDYIVGEELTVGVLNGEALGVLKIIPQADILYDYNSKYANGGSIHEFPAKIENKSYKEAMKIAEKIHSEFEMKGISRSDFILSEGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVKMTVETFLK
>NZ_CP013334.1|WP_029490753.1|1650067_1650913_-|UDP-N-acetylmuramate-dehydrogenase
MKIFTNHEMKNYSNMRVGGKAKKLIILENKEDIIEVFNDKENTNIFFLGNGTNVLFTDDYMDKTFVCTKKLNKIEDLGNNLVKVETGANLKDLTDFMRDKNYTGIESLFGIPGSIGGLVYMNGGAFGTEIFDKIVSIEVFDEKHQIKEIKKEDLKVAYRKTEIQDKNWLVLSATFKFDNGFDAARVKEIKELRESKHPLDKPSLGSTFKNPEGDFAARLISECGLKGTIIGNAQIAEKHPNFVLNLGNATFKDITDILTLVKKSVFDKFGIKLEEEIIIVR
>NZ_CP013334.1|WP_029490752.1|1650909_1652292_-|UDP-N-acetylmuramate--L-alanine-ligase
MEKIYFIGINGIGMSGLAKIMKCKGYDVKGADICTNYVTEELLSMGITVYNEHNEENVKGADYVIASTAIKETNPEYSYAKNNGITMLKRGELLAKLLNRETGIAVAGTHGKTTTSSMLSAVMLSKDPTIVVGGILPEIKSNAKPGKSEYFIAEADESDNSFLFMNPKYSVITNIDADHLDVHGNLDNIKKSFIKFISHTQKESIICMDCENLREIVTRLPEGKSVTTYSIKDENANIFAKNIRIVDRKTIFNLYINKELIGEFSLNIPGDHNIQNSLPVIYLALKFGVSKEEIQEALNKFKGSKRRYDVLLDKNLENGYGNKTKRVRIVDDYAHHPTEIKATLKAIKSIDNSRLVAIFQPHRYSRVHFLLDEFKDAFESVDKIILLPIYAAGEKNEFNITSEILKEHINHSNIEVMTEWKDIKRYVSRVKKDSTYIFMGAGDISTLAHEIAEELEGMSE
>NZ_CP013334.1|WP_029490751.1|1652296_1653361_-|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MKKVMLTTGGTGGHIYPALAVADKLEHKGVETVFIGSTERMEKDLVPESGHRFIGLDISVPRSFKNIRKYLKAIKSAYKIIKEEKPDAIIGFGNYISVPTIIAGMLLRKKIYLQEQNVNIGSANKMFYKIAKMTFLAFDKTYDDIPIKSQNKFKVTGNPLRKEIDGLRYATEREKLGIKPGEKVLLITGGSLGAQEINGMVMKYWEKLCADKNLRIFWATGNNFDQLKKVKKTKKENDRIEPYFNDMLSVMAAADLIVCRAGALTISEIVELEKPAIIIPYGSIKVGQYENAKALKDYNAAYVFTRDELDDAMKKVFEVIRNDEKLKKMRIRLKPLKKPNAAEEIIASLDIWRN
>NZ_CP013334.1|WP_029494696.1|1653369_1654668_-|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MKKAMIYGLGVSGTGAKELLEKEGYELIIVDDKKAMTSEEALKHLDGLEFFIKSPGIPYNNFVKEVQKRGIKVLDEIEIAYNYMIEKGLKTKIIAITGTNGKSTTTAKISDMLNHAGYKAAYAGNIGRSLSEVLLKEKDLDFISLELSSFQLENIENFKPYISMIINMGPDHIERYKSFDEYYNTKFNITKNQTEDLYFIENIDDVEIEKRASQIKAKRISVSKFKKADIFVENDKICHEKNSIIDVDKLSLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELFFNYGKLKFINDSKATNVDSTKFAIQANKNSILICGGYDKGVDLAPLAEMIKENIKEVYLIGVIADKIENELKKIGYEDSKIHKLVNIENSLQDMKKRFTKESDEVILLSPATSSYDQFNSFEHRGKVFKELVLKIFG
>NZ_CP013334.1|WP_029490749.1|1654667_1655753_-|phospho-N-acetylmuramoyl-pentapeptide--transferase
MLYFLAEHFTKLEFLKSIYLRAFLGFVVSFCIVLFAGKPFIKYLKVKKFGEEIRDDGPSSHFSKKGTPTMGGVLIIAAVFLTSISINDLTNTLILLVLLSMLMFAAIGFIDDYRKFTVSKKGLAGKKKLLFQAIIGLIVWAYLYFIGLTGRPMVDLSIINPISAYPYYIGAIGMFILIQIVLMGTSNAVNITDGLDGLAIMPMIICSTILGVIAYFTGHTELSSHLHLFYTVGSGELSVFLSAVTGAGLGFLWYNCYPAQIFMGDTGSLTLGGILGVIAIILKQELMLPILGFIFVLEALSVILQVGSFKLRGKRIFKMAPIHHHFELMGIPESKVTMRFWIGTLIFGIIALGTIKMRGIL

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Crispr_ID: NZ_CP013334_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013334_7

1643110-1643339

Orphan

Consensus_repeat	Method
TGGTGCTCCTGGTGCTGTTGGTG	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP013334_7

>merge|NZ_CP013334|7|1643110-1643339|CRISPRCasFinder
TGGTACTTCTGGTGCACTTGGTGCACTTGGCGCACTTGGTGCACTTGGTGCTTCTGGTGCACTTGGTGCCTTTACTTGAACAGAAACACTTGGTGCCACTGGTGCTGTTGGTGCCACTGGTGCTGTTGGTGCTCCTGGTGCTGTTGGTGCTCCTGGTGCTGTTGGTGCCACTGGTGCATCAGGAGTATCTATTCCAATAGAAATAACTGGTGCTCCTGGTGCTGTCGGTG

>NZ_CP013334|7|6|1643110-1643339|CRISPRCasFinder
TGGTACTTCTGGTGCACTTGGTG	CACTTGGCGCACTTGGTGCACT
TGGTGCTTCTGGTGCACTTGGTG	CCTTTACTTGAACAGAAACACT
TGGTGCCACTGGTGCTGTTGGTG	CCACTGGTGCTGTTGGTGCTCC
TGGTGCTGTTGGTGCTCCTGGTG	CTGTTGGTGCCACTGGTGCATCAGGAGTATCTATTCCAATAGAAATAAC
TGGTGCTCCTGGTGCTGTCGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013334.1\|WP_005919731.1\|1620392_1621130_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP013334.1\|WP_029490752.1\|1650909_1652292_-\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|223844
NZ_CP013334.1\|WP_029490768.1\|1616079_1617819_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013334.1\|WP_029490762.1\|1628454_1629702_-\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|379536
NZ_CP013334.1\|WP_029490749.1\|1654667_1655753_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NZ_CP013334.1\|WP_029490763.1\|1626106_1627981_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029490765.1\|1622276_1624148_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|182066
NZ_CP013334.1\|WP_029490761.1\|1629766_1630285_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|376885
NZ_CP013334.1\|WP_029490754.1\|1649189_1650053_-\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
NZ_CP013334.1\|WP_005898205.1\|1619705_1619963_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|223305
NZ_CP013334.1\|WP_029490751.1\|1652296_1653361_-\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|340818
NZ_CP013334.1\|WP_029490764.1\|1624239_1625778_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP013334.1\|WP_029490767.1\|1617830_1619627_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013334.1\|WP_029490766.1\|1621357_1622287_+\|1-phosphofructokinase	unknown	unknown	gnl\|CDD\|274804
NZ_CP013334.1\|WP_029494696.1\|1653369_1654668_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|223842
NZ_CP013334.1\|WP_029490756.1\|1647120_1648470_-\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|223918
NZ_CP013334.1\|WP_029490758.1\|1644377_1645796_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225532
NZ_CP013334.1\|WP_029490757.1\|1646007_1647096_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_CP013334.1\|WP_029490753.1\|1650067_1650913_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|223882
NZ_CP013334.1\|WP_029490755.1\|1648466_1649177_-\|cell-division-protein-FtsQ/DivIB	unknown	unknown	gnl\|CDD\|224505

Protein	Function_ID	Function_description	E-value
NZ_CP013334.1\|WP_005919731.1\|1620392_1621130_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.54667e-70
NZ_CP013334.1\|WP_029490768.1\|1616079_1617819_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.54656e-132
NZ_CP013334.1\|WP_029490762.1\|1628454_1629702_-\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|379536	pfam14281, PDDEXK_4, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	1.5646e-28
NZ_CP013334.1\|WP_029490749.1\|1654667_1655753_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	6.17207e-144
NZ_CP013334.1\|WP_029490752.1\|1650909_1652292_-\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|223844	COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane].	0
NZ_CP013334.1\|WP_029490765.1\|1622276_1624148_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|182066	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional.	9.27977e-135
NZ_CP013334.1\|WP_029490761.1\|1629766_1630285_-\|Fic-family-protein	gnl\|CDD\|376885	pfam02661, Fic, Fic/DOC family. This family consists of the Fic (filamentation induced by cAMP) protein and doc (death on curing). The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family. Doc induces a reversible growth arrest of E. coli cells by targetting the protein synthesis machinery. Doc hosts the C-terminal domain of its antitoxin partner Phd (prevents host death) through fold complementation, a domain that is intrinsically disordered in solution but that folds into an alpha-helix on binding to Doc.This domain forms complexes with Phd antitoxins containing pfam02604.	7.77344e-07
NZ_CP013334.1\|WP_029490754.1\|1649189_1650053_-\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	1.25468e-111
NZ_CP013334.1\|WP_005898205.1\|1619705_1619963_-\|50S-ribosomal-protein-L28	gnl\|CDD\|223305	COG0227, RpmB, Ribosomal protein L28 [Translation, ribosomal structure and biogenesis].	2.13512e-20
NZ_CP013334.1\|WP_029490751.1\|1652296_1653361_-\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|340818	cd03785, GT28_MurG, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. MurG (EC 2.4.1.227) is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	4.70826e-115
NZ_CP013334.1\|WP_029490764.1\|1624239_1625778_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP013334.1\|WP_029490767.1\|1617830_1619627_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.03429e-162
NZ_CP013334.1\|WP_029490766.1\|1621357_1622287_+\|1-phosphofructokinase	gnl\|CDD\|274804	TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).	9.66319e-140
NZ_CP013334.1\|WP_029494696.1\|1653369_1654668_-\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|223842	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].	2.18994e-155
NZ_CP013334.1\|WP_029490756.1\|1647120_1648470_-\|cell-division-protein-FtsA	gnl\|CDD\|223918	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning].	2.79078e-79
NZ_CP013334.1\|WP_029490758.1\|1644377_1645796_-\|membrane-protein	gnl\|CDD\|225532	COG2985, COG2985, Predicted permease [General function prediction only].	5.78856e-128
NZ_CP013334.1\|WP_029490757.1\|1646007_1647096_-\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	1.25593e-166
NZ_CP013334.1\|WP_029490753.1\|1650067_1650913_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|223882	COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane].	2.45756e-115
NZ_CP013334.1\|WP_029490755.1\|1648466_1649177_-\|cell-division-protein-FtsQ/DivIB	gnl\|CDD\|224505	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane].	5.97076e-13

>NZ_CP013334.1|WP_029490761.1|1629766_1630285_-|Fic-family-protein
MLNNEKNFSIIQEYSKALELLDNYDHQVVTKPKGLKKVIYQLTYEECRELIASMSFGSSSIIFGREKSEGALKGIVDSIYQSAFGEDAYPTVEEKAANLLYFIVKDHPFIDGCKRIAASIFIYFLNQNNLLFRNGEKIISDSSLVAITLLLAESKPEEKEMMVKVVMNFLGW
>NZ_CP013334.1|WP_029490762.1|1628454_1629702_-|PD-(D/E)XK-nuclease-family-protein
MENYKIFFEKLNLINKKYNLINSQKEDFNIFSILRNEYDEVNLHSKFIVELLKNKNYGKKFIEIFLEKLEIQVFNHENVNIFSEYSKGIKGRIDILLEFSKDKEKKVIIIENKIYAEDQIGQLNRYYYSMINKNYSNDELEIVYLTLDGNEPTEESTKGLTKEIKEKIIIISYKENIIEWLNDCIKEVAEVPIIRETLIQYRSLLKKITGKEDKKMIKEIEKLVLSNNEYLKMIYKIDYTLLREIKIDLQFKFWEKLEEKLNEIAIKKKMKLENRLEYPNLHYLIDLIKSYPKKKFFGLMYFIKEIENRGKLYLRIEVEDRVYYGFRIINNNGKSNFNMIDNYLEKEFKELNFKRTDWWLGFKYISNFENINEFIDFKYFNESLAILLNNDEKLEKLVKHISEDIENTLDYLKLS
>NZ_CP013334.1|WP_029490763.1|1626106_1627981_+|hypothetical-protein
MLDNNTARIVASFSTIKSMIDAKEYKSPYMILAEFIQYIIVEKKLYSFTSSDIKKSLVELFGFELPEAVIKSSIKKIEFIERDSGVYKTDTSKIMIDDNFKKIKNNSENEFVGIFEQLKLYIEERNTDKKIEIDLLTNEFISFLIDDNNGSNIGKYIGLISEFILKNEKNSNVQKTLTAIREGSIIYIGLNYNINDVGSVNKPLTLYLATEVLFNLYGLNGEIHKQLAQDFFSQVRDINIKSNQIKLRYFLDVKKEIEDFFSTAILIIDGKRNLNTEAVAMKNILNGCDTASDINVKKADFFTKLKSGYGILLDEKTDYYEKSEYQYNLEEVSDPSQEINMKLISNINKLRKGKIFENNLDAEYLIVTNSSNMIKASKQQVDSLKIDSKSDYICDFALSVDKITNILWYQLGKLFGKNEFPKNVNTALKARTLLSSHIVQNVCKLYSETNKKYSDGEISSEQLIARIAAIHKKPLLPEDLNAETIEDIMDFSPENIMKYEEEVAKNKKELEQYKEKLKKIEEINKIKEIERNKVESELEHYKDKERRNNEKKIFRKKCILYIIKIIFILIIISAIVYGCSRYFKQDILNTISAIITIFFSIPTCWYIFKKDFKNSFDKKIKKNK
>NZ_CP013334.1|WP_029490764.1|1624239_1625778_+|glutamine-hydrolyzing-GMP-synthase
MKKGGIVILDFGSQYNQLIARRVREMGVYAEVVPFHEDVDKILAREPKGIILSGGPASVYAEGAPSLDIKLFQKNIPILGLCYGMQLITHLHGGKVARADKQEFGKAELELDDKNHILYKDIPNKTTVWMSHGDHVTEMAPDFKIIAHTDSSIAAIENSDKNIYAFQYHPEVTHSQHGFDMLKNFVFGIAKAEKNWSMENYIESTVKNIKERVGNKQVILGLSGGVDSSVAAALINKAIGRQLTCIFVDTGLLRKDEAKQVMEVYAKNFDMNIKCVNAEERFLTKLAGVTDPETKRKIIGKEFVEVFNEEAKKIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPEDLKFELLEPLRELFKDEVRKVGRELGIPDYMVDRHPFPGPGLGIRILGEVTKEKADILREADAIFIEELRKADLYNKVSQAFVVLLPVKSVGVMGDERTYEYTAVLRSANTIDFMTATWSHLPYEFLEKVSNRILNEVKGINRLTYDISSKPPATIEWE
>NZ_CP013334.1|WP_029490765.1|1622276_1624148_+|PTS-sugar-transporter-subunit-IIA
MKIKDLLKKDLTIMDLKASTKIEAIDEMVAKLKEKNIISDEAVFKDLILKREERSSTGLGEGIAMPHAKTSVVNTPSVLFARSNKGIDYDALDDEPVYIFFMIAASEGAHDLHIETLAKLSKMLLNDDFTQGLKTCGSPDEVYALVDKYSEKPQETVKEEVKEVQNTNKKRILAVTACPTGIAHTYMAEAALKEAGEKLGVDVKVETNGADGIKNNLTSNDINEAVGIIVAADKKVETARFNDRKVIVTSTADAIKNAETLIKKVLNNEAPVFKAEASDKSEEDTQENDSIGRIIYKSIMNGVSNMLPFVIGGGILLAISFIVERFMGQNQLFKLLFDVGAGAFHFLIPVLAGFIAMSIADKPGFMPGAVAGYMASQGAGFLGGLIGGFIAGYSVIFLKKMTKNMSKQFDGMKSMVIYPIFSLLITGVLMYFLIGPIFTKVNLIVANWLNNMGTANAVLLGAILGGMMSVDMGGPINKAAYAFSIGVFTDTGNGAFMAAVMAGGMVPPLAIALAMTLFKNNFDEKEKQSTISNFILGLSFITEGAIPFAAKEPVKVIGSCIVGAAIAGGLTQFWSVSAPAPHGGIFVIPAMPSVHSAIFFIVSIAIGAIVSGVIFGVLRGKKK
>NZ_CP013334.1|WP_029490766.1|1621357_1622287_+|1-phosphofructokinase
MIYSVTLNPSIDFIVRVKDFQLGETNRAYEDNFFAGGKGIMVSKLLKNVKTDCVNLGFLGGFTGAFIEQNLKKLNILSDFVTVNENTRVNVKLKTETETEINCQGPKISENEKEEFLEKIRKIKSNDFVILSGSVPSNLGNDFYITIIEILNKNGVKFTLDSSGETFSKSLKYKPFLIKPNKDELKEYAKNEFKNNQEIVDYVRKNLVDKAEHVIISLGGEGALYIDKNFSLFAHPLRVKENVVNTVGAGDSVVAGFVNYILKHNDVEKAFRFAVACGTATSFSEDIGELDFIEEIYSKLVIEKENYEN
>NZ_CP013334.1|WP_005919731.1|1620392_1621130_+|DeoR/GlpR-transcriptional-regulator
MLFEDRISLILKLTEQNGSIENSKIIKDLKISEATLRRDLAYLEKEGKIKRVRGGAILKKVARKEIAIKEKNFNKDSKKKIAKLAAQFISDGDYIYLDAGTTTYEIIDYIKGKDIKVVTNGIIHLEKLIANDIETYLIGGRIKKSTLAIVGVKALRDLSEFRFDKAFIGINGINENGYSTHDIEEALIKKQAIDNSNKAFILADSSKFDIVYFANVAKLEEATIITDKKEVNKNIIKHTQIINTY
>NZ_CP013334.1|WP_005898205.1|1619705_1619963_-|50S-ribosomal-protein-L28
MQRCEITGTGLISGNQISHSHRLTRRVWKPNLQVTTLVVNGSPIKVKVCARTLKTLKGASEVEVMRILKANIATLSERLLKHLNK
>NZ_CP013334.1|WP_029490767.1|1617830_1619627_+|ABC-transporter-ATP-binding-protein
MSKKKNQNEDSIKNFKKAVSNFLSLLGERKLPFLISVVANIISTILVVAIPWTSAVAIDDIVKILNDNTIIDKWSAVFSFLIKPVSLLGIIAVAIFALSYLQEYISAILGEEVAQSLRVKLSRKFTKLPINFFDTNQVGDILSKLTTDIEKVAEVIGSSFTRFVYSFLIMILVIIMLFTINTKLTLIVLSILLISIVVTYYVSKLTQKIFSQDVKSLSELSSLTEEALTGNLIVQSFNKQEDIIASIDESIEKQYAAAKTLEFTIFSIYPSIRFITQIAFVTSAVISAILVINGHLTLGLAQAFLQYITQISEPVTTSAYIINSLQNALVSVERVYDILELPEETELSEDSHLLDNTKGQIVFENVSFGYSKDKLLMKNVNFTAKAEQMVAIVGPTGAGKTTLINLLMRFYDVNGGRILFDGVDISKVTRKELRANFGMVLQDTWLFKGTIAENIAYGKPDATREEIIEAAKLAKCDSFIRKLPQGYDTIITSENGMVSQGEQQLLTIARTILPNPKVMILDEATSSIDTKTEKDIQAVISQLMKGRTSFVIAHRLSTIRNADLILVMKDGDIVEQGSHDELMKVNGIYANLYNTQFS
>NZ_CP013334.1|WP_029490768.1|1616079_1617819_+|ABC-transporter-ATP-binding-protein
MKILRAYIKENIGILSLGAIFLTLNTFATLAIPFQISNIINLGIMKKDIDMVYSTSIKMIIILIVGTATGIIANHFVALFATNFTKKNRKLLVRNLESLTVDQVNDFGVASLVTRMGNDNNNAQRLIVAFFQMILPSPIMAIISIFMTIKLSPTLALIPLFTILIFALAIVLTLFKSLPYILKVQKKLDRMTLVLRERFIGAKIIRAFDNSKKERNKFNDIAQEYTDNYIIINKKFALLSPMAFALMSVVITLIIFFGAMKVLNNTLEIGSITAIVEYSLTTIAALIMSSMVLVQMPKAVVSIERIEEILNVTSEIKDKEGLKDNSYYEDILKQNPISLTFDNVSFRYKGAEKQILKNISFSIKAGERFAIVGATGSGKSTIAKVLLRLNDIESGKILINGINALDLPLNCLRNQISYTPQKAYLFSGKIKDNFRFTNKDMTDEEMIKVAKVAQSYDFIDSLPDKFDSFVAQGGTNFSGGQKQRLSIARALSKEANIYLFDDSFSALDYATDAKLRKELKTFLKDKITIIIAQRLNTIADADKIIVLKDSEITGMGTHQELLESNQEYIELAKSQGILE
>NZ_CP013334.1|WP_029490758.1|1644377_1645796_-|membrane-protein
MHFDLIGFIFNSLVLLFFTMTLGNLFGDIKFRKFNFGITGTLFIGLLVGYFLTKYAVTIPEGSKYLPKAQNILKGNIIDNSIMNLSLLIFIVGTGLLAAKDMKYAITKFGKQFVIIAIFIPFVGAAFSYGFSQVLNNMSPYQITGTYTGALTSSAGLAAATESSESESKQSATNFQNLDEKTKTKILAIINNAKERDAKLKNEAIPEKMTLENTTTLSAEDTEIYVTEAKAGVGVGHSIGYPFGVLFLILGINFIPKIFRFDVEKEKEKYFAQKKIDLSNDKDAGKNTIKEVKMDFVGFSIAAFLGYFLGSIKISMGPLGNFSLGSIGGAIIVALILGFIGKIGPVTFRMDSVVLGKMRTYFLSIFLAGTGLNYGFRVVEAVTGDGIMIAVVSALVAILSVLFGFLIGHYVFHINWTLLSGAITGGMTSAPGLGAAIDALDCDEPAISYGATQPLATLCMVIFSIIIHKLPI
>NZ_CP013334.1|WP_029490757.1|1646007_1647096_-|cell-division-protein-FtsZ
MTDGMRDLVKIKVIGVGGGGGNAINDMIYLGVTGVEYIAANTDRQDLEKSLADVKLQIGEKLTKGQGAGALPEIGRMAAEEDIEKIQELLKGTDMLFITAGMGGGTGTGAAPVIAKIAKELDVLTVAVVTKPFSFEGEKRKNNADAGIELLRQNIDSLVVIPNNKLFDLPDKKITLQNAFKEANNILRIGIKAVVELVLGQGFINLDFADIRSVLKDSDIAVLGFGEGEGENRAIKAAEKALESPLLEKSIRGADKILINLRASEDVGLSESQVVTDVIRDAAGKNPEDVMFGLTIVPEFTDRIEITIIANNFKDGVVESTNETLIKKDSTKATQEGRKIEKEAEDVYGDIDIPPFMRNNKR
>NZ_CP013334.1|WP_029490756.1|1647120_1648470_-|cell-division-protein-FtsA
MKDDIIRKVALDIGNNRIKLLVGEMSSDFQRMAVTKYINVKSKGIKRSVIENSEQLAEAIGEAIRRAESIEEPITKVSLALGGPRISSVTTSVNLSFPEKEIEKTDMDDLLKEAKNQIFSGKEGEYRILYKEIYNKKIDRTRIAKNPVGMVCKELQADVHLVYVEESYVKKFTDIINKVGLDVDRIYLNPYASAKGTLDGEAWKLGVIYVDIGYASTSVTIVKKEKVLYARVIPLGETHYITDLMSRFNISESDSAEIIKKLKNKEFEADSTIRCGTKKILLKDVKDIISARTEDIVQYIKDTIEISSFNEIFQKGIVLSGGTIEIEGVYEQIANSFNYKVRRIEPIPLKGLSNPSYSDAVVIGIFLEDMEKEYRNYIESIRENEIELEKERQEEDLTSLNNKINNKQNIEKMDRKEEIDDFLNEIEKEEPKEEAGKIKKMFKWVKELF
>NZ_CP013334.1|WP_029490755.1|1648466_1649177_-|cell-division-protein-FtsQ/DivIB
MGIRLLFLSGIIYLIYMLPQNFFRLNYFNINQINITDNSKMLQNELTELSKKIYNKSAIYVDSNKIKEFIEKDVRVESATVEKNSLGEITIDVKEKDLVYYAVIGKNIYLVDKEGRIFAYLNEKEVEGVPIIIANNEEEIKEIADFLNEISDLAIFKRISQMYKVKDKEYIIILADGVKIKTNRIKDSNDEINKEKENKRYVVAEQLYFNMSKERKIDYIDLRFNDYIIKYLGDGK
>NZ_CP013334.1|WP_029490754.1|1649189_1650053_-|D-alanine--D-alanine-ligase
MKIAVFMGGTSSEKEISLKSGAAVLESLQKQGYDAYGVILDEKNQVSAFVDNDYDLAYLVLHGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSIGIRTPKAYKTVETIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLARPIIEDYIVGEELTVGVLNGEALGVLKIIPQADILYDYNSKYANGGSIHEFPAKIENKSYKEAMKIAEKIHSEFEMKGISRSDFILSEGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVKMTVETFLK
>NZ_CP013334.1|WP_029490753.1|1650067_1650913_-|UDP-N-acetylmuramate-dehydrogenase
MKIFTNHEMKNYSNMRVGGKAKKLIILENKEDIIEVFNDKENTNIFFLGNGTNVLFTDDYMDKTFVCTKKLNKIEDLGNNLVKVETGANLKDLTDFMRDKNYTGIESLFGIPGSIGGLVYMNGGAFGTEIFDKIVSIEVFDEKHQIKEIKKEDLKVAYRKTEIQDKNWLVLSATFKFDNGFDAARVKEIKELRESKHPLDKPSLGSTFKNPEGDFAARLISECGLKGTIIGNAQIAEKHPNFVLNLGNATFKDITDILTLVKKSVFDKFGIKLEEEIIIVR
>NZ_CP013334.1|WP_029490752.1|1650909_1652292_-|UDP-N-acetylmuramate--L-alanine-ligase
MEKIYFIGINGIGMSGLAKIMKCKGYDVKGADICTNYVTEELLSMGITVYNEHNEENVKGADYVIASTAIKETNPEYSYAKNNGITMLKRGELLAKLLNRETGIAVAGTHGKTTTSSMLSAVMLSKDPTIVVGGILPEIKSNAKPGKSEYFIAEADESDNSFLFMNPKYSVITNIDADHLDVHGNLDNIKKSFIKFISHTQKESIICMDCENLREIVTRLPEGKSVTTYSIKDENANIFAKNIRIVDRKTIFNLYINKELIGEFSLNIPGDHNIQNSLPVIYLALKFGVSKEEIQEALNKFKGSKRRYDVLLDKNLENGYGNKTKRVRIVDDYAHHPTEIKATLKAIKSIDNSRLVAIFQPHRYSRVHFLLDEFKDAFESVDKIILLPIYAAGEKNEFNITSEILKEHINHSNIEVMTEWKDIKRYVSRVKKDSTYIFMGAGDISTLAHEIAEELEGMSE
>NZ_CP013334.1|WP_029490751.1|1652296_1653361_-|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MKKVMLTTGGTGGHIYPALAVADKLEHKGVETVFIGSTERMEKDLVPESGHRFIGLDISVPRSFKNIRKYLKAIKSAYKIIKEEKPDAIIGFGNYISVPTIIAGMLLRKKIYLQEQNVNIGSANKMFYKIAKMTFLAFDKTYDDIPIKSQNKFKVTGNPLRKEIDGLRYATEREKLGIKPGEKVLLITGGSLGAQEINGMVMKYWEKLCADKNLRIFWATGNNFDQLKKVKKTKKENDRIEPYFNDMLSVMAAADLIVCRAGALTISEIVELEKPAIIIPYGSIKVGQYENAKALKDYNAAYVFTRDELDDAMKKVFEVIRNDEKLKKMRIRLKPLKKPNAAEEIIASLDIWRN
>NZ_CP013334.1|WP_029494696.1|1653369_1654668_-|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MKKAMIYGLGVSGTGAKELLEKEGYELIIVDDKKAMTSEEALKHLDGLEFFIKSPGIPYNNFVKEVQKRGIKVLDEIEIAYNYMIEKGLKTKIIAITGTNGKSTTTAKISDMLNHAGYKAAYAGNIGRSLSEVLLKEKDLDFISLELSSFQLENIENFKPYISMIINMGPDHIERYKSFDEYYNTKFNITKNQTEDLYFIENIDDVEIEKRASQIKAKRISVSKFKKADIFVENDKICHEKNSIIDVDKLSLKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELFFNYGKLKFINDSKATNVDSTKFAIQANKNSILICGGYDKGVDLAPLAEMIKENIKEVYLIGVIADKIENELKKIGYEDSKIHKLVNIENSLQDMKKRFTKESDEVILLSPATSSYDQFNSFEHRGKVFKELVLKIFG
>NZ_CP013334.1|WP_029490749.1|1654667_1655753_-|phospho-N-acetylmuramoyl-pentapeptide--transferase
MLYFLAEHFTKLEFLKSIYLRAFLGFVVSFCIVLFAGKPFIKYLKVKKFGEEIRDDGPSSHFSKKGTPTMGGVLIIAAVFLTSISINDLTNTLILLVLLSMLMFAAIGFIDDYRKFTVSKKGLAGKKKLLFQAIIGLIVWAYLYFIGLTGRPMVDLSIINPISAYPYYIGAIGMFILIQIVLMGTSNAVNITDGLDGLAIMPMIICSTILGVIAYFTGHTELSSHLHLFYTVGSGELSVFLSAVTGAGLGFLWYNCYPAQIFMGDTGSLTLGGILGVIAIILKQELMLPILGFIFVLEALSVILQVGSFKLRGKRIFKMAPIHHHFELMGIPESKVTMRFWIGTLIFGIIALGTIKMRGIL

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Crispr_ID: NZ_CP013334_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013334_8

1848002-1848196

TypeV

Consensus_repeat	Method
AAGACTGGCGCTCTACCAACTGAGCTA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013334_8

>merge|NZ_CP013334|8|1848002-1848196|PILER-CR
AAGTCGTGTGCTCTACCAACTGAGCTAATGACGCAAATGGGGTGACCGACGGGGATCGAACCCGCGACAACCAGTGCCACAAACTGGCGCTCTACCAACTGAACTACGGTCACCATAATATTTTTTTGGAGCGGGAAACGAGGTTCGAACTCGCGACATTCAGCTTGGAAGGCTGACGCTCTACCAACTGAGCTA

>NZ_CP013334|8|4|1848002-1848196|PILER-CR
AAGTCGTGTGCTCTACCAACTGAGCTA	ATGACGCAAATGGGGTGACCGACGGGGATCGAACCCGCGACAACCAGTGCCA
CAAACTGGCGCTCTACCAACTGAACTA	CGGTCACCATAATATTTTTTTGGAGCGGGAAACGAGGTTCGAACTCGCGACATTCAGCTTGG
AAGGCTGACGCTCTACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013334.1\|WP_005918673.1\|1854731_1854950_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491959.1\|1854961_1856683_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491949.1\|1843570_1843930_-\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212142
NZ_CP013334.1\|WP_029491950.1\|1843939_1845328_-\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238520
NZ_CP013334.1\|WP_029491958.1\|1852708_1854280_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|177094
NZ_CP013334.1\|WP_029491961.1\|1857947_1858898_-\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|366542
NZ_CP013334.1\|WP_005918662.1\|1847136_1847391_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491960.1\|1856866_1857448_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491957.1\|1852203_1852695_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491951.1\|1845458_1845986_-\|macro-domain-containing-protein	unknown	unknown	gnl\|CDD\|394878
NZ_CP013334.1\|WP_029490910.1\|1834447_1835137_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225512
NZ_CP013334.1\|WP_005918680.1\|1857648_1857861_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029491955.1\|1848551_1850954_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP013334.1\|WP_029491953.1\|1846368_1847127_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_005918664.1\|1847427_1847637_-\|bacteriocin-immunity-protein	unknown	unknown	gnl\|CDD\|319897
NZ_CP013334.1\|WP_029490911.1\|1835347_1836985_+\|tryptophanase	unknown	unknown	gnl\|CDD\|225576
NZ_CP013334.1\|WP_029491956.1\|1851060_1852098_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP013334.1\|WP_005918671.1\|1854291_1854732_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029490912.1\|1837110_1838445_+\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NZ_CP013334.1\|WP_029491952.1\|1845978_1846365_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013334.1\|WP_029491961.1\|1857947_1858898_-\|TIM-barrel-protein	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	9.95921e-13
NZ_CP013334.1\|WP_029491951.1\|1845458_1845986_-\|macro-domain-containing-protein	gnl\|CDD\|394878	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. This family includes eukaryotic macrodomain proteins such as human MacroD1 and MacroD2, and bacterial proteins such as Escherichia coli YmdB; these have been shown to be O-acetyl-ADP-ribose (OAADPr) deacetylases that efficiently catalyze the hydrolysis of OAADPr to produce ADP-ribose and free acetate. OAADPr is a sirtuin reaction product generated from the NAD+-dependent protein deacetylation reactions and has been implicated as a signaling molecule. By acting on mono-ADP-ribosylated substrates, OAADPr deacteylases may reverse cellular ADP-ribosylation.	2.90245e-81
NZ_CP013334.1\|WP_029490910.1\|1834447_1835137_-\|PAS-domain-containing-protein	gnl\|CDD\|225512	COG2964, COG2964, Uncharacterized protein conserved in bacteria [Function unknown].	2.21862e-72
NZ_CP013334.1\|WP_029491949.1\|1843570_1843930_-\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|212142	cd11535, NTP-PPase_SsMazG, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in Sulfolobus solfataricus (Ss) and its homologs from archaea and bacteria. This family includes a MazG-like protein from Sulfolobus solfataricus (SsMazG) and its homologs from archaea and bacteria. Although its biological roles remain still unclear, SsMazG shows significant sequence similarity to the NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, SsMazG contains a single MazG-like domain. It is predicted that SsMazG might participate in house-cleaning by preventing incorporation of the oxidation product 2-oxo-(d)ATP (iso-dGTP), a mutagenic derivative of ATP, into DNA.	2.37591e-24
NZ_CP013334.1\|WP_029491955.1\|1848551_1850954_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	3.66618e-23
NZ_CP013334.1\|WP_029491950.1\|1843939_1845328_-\|aminopeptidase-P-family-protein	gnl\|CDD\|238520	cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.	8.33164e-101
NZ_CP013334.1\|WP_029491958.1\|1852708_1854280_-\|AAA-family-ATPase	gnl\|CDD\|177094	CHL00195, ycf46, Ycf46; Provisional.	2.36276e-77
NZ_CP013334.1\|WP_005918664.1\|1847427_1847637_-\|bacteriocin-immunity-protein	gnl\|CDD\|319897	cd16363, Col_Im_like, inhibitory immunity (Im) protein of colicin (Col) deoxyribonuclease (DNase) and pyocins. This family contains inhibitory immunity (Im) proteins that bind to colicin endonucleases (DNases) or pyocins with very high affinity and specificity; this is critical for the neutralization of endogenous DNase catalytic activity and for protection against exogenous DNase bacteriocins. The DNase colicin family (ColE2, ColE7, ColE8 and ColE9) in E. coli, and pyocin family (S1, S2, S3 and AP41) in P. aeruginosa, are potent bacteriocins where the immunity proteins (Ims) protect the colicin/pyocin producing (i.e. colicinogenic) bacteria by binding and inactivating colicin nucleases. The binding affinities between cognate and non-cognate nucleases by Im proteins can vary up to 10 orders of magnitude.	0.00130858
NZ_CP013334.1\|WP_029490911.1\|1835347_1836985_+\|tryptophanase	gnl\|CDD\|225576	COG3033, TnaA, Tryptophanase [Amino acid transport and metabolism].	0
NZ_CP013334.1\|WP_029491956.1\|1851060_1852098_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	3.62724e-08
NZ_CP013334.1\|WP_029490912.1\|1837110_1838445_+\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	9.91087e-137

>NZ_CP013334.1|WP_005918664.1|1847427_1847637_-|bacteriocin-immunity-protein
MLERKELIDLIEQIKNFEGTEEEEDILFKKLQNLVLDPEISDYIYWTDMSSEEIADKVLAYKPIILENK
>NZ_CP013334.1|WP_005918662.1|1847136_1847391_-|hypothetical-protein
MRKFSIHGTEEGNTTSIKLDEIAILADPDTLLKIGEFIIKTAHVMKGYEVDYSHLQDEVSDFDNKNNTDIIIYNQDYDYKSDID
>NZ_CP013334.1|WP_029491953.1|1846368_1847127_-|hypothetical-protein
MSNKENFLRDIPNLKEKVYKNISKDNEDLINFLDIFSQFSKNTNNIKEFIYSNEEISKNFFNLIKLNKNNLEDILDILNCIKENSKNEDLEIYGKELDRGIYEVRWIIEEKKLYQSIFENFEDNILSKNSIVNGEYKEDFLQNQYLINTFANKSWKDINKETIINFLEGLDFYYLSNETYFFIIPICIRYGIEKFEDNEDLEYLIFFLSDQDRVKYANDKIKKLVVSYLELVKKLKFVVFGKEEEKCLEIWR
>NZ_CP013334.1|WP_029491952.1|1845978_1846365_-|hypothetical-protein
MLEIIGKSLNGIVLGTKRNEIGEELLNSSGYFFEFDKKNEIQSEANLIIISVLDRKEFSLNGKIISFQNLSKFIKSEKNIAEQEDDGYSYIFPEYNLLLYVDYIAQSFMQILIYDDSLKDLYERQINV
>NZ_CP013334.1|WP_029491951.1|1845458_1845986_-|macro-domain-containing-protein
MYKDVIKLVSGDITKIPEVEAVVNAANNYLEMGGGVCGAIFRAAGNELIKECKEIGSCKTGEAVITKGYNLPNKYIIHTVGPRYTNGENGEAEKLKSAYYESLKLAKIKGIRKIAFPSISTGIYRFPVDEGAKIALSTAIKFLDENPNTFDLILWVLDEKTYVIYEEKYKKLIEI
>NZ_CP013334.1|WP_029491950.1|1843939_1845328_-|aminopeptidase-P-family-protein
MLSKEIYLNRRKKLKENFKDGLILIMGNNFSPLDCEDNTYPFIQDATFKYYFGIDHNGLIGIIDIDKNEEIIFGNDYTISDIIWMGKQKFLKELALEVGIEKFIEKEELKKYLENRKNIRFTNQYKADNIMYLSSILNINPFKFDDYTSFDLVKAIINQRNIKDNIEIEEIEKAVNITKEMHLSAMRNVKVGMREYELVAEVEKQPRKYNAYYSFQTILSKNGQILHNHNHLNILKDGDLVLLDCGTLSDEGYCGDMTTTFPVSGKFSERQKTIHNIVRDMFDRAKDLVRAGITYKEVHLEACKVLAGNMKKLGLMKGEVEDIVSSGAHALFMPHGLGHMMGMTVHDMENFGEINVGYEEGEKKSTQFGLSSLRLAKKLEVGNVFTIEPGIYFIPELFEKWKNEKLHEEFLNYDEIEKYMDFGGIRMERDILIQEDGTSRILGDKFPRTADEIEEYMEEYRK
>NZ_CP013334.1|WP_029491949.1|1843570_1843930_-|nucleotide-pyrophosphohydrolase
MESIQQELLKKLSNESSINEIQSYIKKVMEVRGFNKEKSSDKILLLVEEVGELAKAIRKNESKLGIDKTKEYNYSSVESEIADVFIVLLSICDILNIDLFKAFLDKEEENIKRIWSVNK
>NZ_CP013334.1|WP_029490912.1|1837110_1838445_+|sodium-dependent-transporter
MSTIEKRDGFTTKWGFILACIGSAVGMGNIWRFPVLVSEMGGMTFLIPYFIFVIFIGSTGVIEEFALGRSAGAGPVGAFGMCTEMKGNRSIGEKIGIIPILGSLALAIGYSCVMGWVFKYAWMSIDGSMYAMQSNMDVIGSTFGQTASAWGANFWIVVALIVSFIIMSMGIASGIEKANKIMMPVLFILFVLLGIYIVFQPGSSGGYKYIFTVNLEGLANPKIWIYAFGQAFFSLSVAGNGSVIYGSYLSKSEDIPNSAKNVAFFDTLAALLAAFVIIPAMAVGGAELSSGGPGLMFIYLINIMNNMAGGRIIEVIFYLCVLFAGVSSIINLYEAPVAFLQEKFKANRITATAIIHIVGCIVAICIQGIVSQWMDVVSIYICPLGALLAAVMFFWIAGKEFAEEAVNMGANKKIGSWFYPAGKYIYCLLALVALIAGALLGGIG
>NZ_CP013334.1|WP_029490911.1|1835347_1836985_+|tryptophanase
MKEYLLNVPVPRSFSYVKRNIPEVTVEQRERTLKATHYNEFAFPAGMLTVDMLSDSGTTAMTDQQWSAMFLGDESYGRNKGYYVLLDAMRDCFERGDNQKKIINLVRTDCQDIEKMMNEMYLCEYEGGLFNGGAAQLERPNAFLMPQGRAAESILFEIVRKILAVREPGKVFTIPSNGHFDTTEGNIKQMGSVPRNLYNKELLYEVPEGGRYEKNPFKGDMDINKLQQLIDAVGVENIPMIYTTVTNNTVCGQAVSMKSIRETSKIAHKYEIPFMLDAARWAENCYFIKMNEEGYRDKSIAEIAKEMFSYCDGFTASLKKDGHANMGGILAFRDKGYFWKKFSDFNEDGSVKTDVGILLKVKQISSYGNDSYGSMSGRDIMALAAGLYECCNFNYLHERVEQCNYLAEGFYKAGVKGVVLPAGGHGVYINMDEFFDGKRGHETFAGEGFSIELIRRYGIRVSELGDYSMEYDLKTPEQQAEVANVVRFAINRSVYSQEHLDYVIAAVKALYEDRESIPNMRIISGHNLPMRHFHAFLEPYPNEEK
>NZ_CP013334.1|WP_029490910.1|1834447_1835137_-|PAS-domain-containing-protein
MKNELLNQYKMLVNFLGKTLGPSFEIVLHEIKGEEVKMIAIANGEISNRTLENSISIETLHILKKKSYHNEESMVNHTVLLKNGKKVRSSSMFIKENQKIIGMLCINFDDSKFHDINCQILRIIHPDMFVKNYLSDVSYNILVDENKGQSDEENSTDNIEVFMEKIFQEVNLKFNYPLERLTKHEREKIVQALYEKGLFNLKDAINFVAQKLSCSPTTIYRYVGKIEKV
>NZ_CP013334.1|WP_029491955.1|1848551_1850954_-|tetratricopeptide-repeat-protein
MKEEILQKIESLYDLDKHEEIIEMIEALPAEQLSAELISELGRAYNNSGQYEKGLEVLKGIEFEEGNSPSWNWRIAYSYYFLDDFINAEKHLLKAIELNPEEEFTYTLLIETYISLSKVEDQNGNYEKAIEYALEAKKYVRDEEGEANADSFLAWLYDRYGHYPEAEEILKNQINKSKNDEWLYSELGFCLAEQGRQEEALENYLKAVELGRDDAWIFTRMGMCYKNMDKKEEALENYLKALELKEDDIFIMSDIAWLYDSIGEFEKGLKYLERLSELGENDVWTNTEYGYCLAKLKRYEEAIVKINRALEIEDDDKDTAYIYSQLGWCKRHLGNYDEAIEAFTQAKKWGRNDAWLLIEIGHCYKGKDDREKALEFYLKAEKLDKNDIYLLSDIAWHYDALNKYEEGLKYIKRAVRLGRDDAWINEEYGSCLGGLGKYKEAIKKYEYALNLDDENKDEAYINSQLGWCHRQAGEYEKAIEYDKKAKELGRNDVWINVEIGMCYAKLEEYEKAIENYLVAYEMDSEDSLTLTELGWVYDAMEKYEDGLQFLLKAEKLGRDDEWLNTEIGVNLGRSGKTEEGIERLQKSLTMIEDDDTEQKIFVNSEIGWLYGRLEEPNPEEAIKYLKVAKELGRDDEWLNSELGFELGYNQDTRKEALEHFERAIELGRNDAWVYEMRGTLLLDLGKYEEALESFRKAYSLNKDGWYLYSIGRCLRRLERYEEAIENLLESRQISLDEEDVVDGEDLELAFCYIGVGDKEKAEEYLKSARESIEEQGTLNDYIQEEINEIEKGILSLTRLS
>NZ_CP013334.1|WP_029491956.1|1851060_1852098_-|tetratricopeptide-repeat-protein
MDEKFWEKINTYGENGEFDKVVREIKKLPEDKLDIELINILGRSYMNLGDYENALDTYLSFIGKSKEDVKDVDIWLYSECGWLCNEVGDYEQGLKYLLEAEKLGRDDEWLNTEIGQCLGRLERPEEGLERLKKSLKLIEKEAPENIQEKIFINSEIGFLNGVLENSEEALKYFYIAKDLGRNDNWIYMHLWLNLESTKGKEEALKYFEDEVKANDKNAVLWESLGQIYMNVFQDYDKAEKAFKKAFGLSGDGLNLYNRGIALRLLGKYEEAVEVLLHSRKISVQEGDVTDGEDLDLARCYVALKDKENAEKYLDLAREGLENVPEEHADEFEANLDELEDLIEKL
>NZ_CP013334.1|WP_029491957.1|1852203_1852695_-|hypothetical-protein
MPKIMLKSTTETKTESNNTLSLTKPVEKTKTTVDTLTLQRILRKKRSQKYMEAMKSLDAGGHVHNQEKVNELINIIREEFPEVELINSGMFLGILAKCYLGIPYEVHTLSFSFSIIEHYKKGQTLPDGMEKARAMAARGVYEYIEVYTDYCCAVSSDGTVSMI
>NZ_CP013334.1|WP_029491958.1|1852708_1854280_-|AAA-family-ATPase
MSDIKKAKELLKRYSSARIPFIVINTMERDRTLEVLKEVAEELTISFFVHTMSKGIYDISSGKVLSEDKSIYSAIDYMSDQMKRRQNLTLVLTGIPDISSENADAKQLFDLVTHANETGGSIIVFTNGGVWNQLQRLGMTLKIDNPNEEEMYDIIKKYIDDYRNEITIEWEEADIREAAAILNGVTRIEAENVIATLIAKREITKEDMDEVRFAKDRLFSNISGLEKIDVDESIISVGGLAGLRKWLDEKKELLKVEKKDLLKAKGLRSPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQSEQQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLFWLQESRKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTSEERFDIIKMYMRKYLSLDFAGELADKIVDMTEGFTGADLESTVRDLAYRVIANEDFVLDEENVVQAFSNVVPLSQTSPEKIAAIRDWGKERAVPASGKPIGAEEIKTNPESRTRKLLV
>NZ_CP013334.1|WP_005918671.1|1854291_1854732_-|hypothetical-protein
MNKAPKIYADWVKVFDILKSGEDDEAILSLMKEGTIVWQSGVAERFLKRLVDTVNFRLNRATDNFQKAHQTDENEIIQSLMQLRRELQFILKVVDINTIPVKEKTELRNMIINQSNSIQESLEKSAESDRSGKLSSIIKNNKVTIQ
>NZ_CP013334.1|WP_005918673.1|1854731_1854950_-|hypothetical-protein
MTQIMNRIKSAFKTITSNDETEKSEDNSMPFSITGTEEKVTKKIEKNEYEGFANGFPEWTLEPPQIAVRRKK
>NZ_CP013334.1|WP_029491959.1|1854961_1856683_-|hypothetical-protein
MADEYKISWANLKYIEESLSNLSSSIDYVNSRVDQVDDNVKVVYNEVEKLAIEFREYVEMQSLANRKAEAKINLSAIRDKLKDQFGHYDKVRRTATGILQANDLAIVKSEMLTNITEKQMIETPNYWLTPCLIALSAWINNDKALAERALAEGIRRNDEKTSLFFGLICRRIGREASSLKWLARYLEAQDEEKLDRKAVIILDAFASGLLGNDTENFVYEQIQEWMSSLEAKPGFTERQLDNWKNAINSKRVPLKNGLYPYLEKYSHTWNNLKDVLEGANLNNDLYEYFRGVFEQKEETKKLKVELDKILDSLVTEFDEEELPLKREEQFEELVVRYNGSESKAKSQIALEKSVYDDYRDFMQLLTDASMNPESSKSSVATQKFATALSRDNIVTAFNDVVAQNRMNVPYEIEINVDTFNDKTQDGEDEEEVLKRFEELIEQEKQQALSQAKLSIFEQFCLFGGIAVIAYGIIKTLMDASFAFVPIILGVGLILYHFSAKQRIQKFIQNTIQAYSQKLESGKQIIRATIAEIVDFRIEFSEKDAESKKVLDFFEQIKPEEYIRRLGNNERKII
>NZ_CP013334.1|WP_029491960.1|1856866_1857448_-|hypothetical-protein
MKKLVKILVFVLALFLMGCGEKKEELTGLHKEFDIIFNGIKEEATSEFNANKEEMEKVAKNSTGNEKEAEAMFNSFETVLEALKIATYSVENINDMGDKAELKIKVKSVDFVGLSDELLKNYKAKDNQSEAEVMIESMKEIYNTVKSGKAPMKEEEMDIQMVKENDKWVIDENTKNALMFQMMGTPEASPVNF
>NZ_CP013334.1|WP_005918680.1|1857648_1857861_-|hypothetical-protein
MNRDAKFINFSEEHELDYILKKYGKETNKENRDLLKEFGKKAKEFLGKTMLGHQDFYKYLEDNSLIEKLK
>NZ_CP013334.1|WP_029491961.1|1857947_1858898_-|TIM-barrel-protein
MYKLLNMADFCSNEELEKDMQYFSEKYGFDGYELIKFFDGDNSPLKKYIKGYHMRFFPSWMELYLEDFNSLYDELKDEKYFKSLCGGHSKKELIEYYKRELKIAKELEVEYVVFHACNVKVTEAMTYDFKYSDKEVLNAVISIINEIFEDGEYDFKLLFENLWWSGLRLTNKEEVEYLLNGVKYKNVGFILDTGHMINNNRDIKNSKEGIEYIKENIEKLGEYKNLIYGMHLNYSLSGEYVNRAIKENKEKNLSIEEIMNNVYQHVGSIDYHDPFEDKEIIDVIKSLPIEYLVFELIGDTREELEDKIQRQWKIFN

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Crispr_ID: NZ_CP013334_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013334_9

2395557-2395645

Orphan

Consensus_repeat	Method
ATAGAGCAGGTTCTGTAACAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013334_9

>merge|NZ_CP013334|9|2395557-2395645|CRISPRCasFinder
ATAGAGCAGGTTCTGTAACAAATTCATCAGTTCTAAATTCAACAGGAAATGGAAACTATGGAATTTATAGTGCAGGTTCTGTAACAAAT

>NZ_CP013334|9|7|2395557-2395645|CRISPRCasFinder
ATAGAGCAGGTTCTGTAACAAAT	TCATCAGTTCTAAATTCAACAGGAAATGGAAACTATGGAATTT
ATAGTGCAGGTTCTGTAACAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013334.1\|WP_029490837.1\|2390927_2391227_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013334.1\|WP_029490849.1\|2408395_2409049_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP013334.1\|WP_029491936.1\|2381941_2382598_+\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
NZ_CP013334.1\|WP_058118880.1\|2390508_2390781_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP013334.1\|WP_029490855.1\|2397858_2398446_-\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NZ_CP013334.1\|WP_029490853.1\|2400216_2404761_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377133
NZ_CP013334.1\|WP_029490851.1\|2405342_2407772_+\|CoA-disulfide-reductase	unknown	unknown	gnl\|CDD\|163244
NZ_CP013334.1\|WP_029491939.1\|2386326_2388510_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|227634
NZ_CP013334.1\|WP_058118879.1\|2389217_2389757_+\|adhesion-protein-FadA	unknown	unknown	gnl\|CDD\|370466
NZ_CP013334.1\|WP_029491938.1\|2384808_2386086_+\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP013334.1\|WP_029490839.1\|2389803_2390382_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380311
NZ_CP013334.1\|WP_029490854.1\|2398521_2399958_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|223338
NZ_CP013334.1\|WP_005916050.1\|2411963_2413547_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP013334.1\|WP_029490848.1\|2409286_2410279_-\|PTS-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226167
NZ_CP013334.1\|WP_005916053.1\|2410605_2411859_+\|DUF3798-domain-containing-protein	unknown	unknown	gnl\|CDD\|378916
NZ_CP013334.1\|WP_029490850.1\|2407900_2408386_+\|cytidine/deoxycytidylate-deaminase-family-protein	unknown	unknown	gnl\|CDD\|225042
NZ_CP013334.1\|WP_029491935.1\|2380993_2381926_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|225173
NZ_CP013334.1\|WP_029491940.1\|2388493_2388964_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP013334.1\|WP_029491937.1\|2382626_2384549_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|224436
NZ_CP013334.1\|WP_029490852.1\|2404810_2405170_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647

Protein	Function_ID	Function_description	E-value
NZ_CP013334.1\|WP_029490849.1\|2408395_2409049_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	3.13126e-23
NZ_CP013334.1\|WP_029491936.1\|2381941_2382598_+\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	2.30635e-107
NZ_CP013334.1\|WP_058118880.1\|2390508_2390781_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	3.87442e-20
NZ_CP013334.1\|WP_029490855.1\|2397858_2398446_-\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	8.74459e-64
NZ_CP013334.1\|WP_029490853.1\|2400216_2404761_+\|hypothetical-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	1.57514e-08
NZ_CP013334.1\|WP_029490851.1\|2405342_2407772_+\|CoA-disulfide-reductase	gnl\|CDD\|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	1.48374e-152
NZ_CP013334.1\|WP_029491939.1\|2386326_2388510_+\|metallophosphoesterase	gnl\|CDD\|227634	COG5324, COG5324, Uncharacterized conserved protein [Function unknown].	3.72027e-106
NZ_CP013334.1\|WP_058118879.1\|2389217_2389757_+\|adhesion-protein-FadA	gnl\|CDD\|370466	pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.	1.36595e-13
NZ_CP013334.1\|WP_029491938.1\|2384808_2386086_+\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP013334.1\|WP_029490839.1\|2389803_2390382_-\|nitroreductase-family-protein	gnl\|CDD\|380311	cd02062, Nitro_FMN_reductase, nitroreductase family protein. Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.	6.14255e-22
NZ_CP013334.1\|WP_029490854.1\|2398521_2399958_-\|leucyl-aminopeptidase	gnl\|CDD\|223338	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism].	0
NZ_CP013334.1\|WP_005916050.1\|2411963_2413547_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	4.92019e-173
NZ_CP013334.1\|WP_029490848.1\|2409286_2410279_-\|PTS-transporter-subunit-IIC	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	5.07972e-108
NZ_CP013334.1\|WP_005916053.1\|2410605_2411859_+\|DUF3798-domain-containing-protein	gnl\|CDD\|378916	pfam12683, DUF3798, Protein of unknown function (DUF3798). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 247 and 417 amino acids in length. Most of the proteins in this family have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families such as pfam02608, which suggests that this family have a similar role.	2.91837e-162
NZ_CP013334.1\|WP_029490850.1\|2407900_2408386_+\|cytidine/deoxycytidylate-deaminase-family-protein	gnl\|CDD\|225042	COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism].	4.29611e-60
NZ_CP013334.1\|WP_029491935.1\|2380993_2381926_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|225173	COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis].	3.28517e-110
NZ_CP013334.1\|WP_029491940.1\|2388493_2388964_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	1.24492e-63
NZ_CP013334.1\|WP_029491937.1\|2382626_2384549_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|224436	COG1519, KdtA, 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane].	2.95932e-152
NZ_CP013334.1\|WP_029490852.1\|2404810_2405170_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	7.64512e-41

>NZ_CP013334.1|WP_029490837.1|2390927_2391227_-|hypothetical-protein
MKPEVRDAINNINRFIQETKFIDVSSNLKVEENVVARNLQGKEEDVIAEVMENLELIFKEISKVHNKGQADEYTERYYYLSDKIYDDIDKFKADFFITK
>NZ_CP013334.1|WP_058118880.1|2390508_2390781_-|30S-ribosomal-protein-S20
MANSKSAKKRVLVAERNRVRNQAVKTRVKTMAKKVLATLEVKDVEAAKAALSVAYKEVDKSVIKGILKKNTVSRKKARLAAKVNALVNSL
>NZ_CP013334.1|WP_029490839.1|2389803_2390382_-|nitroreductase-family-protein
MIIDNIKHTRSHRRFTEKKINEEEILEMLEGARFSASTKNAQILRYSYTIDDEKCQKLFSAVSLGGLLKNQDKATFEERARGFILISAKKNITTPDSRLYFDVGIATQNIILIADELGYGACIVMSYNKKAFEEILGLPEEYDSKAVIILGEAKDIVKVIDSKDEEDTKYFVEDGIHHVSKLKLGDLILAKK
>NZ_CP013334.1|WP_058118879.1|2389217_2389757_+|adhesion-protein-FadA
MKAKILLCSMLILGSLSYAAEADSVAQEVMSEVKNIEAEYQALMQKEMERKEEFKQEKETLEKEVQELKERQLGREELYAKLKEDSKVRWHRDEYKKLLKRFDEYYNKLEQKIADKEQQITELTKIEIKGLKIIFEHEIYSGGDLAITGTATVLAYNYEEQKVKKVPTTFKEIVEKYII
>NZ_CP013334.1|WP_029491940.1|2388493_2388964_+|DUF523-domain-containing-protein
MKKKIKVLISACLLGDNVKYSGGNNLTPELVTLLEKYNVDIVKVCPECFAGLPIPRLPSEIKEGKVYSKDGMDITEEFLDGAEKTYEVAERKQADFAILKERSPSCGSSYIYDGSFSGKVIEGQGFTTKRLNEENIIVFSEENLEEIEKYLQELNK
>NZ_CP013334.1|WP_029491939.1|2386326_2388510_+|metallophosphoesterase
MRTLLLLRGIQASGKSTWIKENNLEPYTLSADNIRLNIANPVLLEDGSYEISQKYNKVTWELLYKYLEMRMQNGDFTIIDATHSDIKLMNKYRDLANTYKYTMYCLEFDIPLEEALKRNKERDNYKYVPERVIERTYETIKNNEKLPSGLKKIESIDEIINFYTADVNQYKKVVIIGDIHSCAEPLKEVLKDFNEETLYVFVGDYFDRGIQPVEIFNIMLDLLEKPNVILIEGNHEEKSMKKFIYDEEKYTKSFEETTLLPLLKEYDIDYVRASLKKIYKKLRQCFAFEFRGEKFLCTHGGLPLVPKLTLVSAKEMIHGVGKYETEIGEIYSENYKKGLCQDFIQVHGHRGINDGEYSYCLEARVEFGGELKVLTIDNEGNIEKYGIKNDVYNRGLKLPMSGAREKVEFNTTNELINEMIGHKFITVKECDYNLISLNFNREAFNKKKWNDLTIKARGLFVDKDSGEVKIRSYNKFFNFGERHVNLGYLNKYATYPIRVFKKYNGFLGLASIVNNEVVLTSKSVTSGKYKDIFQNIWDKVEDEVRELLKKTMIENNCTAVFEVVSPEYDPHIIKYDKEHLYLLDFIENKLDLDTHNIDLGFSENLMKKVEFSSNLLTKKEELTRLENYDELYNFLHEKTMSLEEFEGYVLCDNSGFMFKFKLPYYNLWKERRGWLERYRSALAKGKKVEVTEKDEHRHFKKFLLKLGKDKLEGLSIIDVRELYEKEN
>NZ_CP013334.1|WP_029491938.1|2384808_2386086_+|adenylosuccinate-synthase
MAGYVVVGTQWGDEGKGKIIDVLSEKADYVVRFQGGNNAGHTVVVDGEKFILQLLPSGVLQAGTCVIGPGVVVDPKVFLEEIDRIEKRGAKTDHVIISDRAHVIMPYHIEMDKIRESVEDRIKIGTTKKGIGPCYADKIARDGIRMSDLLDLKQFEEKLRANLKEKNEIFTKIYGLEPLDFDKIFEEYKGYIEKIKHRIVDTIPIVNKALDENKLVLFEGAQAMMLDINYGTYPYVTSSSPTLGGVTTGAGVSPRKIDKGIGVMKAYTTRVGEGPFVTEIKGEFGDKIRGIGGEYGAVTGRPRRCGWLDLVVGRYATEINGLTDIVMTKIDVLSGLGKLKICTAYEIDGKIYDYVPADTKALDRAIPIYEELDGWDEDITQIKKYEDLPVNCRKYLERVQEILDCPISVVSVGPDRSQNIHIREI
>NZ_CP013334.1|WP_029491937.1|2382626_2384549_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MYNLLRKIALTLYKPFMKEKMKTFINKRLSQDFSDLKDEEYIWIHCSSVGEVNLSEDLVKKFYSISRKNILISVFTDTGYENAVKKYSDKKKIKVIYFPVDDKKKINEILNKIKLKLLVLVETELWPNLINETKKKQSRIIIVNGRISDRSYPRYKKLKFLLKSMLQKIDFFYMQSEVDKERIISLGASKNKIKNVGNLKFSISLEKYSDNEKEEYRKFLNIGDRKVFVAGSTRTGEDEIILDVFKKIKNYVLIIVPRHLDRLAKIENLIKENNLTYVKYSELENKVSTGKEDIILVDKMGVLRKLYSISDIAFVGGTLVNIGGHNLLEPLFYRKAVIFGKYTQNVVDIAKEILRRKIGFQVENVEEFVKAIETIENEKNSDEEINSFFEENRLIALNIVKKENLIMNNIKEEAKDLWKHFFHSEKSNYNIYMYKLLDYPEYIMYDNDVMKEKKSKWSEYFGNSNPIAVEIGTGSGNFMYQLAERNPNKNFIGLELRFKRLVLATQKCKKRNLKNVAFLRKRGEELEDFLADNEISEMYINFPDPWEGTEKNRIIQERLFKTLDKIMKKDGMLYFKTDHDMYYSDVLELVKTLKNYEVIYHTSDLHNSEKAENNIKTEFEQLFLHKHNKNINYIEIKKLV
>NZ_CP013334.1|WP_029491936.1|2381941_2382598_+|(d)CMP-kinase
MNNIIVAIDGPAGSGKSTIAKIIAKKFNFTYIDTGAMYRMITLYLLENNIDFDNLKEIEKVLNTVNLDMQGDKFYLNNVDVTTKIREKRINENVSKVASIKIVRSNLVDLQRKVSNNKNVILDGRDVGTVIFPNAQVKIFLIASPEERARRRYNEFLEKKTEITYDEVLKSIKERDHIDSTRDESPFVKADDAIELDSTNLTIDDVVNFISKEIEKVK
>NZ_CP013334.1|WP_029491935.1|2380993_2381926_+|50S-ribosomal-protein-L11-methyltransferase
MKVLEAKIIYESDDLEKYKKIISDIFYDFGVTGLKIEEPILNKDPLNFYKDEKQFLISENSVSAYFPLNIYSEKRKKVLEETFAEKFSEDEDIVYNLDFYEYDEEDYQNSWKKYLFVEKVSEKFVVKPTWREYEKQDNELVIELDPGRAFGTGSHPTTSLLLKLMEKQDFSNKSVIDIGTGSGILMIAGKFLGAGEVYGTDIDEFSMEVAKENLILNNISLNDVKLLKGNLLEVIENKKFDIVVCNILADVLVKLLDEIKYILKENSIVLFSGIIEDKLNEVTSKAEDVGLEVVEVKADKEWRAVYFKRK
>NZ_CP013334.1|WP_029490855.1|2397858_2398446_-|YigZ-family-protein
MEKIKTVKKECKIEFEEKKSKFIGYVKPVFSKEEAEEYIRHIKNLHSDATHNCSAYKINNNGLEFFKVDDDGEPSGTAGKPMGDIINYMEVTNLVVIATRYFGGIKLGAGGLVRNYAKTAKLAITEAEIIDFIDKIDLIFEIPYERLSEVEKLLKDYEAEVIDKSFLEKIVFKVRINKDFYDNLENYPFINLLDI
>NZ_CP013334.1|WP_029490854.1|2398521_2399958_-|leucyl-aminopeptidase
MSFQCVKKYEDSYDKYVLLATSGKVVLPDYLDKESQKLAETIIKKNKFTAKASEKISMTLVNKKKVIDFTIVGLGEKKKLDSKNIRQYLFDGLKNITGKTFVSFNDKDLDNMDVVAEVVEHINYKFDKYFSKKKEEFLEVSYLTDKKVPKLIEGYELAKISNIVKDLVNEQAEVLNPKELADRTVKLGKNFGFEVEILDEKKAQKLGMTAYLAVARAAHHRPYVIVMRYKGDAKSKYTYGLVGKGLTYDTGGLSLKPTESMLTMRCDMGGAATMIGAMCSIAKMKLKKNVTCVVAACENSIGPNAYRPGDILTAMNGKTIEVTNTDAEGRLTLADALTYIVRKEKVNEVIDAATLTGAVMVALGEDVTGVFTNNDKMARKIIDSSENWNEYFWQMPMFDIFKKNLKSPYADMQNTGVRWGGSTNAAKFLEEFIDDTKWVHLDIAGTAWASGANPYYCQKGATGQVFRTVYSYIKDSKN
>NZ_CP013334.1|WP_029490853.1|2400216_2404761_+|hypothetical-protein
MFKNKYLFVLALLVTTTSYSENYIVTQENKKEAKEVLKHEKEDSGRIGEFAVSGNVIIFKGNGFLINDGVLKGSIKAVGEDTKNEKSKKGEIIVTAQGNGVSGVGYSPYSNKRDVDKKINSIKNSGYISGEANLTGGNAVTHGALEEVYSVANGISGLTLADFGDTATGGSGDSGIVDGAGGASRSGRSKSVSLLSTKVLASKTVEKISENKIGEIKKTDPADFHGKNNKFTLEDIVNTGNISGKAILRTKEGYIKPDSEAFAGNKAMSPQWRTINATSTANGIANMAYLTTIDKYTYSEDKVNGAYIKSVKNSGNISGEAEAKTGSLATLNNIRAYATANGISSVAYSNNFVKSLTEATIDKVENEGNISGKLKAEVGHNTSRGIHEYSQALVTGSANGISVYSRSSNGQMKNSRAVLGELSNTGSISGDLYARGGSGYGEARADIKSSGNGVAVYTESSVKKETKIGSVNNQGMITGKAVVYGGKDKRAMNDKELKDKIFHVPLTNNISGFSLPEEDVEDDKAAVAEMRKYEKEKANELENNIAKYQKLVGDKEKEILAKSPKSPQLSEQDKINRDNIFKKYINDEIKEQQDLIWSGINNETVTKARKRKAELEELKSAATDEQKNQFLEEYKNELEKRLLIPRLQLYVKNKINDKLKKINEILEKNKNKNIPDSPEILALKEEKKKLEGDLANLLKEKKDIENDHVAANVNTVTGMEASGNGISINDGSQTGVELGSFKNSGVISGETEIHHGNSQRKYTRIAHKNSGAGVAVGGDVLSKIENTGIISGTEFALLAKGSRSDAYGLKKEDIVYKSGFKGGVDNYGILAGRIIIGGYQVAHTGTHGEWGAIEEDYAYFETIYKDEKHYNNKGIFLVLDRNGEVKKVIGKNEDATYNGRTVKNVLDKDSTYQGDTTNKIINGVGKDGVVIAKENQDRNIDNSIVNGFKTAVKVEDRGVARISNSTINANGFGNSYAILGDEGANEVEITNKSIINGKIDLGAGDDRLTLSGNYRLNREVDLGKGNNTLAFGKKENTTISTLSYSTFGTSSTNTSVFNGTVNNANKVEVNENTAFSSSSRINGVNELNLANGKTLDYYFVDKENQAFAELAKNNRNLKVNGSGKVNLVPIGNKVQIGYEKDLLGFSFGNNLLKPNSNGGNNNSSNNNPGNNGNNGNNNNPGNNVPGNNGNFFIDPRLTPFEKYSKGAFDAYIADYKSTGIDFLKDYKSSQEVFKNYLYNLTNNNPVGYLKDSAIDTMLAYHKVNTNNFTKKGQLAVSGETFNIRNKYYENNKVVSNGALAEISYGTSDNTNIGLNIGGGQSKVKTSDENLKSEVLVLGVNAEYKVKNFSWQNEVSYGRIKPKKYSTLDTYSLYSQLGYNIPLSETWNLIPKVSVFLSKVKQKEMTVDNIKVTKDDDTFVETTVGTELNKKFMFGNNGINFGLGVDYSMVKDLDDSKAHFIGGSTEFDLRNYDRKNRATAEIKFGYEHISGITATFRIRKNKDITSSGFGLGYKF
>NZ_CP013334.1|WP_029490852.1|2404810_2405170_-|helix-turn-helix-transcriptional-regulator
MDKNKKYNCFFEFTLDIVGGKWKPIILYYIDINSVARHSELKRFIPSINERMLTRQLRELEEDNLIERKVYPIVPPKVEYTLTEYGKSLIPILKSLVLWGKDYAKAIRFDNFKMEFPEE
>NZ_CP013334.1|WP_029490851.1|2405342_2407772_+|CoA-disulfide-reductase
MEKVLIVGGVAGGASTATRLRRLDENLEIIIFEKGEYVSFANCGLPYHIGDVIQNRESLLVQTPESLKARFNLDVRVNSEVVGVNGKDKKVKVKTKNGEEYEEIFDFLVLAPGAKPLFPPIKGIENKKIFTLRNINDMDKIKSEIKNNAIKKAVVVGGGYVGVETAENLKHLGIDTTLVEAAPHILAPFDSEISNILEYELVNNGIELMTSEKVVEFQENGNEIIIKLESGKSVTTDMVILSIGVSPDTKFLEGSGINLGERGHILVNENLETNIDGVYALGDSILVKNYITNQDVAIPLAGPANRQGRIVAENIVGRNEKYKGSLGTAIIKIFELTGASTGLNERSLKQLNITYEKIYLHPNNHAAYYPGASPISIKALYNKENKQILGAQAVGINGVDKFIDVIATSIKFKATIDDLAELELAYAPPFLSAKSPANMVGFIGQNIEDGLLEQMFMEDLKNYNEKEIVILDVREELELIGGKFDNSINIPLSELRKRYTELPKDKEIWTYCAVGLRGYIATRFLSQKGYRVKNLAGGIKSEEKVIVNTQKESSLTKEGNSNIEKEEDYLDLSGLSCPGPLVKIKEKIDKLGEDEKLKVKVSDPGFYNDIQAWSKVTKNPLLSLDKKDGLTYATLQKGQTSKVIEKNQENVIIEDNSNMTMVVFSGDLDKAIAAFIIANGALTMGKKVTMFFTFWGLSILKKKNLAKKSFIEKMFAMMLPKNSQDLPVSKMNFFGIGAKMIRSVMKKKNIMSLEELIKKAEDLGVNITACTMSMDVMGISREELIDGINYGGVGQYLGEAEKSNNNLFI
>NZ_CP013334.1|WP_029490850.1|2407900_2408386_+|cytidine/deoxycytidylate-deaminase-family-protein
MRENYINWDSYFMGIAILSSMRSKDPNTQVGACIVNDEKRIVGVGYNGLPKGCDDKEFPWERDGEFLNTKYPYVCHAELNAILNSIKSLKDCIIYVALFPCHECTKAIIQSGIKEIVYLSDKYTNTDSNRASKKMLDAAGVKYRRFEPDIEKLEINFANIE
>NZ_CP013334.1|WP_029490849.1|2408395_2409049_+|Crp/Fnr-family-transcriptional-regulator
MIETLRETVIFNGIDEKTIKNILEKTKYEIKKYSPDESIAFRGDEVKGLYMILKGTLTTEMLTEEGNVIKIEELGPSDVIASAFIFGKKNSFPVDLIAKDEAEILFVERKEFLKILFSKEKILENFLNEVSNKTQLLTSKIWNSFNNKTIKKKFCDYVKKNQKNYLFSIQSLGALAEYFGVERPSLSRVLSDLVKDEKLERIGRNKYKILDKEFFEI
>NZ_CP013334.1|WP_029490848.1|2409286_2410279_-|PTS-transporter-subunit-IIC
MKNFFIKSLNGMAFGLFSSLIVGLILKQIGTLFNIEFLTYLGGFSQLLMGAGIGVGVAYALETHVLILIASAITGMYGAGSINFVDGQAILKVGEPMGAYFSVIFGLLISKQIAGKTKFDIILLPMTTIIFGCLLGKFFAPYISAVISEIGVIVNKTTELRPILMGLTMSVIMGIILTLPISSAAIGISLGLSGLAAGASLTGCCCQMIGFAVMSYDDNDLGTVFSIGFGTSMIQIPNIIKNPIIWIPPIASSAILGVLSTTVFNLSSNSIASGMGTSGLVGQIASFSVNGMSYLPTMIILHFILPAILTFIIYKVLKKKGLIKAGDLKI
>NZ_CP013334.1|WP_005916053.1|2410605_2411859_+|DUF3798-domain-containing-protein
MKMKKILFSLLAIFMLVVAVACGKKEAPTEDANAQQQGATTEATQNYHIGIVTTSVSQSEDNFRGAEAVAKKYGLSNEGGKITIVTVPDNFMQEQETTISQMVSLADDPEMKAIVVAEGIPGTYPAFKAIREKRPDILLIVNNTHEDPVQVSTVADVVVNSDSVARGYLIVKTAHDLGATKFMHISFPRHLSYETISRRRAIMEQTAKDLGMEYIEMSAPDPVSDVGVPGAQQFILEQVPNWIAKYGKDTAFFATNDAQTEPLLKQIAAHGGYFIEADLPSPTMGYPGALGIEFSDDEKGNWPKILEKVEKVVVEAGGSGRMGTWAYSYNFSGLEGLTDLAVKSIETGDKDFTLDKVLASLDTVTPGSKWNGSLMKNNNGVEIPNSFFVYQDTYIFGKGYMGVTSVEVPEKYGKIGK
>NZ_CP013334.1|WP_005916050.1|2411963_2413547_+|sugar-ABC-transporter-ATP-binding-protein
MSDTILKIENLSKSFGDNTVLKDINLELKAGEILGLVGENGAGKSTLMKIIFGMDVIRETGGYNGKISFDGKEVNFASPFDALNAGIGMVHQEFSLIPGFKVSENIVLNRESTKNNLMTHLFGQGISKIDQKNNTKRAQEAISKLGVSLTGQEQINEMAVAYKQFTEIAREIEREHTKLLVLDEPTAVLTEDEAEILLETMKKLSNKGITIIFITHRLNEIMAVSDKVTVLRDGQLINTVPTKSTNVNEITEWMIGRKVSSSSEGKNIDNSKLESLMEIKDLWVDMPGEMLKGLDLDIKKGEILGLGGMAGQGKIAVANGVMGLFKSKGNVKYKGEDLVLNKATYPLEKGIFFVSEDRKGVGLLLDESIERNIAFPAMEIKGQFLKKYLGLINVVDDKAVTDNAKKYIEKLEIKSMGEKQKVAELSGGNQQKVCMAKAFTMEPDLLFVSEPTRGIDVGAKQLVLETLKEYNRERNTTIVVTSSEIEELRSICDRIAIINEGKVAGILPATASILDFGKLMSGIKEGE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP013334_2	2.1\|583254\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583254-583290	37	NZ_CP013334.1	555176-555212	1.0
NZ_CP013334_2	2.3\|583388\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583388-583424	37	NZ_CP013334.1	537211-537247	1.0
NZ_CP013334_2	2.16\|584256\|36\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	584256-584291	36	NZ_CP013334.1	548640-548675	1.0
NZ_CP013334_2	2.29\|585123\|39\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	585123-585161	39	NZ_CP013334.1	260748-260786	1.0
NZ_CP013334_2	2.32\|585327\|39\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	585327-585365	39	NZ_CP013334.1	238223-238261	1.0

1. spacer 2.1|583254|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to position: 555176-555212, mismatch: 0, identity: 1.0

gcttttgtatattctaaaattatttcttcagttggaa	CRISPR spacer
gcttttgtatattctaaaattatttcttcagttggaa	Protospacer
*************************************

2. spacer 2.3|583388|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to position: 537211-537247, mismatch: 0, identity: 1.0

atttttcttatttctagcatcatgtcctcctgttttc	CRISPR spacer
atttttcttatttctagcatcatgtcctcctgttttc	Protospacer
*************************************

3. spacer 2.16|584256|36|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to position: 548640-548675, mismatch: 0, identity: 1.0

aataaatctaaaacattccaattttctttgcttgaa	CRISPR spacer
aataaatctaaaacattccaattttctttgcttgaa	Protospacer
************************************

4. spacer 2.29|585123|39|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to position: 260748-260786, mismatch: 0, identity: 1.0

attacatcagtttcttttaatttgctaacatctaagaaa	CRISPR spacer
attacatcagtttcttttaatttgctaacatctaagaaa	Protospacer
***************************************

5. spacer 2.32|585327|39|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to position: 238223-238261, mismatch: 0, identity: 1.0

aacatagcaacagctgcatcatcattaatcaatgattca	CRISPR spacer
aacatagcaacagctgcatcatcattaatcaatgattca	Protospacer
***************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013334_2	2.16\|584256\|36\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	584256-584291	36	KR131710	Fusobacterium phage Funu1, complete genome	15557-15592	0	1.0
NZ_CP013334_2	2.25\|584855\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	584855-584891	37	KR131710	Fusobacterium phage Funu1, complete genome	35640-35676	2	0.946
NZ_CP013334_5	5.7\|1300589\|40\|NZ_CP013334\|CRISPRCasFinder,PILER-CR	1300589-1300628	40	NZ_CP053469	Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence	34271-34310	2	0.95
NZ_CP013334_5	5.24\|1300590\|39\|NZ_CP013334\|CRT	1300590-1300628	39	NZ_CP053469	Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence	34271-34309	2	0.949
NZ_CP013334_2	2.25\|584855\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	584855-584891	37	KR131711	Fusobacterium phage Funu2 supercont1.1, partial genome	3115-3151	3	0.919
NZ_CP013334_7	7.3\|1643223\|22\|NZ_CP013334\|CRISPRCasFinder	1643223-1643244	22	NZ_CP028885	Borrelia turcica IST7 plasmid lp129, complete sequence	71704-71725	3	0.864
NZ_CP013334_7	7.3\|1643223\|22\|NZ_CP013334\|CRISPRCasFinder	1643223-1643244	22	NZ_CP028885	Borrelia turcica IST7 plasmid lp129, complete sequence	71791-71812	3	0.864
NZ_CP013334_7	7.3\|1643223\|22\|NZ_CP013334\|CRISPRCasFinder	1643223-1643244	22	NZ_CP028885	Borrelia turcica IST7 plasmid lp129, complete sequence	71824-71845	3	0.864
NZ_CP013334_7	7.3\|1643223\|22\|NZ_CP013334\|CRISPRCasFinder	1643223-1643244	22	NZ_CP028885	Borrelia turcica IST7 plasmid lp129, complete sequence	71875-71896	3	0.864
NZ_CP013334_7	7.3\|1643223\|22\|NZ_CP013334\|CRISPRCasFinder	1643223-1643244	22	NZ_CP028885	Borrelia turcica IST7 plasmid lp129, complete sequence	71908-71929	3	0.864
NZ_CP013334_7	7.3\|1643223\|22\|NZ_CP013334\|CRISPRCasFinder	1643223-1643244	22	NZ_CP028885	Borrelia turcica IST7 plasmid lp129, complete sequence	71941-71962	3	0.864
NZ_CP013334_5	5.18\|1300140\|32\|NZ_CP013334\|CRT	1300140-1300171	32	MN855975	Siphoviridae sp. isolate 45, complete genome	7294-7325	6	0.812
NZ_CP013334_2	2.27\|584988\|39\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	584988-585026	39	KR131711	Fusobacterium phage Funu2 supercont1.1, partial genome	34810-34848	7	0.821
NZ_CP013334_5	5.18\|1300140\|32\|NZ_CP013334\|CRT	1300140-1300171	32	NC_049968	Bacillus phage DK2, complete genome	83-114	7	0.781
NZ_CP013334_2	2.8\|583722\|36\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583722-583757	36	AJ344259	Sulfolobus virus SIRV-2 genomic DNA	29362-29397	8	0.778
NZ_CP013334_5	5.1\|1300139\|33\|NZ_CP013334\|CRISPRCasFinder	1300139-1300171	33	NC_049968	Bacillus phage DK2, complete genome	82-114	8	0.758
NZ_CP013334_2	2.8\|583722\|36\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583722-583757	36	MT773554	Myoviridae sp. isolate BML_2 genomic sequence	45193-45228	9	0.75
NZ_CP013334_2	2.5\|583523\|38\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583523-583560	38	NC_008014	Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence	192538-192575	11	0.711
NZ_CP013334_2	2.5\|583523\|38\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583523-583560	38	NC_020130	Lawsonia intracellularis N343 plasmid 3, complete sequence	192560-192597	11	0.711

1. spacer 2.16|584256|36|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to KR131710 (Fusobacterium phage Funu1, complete genome) position: , mismatch: 0, identity: 1.0

aataaatctaaaacattccaattttctttgcttgaa	CRISPR spacer
aataaatctaaaacattccaattttctttgcttgaa	Protospacer
************************************

2. spacer 2.25|584855|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to KR131710 (Fusobacterium phage Funu1, complete genome) position: , mismatch: 2, identity: 0.946

aatgaaactctatattttagtgcttcttatagaaata	CRISPR spacer
aacgagactctatattttagtgcttcttatagaaata	Protospacer
**.**.*******************************

3. spacer 5.7|1300589|40|NZ_CP013334|CRISPRCasFinder,PILER-CR matches to NZ_CP053469 (Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.95

tcactagaagatataatgttagaatcttattcttcagttg	CRISPR spacer
tcattagaagatataatgttagaatcttattctccagttg	Protospacer
***.*****************************.******

4. spacer 5.24|1300590|39|NZ_CP013334|CRT matches to NZ_CP053469 (Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.949

cactagaagatataatgttagaatcttattcttcagttg	CRISPR spacer
cattagaagatataatgttagaatcttattctccagttg	Protospacer
**.*****************************.******

5. spacer 2.25|584855|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to KR131711 (Fusobacterium phage Funu2 supercont1.1, partial genome) position: , mismatch: 3, identity: 0.919

aatgaaactctatattttagtgcttcttatagaaata	CRISPR spacer
gataaaactctatattttagtgcttcttacagaaata	Protospacer
.**.*************************.*******

6. spacer 7.3|1643223|22|NZ_CP013334|CRISPRCasFinder matches to NZ_CP028885 (Borrelia turcica IST7 plasmid lp129, complete sequence) position: , mismatch: 3, identity: 0.864

ccactggtgctgttggtgctcc	CRISPR spacer
ttcctggtgctgttggtgctcc	Protospacer
.. *******************

7. spacer 7.3|1643223|22|NZ_CP013334|CRISPRCasFinder matches to NZ_CP028885 (Borrelia turcica IST7 plasmid lp129, complete sequence) position: , mismatch: 3, identity: 0.864

ccactggtgctgttggtgctcc	CRISPR spacer
ttcctggtgctgttggtgctcc	Protospacer
.. *******************

8. spacer 7.3|1643223|22|NZ_CP013334|CRISPRCasFinder matches to NZ_CP028885 (Borrelia turcica IST7 plasmid lp129, complete sequence) position: , mismatch: 3, identity: 0.864

ccactggtgctgttggtgctcc	CRISPR spacer
ttcctggtgctgttggtgctcc	Protospacer
.. *******************

9. spacer 7.3|1643223|22|NZ_CP013334|CRISPRCasFinder matches to NZ_CP028885 (Borrelia turcica IST7 plasmid lp129, complete sequence) position: , mismatch: 3, identity: 0.864

ccactggtgctgttggtgctcc	CRISPR spacer
ttcctggtgctgttggtgctcc	Protospacer
.. *******************

10. spacer 7.3|1643223|22|NZ_CP013334|CRISPRCasFinder matches to NZ_CP028885 (Borrelia turcica IST7 plasmid lp129, complete sequence) position: , mismatch: 3, identity: 0.864

ccactggtgctgttggtgctcc	CRISPR spacer
ttcctggtgctgttggtgctcc	Protospacer
.. *******************

11. spacer 7.3|1643223|22|NZ_CP013334|CRISPRCasFinder matches to NZ_CP028885 (Borrelia turcica IST7 plasmid lp129, complete sequence) position: , mismatch: 3, identity: 0.864

ccactggtgctgttggtgctcc	CRISPR spacer
ttcctggtgctgttggtgctcc	Protospacer
.. *******************

12. spacer 5.18|1300140|32|NZ_CP013334|CRT matches to MN855975 (Siphoviridae sp. isolate 45, complete genome) position: , mismatch: 6, identity: 0.812

aatgtatagtttaagatatctaaaataaaatt	CRISPR spacer
aatagaatatttaagatatctaaaataaattt	Protospacer
***. *  .******************** **

13. spacer 2.27|584988|39|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to KR131711 (Fusobacterium phage Funu2 supercont1.1, partial genome) position: , mismatch: 7, identity: 0.821

cacaaatctataaacttctaatttctctgagttctgtat	CRISPR spacer
cacaaatctataaacttctaacttctctgcatttctttt	Protospacer
*********************.******* .**.. * *

14. spacer 5.18|1300140|32|NZ_CP013334|CRT matches to NC_049968 (Bacillus phage DK2, complete genome) position: , mismatch: 7, identity: 0.781

aatgtatagtttaagatatctaaaataaaatt	CRISPR spacer
taaatatagtttaaaatatctaaaataaatca	Protospacer
 * .**********.************** .

15. spacer 2.8|583722|36|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to AJ344259 (Sulfolobus virus SIRV-2 genomic DNA) position: , mismatch: 8, identity: 0.778

tgttctaaaactttatctatagctttttcaaaatta	CRISPR spacer
acttctagaattttatctatagctttttcaatacac	Protospacer
  *****.**.******************** *.

16. spacer 5.1|1300139|33|NZ_CP013334|CRISPRCasFinder matches to NC_049968 (Bacillus phage DK2, complete genome) position: , mismatch: 8, identity: 0.758

taatgtatagtttaagatatctaaaataaaatt	CRISPR spacer
ctaaatatagtttaaaatatctaaaataaatca	Protospacer
. * .**********.************** .

17. spacer 2.8|583722|36|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to MT773554 (Myoviridae sp. isolate BML_2 genomic sequence) position: , mismatch: 9, identity: 0.75

tgttctaaaactttatctatagctttttcaaaatta	CRISPR spacer
cccatcaaaactttatctttagctctttcaaaatga	Protospacer
. . ..************ *****.********* *

18. spacer 2.5|583523|38|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NC_008014 (Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence) position: , mismatch: 11, identity: 0.711

gtggtatttaataaatattaaaaatatagataaaaaag	CRISPR spacer
aaaatatttaataaatattaaaagtatatatctataca	Protospacer
. ..*******************.**** **  * * .

19. spacer 2.5|583523|38|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NC_020130 (Lawsonia intracellularis N343 plasmid 3, complete sequence) position: , mismatch: 11, identity: 0.711

gtggtatttaataaatattaaaaatatagataaaaaag	CRISPR spacer
aaaatatttaataaatattaaaagtatatatctataca	Protospacer
. ..*******************.**** **  * * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

138434 : 202659

Fusobacterium_phage(70.0%)

integrase,transposase,plate,tRNA,holin,terminase,protease,capsid

attL 138748:138807|attR 176756:176815

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029492048.1\|138434_138647_+	hypothetical protein	E8ZDL3	Streptococcus_phage	1.6e-14	56.2
138748:138807	attL	NA	NA	NA	NA
WP_029492047.1\|138908_139976_-\|integrase	site-specific integrase	A0A0E3Y5J2	Fusobacterium_phage	1.4e-50	35.6
WP_029492046.1\|140012_140204_-	hypothetical protein	NA	NA	NA	NA
WP_158406040.1\|140205_140379_-	hypothetical protein	NA	NA	NA	NA
WP_029492045.1\|140378_140588_-	hypothetical protein	NA	NA	NA	NA
WP_029492044.1\|140590_141103_-	dUTP diphosphatase	A0A0E3U2S3	Fusobacterium_phage	5.7e-50	60.8
WP_029492043.1\|141092_141272_-	hypothetical protein	NA	NA	NA	NA
WP_023037294.1\|141271_141562_-	hypothetical protein	A0A0E3T9M1	Staphylococcus_phage	3.1e-05	37.0
WP_029492041.1\|141566_141869_-	hypothetical protein	NA	NA	NA	NA
WP_029492040.1\|141861_142071_-	hypothetical protein	NA	NA	NA	NA
WP_029492039.1\|142088_142289_-	hypothetical protein	NA	NA	NA	NA
WP_029492038.1\|142288_142495_-	hypothetical protein	NA	NA	NA	NA
WP_029492037.1\|142504_143080_-	hypothetical protein	NA	NA	NA	NA
WP_158406039.1\|143182_143332_-	hypothetical protein	NA	NA	NA	NA
WP_032894462.1\|143328_143916_-	hypothetical protein	A0A0E3Y6J2	Fusobacterium_phage	8.7e-103	91.8
WP_029492035.1\|144055_144292_-	hypothetical protein	NA	NA	NA	NA
WP_029492034.1\|144311_144668_-	single-stranded DNA-binding protein	A0A097PAQ3	Streptococcus_pyogenes_phage	2.9e-13	34.1
WP_029492033.1\|144664_145252_-	DUF1071 domain-containing protein	A0A2I7R6P9	Vibrio_phage	1.7e-18	32.4
WP_029492032.1\|145260_145566_-	hypothetical protein	NA	NA	NA	NA
WP_029492031.1\|145894_146095_-	hypothetical protein	NA	NA	NA	NA
WP_029492030.1\|146127_146541_-	hypothetical protein	NA	NA	NA	NA
WP_029492029.1\|146591_146873_-	hypothetical protein	NA	NA	NA	NA
WP_167337390.1\|146886_147039_-	hypothetical protein	A0A0E3Y6C8	Fusobacterium_phage	1.9e-14	91.7
WP_029492028.1\|147225_147933_+	helix-turn-helix transcriptional regulator	A0A0E3U270	Fusobacterium_phage	3.8e-113	86.8
WP_029492027.1\|147954_148815_+	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_167337391.1\|148913_149078_+	hypothetical protein	A0A0E3Y4W7	Fusobacterium_phage	1.9e-15	80.4
WP_058118885.1\|149738_150503_+	site-specific DNA-methyltransferase	A0A0E3U2R2	Fusobacterium_phage	6.3e-146	97.2
WP_029492025.1\|150657_151446_+	conserved phage C-terminal domain-containing protein	A0A1W6JNM1	Staphylococcus_phage	1.5e-20	39.2
WP_029492024.1\|151447_152248_+	ATP-binding protein	A6XMI1	Bacillus_virus	6.4e-08	27.1
WP_029492023.1\|152257_152632_+	hypothetical protein	A0A0E3Y4W5	Fusobacterium_phage	1.4e-34	75.0
WP_029492022.1\|152636_152972_+	VRR-NUC domain-containing protein	NA	NA	NA	NA
WP_167337392.1\|152968_153142_+	hypothetical protein	A0A0E3U2R0	Fusobacterium_phage	4.3e-18	80.0
WP_029492020.1\|153787_154042_-	hypothetical protein	NA	NA	NA	NA
WP_080654082.1\|154409_154904_+	ParB N-terminal domain-containing protein	A0A0E3U266	Fusobacterium_phage	2.1e-65	86.1
WP_058118818.1\|154900_155689_+	hypothetical protein	NA	NA	NA	NA
WP_029492017.1\|155691_156132_+	6-carboxytetrahydropterin synthase	A0A1U9WRB3	Streptococcus_virus	2.7e-16	38.0
WP_029492016.1\|156134_156740_+	7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	4.7e-19	30.6
WP_029492015.1\|156694_157258_+	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	4.3e-35	47.5
WP_032894434.1\|157241_157697_+	hypothetical protein	A0A0E3U2Q7	Fusobacterium_phage	2.7e-67	84.8
WP_029492013.1\|157686_158967_+\|terminase	PBSX family phage terminase large subunit	A0A0E3Y6C0	Fusobacterium_phage	3.2e-219	89.4
WP_029492012.1\|158969_160478_+	hypothetical protein	A0A0E3Y4W1	Fusobacterium_phage	1.4e-253	88.6
WP_029492011.1\|160481_161240_+\|capsid	minor capsid protein	A0A0E3Y641	Fusobacterium_phage	2.1e-133	91.7
WP_029492010.1\|161273_161888_+	hypothetical protein	A0A0E3U265	Fusobacterium_phage	4.2e-100	91.2
WP_029492009.1\|161900_162728_+	hypothetical protein	A0A0E3U2Q5	Fusobacterium_phage	3.6e-139	87.6
WP_029492008.1\|162772_163192_+	hypothetical protein	A0A0E3Y5G9	Fusobacterium_phage	5.6e-64	90.6
WP_029492007.1\|163178_163667_+	hypothetical protein	A0A0E3Y6H6	Fusobacterium_phage	6.8e-77	87.0
WP_029492006.1\|163668_164004_+	hypothetical protein	A0A0E3Y6B6	Fusobacterium_phage	1.5e-51	90.1
WP_029492005.1\|163996_164506_+	hypothetical protein	A0A0E3U264	Fusobacterium_phage	1.1e-85	93.5
WP_029492004.1\|164505_165492_+	hypothetical protein	A0A0E3U2Q2	Fusobacterium_phage	2.8e-154	83.5
WP_029492003.1\|165502_165916_+	hypothetical protein	A0A0E3Y4V9	Fusobacterium_phage	1.8e-67	86.9
WP_029492002.1\|165954_166380_+	hypothetical protein	A0A0E3Y638	Fusobacterium_phage	1.7e-71	93.6
WP_158405992.1\|166381_166522_+	hypothetical protein	NA	NA	NA	NA
WP_029492001.1\|166524_168276_+	hypothetical protein	A0A0E3Y5G6	Fusobacterium_phage	2.5e-206	64.2
WP_029491999.1\|168884_169226_+	hypothetical protein	A0A0E3Y6B2	Fusobacterium_phage	2.0e-51	90.3
WP_029491998.1\|169200_170049_+	hypothetical protein	A0A0E3Y4V7	Fusobacterium_phage	8.6e-128	89.7
WP_029491997.1\|170048_170696_+	hypothetical protein	A0A0E3U262	Fusobacterium_phage	2.6e-84	93.9
WP_029491996.1\|170705_171044_+	hypothetical protein	A0A0E3U2P9	Fusobacterium_phage	2.1e-53	93.8
WP_029491995.1\|171040_172180_+\|plate	baseplate J/gp47 family protein	A0A0E3Y634	Fusobacterium_phage	6.0e-193	90.2
WP_029491994.1\|172176_172782_+	hypothetical protein	A0A0E3Y5G1	Fusobacterium_phage	2.5e-81	87.4
WP_029491993.1\|172785_173475_+	hypothetical protein	A0A0E3Y6G8	Fusobacterium_phage	1.6e-111	85.5
WP_029491992.1\|173480_173810_-	hypothetical protein	NA	NA	NA	NA
WP_029491991.1\|173887_174634_+	hypothetical protein	A0A0E3U2P7	Fusobacterium_phage	2.4e-110	78.5
WP_029491990.1\|174774_175275_+	M15 family metallopeptidase	A0A0E3Y6B0	Fusobacterium_phage	2.2e-91	96.4
WP_029491989.1\|175286_175646_+	DUF1353 domain-containing protein	A0A0E3Y4V5	Fusobacterium_phage	4.2e-60	90.8
WP_032886650.1\|175646_176129_+\|holin	phage holin family protein	A0A0E3Y658	Fusobacterium_phage	2.1e-30	57.4
WP_029491987.1\|176168_176597_-	hypothetical protein	NA	NA	NA	NA
WP_005896104.1\|177076_177361_+	preprotein translocase subunit YajC	NA	NA	NA	NA
176756:176815	attR	NA	NA	NA	NA
WP_029491986.1\|177456_178485_+	N-acetylmuramoyl-L-alanine amidase	A0A067ZJB6	Vibrio_phage	1.5e-17	32.7
WP_029491985.1\|178489_178924_+	hypothetical protein	NA	NA	NA	NA
WP_005917881.1\|178948_180022_+	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	8.6e-08	41.2
WP_029491984.1\|180021_181173_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_029491983.1\|181153_182185_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_005917886.1\|182197_182746_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_005896116.1\|182959_183172_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_029491982.1\|183173_184067_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_005917893.1\|184199_184892_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	2.1e-23	46.7
WP_029491981.1\|184884_185769_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_029491980.1\|185782_186946_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_029491979.1\|186933_187611_+	thymidylate kinase	NA	NA	NA	NA
WP_029491978.1\|187812_188832_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_029491977.1\|188920_190306_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_029491976.1\|190334_192026_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_029491975.1\|192081_193893_+	DNA primase	A0A1S5RG58	Helicobacter_phage	2.6e-41	29.9
WP_032886500.1\|193964_195206_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	7.8e-37	36.2
WP_029491973.1\|195221_196046_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_058118819.1\|196042_196819_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_029491971.1\|196834_197398_+	hypothetical protein	NA	NA	NA	NA
WP_029491970.1\|197793_199218_-	peptide-binding protein	NA	NA	NA	NA
WP_005917928.1\|199373_199982_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_005896145.1\|199984_200374_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_029491969.1\|200382_201171_+	energy transducer TonB	NA	NA	NA	NA
WP_081038420.1\|201372_202659_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	5.8e-43	30.5

DBSCAN-SWA_2

226307 : 311965

107

Fusobacterium_phage(47.62%)

tail,portal,integrase,plate,tRNA,terminase,holin,protease,capsid

attL 230052:230067|attR 249472:249487

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162832564.1\|226307_226799_+	translation initiation factor IF-3	A0A1L2CV30	Pectobacterium_phage	2.5e-10	36.5
WP_005893833.1\|226876_227083_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_005895940.1\|227107_227458_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_029491771.1\|227852_229070_-\|integrase	site-specific integrase	A0A0K2CZ62	Paenibacillus_phage	1.6e-26	29.7
WP_058118821.1\|229151_229364_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_029491769.1\|229373_229871_-	dUTP diphosphatase	A0A0E3U2S3	Fusobacterium_phage	1.8e-40	52.0
WP_029491768.1\|229880_230072_-	hypothetical protein	NA	NA	NA	NA
230052:230067	attL	NA	NA	NA	NA
WP_029491767.1\|230074_230476_-	hypothetical protein	A0A0E3Y6C4	Fusobacterium_phage	4.0e-59	86.2
WP_029491766.1\|230472_231069_-	HNH endonuclease	A0A0E3T8L5	Staphylococcus_phage	1.8e-18	31.4
WP_029491765.1\|231070_231301_-	hypothetical protein	A0A2H4JB60	uncultured_Caudovirales_phage	8.0e-12	48.0
WP_029491764.1\|231321_232326_-	hypothetical protein	NA	NA	NA	NA
WP_029491763.1\|232327_233368_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	4.4e-25	27.4
WP_029491762.1\|233348_234092_-	N-6 DNA methylase	NA	NA	NA	NA
WP_029491761.1\|234101_234461_-	hypothetical protein	NA	NA	NA	NA
WP_051151459.1\|234479_235067_-	hypothetical protein	NA	NA	NA	NA
WP_029491759.1\|235020_235293_-	hypothetical protein	NA	NA	NA	NA
WP_029491758.1\|235270_235852_-	hypothetical protein	NA	NA	NA	NA
WP_029491757.1\|235851_236157_-	hypothetical protein	NA	NA	NA	NA
WP_029491756.1\|236165_236750_-	hypothetical protein	NA	NA	NA	NA
WP_029491755.1\|236806_237055_-	hypothetical protein	NA	NA	NA	NA
WP_029491754.1\|237059_237266_-	hypothetical protein	NA	NA	NA	NA
WP_029491753.1\|237274_238024_-	hypothetical protein	NA	NA	NA	NA
WP_167337393.1\|238140_238314_-	hypothetical protein	A0A0E3U2M4	Fusobacterium_phage	4.7e-09	61.8
WP_115720706.1\|238316_238925_-	hypothetical protein	A0A0E3U242	Fusobacterium_phage	1.0e-53	57.8
WP_029491751.1\|238938_239643_-	ParA family protein	A0A0E3Y677	Fusobacterium_phage	2.7e-82	60.9
WP_029491750.1\|239652_240045_-	hypothetical protein	NA	NA	NA	NA
WP_029491749.1\|240049_240271_-	hypothetical protein	A0A0E3Y5C9	Fusobacterium_phage	5.8e-28	84.1
WP_029491748.1\|240280_241258_-	hypothetical protein	A0A0E3U2M6	Fusobacterium_phage	4.0e-28	44.6
WP_167337394.1\|241278_241455_-	hypothetical protein	A0A0E3Y606	Fusobacterium_phage	7.2e-13	63.8
WP_029491747.1\|241568_241802_-	hypothetical protein	A0A0E3Y4U1	Fusobacterium_phage	1.7e-17	59.2
WP_029491746.1\|241812_242028_-	hypothetical protein	A0A0E3Y682	Fusobacterium_phage	4.7e-14	66.7
WP_029491745.1\|242291_242516_-	hypothetical protein	NA	NA	NA	NA
WP_029491744.1\|242859_243075_+	helix-turn-helix transcriptional regulator	Q331Y7	Clostridium_botulinum_C_phage	6.5e-08	40.3
WP_029491743.1\|243184_243946_+	hypothetical protein	NA	NA	NA	NA
WP_029491742.1\|244098_244821_+	hypothetical protein	NA	NA	NA	NA
WP_158406037.1\|244823_244982_-	hypothetical protein	NA	NA	NA	NA
WP_029491741.1\|245291_246011_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_051151458.1\|246164_246632_+	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	1.5e-09	28.9
WP_029491739.1\|246631_247375_+	hypothetical protein	NA	NA	NA	NA
WP_005887683.1\|247503_247689_+	hypothetical protein	NA	NA	NA	NA
WP_005887681.1\|247729_247975_+	hypothetical protein	NA	NA	NA	NA
WP_029491738.1\|247941_248130_+	hypothetical protein	A0A0E3U2N2	Fusobacterium_phage	1.0e-12	58.1
WP_029491737.1\|248129_249218_+	hypothetical protein	A0A0E3U246	Fusobacterium_phage	3.0e-125	61.3
WP_029491736.1\|249393_250710_+	DNA modification methylase	A0A0E3Y5D8	Fusobacterium_phage	5.4e-177	69.7
249472:249487	attR	NA	NA	NA	NA
WP_029491735.1\|250712_251393_+	hypothetical protein	A0A0E3Y615	Fusobacterium_phage	3.7e-65	60.1
WP_029491734.1\|251519_252110_+	hypothetical protein	A0A0E3Y4U4	Fusobacterium_phage	8.1e-08	26.1
WP_029491733.1\|252102_253923_+\|terminase	phage terminase large subunit family protein	A0A0E3U2N4	Fusobacterium_phage	1.3e-133	44.8
WP_029491732.1\|253919_254330_+	hypothetical protein	NA	NA	NA	NA
WP_029491731.1\|254338_255862_+\|portal	phage portal protein	A0A0C5AJ48	Bacteriophage	1.2e-100	42.6
WP_029491730.1\|255830_256865_+\|protease	Clp protease ClpP	A0A0C5AEN1	Bacteriophage	8.8e-34	42.5
WP_029491729.1\|256873_257200_+	hypothetical protein	NA	NA	NA	NA
WP_029491728.1\|257212_258241_+\|capsid	major capsid protein	NA	NA	NA	NA
WP_029491727.1\|258255_258492_+	hypothetical protein	NA	NA	NA	NA
WP_029491726.1\|258484_258811_+	hypothetical protein	NA	NA	NA	NA
WP_029491725.1\|258813_259359_+	hypothetical protein	NA	NA	NA	NA
WP_029491724.1\|259346_259898_+	hypothetical protein	NA	NA	NA	NA
WP_029491723.1\|259885_260227_+	hypothetical protein	NA	NA	NA	NA
WP_029491722.1\|260235_261684_+\|tail	tail protein	A0A059WKP9	Vibrio_phage	1.0e-72	33.1
WP_029491721.1\|261693_262203_+\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	3.5e-07	25.7
WP_029491720.1\|262215_262605_+	hypothetical protein	NA	NA	NA	NA
WP_029491719.1\|262786_265471_+\|tail	phage tail tape measure protein	H9A124	Staphylococcus_phage	6.7e-41	32.4
WP_029491718.1\|265451_265664_+\|tail	tail protein X	A0A2K9V353	Faecalibacterium_phage	2.1e-06	46.4
WP_029491717.1\|265645_266689_+	phage late control protein	NA	NA	NA	NA
WP_080654066.1\|266691_267219_+\|plate	phage baseplate protein	NA	NA	NA	NA
WP_029491715.1\|267215_267863_+\|tail	phage tail protein	NA	NA	NA	NA
WP_029491714.1\|267875_268157_+	hypothetical protein	NA	NA	NA	NA
WP_029491713.1\|268143_269244_+\|plate	baseplate J/gp47 family protein	A0A2K9V3Z9	Faecalibacterium_phage	2.9e-19	26.1
WP_029491712.1\|269240_269894_+\|tail	phage tail protein I	A0A0C5AJ63	Bacteriophage	1.3e-11	26.9
WP_029491711.1\|271153_271963_+	hypothetical protein	A0A0E3U258	Fusobacterium_phage	3.2e-23	44.3
WP_058118823.1\|271981_272596_+	N-acetylmuramoyl-L-alanine amidase	A0A0E3Y6A6	Fusobacterium_phage	1.7e-56	54.9
WP_058118824.1\|272609_272993_+	hypothetical protein	NA	NA	NA	NA
WP_029491479.1\|272979_273432_+	DUF1353 domain-containing protein	A0A0E3Y4V5	Fusobacterium_phage	2.2e-21	49.2
WP_032894170.1\|273468_273846_+\|holin	phage holin family protein	A0A0E3Y658	Fusobacterium_phage	7.9e-41	68.6
WP_029491477.1\|274168_274999_-	zeta toxin family protein	NA	NA	NA	NA
WP_029491476.1\|275000_275240_-	hypothetical protein	NA	NA	NA	NA
WP_029491475.1\|275393_276281_-	fructose bisphosphate aldolase	NA	NA	NA	NA
WP_029491474.1\|276433_278257_-	molecular chaperone HtpG	A0A1V0SAD6	Catovirus	2.9e-88	31.7
WP_029491473.1\|278407_278950_-	flavin reductase family protein	NA	NA	NA	NA
WP_029491472.1\|278961_279969_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_029491471.1\|279970_280357_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_029491469.1\|280836_281115_-	hypothetical protein	NA	NA	NA	NA
WP_029491468.1\|281244_282864_-	Na/Pi cotransporter family protein	A0A1B1ITU5	uncultured_Mediterranean_phage	7.9e-05	30.8
WP_029491467.1\|282930_283803_-	DUF2156 domain-containing protein	NA	NA	NA	NA
WP_029491466.1\|283815_285174_-	dipeptidase PepV	NA	NA	NA	NA
WP_029491465.1\|285322_286066_-	VacJ family lipoprotein	NA	NA	NA	NA
WP_029491464.1\|286055_287339_-	serine/threonine protein kinase	NA	NA	NA	NA
WP_029491463.1\|287350_291700_-	PolC-type DNA polymerase III	A0A0A7RWA3	Clostridium_phage	6.8e-27	40.4
WP_005918054.1\|291701_292265_-	RNA methyltransferase	NA	NA	NA	NA
WP_029491462.1\|292274_292991_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_029491461.1\|292987_293509_-	16S rRNA processing protein RimM	NA	NA	NA	NA
WP_005899450.1\|293517_293757_-	KH domain-containing protein	NA	NA	NA	NA
WP_005899449.1\|293774_294017_-	DUF4911 domain-containing protein	NA	NA	NA	NA
WP_029491460.1\|294025_294820_-	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA
WP_029491459.1\|294829_295357_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	3.7e-12	31.8
WP_029491458.1\|295648_296164_-	hypothetical protein	NA	NA	NA	NA
WP_029491457.1\|296587_297148_-	hypothetical protein	NA	NA	NA	NA
WP_029491455.1\|297710_298172_-	hypothetical protein	NA	NA	NA	NA
WP_005918104.1\|301198_301519_-	hypothetical protein	NA	NA	NA	NA
WP_058118827.1\|301515_302604_-	hypothetical protein	NA	NA	NA	NA
WP_029492436.1\|302734_303268_-	hypothetical protein	NA	NA	NA	NA
WP_029492435.1\|303248_303743_-	hypothetical protein	NA	NA	NA	NA
WP_029491433.1\|304367_305180_+	transketolase	NA	NA	NA	NA
WP_029491434.1\|305204_306134_+	transketolase family protein	NA	NA	NA	NA
WP_029491435.1\|306189_306957_-	DUF695 domain-containing protein	NA	NA	NA	NA
WP_029491436.1\|307694_308918_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.7e-82	43.0
WP_029491437.1\|308929_310168_+\|tRNA	histidine--tRNA ligase	A0A2I2L577	Orpheovirus	2.4e-22	26.5
WP_029491438.1\|310186_311965_+\|tRNA	aspartate--tRNA ligase	A0A2K9KZX5	Tupanvirus	3.5e-14	26.3

DBSCAN-SWA_3

528944 : 574342

Fusobacterium_phage(88.68%)

tail,portal,plate,terminase,holin,protease,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029491666.1\|528944_529751_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.5e-15	30.0
WP_029491665.1\|529740_530517_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.0e-15	28.1
WP_029491664.1\|530737_532252_+	diguanylate phosphodiesterase	NA	NA	NA	NA
WP_029491663.1\|532411_532549_+	NAD-dependent deacetylase	NA	NA	NA	NA
WP_029491662.1\|532545_533268_-	NAD-dependent protein deacylase	S5M4R0	Bacillus_phage	1.9e-27	31.8
WP_029491661.1\|533334_534753_-	recombinase family protein	NA	NA	NA	NA
WP_029491660.1\|534889_535177_-	hypothetical protein	A0A0E3Y667	Fusobacterium_phage	9.0e-29	63.2
WP_029491659.1\|535186_535579_-	hypothetical protein	A0A0E3Y6C4	Fusobacterium_phage	1.1e-56	81.5
WP_029491658.1\|535588_536164_-	hypothetical protein	A0A0E3U2M3	Fusobacterium_phage	2.9e-95	91.6
WP_032886349.1\|536229_536793_-	hypothetical protein	NA	NA	NA	NA
WP_029491656.1\|536776_537019_-	hypothetical protein	NA	NA	NA	NA
WP_029491655.1\|537023_537230_-	hypothetical protein	NA	NA	NA	NA
WP_167337395.1\|537342_537519_-	hypothetical protein	A0A0E3U2M4	Fusobacterium_phage	1.0e-14	75.9
WP_029491654.1\|537515_538142_-	hypothetical protein	A0A0E3U242	Fusobacterium_phage	8.6e-101	91.3
WP_023038057.1\|538134_538842_-	ParA family protein	A0A0E3Y677	Fusobacterium_phage	8.5e-121	92.8
WP_023038056.1\|538858_539233_-	hypothetical protein	A0A0E3Y6D7	Fusobacterium_phage	3.4e-60	94.3
WP_029491653.1\|539244_539454_-	hypothetical protein	A0A0E3Y5C9	Fusobacterium_phage	2.3e-26	79.7
WP_023038053.1\|540457_540715_-	hypothetical protein	A0A0E3U243	Fusobacterium_phage	2.8e-13	48.2
WP_167337396.1\|540724_540901_-	hypothetical protein	A0A0E3Y606	Fusobacterium_phage	2.9e-22	91.4
WP_029491651.1\|540910_541147_-	hypothetical protein	A0A0E3Y4U1	Fusobacterium_phage	9.9e-34	91.0
WP_023038050.1\|541136_541340_-	hypothetical protein	A0A0E3Y682	Fusobacterium_phage	6.3e-29	94.0
WP_008802820.1\|542074_542290_+	helix-turn-helix transcriptional regulator	A0A0E3U244	Fusobacterium_phage	1.0e-32	98.6
WP_029491650.1\|542413_543136_+	hypothetical protein	M1PL51	Streptococcus_phage	3.9e-20	31.2
WP_158405988.1\|543136_543289_-	hypothetical protein	NA	NA	NA	NA
WP_029491649.1\|543456_543903_+	hypothetical protein	NA	NA	NA	NA
WP_032886352.1\|543964_544384_+	DUF2513 domain-containing protein	A0A0E3Y611	Fusobacterium_phage	5.6e-72	99.3
WP_005899089.1\|544354_544594_-	hypothetical protein	A0A0E3U2N0	Fusobacterium_phage	1.2e-34	97.5
WP_005899088.1\|544744_544966_-	hypothetical protein	A0A0E3U245	Fusobacterium_phage	3.0e-32	98.6
WP_023037665.1\|545189_545654_+	transcriptional regulator	A0A0E3Y4U2	Fusobacterium_phage	4.8e-56	97.5
WP_029491647.1\|545898_546123_+	hypothetical protein	A0A0E3Y6E5	Fusobacterium_phage	5.5e-34	83.8
WP_023037662.1\|546101_546293_+	hypothetical protein	A0A0E3U2N2	Fusobacterium_phage	3.9e-28	93.7
WP_029491646.1\|546294_547383_+	hypothetical protein	A0A0E3U246	Fusobacterium_phage	1.9e-127	63.6
WP_029491645.1\|547560_548877_+	DNA modification methylase	A0A0E3Y5D8	Fusobacterium_phage	2.1e-245	95.2
WP_023037659.1\|548873_549545_+	hypothetical protein	A0A0E3Y615	Fusobacterium_phage	1.4e-109	92.4
WP_029491644.1\|549658_550102_+	hypothetical protein	A0A0E3Y4U4	Fusobacterium_phage	9.9e-51	72.4
WP_029491643.1\|550094_551864_+\|terminase	phage terminase large subunit family protein	A0A0E3U2N4	Fusobacterium_phage	5.7e-299	83.7
WP_008795341.1\|551860_552079_+	hypothetical protein	A0A0E3U247	Fusobacterium_phage	4.0e-21	69.4
WP_029491642.1\|552087_553641_+\|portal	phage portal protein	A0A0E3Y693	Fusobacterium_phage	2.4e-245	82.8
WP_029491641.1\|553624_554737_+\|protease	Clp protease ClpP	A0A0E3Y6E9	Fusobacterium_phage	2.7e-137	69.4
WP_029491640.1\|554746_555061_+	hypothetical protein	A0A0E3Y5E3	Fusobacterium_phage	2.4e-35	69.9
WP_029491639.1\|555072_556080_+\|capsid	major capsid protein	A0A0E3U2N5	Fusobacterium_phage	1.3e-138	73.1
WP_029491638.1\|556126_556363_+	hypothetical protein	A0A0E3U249	Fusobacterium_phage	1.2e-10	67.3
WP_029491637.1\|556374_556689_+	hypothetical protein	A0A0E3Y618	Fusobacterium_phage	1.2e-23	50.5
WP_029491636.1\|556688_557255_+\|tail	phage tail protein	A0A0E3Y4U7	Fusobacterium_phage	2.2e-39	48.5
WP_029491635.1\|557254_557725_+	hypothetical protein	A0A0E3Y698	Fusobacterium_phage	3.3e-44	55.7
WP_032886364.1\|557795_558077_+	hypothetical protein	A0A0E3U2N7	Fusobacterium_phage	8.8e-13	50.0
WP_029491633.1\|558066_559467_+\|tail	phage tail protein	A0A0E3U251	Fusobacterium_phage	6.2e-224	79.2
WP_029491632.1\|559476_560010_+\|tail	phage major tail tube protein	A0A0E3Y6F4	Fusobacterium_phage	9.3e-80	82.5
WP_029491631.1\|560018_560357_+	hypothetical protein	A0A0E3Y5E7	Fusobacterium_phage	6.8e-36	67.3
WP_029491630.1\|560531_560786_+	hypothetical protein	NA	NA	NA	NA
WP_029491629.1\|560856_563496_+\|tail	phage tail tape measure protein	A0A0E3U2N9	Fusobacterium_phage	7.8e-260	61.9
WP_008795326.1\|563485_563695_+	hypothetical protein	NA	NA	NA	NA
WP_032886356.1\|563697_564804_+	phage late control D family protein	A0A0E3U253	Fusobacterium_phage	1.9e-135	68.2
WP_029491627.1\|564796_565330_+\|plate	phage baseplate assembly protein V	A0A0E3Y4V1	Fusobacterium_phage	1.7e-68	71.8
WP_029491626.1\|565326_565713_+\|tail	phage tail protein	A0A0E3Y6A2	Fusobacterium_phage	1.8e-48	71.1
WP_029491625.1\|565712_566027_+	hypothetical protein	A0A0E3Y6F8	Fusobacterium_phage	2.2e-28	61.2
WP_029491624.1\|566019_567117_+\|plate	baseplate J/gp47 family protein	A0A0E3U2P1	Fusobacterium_phage	4.5e-161	76.5
WP_029491623.1\|567109_567745_+\|tail	phage tail protein I	A0A0E3U255	Fusobacterium_phage	3.7e-91	79.1
WP_029491621.1\|568828_569638_+	hypothetical protein	A0A0E3U258	Fusobacterium_phage	6.5e-24	44.9
WP_029494711.1\|569663_570278_+	N-acetylmuramoyl-L-alanine amidase	A0A0E3Y6A6	Fusobacterium_phage	4.4e-57	54.9
WP_029494712.1\|570291_570675_+	hypothetical protein	NA	NA	NA	NA
WP_029492121.1\|570661_571114_+	DUF1353 domain-containing protein	A0A1B2ICK0	Erwinia_phage	8.9e-15	44.2
WP_029492122.1\|571129_571519_+\|holin	phage holin family protein	A0A0E3Y658	Fusobacterium_phage	1.9e-45	80.5
WP_029492123.1\|571591_572488_+	hypothetical protein	NA	NA	NA	NA
WP_029492125.1\|573442_574342_+	Abi family protein	A0A059NT88	Lactococcus_phage	4.5e-42	37.6

DBSCAN-SWA_4

812258 : 818344

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029492286.1\|812258_812732_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.3e-24	46.9
WP_005916677.1\|812993_813707_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	2.5e-43	42.8
WP_029492287.1\|813752_815102_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	2.1e-51	31.3
WP_029492288.1\|815197_816217_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	1.7e-66	43.8
WP_005916671.1\|816204_816789_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.0e-23	37.4
WP_029492289.1\|816829_818344_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.9e-59	43.0

Anti-CRISPR protein detection

Acr_ID: NZ_CP013334.1|WP_167337396.1|540724_540901_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP013334.1|WP_029491651.1|540910_541147_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP013334.1|WP_023038050.1|541136_541340_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP013334.1|WP_005899089.1|544354_544594_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP013334.1|WP_005899088.1|544744_544966_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP013334.1|WP_167337396.1|540724_540901_-|hypothetical-protein

540724_540901_-

58 aa aa

528944-574342

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP013334_2	Unclear	2.1\|583254\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583254-583290	37	555212-555176
NZ_CP013334_2	Unclear	2.3\|583388\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583388-583424	37	537211-537247
NZ_CP013334_2	Unclear	2.16\|584256\|36\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	584256-584291	36	548675-548640

1. spacer 2.1|583254|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 555212-555176, mismatch: 0

gcttttgtatattctaaaattatttcttcagttggaa	CRISPR spacer
gcttttgtatattctaaaattatttcttcagttggaa	Protospacer
*************************************

2. spacer 2.3|583388|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 537211-537247, mismatch: 0

atttttcttatttctagcatcatgtcctcctgttttc	CRISPR spacer
atttttcttatttctagcatcatgtcctcctgttttc	Protospacer
*************************************

3. spacer 2.16|584256|36|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 548675-548640, mismatch: 0

aataaatctaaaacattccaattttctttgcttgaa	CRISPR spacer
aataaatctaaaacattccaattttctttgcttgaa	Protospacer
************************************

NZ_CP013334.1|WP_029491651.1|540910_541147_-|hypothetical-protein

540910_541147_-

78 aa aa

528944-574342

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP013334_2	Unclear	2.1\|583254\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583254-583290	37	555212-555176
NZ_CP013334_2	Unclear	2.3\|583388\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583388-583424	37	537211-537247
NZ_CP013334_2	Unclear	2.16\|584256\|36\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	584256-584291	36	548675-548640

1. spacer 2.1|583254|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 555212-555176, mismatch: 0

gcttttgtatattctaaaattatttcttcagttggaa	CRISPR spacer
gcttttgtatattctaaaattatttcttcagttggaa	Protospacer
*************************************

2. spacer 2.3|583388|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 537211-537247, mismatch: 0

atttttcttatttctagcatcatgtcctcctgttttc	CRISPR spacer
atttttcttatttctagcatcatgtcctcctgttttc	Protospacer
*************************************

3. spacer 2.16|584256|36|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 548675-548640, mismatch: 0

aataaatctaaaacattccaattttctttgcttgaa	CRISPR spacer
aataaatctaaaacattccaattttctttgcttgaa	Protospacer
************************************

NZ_CP013334.1|WP_023038050.1|541136_541340_-|hypothetical-protein

541136_541340_-

67 aa aa

528944-574342

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP013334_2	Unclear	2.1\|583254\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583254-583290	37	555212-555176
NZ_CP013334_2	Unclear	2.3\|583388\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583388-583424	37	537211-537247
NZ_CP013334_2	Unclear	2.16\|584256\|36\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	584256-584291	36	548675-548640

1. spacer 2.1|583254|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 555212-555176, mismatch: 0

gcttttgtatattctaaaattatttcttcagttggaa	CRISPR spacer
gcttttgtatattctaaaattatttcttcagttggaa	Protospacer
*************************************

2. spacer 2.3|583388|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 537211-537247, mismatch: 0

atttttcttatttctagcatcatgtcctcctgttttc	CRISPR spacer
atttttcttatttctagcatcatgtcctcctgttttc	Protospacer
*************************************

3. spacer 2.16|584256|36|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 548675-548640, mismatch: 0

aataaatctaaaacattccaattttctttgcttgaa	CRISPR spacer
aataaatctaaaacattccaattttctttgcttgaa	Protospacer
************************************

NZ_CP013334.1|WP_005899089.1|544354_544594_-|hypothetical-protein

544354_544594_-

79 aa aa

528944-574342

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP013334_2	Unclear	2.1\|583254\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583254-583290	37	555212-555176
NZ_CP013334_2	Unclear	2.3\|583388\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583388-583424	37	537211-537247
NZ_CP013334_2	Unclear	2.16\|584256\|36\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	584256-584291	36	548675-548640

1. spacer 2.1|583254|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 555212-555176, mismatch: 0

gcttttgtatattctaaaattatttcttcagttggaa	CRISPR spacer
gcttttgtatattctaaaattatttcttcagttggaa	Protospacer
*************************************

2. spacer 2.3|583388|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 537211-537247, mismatch: 0

atttttcttatttctagcatcatgtcctcctgttttc	CRISPR spacer
atttttcttatttctagcatcatgtcctcctgttttc	Protospacer
*************************************

3. spacer 2.16|584256|36|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 548675-548640, mismatch: 0

aataaatctaaaacattccaattttctttgcttgaa	CRISPR spacer
aataaatctaaaacattccaattttctttgcttgaa	Protospacer
************************************

NZ_CP013334.1|WP_005899088.1|544744_544966_-|hypothetical-protein

544744_544966_-

73 aa aa

528944-574342

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP013334_2	Unclear	2.1\|583254\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583254-583290	37	555212-555176
NZ_CP013334_2	Unclear	2.3\|583388\|37\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	583388-583424	37	537211-537247
NZ_CP013334_2	Unclear	2.16\|584256\|36\|NZ_CP013334\|PILER-CR,CRISPRCasFinder,CRT	584256-584291	36	548675-548640

1. spacer 2.1|583254|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 555212-555176, mismatch: 0

gcttttgtatattctaaaattatttcttcagttggaa	CRISPR spacer
gcttttgtatattctaaaattatttcttcagttggaa	Protospacer
*************************************

2. spacer 2.3|583388|37|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 537211-537247, mismatch: 0

atttttcttatttctagcatcatgtcctcctgttttc	CRISPR spacer
atttttcttatttctagcatcatgtcctcctgttttc	Protospacer
*************************************

3. spacer 2.16|584256|36|NZ_CP013334|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013334 position: 548675-548640, mismatch: 0

aataaatctaaaacattccaattttctttgcttgaa	CRISPR spacer
aataaatctaaaacattccaattttctttgcttgaa	Protospacer
************************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013334

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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