CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013195	Prevotella enoeca strain F0113 chromosome, complete genome	12 crisprs	DEDDh,RT,cas6,cas5,cas3,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	1	1	3	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013195_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013195_1

54859-54967

Orphan

Consensus_repeat	Method
TTCGCCCGCGGGCGAAACACTGTTTTT	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP013195_1

>merge|NZ_CP013195|1|54859-54967|CRISPRCasFinder
TTCGCCCGCGGGCGAAACACTGTTTTTTCGATTTTGAAGCTTTCGCCCGCGGGCGAAGCGCTGTTTTTGTCATTTTGAAGCTTTCGCCCGTGGGCGAAACACTGTTTTT

>NZ_CP013195|1|1|54859-54967|CRISPRCasFinder
TTCGCCCGCGGGCGAAACACTGTTTTT	TCGATTTTGAAGCTTTCGCCCGCGGGCGAAGCGCTGTTTTTGTCATTTTGAAGCT
TTCGCCCGTGGGCGAAACACTGTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013195.1\|WP_025065394.1\|40642_41107_-\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NZ_CP013195.1\|WP_025065396.1\|42318_43113_-\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|224315
NZ_CP013195.1\|WP_025065474.1\|67744_68017_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP013195.1\|WP_060544079.1\|49543_51310_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|227203
NZ_CP013195.1\|WP_025065475.1\|68144_69488_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_CP013195.1\|WP_060544078.1\|47234_49103_-\|beta-galactosidase	unknown	unknown	gnl\|CDD\|366567
NZ_CP013195.1\|WP_025065395.1\|41360_42299_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP013195.1\|WP_025065470.1\|60449_62015_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293762
NZ_CP013195.1\|WP_060544077.1\|43413_47238_-\|DUF5110-domain-containing-protein	unknown	unknown	gnl\|CDD\|269882
NZ_CP013195.1\|WP_025065471.1\|62410_65401_-\|protein-translocase-subunit-SecDF	unknown	unknown	gnl\|CDD\|237276
NZ_CP013195.1\|WP_025065473.1\|66602_67532_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP013195.1\|WP_025065466.1\|55169_56798_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_060544080.1\|52513_53719_+\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP013195.1\|WP_025065397.1\|51467_52484_+\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236609
NZ_CP013195.1\|WP_025065472.1\|65518_66601_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197318
NZ_CP013195.1\|WP_082627443.1\|53822_54743_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065467.1\|56817_57039_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065468.1\|57430_58351_-\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP013195.1\|WP_025065469.1\|58641_60417_+\|right-handed-parallel-beta-helix-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379079
NZ_CP013195.1\|WP_025065393.1\|38351_40547_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947

Protein	Function_ID	Function_description	E-value
NZ_CP013195.1\|WP_025065394.1\|40642_41107_-\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	2.50159e-70
NZ_CP013195.1\|WP_025065396.1\|42318_43113_-\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|224315	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones].	3.52923e-43
NZ_CP013195.1\|WP_025065474.1\|67744_68017_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.6908e-37
NZ_CP013195.1\|WP_060544079.1\|49543_51310_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|227203	COG4866, COG4866, Uncharacterized conserved protein [Function unknown].	1.28481e-48
NZ_CP013195.1\|WP_025065393.1\|38351_40547_+\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_CP013195.1\|WP_025065475.1\|68144_69488_-\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	2.70674e-58
NZ_CP013195.1\|WP_060544078.1\|47234_49103_-\|beta-galactosidase	gnl\|CDD\|366567	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35.	1.8337e-120
NZ_CP013195.1\|WP_025065470.1\|60449_62015_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293762	cd16143, ARS_like, uncharacterized arylsulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	1.44896e-129
NZ_CP013195.1\|WP_060544077.1\|43413_47238_-\|DUF5110-domain-containing-protein	gnl\|CDD\|269882	cd06596, GH31_CPE1046, Clostridium CPE1046-like. CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.	2.26769e-179
NZ_CP013195.1\|WP_025065471.1\|62410_65401_-\|protein-translocase-subunit-SecDF	gnl\|CDD\|237276	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed.	0
NZ_CP013195.1\|WP_025065473.1\|66602_67532_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	3.44173e-32
NZ_CP013195.1\|WP_060544080.1\|52513_53719_+\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP013195.1\|WP_025065397.1\|51467_52484_+\|phosphate-acetyltransferase	gnl\|CDD\|236609	PRK09653, eutD, phosphotransacetylase.	3.9014e-154
NZ_CP013195.1\|WP_025065472.1\|65518_66601_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197318	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps, proteins.	6.24061e-74
NZ_CP013195.1\|WP_025065395.1\|41360_42299_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	9.35387e-08
NZ_CP013195.1\|WP_025065469.1\|58641_60417_+\|right-handed-parallel-beta-helix-repeat-containing-protein	gnl\|CDD\|379079	pfam13229, Beta_helix, Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.	0.00319365
NZ_CP013195.1\|WP_025065468.1\|57430_58351_-\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	1.02511e-57

>NZ_CP013195.1|WP_082627443.1|53822_54743_-|hypothetical-protein
MELKDIRKSHLQNMEHFQFAGHVLAMCKTANVEKLNPLLAPLEAAIGKEDEALNLPQKMEGTRELSELDSARDKAYRVLTLLLDACLLDTNKNIAGPAQMLRDILDRYPDTAAQNYAKETAMIQNLLTDLNTPEAKLSVGRTNLQGAVARLTAANAAFDKCFQARFKKTIPTGTFDIKALRANTDAALNAVLRRIDSLDDLEPSAKITALISEYNAVIDNRHTLLANRAATNKARAERQLEELRKELAPLIRKFEEANGIAPNVLTFTGKTKGTGKKKSYELAYTTDPKRTLWVVREKDELKEVKE
>NZ_CP013195.1|WP_060544080.1|52513_53719_+|acetate-kinase
MKILVLNCGSSSIKYKLYDMNDMSVLAAGGVERIGLDEAFIKVTLPDGEKKKIMHDMPDHKEGVNFVFKCLLDPEIGAIKSLDEIDAVGHRIVQGGDKFCDSIIVDKQVEAGIEELCDLAPVHNAGHLRGIRAVDALMPKTPQVCVFDNAFHSTMPDYAYLYAIPYHLYEKYHVRRYGFHGTSHRYVSQRVCEYLGRDIKTQRIITCHIGNGASISAVKFGKCVDTSMGLTPLAGVMMGSRSGDIDPSAVTYLMEKLGKQPQEMADYLNKESGVVGITGISSDMREIESAAAEGNERAQLALNMYNYRIKKYIGAYAAAMGGVDIIVWTAGVGENQTGTRLDACSDLEFLGIKIAPEANKVRGKEAIISTPDSKVTVCVIPTDEESVIARDTMKLVQEAKK
>NZ_CP013195.1|WP_025065397.1|51467_52484_+|phosphate-acetyltransferase
MDLLQQIVDRAKSNRQRIVLPEATEERTLRAADRALRDEIADIILIGNPTEIHKLAEAWELSNIGKATIVDPLNNPKAEEYAALLAELRKKKGMTLAQARELVKNPLYLGCMIIKTEGADGQISGALSTTGETLRPALQIIKCAPGVTCVSGAMLLITKAKQYGEDGIVVMGDVAVTPMPDADQLSQIAICTAQTAQCVAGFAEPRVAMLSFSTKGSASHEVVDKVVEATRLTKQRAPELKIDGELQADAALVPAVGQKKAPGSAIAGNANVLIVPNLEVGNIGYKLVQRLGDAIAIGPILQGIARPVNDLSRGCSIDDIYYMIAITACQAQDAKLTH
>NZ_CP013195.1|WP_060544079.1|49543_51310_-|GNAT-family-N-acetyltransferase
MIQFKDLSTADRTLIQQFTLYGERQNCDLSFSNLISWRFLYNTQFAIINDYLVFRFHTGRHLAYMMPIPKPQLTDDGSYRVQPCDECSVEVIRAIRDDSIAMGHPFLMLGVCNYMVDLIELSFPDTFTIEPNRDFADYIYTREKLVNLSGKKLQSKRNHINKFKSLYPQYVYRPLTEDMIPQCLALEKQWRQISKDDTDEQDLDESLSIELRSMTRAFHRWNRLGLTGGTIWVDDQLVAFTFGCPINQITFDVCVEKADVNYEGAFSIINQEFVKHLPEQYFYINREEDMGNEGLRRAKLSYQPDILLEKNTVMEKHPLREFEDQDRILQETRDLWKLVFNDSDTFIDLYFSRVYKPKYNITCQLNHHVVAALQTLPYTLLYHGQELPTAYISGVSTHPDYRHQEIGNNLMRQAHFDLFYKNVVYAALIPAEPWLYEWYAKCGYAQQITCLPNPESLLATDFAVFDRWQREKTCFLLHDQANFETAKEDILLQGIDAVHSEEPVQGMIRVINALKALRSYVAQNPSLQCTIRIENDHDIPMNNAYYVISEGKVRQTDEPDTDARRLSINELADLIFQNEHAEMNLMMN
>NZ_CP013195.1|WP_060544078.1|47234_49103_-|beta-galactosidase
MRHLKLLLAAVLLLIAGQTMAGKPVKHSFSIANGNFLYDGKPIQIHSGEMHYARVPAPYWRHRLRMMKAMGLNAVATYVFWNHHEVAPGVWDWKSGNRNLRTFVKTAGEEGMMVILRPGPYCCAEWDFGGYPWWLQNTKGLVIRTDNRPFLDSCRVYINQLADQLRDQQITKGGPIIMVQAENEFGSYVAQRKDIPLETHKAYSAKIRQTLLDAGFDVPMFTSDGSWLFEGGTIEGALPTANGEANVDKLKQVVNEYHNNQGPYMVAEFYPGWLDHWAEPFPKVSTESVVKQTRKYLDGGVSFNYYMVHGGTNFGFTAGANYNSATNILPDMTSYDYDAPISEAGWATEKYNAIRELLIKRVSYKVPPVPARIPVVKLEPIQLNKTADVFQMLGKMKPVENETPLTFEALNQGQGYVLYRRHFNQPISGLMKVSGLADYALVYINGKKLGELNRVIDRDSIEVDVPFNGVLDILVENMGRINYGARITKNHKGITGPVTIDGNEITSGWQMYQLPMMTVPDVDTLPRGYNSGLPVLYSGTFEVAAPGDTFLDMEHWGKGIVFVNGINLGRYWRVGPQQTLYLPGCFLKKGKNEIVIFEQQNDEKKTQVTTVTTPVLEKLVKE
>NZ_CP013195.1|WP_060544077.1|43413_47238_-|DUF5110-domain-containing-protein
MKRILYTICGLLVSVLQVSAAVVTADDSVKDIRQINASAVEVLYRDGHRLTIDFYSDNIFRLFQDNHGGIVRDPAADPPAKILVDRPRKPVGTLSLTRNERSLTVSSPCVCIDFDRKSALFRITDLRNGRTVVSQASPVQFKRNRYTMAFCEQKDEYFYGGGVQNGRFSHKGQQVEIVNTNSWTDGGVASPAPFYWSTGGYALMGYTFAPGRYDFGATQKGVVGISHDSPYLDIFIFVDNDPASLLADYYQLTGRPVLLPKFAFYEGHLNAYNRDFWKTSDNPAKGILMEDGKRYVESQKDNGGIRESLNGERDNYQFSARAVIDRYHKHDMPLGWLLPNDGYGAGYGQTETLDGNIENLKNLGRYARKHGVEIGLWTQSKLHPVDGVSALLQRDIVKEVRDAGVRVLKTDVAWVGDGYSFGLNGIADVAQIMPYYGSNARPFIITLDGWAGTQRYAGVWTGDQTGGKWEYIRFHIPTYVGAGLSGLSNVTSDMDGIFGGNDIAVNIRDFQWKTFTPMQLNMDGWGATPKYPHILGEPAASINRSYLKFKSMLLPYTYSVAREACFGKPLMRAMFLEIPNDYTHGSDTRYQYMYGPSFLVAPIYQSTRPDSLGNDIRNGIYLPQGRWIDYFNGDVFEGGQLINNYDAPLWKLPLFVRPGAILPMAKPSNNPSQIDYRTRIYELYPDGKSSFTEYDDDGTTDAYLNGAFSETLIESSSTSNGRCDITVHPTTGHFREMAKNKSTLFVVNLTARPQAIRAFIGGKRNRISLQAVSSREALLRTDNAWFYDAEPQLNRFATPGSDFAKVKITKNPQLLVHLQATDITRNSVSLHIDGYRFAVADKLKRQTGSLIPPREAGVKPADTTPYALTPTWKRVPGADYYEIEFNGMTYSTIRDTSLLFTDLKPETTYIYKVRAVNKSGVSAWSPFEARTLADPLADALHGITGKSSVSDAEDHEISRLFDFSDKGDIWFATMDKSGKPFELTIDLHAVCQLDKLQYLPREGGGAGTFLTGSIAVSADGRQWSTPVPFSWTADDAAKETIFENHPTARYIRLTVTDAVRKYLSGREIYVFKVPGTRPLIPGDINQDGKIDQADLTSYMNYTGLRRGDPDFDGYISKGDINGNGLIDAADISEVAVKLDGGVSPDGRKPAGSIVIETDKARYEPGDDIRLSVRGQALKAVNALNLILPYSEKEMTFTRIEPLAVKDMQNMTNDRLHKDGSKVLYPTFVNIGDRSILNGDTPLFVIHFKALRRVKLPQVKFDALLVSKSLETIEQ
>NZ_CP013195.1|WP_025065396.1|42318_43113_-|ADP-ribosylglycohydrolase-family-protein
MLGAIIGDIIGSRFEFGNAPRKGFELFTNECYFTDDTICTIAVADAALNERSYQEALLEWCARYPQPMGGYGYRFESWLHSPDSASTDSFGNGSAMRVSSIGWLFDDFHTVLDEAARSAKVSHSHPQGIKGAQCVAASIYWLRTCRVPKDELETAVNRRFGYEIPSLRDVYKIGSEGHFDATCQETVPMALRCFLHSESFEDAIRLAVLAGGDTDTKAAITGSIAEAHYDLPEKLIEQTCTRLPKEMLAVLEQFYNKIETNIHL
>NZ_CP013195.1|WP_025065395.1|41360_42299_-|WYL-domain-containing-protein
MRHDKLKRELELLILLTRNTDYTVQDLCKALGVTTRNLYYYLEFLRDAGFEVIKHGYYYRLGRHSKFFMRLREGIDFTENEAVFIRRLLERADKNNPLVPHLQAKLDRFYDFRVTNDPQMLSRSAHNVEKLIDAIKFKSVVRLRDYSSPHSCTVTDRFVEPFELMNGNNDVRCYEILSGMNKTFKVARMRDVEIVDAAWGNEARHRRVFTDVFMFSGEERFGIDLLLGQLSCNLFTEEYPQAANILVPASDSRWHLHLDVCSYTGIGRFVLGLYDDIEVLGDTGFQRYLKAKIHDFQTKSAHSIQRLSALRT
>NZ_CP013195.1|WP_025065394.1|40642_41107_-|MaoC-family-dehydratase
MEKLVINSYEEFAAHLGEDLGVSEWLKIDQERINLFADATLDHQWIHVDTARAQRESQFKSTIAHGYLTLSLLPYLWNQIVDVRNIKMLVNYGMDQMRFGQAVVTGSRVRLSTKLHAISNLRGICKTEIAFKIEIEGQRKPALEGIATFLYYFE
>NZ_CP013195.1|WP_025065393.1|38351_40547_+|ribonuclease-R
MKKEKKGGKRMNKQQLTDRLVSFFQSQPDKTFTFKDIFRSLKLTTHPLKMLAIDTMEELAWDDVLTKVSDNTYRLSRMQQVAEGRFMRKANGKNVFIPDEGGSPMFISERNSMSALNGDRVKVSVMARRRNHIREGEVIEILQRAKDRFVGRLRVDKNIAFLVTQENLYVHDIIIPKRKLKGGKTDDKAIVKVTQWPDSDHKNIIGEVVDIIGQSGDNDTEMNTILAQYGLPYRYPKAVEDAAEKISGVVTPADLAQREDFRTTFTCTIDPKDAKDFDDALSIKRLMDGTWEVGVHIADVSHYVAEGSIIDKEAVKRATSIYLVDRTIPMLPERLCNFICSLRPNEEKLAYSVIFVLNEDADVKSFRIVHTVIKSDRRYAYEEVQELLERNGVIDGTGQPAPSAPRGGYQGENAAALIQLDKLAKKLRERRFKNGAVKFDREELHFDVDDQGRPVRCYFKRSKDANKLIEEFMLLANRTVAESIGKAKRGKMAKTLPYRVHDQPDPQKLETLREFVVKFGYKIKTAGTKGETARSLNKLMSECEGRNEQNLIQMVALRAMMKAHYTIHNIGHFGLAFDYYTHFTSPIRRYPDLMVHRLLTRYAAGGRSANKDHYEELCEHCSDMEQVAQNAERDSIKYKMVEFMSDKLGEEFDAHISGIQAFGIYCEIDENHCEGLVPMRDLDDDYYEFDEKNYCLVGRRHHHRYQLGDAVRIKVAQANLEKRQLDFVLVE
>NZ_CP013195.1|WP_025065466.1|55169_56798_-|hypothetical-protein
MKNYMNMKTNITSIFAAALVLFTASCANEETTKQDANQETTAGTNFVGGSAVKTRTSLDVTLPGGTTIDYFWEPNDKIWTADGATGTAQITAKSATANFRMSKAYNTPTVDVYYPGVNATAYNQVTIATAQTQTAPNSTKHLGEAGDCGVATAHQQSDNSYKFDLDHKASYLCLLPRTPNGLVSTYITQVKITSDNNIAGTYTLTKTGLTGSGSSNTITLTTPGDGSPAIGPYNYWTGATTVPAPGFPLNNAATSQATNAMYVVIAPGTHALTIEYTLYDTGTQKGGVVKKTIASAAYAPNTLYPLTANINPVNYPNNIYYMWDAADGQNYWNGYENVIPDMNDKKNQNDYPKTNADPRWYNETATFPAQATRSAKNYPNVNEWAWYTSQDGDPHYDNTTLWCLMGHLYTKGMWIRKQSVIAAKTGKTIVQLKAAAPDGIDYTTQTSGFMPSYRTLPTGLPTPIGDYFFLPALGNTRIYLVDVGNYGHYYSSSTGPGSPMNLYTVGFHTNEISIGITAGNQRDNGHPMFNTTDEDKYRPNGL
>NZ_CP013195.1|WP_025065467.1|56817_57039_-|hypothetical-protein
MKQKQLESRVYAKPAVTINPVDTEALLASGSKFGGGHNQGHVGGGGGDAKQGWFDEEDEDESPSSTSEENLWD
>NZ_CP013195.1|WP_025065468.1|57430_58351_-|YitT-family-protein
MTRKKQLGELYDYLLIALAMFIGSAGWVLFLLPNHITLGGLPGISSVLYWGLGIPVTLSYLVINLILLGVALKILGWRFCIKTIWAVLTFTLSTSVLQNLMGGTGLLTDQPFMSTVIGGCFLGVGVGLGLSGNGSTGGSDVVAAMINKYHDISLGTGILLCDIVIVTSSYLVLKDWNQVIYGYVVLILSSICVDHVVNRLRRSVQFFIISNKYKEISRAINTTADRGCTILNGQGVYSGREVRMLFVLARQSESSKIFSLIDDIDPGAFVSQSAVIGVYGLGFDKFKRSKKSVKPQPQPVAAPTEN
>NZ_CP013195.1|WP_025065469.1|58641_60417_+|right-handed-parallel-beta-helix-repeat-containing-protein
MRHHRLLTVWLTCLTGLISIQAQRVFKLADYGVRPNQKTDVSQKVYRALADIRQKTSPGDSIILRFEAGEYHFHARKAAAKTYFISNHDQVKTHRVGLVIENMAHVCIDGGGARFIFHGRMLPVALVNSHRCSLNNFSIDFENPWIAQIKVLKNEGADGITFRISPQVKYRINAGELETYGEGWTQRLLMGMAFDPQSRHPIYHTSDISFSSKDIRVMSRNVFHAPHFIHEALIPGTIVALRSWERPSPGIFLSGNTHTEIHHVKVHYAQGMGLLAQRCDGIVLDNFGVCLKGDDDPRYFTTQADATHFSQCRGRIDSHGGIYEGMMDDAINVHGIYLKVMQQTDRRTVIARYMHHQAWGFNWGQVGDSIQLIAAKTMDVIGRNTIERIEPTDAVDGIGMKEFRIVFRDSLPSYNLNASEIGLENLTWTPEVHFYDNLIRNNRARGALFSSPRKTIVEHNLFDHTAGSGILLCGDCNGWYESGACRDITIRDNIFINNLTSLYQFTNAIISIFPVIPDLAHQQSYYHGGRSRAIRIEHNVFRTFDSPILYARSVDGLLFKNNIIEPNKDFLPLLPGKSRFVLEHVTRAEIE
>NZ_CP013195.1|WP_025065470.1|60449_62015_+|sulfatase-like-hydrolase/transferase
MNNNKLLTTALLMPALAPTLTAEAKQIKNTKTVTDDRPNVIIILADDLGYGDLACYGARNVQTPHVDRLARRGIRFTAGHAVAAISTPSRYSLLTGEYAWRRPDTDIAPGNAAMIIRPSQFTMADMFQNAGYATCAIGKWHLGLGDKEGEQDWNAPLPQALGDIGFDYHYIMAATADRVPCVFIENGRVANYDPSAPIEVSYHRNFKGEPTGRSNPELLYNQRSSHGHDMSIVNGIGRIGYMKGGGRALWKDENIADSIVAHAVGFIKRHRDRPFFMYLATNDVHVPRFPHNRFRGHNAMGLRGDAIVQFDWTVGQITQTLDRLGLTDNTLIILTSDNGPVVDDGYADRAEELLNGHKPAGPFRGNKYSAFEGGTAIPLIVSWPRRVAQGQQSGALVSQIDLMASLGRLVKAVFPKGSAPDSRDCLGTFLGENKTNRPFVIEQSNTRVLSVRTPQWKYIEPNDGPKMIPWGPKIETGNLATPQLYDMTASPFEQTNVAESHPRVVFELQNILRRAREGKGK
>NZ_CP013195.1|WP_025065471.1|62410_65401_-|protein-translocase-subunit-SecDF
MQNKGIVIVTAVLLTLASIFYLSFSVATHYYDSQAAKLKDPIAQQDYKDSVKYLGIYSYQKCLETQIGLGLDLKGGMNVILEVSVPDVIETLADHKTDPAFVKSMKQAKAEEETSQADFISLFTKYYHQNAPGHHLAEIFATQQLQGKVSPQSSDSEVEKVLRSEVQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGVREPERMRKLLQGSANLEFWETYNSDEIIPYLQQIDQRLANGESEQTDTANVQKETAEKAPEAKPKFQIKGANTANVNAANASSDAQMAAAKKQHPLLAMLQPTNGQLSMVGLANVRDTAAINKIIHSAVAKQILPSDVKLLWGAKPTDMLQGAKNVYELHALKVTSSNGRAPLEGDVVTDAKDQFNPTTGQPEVSMSMNSEGARRWAALTKANVGKAIAVVLDNVVYTSPRILGEIDGGQSSITGHFTIEDTKDLANTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIISFVIAFVVLMLYMVLMYDFIPGMMANCALLVNLFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERTKEELKAGKGIKQAIAAGYSNAFSAIFDSNLTSIITGIILYVFGTGPIRGFATTWIIGILCSFFTAVYLTRLVYENRLKHDKWLKLDFTTRFSRNLMQNVHFPFMSIYKRTFALVSVALVVFAISFVVRGLSKSIDFTGGRNYVIAFERPVEPEQVRGILSNAFPSCNTSALALGTDHKTIRVSTNYKIESNSPTVDDEAETILYNALKKGGLVSQKNVDSFKNPDIRQGGSIISSTKVGPSVAKDITYGAIISVLFALVAIFIYILVRFRNVAFSVGSTIALAIDTFVVIGFYSLLWGVMPFSLEIDQTFIGAILTVIGYSINDKVVVFDRIRENMQLHPKQDLQSLFNDSINQTLARTVNTSFSTLIVLLCILFLGGESIQSFAFAMSLGVVFGTLSSIFIASPIAYLVLGHRIKEEAPALAQA
>NZ_CP013195.1|WP_025065472.1|65518_66601_-|endonuclease/exonuclease/phosphatase-family-protein
MIRQLKRLTVQLVAGANVGTVILMLLVGYSDCINPVTHPFLATIGLLFPIFLALNLGFLVFWLIFKWRYALIPFIGYVICYGPVRTYIPVNVNREAPSDALKVMSFNVWLYAYWTVEEGKPNPVVDYLAAQDADILCLQEAQMGRKDGQEYLDSVMSKHYLYADTVQKNHGDVIALYSKYPIIRHEQIHYESRSNVSAAFHVKLGNDTVIVINNHLESVGLSPEDQMQFKEMMKGQLKGETSKQESRRLIDKLAEAVRKRAPQADAVARYIRTHRGRSIICCGDFNDSPISYAHRVVARELTDCYVATGNGAGISYHHNGFYVRIDNLMCSDDWVPYACKVDDKFGLSDHYPISCRLKKR
>NZ_CP013195.1|WP_025065473.1|66602_67532_-|rhomboid-family-intramembrane-serine-protease
MRTIPVVTKNLLICNVLAFFLMYVLRSVSGIDLNDLLGLHFLMASDFHIYQLVTYMFMHANIEHILFNMFALWMFGCVVERVWGPQKFLFYYISCGIGAGLLQEAAQFGSIYFDLYAQTPIGLSQAIEVMHANASALNGLTTVGASGAIYAILLAFGMLFPEERIFIFPLPVPIKAKWFVCGYAAIELFSALATPGDNVAHLAHLGGMLFGFLTIRYWQRHPAGANRYGRSHGEQFFQNLRNRWEQRTGKSTDTFRSDDNTPNETDWDYNARKKNEQEEVDQILDKIRKSGYDSLTKAEKQRLFEQSKR
>NZ_CP013195.1|WP_025065474.1|67744_68017_+|HU-family-DNA-binding-protein
MNKSELIEKIAAEAGLTKADAKKALEACVDTLKKALVAGDKVQLIGFGTFSVTERPAREGINPATKQKIKIAAKKVAKFKAGAELSDAIQ
>NZ_CP013195.1|WP_025065475.1|68144_69488_-|ABC-transporter-permease
MENNNSTVWQTASLHPEKEAKGEVGKEPKGATGSTSRWSFPLFIARRYLFSKKSTHVINVISVISVIGVSVATMALVIVLSVFNGFHDLVASFFTSFDPQLKVVPVKGKTAPADDPILTQIRRLPQVDVATECVEDNALAVYQDKQAMVVIKGVDDNFAELTHIKDILYGDGAFDLHAGNLQYGTIGLRLAQDLGTGTQWKGGLKVYAPLKDGQPDLTNPASSFVVDSLDSPGVVFSVKQSKYDRSYIIAPIAFARNLFGEQGFLSSLELRLKAGSDFEGVKGEMQRIAGAKYRVLDRFEQQDDTFQIMAIEKFIAYIFLTFILVVACFNIIGSLSMLIIDKKDDVVTLRNLGADDRQITRIFLFEGRMIAVVGAAIGILLGLLLCWLQQEYGFVRLGDSDGSFVVNAYPVSVHYIDVTIIFFTVIAVGWLAVWYPVRYLSRRLLAE

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Crispr_ID: NZ_CP013195_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013195_2

851411-853514

Unclear

Consensus_repeat	Method
GGACTAATTGTACATTATTGAATTGAAAT	PILER-CR
GGACTAATTGTACATTATTGAATTGAAAT	CRISPRCasFinder
GGACTAATTGTACATTATTGAATTGAAAT	CRT

32 spacers

cas2,cas1,cas4,cas7,cas8b6,cas3,cas5,cas6

The CRISPR arrays of NZ_CP013195_2

>merge|NZ_CP013195|2|851411-853514|PILER-CR,CRISPRCasFinder,CRT
GGACTAATTGTACATTATTGAATTGAAATTGCATCTTCATTACGCAAGGCTGCGGAATTTTTAAGGACTAATTGTACATTATTGAATTGAAATTCATAATATTGGCGGTTGCAATCTCGTACAATACGGGACTAATTGTACATTATTGAATTGAAATCAAATCCTACTTTGACATTGATAATATTCTCAATTCCGGACTAATTGTACATTATTGAATTGAAATATGGGCTTACGGAATCGGCGATTACAAGATATATCGGACTAATTGTACATTATTGAATTGAAATTACATTCCTCTGTTTCTTTTTGAATCATTATCAGAGGACTAATTGTACATTATTGAATTGAAATACATTCGCCAGCGGCGATATGTGCGAGAGTCAAGTGGACTAATTGTACATTATTGAATTGAAATACCGAAAGTGAGCTGCTCACCATAACACTATCGACTGGACTAATTGTACATTATTGAATTGAAATAGCTTTTTGCAGAGAATTTATTTAAAGAGGGGGAAAAGGACTAATTGTACATTATTGAATTGAAATCCGCAACTACCATACGAGCCGCTTCGACGAATCCCGGACTAATTGTACATTATTGAATTGAAATTTGCGATACCTTTCAATAGCTCTTCGAGTGCGAGGTGGACTAATTGTACATTATTGAATTGAAATTACCTGCACACCGTTCAACTTGAATGAGTTCACCGGGACTAATTGTACATTATTGAATTGAAATCGATCACCTGTCTACACATAAAATCACCCCGAACGGCGGACTAATTGTACATTATTGAATTGAAATGGTAGTAAGGTTATTGATGTAAAGACGCTGCTGCCGGGGACTAATTGTACATTATTGAATTGAAATTCATCGAACAAGTATATCTATACTGCATCTCATCTACGCGGACTAATTGTACATTATTGAATTGAAATCGATAAAATGCGTGTAAAGCTGGGCGGAGACCAGGATGGACTAATTGTACATTATTGAATTGAAATCGTCAAGAAGTTATGCTGAAGGAAATTGTCAGGTGTGGACTAATTGTACATTATTGAATTGAAATTCGATAGATACATCTCCCTTGCCGGCAGCTTTCAGGGACTAATTGTACATTATTGAATTGAAATCACCTTGGCCTGACTCTGTGCGAGCTTGTCAAACACGGACTAATTGTACATTATTGAATTGAAATGGAAACTATTATCTGTTTAGTGAGGGATTTATACCGGACTAATTGTACATTATTGAATTGAAATTTTGACGAAAATAGTAATAGACTTGATGACAAAGAGGACTAATTGTACATTATTGAATTGAAATTCGGTATCACAAACTGCTAAAAGAAACCAGATCGGGGACTAATTGTACATTATTGAATTGAAATAACTCTCATTTGGATTCACCGATGAAGTCAGGAATCGGACTAATTGTACATTATTGAATTGAAATTGCGAATCTGTTTCGGGATGATCAGCGTCTTCACTGGACTAATTGTACATTATTGAATTGAAATCAGATTCGGATCGTTGGGCATCATGAACTGAACCCGGGGACTAATTGTACATTATTGAATTGAAATTGGATGCCGGCCGATGTAGTAATTATCATTCACATGGACTAATTGTACATTATTGAATTGAAATGGCTCTTTTATGAGGAGACCAATATCAACCAGCGCCGAGGACTAATTGTACATTATTGAATTGAAATTAAAAAACGGCGCTGTGAAGAGTCGGTCGATGCAGTGGACTAATTGTACATTATTGAATTGAAATGAAAAATAAGCTCATCGGGGAGTTTGAAGTCGAAGAGGACTAATTGCACATTATTGAATTGAAATAATATATCGGGGAATCCCAGTAAACGGCGGTTGTGGACTAATTGCACATTATTGAATTGAAATTTGTGAGCGAGAATCCCATGTACTTACAAAGGTGGGGACTAATTGTACATTATTGAATTGAAATAAAGGATTCAGAGTTCTTGGCAAGACAACAGAGGTAGGGACTAATTGCACATTATTGAATTGAAATCACTCACAGCCTTGTGCTCTTCTGCCAGCACTTCCGGACTAATTGTACATACCTAAGAACGCGA

>NZ_CP013195|2|1|851411-853450|PILER-CR
GGACTAATTGTACATTATTGAATTGAAAT	TGCATCTTCATTACGCAAGGCTGCGGAATTTTTAA
GGACTAATTGTACATTATTGAATTGAAAT	TCATAATATTGGCGGTTGCAATCTCGTACAATACG
GGACTAATTGTACATTATTGAATTGAAAT	CAAATCCTACTTTGACATTGATAATATTCTCAATTCC
GGACTAATTGTACATTATTGAATTGAAAT	ATGGGCTTACGGAATCGGCGATTACAAGATATATC
GGACTAATTGTACATTATTGAATTGAAAT	TACATTCCTCTGTTTCTTTTTGAATCATTATCAGA
GGACTAATTGTACATTATTGAATTGAAAT	ACATTCGCCAGCGGCGATATGTGCGAGAGTCAAGT
GGACTAATTGTACATTATTGAATTGAAAT	ACCGAAAGTGAGCTGCTCACCATAACACTATCGACT
GGACTAATTGTACATTATTGAATTGAAAT	AGCTTTTTGCAGAGAATTTATTTAAAGAGGGGGAAAA
GGACTAATTGTACATTATTGAATTGAAAT	CCGCAACTACCATACGAGCCGCTTCGACGAATCCC
GGACTAATTGTACATTATTGAATTGAAAT	TTGCGATACCTTTCAATAGCTCTTCGAGTGCGAGGT
GGACTAATTGTACATTATTGAATTGAAAT	TACCTGCACACCGTTCAACTTGAATGAGTTCACCG
GGACTAATTGTACATTATTGAATTGAAAT	CGATCACCTGTCTACACATAAAATCACCCCGAACGGC
GGACTAATTGTACATTATTGAATTGAAAT	GGTAGTAAGGTTATTGATGTAAAGACGCTGCTGCCGG
GGACTAATTGTACATTATTGAATTGAAAT	TCATCGAACAAGTATATCTATACTGCATCTCATCTACGC
GGACTAATTGTACATTATTGAATTGAAAT	CGATAAAATGCGTGTAAAGCTGGGCGGAGACCAGGAT
GGACTAATTGTACATTATTGAATTGAAAT	CGTCAAGAAGTTATGCTGAAGGAAATTGTCAGGTGT
GGACTAATTGTACATTATTGAATTGAAAT	TCGATAGATACATCTCCCTTGCCGGCAGCTTTCAG
GGACTAATTGTACATTATTGAATTGAAAT	CACCTTGGCCTGACTCTGTGCGAGCTTGTCAAACAC
GGACTAATTGTACATTATTGAATTGAAAT	GGAAACTATTATCTGTTTAGTGAGGGATTTATACC
GGACTAATTGTACATTATTGAATTGAAAT	TTTGACGAAAATAGTAATAGACTTGATGACAAAGA
GGACTAATTGTACATTATTGAATTGAAAT	TCGGTATCACAAACTGCTAAAAGAAACCAGATCGG
GGACTAATTGTACATTATTGAATTGAAAT	AACTCTCATTTGGATTCACCGATGAAGTCAGGAATC
GGACTAATTGTACATTATTGAATTGAAAT	TGCGAATCTGTTTCGGGATGATCAGCGTCTTCACT
GGACTAATTGTACATTATTGAATTGAAAT	CAGATTCGGATCGTTGGGCATCATGAACTGAACCCGG
GGACTAATTGTACATTATTGAATTGAAAT	TGGATGCCGGCCGATGTAGTAATTATCATTCACAT
GGACTAATTGTACATTATTGAATTGAAAT	GGCTCTTTTATGAGGAGACCAATATCAACCAGCGCCGA
GGACTAATTGTACATTATTGAATTGAAAT	TAAAAAACGGCGCTGTGAAGAGTCGGTCGATGCAGT
GGACTAATTGTACATTATTGAATTGAAAT	GAAAAATAAGCTCATCGGGGAGTTTGAAGTCGAAGA
GGACTAATTGCACATTATTGAATTGAAAT	AATATATCGGGGAATCCCAGTAAACGGCGGTTGT
GGACTAATTGCACATTATTGAATTGAAAT	TTGTGAGCGAGAATCCCATGTACTTACAAAGGTGG
GGACTAATTGTACATTATTGAATTGAAAT	AAAGGATTCAGAGTTCTTGGCAAGACAACAGAGGTAG
GGACTAATTGCACATTATTGAATTGAAAT

>NZ_CP013195|2|2|851411-853450|CRISPRCasFinder
GGACTAATTGTACATTATTGAATTGAAAT	TGCATCTTCATTACGCAAGGCTGCGGAATTTTTAA
GGACTAATTGTACATTATTGAATTGAAAT	TCATAATATTGGCGGTTGCAATCTCGTACAATACG
GGACTAATTGTACATTATTGAATTGAAAT	CAAATCCTACTTTGACATTGATAATATTCTCAATTCC
GGACTAATTGTACATTATTGAATTGAAAT	ATGGGCTTACGGAATCGGCGATTACAAGATATATC
GGACTAATTGTACATTATTGAATTGAAAT	TACATTCCTCTGTTTCTTTTTGAATCATTATCAGA
GGACTAATTGTACATTATTGAATTGAAAT	ACATTCGCCAGCGGCGATATGTGCGAGAGTCAAGT
GGACTAATTGTACATTATTGAATTGAAAT	ACCGAAAGTGAGCTGCTCACCATAACACTATCGACT
GGACTAATTGTACATTATTGAATTGAAAT	AGCTTTTTGCAGAGAATTTATTTAAAGAGGGGGAAAA
GGACTAATTGTACATTATTGAATTGAAAT	CCGCAACTACCATACGAGCCGCTTCGACGAATCCC
GGACTAATTGTACATTATTGAATTGAAAT	TTGCGATACCTTTCAATAGCTCTTCGAGTGCGAGGT
GGACTAATTGTACATTATTGAATTGAAAT	TACCTGCACACCGTTCAACTTGAATGAGTTCACCG
GGACTAATTGTACATTATTGAATTGAAAT	CGATCACCTGTCTACACATAAAATCACCCCGAACGGC
GGACTAATTGTACATTATTGAATTGAAAT	GGTAGTAAGGTTATTGATGTAAAGACGCTGCTGCCGG
GGACTAATTGTACATTATTGAATTGAAAT	TCATCGAACAAGTATATCTATACTGCATCTCATCTACGC
GGACTAATTGTACATTATTGAATTGAAAT	CGATAAAATGCGTGTAAAGCTGGGCGGAGACCAGGAT
GGACTAATTGTACATTATTGAATTGAAAT	CGTCAAGAAGTTATGCTGAAGGAAATTGTCAGGTGT
GGACTAATTGTACATTATTGAATTGAAAT	TCGATAGATACATCTCCCTTGCCGGCAGCTTTCAG
GGACTAATTGTACATTATTGAATTGAAAT	CACCTTGGCCTGACTCTGTGCGAGCTTGTCAAACAC
GGACTAATTGTACATTATTGAATTGAAAT	GGAAACTATTATCTGTTTAGTGAGGGATTTATACC
GGACTAATTGTACATTATTGAATTGAAAT	TTTGACGAAAATAGTAATAGACTTGATGACAAAGA
GGACTAATTGTACATTATTGAATTGAAAT	TCGGTATCACAAACTGCTAAAAGAAACCAGATCGG
GGACTAATTGTACATTATTGAATTGAAAT	AACTCTCATTTGGATTCACCGATGAAGTCAGGAATC
GGACTAATTGTACATTATTGAATTGAAAT	TGCGAATCTGTTTCGGGATGATCAGCGTCTTCACT
GGACTAATTGTACATTATTGAATTGAAAT	CAGATTCGGATCGTTGGGCATCATGAACTGAACCCGG
GGACTAATTGTACATTATTGAATTGAAAT	TGGATGCCGGCCGATGTAGTAATTATCATTCACAT
GGACTAATTGTACATTATTGAATTGAAAT	GGCTCTTTTATGAGGAGACCAATATCAACCAGCGCCGA
GGACTAATTGTACATTATTGAATTGAAAT	TAAAAAACGGCGCTGTGAAGAGTCGGTCGATGCAGT
GGACTAATTGTACATTATTGAATTGAAAT	GAAAAATAAGCTCATCGGGGAGTTTGAAGTCGAAGA
GGACTAATTGCACATTATTGAATTGAAAT	AATATATCGGGGAATCCCAGTAAACGGCGGTTGT
GGACTAATTGCACATTATTGAATTGAAAT	TTGTGAGCGAGAATCCCATGTACTTACAAAGGTGG
GGACTAATTGTACATTATTGAATTGAAAT	AAAGGATTCAGAGTTCTTGGCAAGACAACAGAGGTAG
GGACTAATTGCACATTATTGAATTGAAAT

>NZ_CP013195|2|1|851411-853514|CRT
GGACTAATTGTACATTATTGAATTGAAAT	TGCATCTTCATTACGCAAGGCTGCGGAATTTTTAA
GGACTAATTGTACATTATTGAATTGAAAT	TCATAATATTGGCGGTTGCAATCTCGTACAATACG
GGACTAATTGTACATTATTGAATTGAAAT	CAAATCCTACTTTGACATTGATAATATTCTCAATTCC
GGACTAATTGTACATTATTGAATTGAAAT	ATGGGCTTACGGAATCGGCGATTACAAGATATATC
GGACTAATTGTACATTATTGAATTGAAAT	TACATTCCTCTGTTTCTTTTTGAATCATTATCAGA
GGACTAATTGTACATTATTGAATTGAAAT	ACATTCGCCAGCGGCGATATGTGCGAGAGTCAAGT
GGACTAATTGTACATTATTGAATTGAAAT	ACCGAAAGTGAGCTGCTCACCATAACACTATCGACT
GGACTAATTGTACATTATTGAATTGAAAT	AGCTTTTTGCAGAGAATTTATTTAAAGAGGGGGAAAA
GGACTAATTGTACATTATTGAATTGAAAT	CCGCAACTACCATACGAGCCGCTTCGACGAATCCC
GGACTAATTGTACATTATTGAATTGAAAT	TTGCGATACCTTTCAATAGCTCTTCGAGTGCGAGGT
GGACTAATTGTACATTATTGAATTGAAAT	TACCTGCACACCGTTCAACTTGAATGAGTTCACCG
GGACTAATTGTACATTATTGAATTGAAAT	CGATCACCTGTCTACACATAAAATCACCCCGAACGGC
GGACTAATTGTACATTATTGAATTGAAAT	GGTAGTAAGGTTATTGATGTAAAGACGCTGCTGCCGG
GGACTAATTGTACATTATTGAATTGAAAT	TCATCGAACAAGTATATCTATACTGCATCTCATCTACGC
GGACTAATTGTACATTATTGAATTGAAAT	CGATAAAATGCGTGTAAAGCTGGGCGGAGACCAGGAT
GGACTAATTGTACATTATTGAATTGAAAT	CGTCAAGAAGTTATGCTGAAGGAAATTGTCAGGTGT
GGACTAATTGTACATTATTGAATTGAAAT	TCGATAGATACATCTCCCTTGCCGGCAGCTTTCAG
GGACTAATTGTACATTATTGAATTGAAAT	CACCTTGGCCTGACTCTGTGCGAGCTTGTCAAACAC
GGACTAATTGTACATTATTGAATTGAAAT	GGAAACTATTATCTGTTTAGTGAGGGATTTATACC
GGACTAATTGTACATTATTGAATTGAAAT	TTTGACGAAAATAGTAATAGACTTGATGACAAAGA
GGACTAATTGTACATTATTGAATTGAAAT	TCGGTATCACAAACTGCTAAAAGAAACCAGATCGG
GGACTAATTGTACATTATTGAATTGAAAT	AACTCTCATTTGGATTCACCGATGAAGTCAGGAATC
GGACTAATTGTACATTATTGAATTGAAAT	TGCGAATCTGTTTCGGGATGATCAGCGTCTTCACT
GGACTAATTGTACATTATTGAATTGAAAT	CAGATTCGGATCGTTGGGCATCATGAACTGAACCCGG
GGACTAATTGTACATTATTGAATTGAAAT	TGGATGCCGGCCGATGTAGTAATTATCATTCACAT
GGACTAATTGTACATTATTGAATTGAAAT	GGCTCTTTTATGAGGAGACCAATATCAACCAGCGCCGA
GGACTAATTGTACATTATTGAATTGAAAT	TAAAAAACGGCGCTGTGAAGAGTCGGTCGATGCAGT
GGACTAATTGTACATTATTGAATTGAAAT	GAAAAATAAGCTCATCGGGGAGTTTGAAGTCGAAGA
GGACTAATTGCACATTATTGAATTGAAAT	AATATATCGGGGAATCCCAGTAAACGGCGGTTGT
GGACTAATTGCACATTATTGAATTGAAAT	TTGTGAGCGAGAATCCCATGTACTTACAAAGGTGG
GGACTAATTGTACATTATTGAATTGAAAT	AAAGGATTCAGAGTTCTTGGCAAGACAACAGAGGTAG
GGACTAATTGCACATTATTGAATTGAAAT	CACTCACAGCCTTGTGCTCTTCTGCCAGCACTTCC
GGACTAATTGTACATACCTAAGAACGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013195.1\|WP_060544202.1\|841330_841939_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238317
NZ_CP013195.1\|WP_025065776.1\|860507_861161_+\|DUF308-domain-containing-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065784.1\|849393_849906_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP013195.1\|WP_025065787.1\|844007_844577_+\|hypothetical-protein	cas5	mkCas0069_cas5_CAS-I-B	unknown
NZ_CP013195.1\|WP_025065782.1\|850931_851195_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP013195.1\|WP_025065779.1\|858246_858639_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_060544204.1\|844573_846715_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP013195.1\|WP_025065774.1\|863450_863987_+\|HDIG-domain-containing-protein	unknown	unknown	gnl\|CDD\|237176
NZ_CP013195.1\|WP_025065781.1\|853977_854421_-\|lipocalin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|374647
NZ_CP013195.1\|WP_060544205.1\|856149_857256_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_060544206.1\|857453_857960_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP013195.1\|WP_025065783.1\|849902_850916_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP013195.1\|WP_025065778.1\|858762_859470_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065775.1\|863062_863323_+\|membrane-protein	unknown	unknown	gnl\|CDD\|367325
NZ_CP013195.1\|WP_025065777.1\|859483_860074_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065786.1\|846719_848024_+\|hypothetical-protein	cas8b6	mkCas0111_cas8b6_CAS-I-B	unknown
NZ_CP013195.1\|WP_025065780.1\|854428_855991_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379441
NZ_CP013195.1\|WP_025065788.1\|843215_843989_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09759_cas6_CAS-I-A	gnl\|CDD\|187889
NZ_CP013195.1\|WP_025065785.1\|848020_849079_+\|hypothetical-protein	cas7	mkCas0088_cas7_CAS-I-B	gnl\|CDD\|187818
NZ_CP013195.1\|WP_060544203.1\|841980_842919_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929

Protein	Function_ID	Function_description	E-value
NZ_CP013195.1\|WP_060544202.1\|841330_841939_+\|thiamine-phosphate-synthase	gnl\|CDD\|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	4.53113e-11
NZ_CP013195.1\|WP_025065782.1\|850931_851195_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.97926e-28
NZ_CP013195.1\|WP_060544203.1\|841980_842919_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_CP013195.1\|WP_060544204.1\|844573_846715_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.86457e-61
NZ_CP013195.1\|WP_025065774.1\|863450_863987_+\|HDIG-domain-containing-protein	gnl\|CDD\|237176	PRK12703, PRK12703, tRNA 2'-O-methylase; Reviewed.	2.16787e-19
NZ_CP013195.1\|WP_025065781.1\|853977_854421_-\|lipocalin-like-domain-containing-protein	gnl\|CDD\|374647	pfam16585, Lipocalin_8, Lipocalin-like domain.	6.26268e-46
NZ_CP013195.1\|WP_060544206.1\|857453_857960_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	7.63656e-42
NZ_CP013195.1\|WP_025065783.1\|849902_850916_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.45208e-169
NZ_CP013195.1\|WP_025065775.1\|863062_863323_+\|membrane-protein	gnl\|CDD\|367325	pfam03083, MtN3_slv, Sugar efflux transporter for intercellular exchange. This family includes proteins such as drosophila saliva, MtN3 involved in root nodule development and a protein involved in activation and expression of recombination activation genes (RAGs). Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This family contains a region of two transmembrane helices that is found in two copies in most members of the family. This family also contains specific sugar efflux transporters that are essential for the maintenance of animal blood glucose levels, plant nectar production, and plant seed and pollen development. In many organisims it meditaes gluose transport; in Arabidopsis it is necessary for pollen viability; and two of the rice homologs are specifically exploited by bacterial pathogens for virulence by means of direct binding of a bacterial effector to the SWEET promoter.	0.00116534
NZ_CP013195.1\|WP_025065780.1\|854428_855991_-\|hypothetical-protein	gnl\|CDD\|379441	pfam14052, Caps_assemb_Wzi, Capsule assembly protein Wzi. Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organisation of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 1 capsule biosynthesis. It is likely to be involved in the later stages of capsule assembly. It is likely to consist of a beta-barrel structure.	1.33386e-13
NZ_CP013195.1\|WP_025065784.1\|849393_849906_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.2903e-57
NZ_CP013195.1\|WP_025065785.1\|848020_849079_+\|hypothetical-protein	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.99558e-07
NZ_CP013195.1\|WP_025065788.1\|843215_843989_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187889	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	3.24221e-39

>NZ_CP013195.1|WP_025065782.1|850931_851195_+|CRISPR-associated-endonuclease-Cas2
MYVVLVYDIGERRVGKMLKLCRQYLSWIQNSVFEGEITEVKLKALLLQAEEIMEKEQDSIILFKGKSQWVLNKEIIGLERCSTDNFL
>NZ_CP013195.1|WP_025065783.1|849902_850916_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKRTFYLFNPGILERRDNTLKFTPVVETEGKEELGQARFLPVEDVNEFYCFGALRANSALFNFLGQRDIPVHFFDYYENYTGSFMPRDGLLSGKMLLAQTAAYRSIKKRQVIARKFIEGSAFNMQKNLQYYNRRGKDMEEKMEMIHVLANKIEETESIEELMGIEGNIRQIYYDAFNLIINDFEMGGRSKQPPRNEVNALISFGNMMCYTQCLRAIHQTQLNPTISFLHTPGERRFSLALDVSEIFKPILVDRVIFKVLNKKLIQEKHFDRKLNRCLLNANGKKIFVQAMEDRLKETIQHRALGRKVSYQHLMKLECYKLAKHLLEMEEYKPFKMYW
>NZ_CP013195.1|WP_025065784.1|849393_849906_+|CRISPR-associated-protein-Cas4
MQITGTCFNYFQVCHRKLWLFANGITMEHNSDAVEEGMLLHEKSYPQRSTQYEEVAIDGIKVDFFDSRNRVIHELKKSNKIEVAHEWQLKYYLYVFQQNGIANCTGILEYPALRRTKKVTLEEDDICELQRMMGEIETIIAEEHCPLIKRRGFCRNCSYFDFCYSEEERE
>NZ_CP013195.1|WP_025065785.1|848020_849079_+|hypothetical-protein
MNPYIYLRALKHADHTVFCVSDGQKTYFDPQFNRSVPFSSGQQVKRSILQALTDELNVPMAPITFNYNINAKHELENKEPWSPCDPRYVDQLLGGWMKADGNGPTVKRRSPLSISSMRAIHPLLAGSYKENLTFDRSDRPDYNPVNVRIVGSNELLTEEQIEAYLFENKRTLPRRNWIPDNKRASGLFISDVAIDLRTLFCVSTNQHEPELTKEKIEELKTGGWIESENVFGKCLVLPREEREKVIPALANALINWRITSNQARTFSLMETLAVAISDNANTVPAAIRAKLIDNGEIQRAKPIIDETAGANVFVTLPCAGYVQTESESADALEAAEKKLVEMMLAFDYEHQV
>NZ_CP013195.1|WP_025065786.1|846719_848024_+|hypothetical-protein
MVTTNIGRIFLKVYKEKIGKEYHAKDFFDEVFHPLVFGSNKYLQWVQNSPFVQMKKGQKVDNLTPNERQEKLEDLHEKISAGSKDASIAIGYAASEEKGYASTSGQVTNIPISISEDDIYYSWIGSCLALGIQGGVSILFEDPDILWDTFIGWKYYRQMVDSNAAMRGNQLSSAWNAQWLAHRYSKIYDPDSPLANFSPTELKGDGLGIETISWTKLLIGICNHFEKPQLLGYVFSLGQTNTTIGFIPFALDQIRHPLTLYKKLFAMDGKQAEELWGTAMGFQKACQRGAIGITAMEPKGLRDYIMGKKLPKYKEDEQQTILFNTYITWIIAMLNNEDLWATAQEFANALQAYATAGRQSKTGNSRKVDEVIKATNKNAFISALVNIIGDAENKEAIDTIAQTVNAMPTDNVPYFLTLVRFQYAKINNKKIKQL
>NZ_CP013195.1|WP_060544204.1|844573_846715_+|CRISPR-associated-helicase/endonuclease-Cas3
MSSAYDHILAKHEDSGLITLKQHLEDVAQVAVIIARNLGLDENLARKGAWLHDIGKASPLFQQTLKHGYVRPPGFIFRHEIASLFFLSLVEEEERLPIIEMITAHHKSLFRNDPKNKGLLDLDENTESFEIHSGRFNEWSTTALGILSELGLKTHDIDIKEAQANYNFVVDSCWTFKNGCSLWKGLLMAADHYASALADKTEINIDRLFIKPDLSFYQRQNELYPLSLISSEDSRPHTLVTAPTGAGKTDFLLKRCRGRVFYTLPFQASINAMYDRIKTDLNDTDAQIYLLHAASNLIAEDGTLEEVILQRHIGASVKVLTPHQMASLVFGIKGYEAMAADLQGCDIILDEIHTYSDTIQSIVLRIIEILLVLNCRIHIGTATMPSVLYEKVLSLLGNKEKVYEVKLPNDTLASFNRHIIYKVESFDQCGNLLSDAIERQQKILIVCNQVKRAQQLYLELSDRYPDVQRMLIHSRFKRGDRQRLEQELKNKFNALSETCIVVSTQVVEVSLDISFDLMITECAPIDALIQRFGRINRKRSAATIGKYKPIYVLAPPENEREARPYSLPVLQRSYEVLPDGAILHETGIQQMLDKVYPDITITNIDYSGAVYTGGKWQLKKLCHYSKSALLDVLDIESAICITQTDRDSYKTDTAIEKAKAEIPVSYRAIAFRRLDKIEVGHHPYIIPDKAYSEELGLQMDYASAEYYNTFEIL
>NZ_CP013195.1|WP_025065787.1|844007_844577_+|hypothetical-protein
MFVVKYQGKFGFIKPWTAVRDGLTYSQQFLTPSVIEGIEKKLFPEMLTYPGVIGKILRHKLSYSAIDIQQERTQARGWDKKPKEKRWVRNQSILNRGVMLNPILHLAFADRDSAEIAARQHLCLCRNEDLMLPNAEISEMEEEEFATIDGFELRFGQSENSFLVGYNRFDDNRPMYGRLEVSGNPVFGL
>NZ_CP013195.1|WP_025065788.1|843215_843989_+|CRISPR-associated-endoribonuclease-Cas6
MRFKITLQVHSQQYGNAFPINYQYELSAAIYQILSYADSDYAEWLHNNGFQSDHGSKSFKLFAFSHLIVPNYGINKEDERLLLKCDTVTWFISFLPQKSTCKFIEGVFKEQVFQIGDQFSKVEFVVRDIEIMPPLEYKETMTFQTMSPVCITQRTENGNTQYLSPEAPNYSEALLKGLLARYEALNGEIYQGETFCKMNILSKIKPKLIKIKAGTRAQTFVRGYDFSFSLSLPEPLMQIAYEGGLGEKTSLGFGMIM
>NZ_CP013195.1|WP_060544203.1|841980_842919_+|ribose-phosphate-pyrophosphokinase
MSEKDSFLVFSGTNTRYLAEKICASLGCPLGNLLVTRFSDGEFAVCYEESIRGRDVFLVQSTFPNSDNLMELLLMIDAAKRASARNIIAVIPYFGWARQDRKDKPRVSIGAKLVADLLSVAGIDRLMTMDLHADQIQGFFNVPVDHLYGSGVILPYLQSLQLDDLVIASPDVGGSKRANTYAKYFGCPLVLCNKTRARANEVATMQIIGDVKDKNVVIVDDMVDTAGTITKAADIMKQAGAKSVRACASHCVMSGPASERVQDSALEEMVFTDSIPYSHRSAKVKQLSVADMFAETIRRVVNNESISSQYLI
>NZ_CP013195.1|WP_060544202.1|841330_841939_+|thiamine-phosphate-synthase
MKLVIMTKSTFFVEEDKILTALFDEGMDNLHLFKPDSSPLFSERLLTLLSDEECRKITVHEHYYLKSEYRLAGIHIDQMDAEAPKGYRGHISRSCTNIARLKEMKKKANYVFLQNIFNSKLIPSQQSTFTMSQLEEAASRGLIDRKVYALGGMDIDAIRTARELGFGGVVISDDLWDRFDIHNETDFKPLLNEFVRLRRAVG
>NZ_CP013195.1|WP_025065781.1|853977_854421_-|lipocalin-like-domain-containing-protein
MKRNIRLSVCYFIIGCMFVSCDLETERAGRVEGMWHLEQVDSLQTNGVCDLSDRRLFWSFERRLMSLSDADWQHLEYLLRFNDTGDSLFLSDPYESNREKGDIAISDAAVLAPYGIHSLNDHFKIELLSGQKMLLSNTRWRLRFRKF
>NZ_CP013195.1|WP_025065780.1|854428_855991_-|hypothetical-protein
MKRWSLLAAWLVMALTVSAQWQDEQPQPMRPWSGLHYMVGVQTSTAKGQTPLWLNANRYGLSSLEKANGYLRAALERPLQTDSGRKWGLGYSLDVALPYHYTSKVVVQQAFVELRWLHGVLSVGSKQVPMEFKNNALSSGSQALGINARPVPQIRLSLPDYWILPFGGEWLRLKGHLAYGRMTDDGWQHDFTDRRQRYADKVLYHSKAGYLKVGNEDVFCPWSLELGLEMASTFGGTVYLPQDDGSMRVIKGGTGLRNYWKALVPGGSEVIEKGTVYQNAEGNQLGSWLIRLNYDVDTWCLRAYADKFFEDHSAMLQLDYDGYGTGGEWNQRVKRRYLLYDFKDWMLGMELNVKYGSWLRDIVFEYIYTKYQSGPVYHDHTQAIPDHIGGRDNYYNHAIYMGWQHWGQVMGNPLFRSPIYNRNGRIDVANNRFVAYHLGVSGRPIDCLGYRVLTTYQTGYGTYVEPYTKPHHNVSILLEMDWQLSHGWSVTGAYGMDAGHILGHNYGVQFTIAKRGIFNL
>NZ_CP013195.1|WP_060544205.1|856149_857256_+|hypothetical-protein
MKKIMAILTALFTFTVCAQAMSYRQAREQALFLTDKMAYELNLTDDQYEAAYEINLDYLMSIDDYADLYGAYWRQRNIDLGYILLDWQYRAYCRANYFYRPLYWDEGYWHFGVYARYPHRDYFYFGRPTFFSVYCGDHSWRMNGGRSWYSGRTFRPHYSEHYIGMRDGFDRGDFGRGSVMIVNSGNTQFIKYENARDYQRNSPFGNNRSFGEGNRNIDRPRSFGGGNRNIDRPRSFDNGNYETARSRSFGQESAGNNRVRSFGQSSTRTTVGYGSGMPQREFGGSETRRSFFDSRNSRSNNTFGGGHFGGASQQSTFTRSFGSSSRSFGESDSSMTGRSFGGGNSNASTRSFGSSSNSGGGGHFGGRK
>NZ_CP013195.1|WP_060544206.1|857453_857960_-|histidine-phosphatase-family-protein
MTTLYLVRHGETVDNVRQILQGQRPGELNDTGVRQAQAVCDKMREVAIDAFIASDLARSYATCEIIAKPHHKEVRTSSLLRERDWGDFTGAFIPDLKGKTWPANVETLDAIKARAQRFLDKLKSDYPNQTVLAVGHGIINKAIQSVFYGKPMTEIQKMANAEVRVLKL
>NZ_CP013195.1|WP_025065779.1|858246_858639_-|hypothetical-protein
MTTTHENPLSIWVRLILLLDIIYLIVPLLGALTLESNTYDFCFRLGVMACLVGIYCRQRWGVIGFYALLIVNFVCAAFLHLGMGTHDVMLNFAGFLVQALWIYLALSIRKDRRSGWSVIFGLKDRGHEMN
>NZ_CP013195.1|WP_025065778.1|858762_859470_-|hypothetical-protein
MKKTFLITAFCALLGIIVFSCSQDELDGTTDVSEMKGSLSSDNAELSNYFKTSDFQLMVRSHGLDLGSINLNHVSKQSYDDYYVDSYIIPVGDEDTPKGTMVVCADYKHSQYYAIYMDLSDILISNSSKACVSFSDGTELADYRVTHKENNISFKLDKVYSDKGTEVSCLTRMLPPPQGKESWSNCVRRVFQTASESCAKDPRCHIMCVTPDLLTRGGCTGSMIAAAAAACVLRC
>NZ_CP013195.1|WP_025065777.1|859483_860074_-|hypothetical-protein
MKGKLQLTVLMIIFLSAFIALCIYGRNKIVCLEKVEDSLQIQLRYAHSTIVNYRDIMGLSWDLQNRKLRSDSIKLVSKGREILFADILSDKKVYASLSTDNCWSCVLSLQNYILAHKEDKNVIYLIHYYDPEMLRAFLLYSKIKNNVYLIKGKQPRPVDDSSAPYLFMATKDGRITKVLRPLREDSGLLNTYFFNN
>NZ_CP013195.1|WP_025065776.1|860507_861161_+|DUF308-domain-containing-protein
MKLIQTSFFRAAVALIVGALLIKYRQDMVTWLTVSIGILFFLSGLITCIVYYVSLHDDRATATDVPEAAQPDSKPTFPIAGLGSLILGVILALAPNTIVDWMTYILGGILILGSIGQYVMLAGLAKHTRVGMIYWLMPTLVFLVGLTAIVKPDWISTAPLFVIGWTMILYGIVECINAFKIMNMRRQMARQAQSGAPVDAVAIETQTGEETPQEPAD
>NZ_CP013195.1|WP_025065775.1|863062_863323_+|membrane-protein
MDKSKFFERVGWVGMVTSILMYVFYFRVIQQNLSGHPGDPLQPLMAGINCTLWVCYGLFKEKRDWPITIANAPGVIFGFIAAYTSF
>NZ_CP013195.1|WP_025065774.1|863450_863987_+|HDIG-domain-containing-protein
MDYQKIIDKYYTEDNELRHILLTHSKSVTARALRIVDRHPELQVDRRFIEEAAMLHDIGIIHCDAPGIQCFGTQPYIRHGMLGAEMLRAEGFPRHARVCERHTGAGISIEDIRSQGLPLPEQDFLPETWEEQVICYADKFYSKTHLEQEKTLEQARQSLAKFGTAGLARFDKWVKMFE

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Crispr_ID: NZ_CP013195_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013195_3

890232-890339

Orphan

Consensus_repeat	Method
GGCGGAAACTTTCCCCGACGAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013195_3

>merge|NZ_CP013195|3|890232-890339|CRISPRCasFinder
GGCGGAAACTTTCCCCGACGAAAAAACAACTTTTCCGCCTGGGCGGAAGAGCAGAAAATTGAAAAAACAGCGTTTCCGCCGCGGCGGAAACCTTCCCCGACGAAAAAA

>NZ_CP013195|3|3|890232-890339|CRISPRCasFinder
GGCGGAAACTTTCCCCGACGAAAAAA	CAACTTTTCCGCCTGGGCGGAAGAGCAGAAAATTGAAAAAACAGCGTTTCCGCCGC
GGCGGAAACCTTCCCCGACGAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013195.1\|WP_060544212.1\|884254_885592_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|273704
NZ_CP013195.1\|WP_025066469.1\|887826_888336_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066476.1\|896815_897736_-\|TIGR01212-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
NZ_CP013195.1\|WP_060544214.1\|888339_888867_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|376792
NZ_CP013195.1\|WP_025066472.1\|890505_892710_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|366374
NZ_CP013195.1\|WP_025066477.1\|898066_898684_+\|3'-5'-exonuclease-domain-containing-protein-2	unknown	unknown	gnl\|CDD\|176653
NZ_CP013195.1\|WP_025066470.1\|888863_889325_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|376792
NZ_CP013195.1\|WP_025066684.1\|902107_904855_-\|fimbrillin-family-protein	unknown	unknown	gnl\|CDD\|372499
NZ_CP013195.1\|WP_051559343.1\|899987_901280_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_CP013195.1\|WP_051559342.1\|894509_895781_+\|DUF3078-domain-containing-protein	unknown	unknown	gnl\|CDD\|378621
NZ_CP013195.1\|WP_060544213.1\|885588_886605_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133029
NZ_CP013195.1\|WP_060544211.1\|882269_883292_-\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237363
NZ_CP013195.1\|WP_156409608.1\|882075_882225_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066471.1\|889423_889915_+\|Lrp/AsnC-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|183019
NZ_CP013195.1\|WP_060544536.1\|886963_887830_+\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|376576
NZ_CP013195.1\|WP_025066473.1\|893012_894437_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP013195.1\|WP_060544537.1\|898737_899925_+\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NZ_CP013195.1\|WP_060544215.1\|901606_902011_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|375718
NZ_CP013195.1\|WP_172792995.1\|883583_883850_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066475.1\|896006_896810_+\|gliding-motility-protein-GldB	unknown	unknown	gnl\|CDD\|274623

Protein	Function_ID	Function_description	E-value
NZ_CP013195.1\|WP_060544212.1\|884254_885592_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|273704	TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme. This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see TIGR01574). Sequence alignments suggest that this equivalog performs the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. [Protein synthesis, tRNA and rRNA base modification].	5.11031e-119
NZ_CP013195.1\|WP_051559342.1\|894509_895781_+\|DUF3078-domain-containing-protein	gnl\|CDD\|378621	pfam11276, DUF3078, Protein of unknown function (DUF3078). This bacterial family of proteins has no known function.	5.97625e-27
NZ_CP013195.1\|WP_025066476.1\|896815_897736_-\|TIGR01212-family-radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	2.02422e-109
NZ_CP013195.1\|WP_060544214.1\|888339_888867_+\|biopolymer-transporter-ExbD	gnl\|CDD\|376792	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.	1.35254e-14
NZ_CP013195.1\|WP_025066472.1\|890505_892710_+\|S9-family-peptidase	gnl\|CDD\|366374	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region. This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.	6.9655e-92
NZ_CP013195.1\|WP_025066477.1\|898066_898684_+\|3'-5'-exonuclease-domain-containing-protein-2	gnl\|CDD\|176653	cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins. WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability.	5.19026e-46
NZ_CP013195.1\|WP_025066473.1\|893012_894437_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	2.61793e-122
NZ_CP013195.1\|WP_025066684.1\|902107_904855_-\|fimbrillin-family-protein	gnl\|CDD\|372499	pfam13149, Mfa_like_1, Fimbrillin-like. A family of putative fimbrillin proteins found by clustering human gut metagenomic sequences. Analysis of structural comparisons shows this family to be part of the FimbA (CL0450) superfamily of adhesin components or fimbrillins.	8.23459e-13
NZ_CP013195.1\|WP_051559343.1\|899987_901280_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	1.4986e-65
NZ_CP013195.1\|WP_060544213.1\|885588_886605_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	7.26272e-45
NZ_CP013195.1\|WP_060544211.1\|882269_883292_-\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	0
NZ_CP013195.1\|WP_060544215.1\|901606_902011_-\|HU-family-DNA-binding-protein	gnl\|CDD\|375718	pfam18291, HU-HIG, HU domain fused to wHTH, Ig, or Glycine-rich motif. Rapidly-diverging family of HU domains predominantly observed in the bacteroidetes lineage with a predicted role in recognition and possible interception of the DNA of parasitic elements, a counter-conflict strategy preventing incorporation of these elements into the host genome.	4.3016e-25
NZ_CP013195.1\|WP_025066471.1\|889423_889915_+\|Lrp/AsnC-ligand-binding-domain-containing-protein	gnl\|CDD\|183019	PRK11179, PRK11179, DNA-binding transcriptional regulator AsnC; Provisional.	8.5914e-38
NZ_CP013195.1\|WP_060544536.1\|886963_887830_+\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|376576	pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family. This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.	6.43954e-28
NZ_CP013195.1\|WP_025066470.1\|888863_889325_+\|biopolymer-transporter-ExbD	gnl\|CDD\|376792	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.	5.00141e-09
NZ_CP013195.1\|WP_060544537.1\|898737_899925_+\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	3.14353e-114
NZ_CP013195.1\|WP_025066475.1\|896006_896810_+\|gliding-motility-protein-GldB	gnl\|CDD\|274623	TIGR03514, GldB_lipo, gliding motility-associated lipoprotein GldB.	1.60272e-26

>NZ_CP013195.1|WP_025066471.1|889423_889915_+|Lrp/AsnC-ligand-binding-domain-containing-protein
MGHHNLDLLDKKILTLIGEDARTPFLEVARACNVSGAAIHQRIQKLFNSGILKGSQFILNPEKVGYETCAFVGLHLKDPNEFDYVADELRKIPEVVECYCTTGDYDLFIKIYAFNNHHLADIIHDKLQPLGLSGSETIISFNTMINRQLPIADIPVRSEIRES
>NZ_CP013195.1|WP_025066470.1|888863_889325_+|biopolymer-transporter-ExbD
MSMFRRRTHSVPGLNTSSLPDLIFTVLFFFMIVTHMRKTVLKVHIQVPQGTELTRLTKKSAVSYIYIGTPSQDMQTIAGTSTRIQLNDKFASPADIIDYIEAEQNRMSPEDRQQMTVSIKADKHTKMGVMTDVKQALRQAKALRVSYSAVSRK
>NZ_CP013195.1|WP_060544214.1|888339_888867_+|biopolymer-transporter-ExbD
MFRHQLRQVPGLNTTSTADISFMLLIFFLVTTSMDVDKGLSRRLPPPNQRPQTEETNVDKRHLMTLEITANNRLLINRHPAQITEIRQMALHFIQSQGRKHLFSISADPNSGYDIYFQMQNELAAAYHMARNEYALRRFGRRYSLCSHQQRETIKALCPQRIAENYDTGKEGGDQ
>NZ_CP013195.1|WP_025066469.1|887826_888336_+|hypothetical-protein
MKPNSIRQWPAERLSQRVLYVLIGLVTVIFALFYLWGYDRPYTINPNFNAPLFTNAVIGLMTVLVLGAIGLTFWTVWTGLRKRGKTGRLDNNIPVKQISYAIAIGTVVLSLLTFGFGSSSEMMINGRKYADTLWLKAADMFIYTALLLLIAAIGAVVYGATRYYRKEKR
>NZ_CP013195.1|WP_060544536.1|886963_887830_+|MotA/TolQ/ExbB-proton-channel-family-protein
MKNLITRFAISSFLLLCFSTTITAQKQGDGTPSTQQQTQHARPKVVTDSTHATQQADSLLEDMAVSAPDMDIEPAESAGFHQALKTKFIEGNAGFMSLVALALVIGLAFCIERIIYLSLSEINAKQFMRDLEAKISTGDIEAAKDQCRETRGPVASICYQGLVRIDESIDNIERSVASYGSVQAANLEKGCSWITLFIAMAPSLGFLGTVIGMVMAFDQIQSAGDISPTIVASGMKVALITTIFGIIVALILQLFYNYILSKIEHLTAQMEESAIALLDSVMKYQLKK
>NZ_CP013195.1|WP_060544213.1|885588_886605_+|glycosyltransferase-family-2-protein
MKLAIVILNWNGRAMLAEYLPTVIEYSRNEAVVYVADNASTDDSMQLIHDKFKGCKTILLDQNYGFAEGYNRALKQIEADYYLLLNSDVEVTHHWLTPLLEFMDTHPDVAACQPKLLSECDKDNFEYAGAAGGYLDKYGYPFCRGRIFNTIEPDSGQYDYNTEILWATGACLLIRSRDYWDAGGLDARFFAHSEEIDLCWRLRLMGRKIYCIPDSRVYHVGGGTLPKSNSMKTFLNFRNNLTMLYKNLPENELKSVMRIRWFLDYLAALQMLFLNRNIGDCKAIFRARKAFKKWLPEFKEDRAEIQRRRIIGRVVERRPYSILWQYYVRGRHRFSELV
>NZ_CP013195.1|WP_060544212.1|884254_885592_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MIDTSAFQNKTAAYFTLGCKLNFSETSTFGQMLQNMGVRTARKGEHADICLINTCSVTEVADHKCRQAIHRMVRENPHSFVVVTGCYAQLEAETVSKIDGVDLVLGSNEKANLIQFLSEAWSRGGEKDALHEFHSVQTKDIRTFAPSCSRGNRTRYFLKVQDGCNYFCTYCTIPYARGFSRNPSIASLVAQAEQAAREGGKEIVLTGVNIGDFGVTTGEHFIDLVRALDQVKGIRRFRISSLEPDLLDDALIDYCASSRAFMPHFHIPLQSGSDEVLRLMHRRYDRSLFAHKIALIKEQMPDAFIGVDVMVGSRGEKPEYFEDCYNFLAGLDITQLHVFPYSERPGTSALSIPYVVNDKDKKLRSKRLLALSDEKTQAFYAKHIGRQAEVLFEKAARGKAMHGFTKNYIRVELPPSMAREEYDNQLIDVTLGEFNHDRSALKAIL
>NZ_CP013195.1|WP_172792995.1|883583_883850_-|hypothetical-protein
MQRSLSHLVVTKQQLLLQTQTLTLLLLIQWQVILWLLIQLLLTLLLLCNQLELKNERLTDGLSSSVFLFIPYLVIICQTPATNKPSIE
>NZ_CP013195.1|WP_060544211.1|882269_883292_-|branched-chain-amino-acid-aminotransferase
MKDLDWANLSFGYLPTDYNIRCYYRNGRWGEPEVCSDEYLKLHMAAICLHYGQEAFEGLKAYRCPDGKIRLFRMNENATRLQATSRGIMMPEVPTKLFEEMVTKAVRLNQDYVPTYESGATLYIRPLLIGTSAHVGVRPSEEFIFLVFVTPVGPYFKGGFAANPYVIIRDYDRSAPLGTGMYKVGGNYAASLRANSIAHEKGYVSEFYLDAKEKKYIDECGAANFFGIKNNTYITPRSTSILPSITNKSLMQIATDIGMKVECRPVPEEELSSFEEAGACGTAAVISPISYIDDLDTGVRYTFSKDGKPGPISTKLYNHLRAIQYGIEEDRHGWTTVVVG
>NZ_CP013195.1|WP_156409608.1|882075_882225_+|hypothetical-protein
MIAIARPILKEIDVLVCNAFECTTDYYTNETETTLLKSFLGFPGDTKGY
>NZ_CP013195.1|WP_025066472.1|890505_892710_+|S9-family-peptidase
MKKIITVCAALLLAYSNAMAGEKLKLKAITGGLFSADYISGINPLDGDDQYARISSDGKQIVQYSFKTGKQTGVLFDVNSTMGEKIKGFDGYRMSPDSKRILIQTQTQHIYRRSFKAVFYIYTIASRKLERLSDGGPQQIPTWSPDGQQIAFVRDNNIYLVKLLYDNAESQVTKDGKFNAVINGIPDWVYEEEFGFNSALTFTADGEMICWIRYDESKVKTYALEMFKGLNPAHKPYSTYPGTYAYKYPKAGEDNSKPSVWSYDIKSHQTRQLQIPVDADGYIMRIKATDDPKRVIVYAMNRHQDALHLYAVNPRSTVAQLLIKESVPRYVKEEVVEGAIIGKNNIVLPSDRDGYMHLYIYNMNGQMIRKIGGGNYDITRVYGMDEKSGDVYYQAAAINPHDRQVLVAHRNGKIERLTSREGVNNAIFSTDYQYFINIWSDYNTPYVFTICNNKGKTLETLIDNKELRNKLAAYDLGQREPFSFTTSEGVKLDGWMVKPTDFNTAKKYPVILYQYSGPGSQQVLNAWSSGSMGGGGSFDHYLAQQGFIVVCVDGRGTGGRGADFEKCTYLKLGVLESRDQVETAQYMASLPYVDKSRIGIWGWSFGGFNTLMSISEGRGIFKAGVAVAPPTDWRYYDTIYTERYMRTPKENPDGYGDNPITRAAKMNAALLICHGTADDNVHPQNTFEYAEALVQADKDFKEIYYTNRNHGISGGNTRNHLSRQISNFFIEQLK
>NZ_CP013195.1|WP_025066473.1|893012_894437_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MTRKKKPLPLLENIMIMDVAAEGKALARVDDMVIFVPFAAPGDIVDLQVRRKKHHYCEAEVVRFIKQSNIRQAPMCEHFGVCGGCKWQHLPYEAQLKAKQKQVYDQLTRIGKVELPEFRPIIGSVKIREYRNKLEFGCSNRRWLTREQVASGTTFDNMNAIGFHITGAFDKILPIDKCWLMDDLHNQIRNHIRDFAQESGMSFFDLREQKGLLRDIVIRNSNTGEWMVLIQFHYEQSGDEERSRQLLQSVADAFPQISSLLYVNNQKCNDTFNDLPVHVFRGNDHIFETMEGLRFKVSPKSFYQTNTEQAFHLYSVAREFAQLTGHETVYDLYTGTGTIANFIARNARRVIGIEYVPEAIRDAEVNSEINSISNTCFYAGDMKDILTADFVASNGHPDVIITDPPRAGMHPDVVKTILAAAPDRIVYVSCNPATQARDLSLLDSAYRVTAVQPVDMFPHTPHVENVVLLEKRRS
>NZ_CP013195.1|WP_051559342.1|894509_895781_+|DUF3078-domain-containing-protein
MNIMRIKYLLVFSFALATLSATAQLRISKPLSSDFVKRYVDSLAMSKHQLDSQSFKSCPSDRMALLFMPATFYHSPAARLLRYSNEPQNAYDEEIDRALMNMYLNRPDLITIDERTLTQIGPAITPEKTTLKPATDIIDKVAPTPAEPLISPVDVVVKKPNFWTFGGDYYLQFLQNYISSNWYKGGESNYSMVGSVTIQANYNNKQKVKWDNKLELKLGYQTTRGDTIHRYKSSEDLIRYTGKLGLQATKRWYYTLQLIANTQFTHGFKNNDPRIYSGFMSPFNLNMSLGMDYNVDWFKSRLKGTMHIAPLAGNFRYVRLLDLSQRYGLDEGKHTLVDYGSEFTVDLNWKLSEMIKWRMRIYGYTTYRRAELEWENTIAFQFNKYFSTNLFIYPRFDDGTTPDHHHGYWQLKEYASIGFAYSF
>NZ_CP013195.1|WP_025066475.1|896006_896810_+|gliding-motility-protein-GldB
MKKIYYILIATMILCAACEFRLKPNEWSDRDARIEVRRYDRLEIRYLTTGDYSALQEMNMEYPIETRTLIEKVLQLGSVDDPEINGRFLRYYQDSTLQTIVADVQMEFAKMEDVNSELAESFGRLKKWLPKINMPTFYAQIGALDQSVIVGNGVIGICLDKYLGVNYPIYKKYYSRGQRLSMDRQFIVPDCLIFYLLSLYPMPNYDARTQIEKDLHMAKVMWVANKTLGKSFFETRYVAMVEAYMNKQKNCNIEALLQLDDYSAMAK
>NZ_CP013195.1|WP_025066476.1|896815_897736_-|TIGR01212-family-radical-SAM-protein
MTQLYNDFGTWIRGQFPFRVQKIAIDAGFTCPNRDGRIGTGGCTFCDNRTFNPAYTDRRKTVGEQLQEGKAFFAHKYPEMRYLAYFQAYTNTYAPVSVLAAMYEEALRTEGVVGLVIGTRPDCISTPLLDYLETLSRRTFVLIEYGIETANNVTLRRINRGHTFECAQKAIEMTHQRGILTGGHVILGLPGEDAEESIRQAPIISSLPLDILKIHQMQIIRGTTLAREYAHKPFHVYDVNEYIELIIGYITRLRKDLVLERFVSQSPAELLIAPRWGLKNYEFTNRLVNRMKEIGAYQGMNHHSQP
>NZ_CP013195.1|WP_025066477.1|898066_898684_+|3'-5'-exonuclease-domain-containing-protein-2
MKKIIYDKFDKNAITALPKITFPGRIITIISPEETERAVDYLLESDILGVDTETRPAFKKGEQHKVALLQVSTRDTCFLFRLNHTGMTPAILRLLENEKVPMIGLSLHDDILSLHKSADFKPGLFIDLQNVVGELGIQDLSLQKLYANLFSRKISKRQRLTNWDAPVLTDKQKAYAATDAWTCINLYEEIGRLKATGDYEIIHHA
>NZ_CP013195.1|WP_060544537.1|898737_899925_+|class-I-SAM-dependent-rRNA-methyltransferase
MNYKNVFLKRGKDESLKRFHPWVFSGAIERMDDGMTEGETVRVCTSDGDFIAVGHYQIGSIAIRVLSFRDVTIDADFWQNRLLSAFQMRMTIGVVGADGGNDTFRLVHGEGDLLPGLVIDCYGRTAVMQAHSVGMHLCRQEICEALLVVMGKRIDHVYYKSDTTLPFKAELGQENGFLVGGSQENTAVENGLKFHIDWLKGQKTGFFIDQRENRALLERYARGRQVLNVFCYTGGFSVYAMRGGAKLVHSVDSSAKAIELTNKNVEMNFPGDQRHEAFCEDAFKFLNAANGKYDLLILDPPAFAKRLTALRNALKGYTRLNAKGLERIKSGGLLFTFSCSQVVSKDHFRNAVFTAAAQAGRKVRILHQLHQPADHPINIYHPEGEYLKGLVLYVE
>NZ_CP013195.1|WP_051559343.1|899987_901280_+|tRNA-lysidine(34)-synthetase-TilS
MNRESFKYLVALSGGADSVALLCGLHSLGYRVEAVHCNFHLRGEESDRDERFCQALCKKLNVPFHIALFDTLTYAQLHKISIEMAARELRYRYFEQLRQDIGAAAVCVAHHRDDNAETVLLNLIRGTGISGLAGIAPRRDHIIRPLLNVSRTEIRAYLAAIRQDFVTDSTNLVDNAVRNKIRLNIIPLLAEINPSVSESIAKTAERMREAEKIIDHSLTEVAQHICEPRERGFAVSIAKLQNTVSPEYTLYHLLNNHGFRPAQIEQIANNLDAETGKEWHSETHAALIDRGFLLLEPIAPAPARPMTIPEDGTYCYADEIRFRCSSMAISTDFRPSRSPDEVTLDASHIRFPLIIRRVKPGDRLIPFGMRGSKLVSDFLTDSKLSLFEKRRQLVITDSSDQILWLVRLRPAEPYRVTSATKNVLIIKILG
>NZ_CP013195.1|WP_060544215.1|901606_902011_-|HU-family-DNA-binding-protein
MIKFEIVGKKNPQKKTETKYYAQISESTPLTLADIIVLIEKRSTVSSPDIKAVLDALQFEIIQALKNGYSVRLGDLGSFHLTISSNGLPTKEEAKKAGASLIKKVTVQFVKSAEMGRAFVLSALSFMQVPSKKG
>NZ_CP013195.1|WP_025066684.1|902107_904855_-|fimbrillin-family-protein
MKKMFKIQAMLLCAALMVVSCADDRMIDDQEEGDKGVAVSFNVSTAQDKMLQQQQQMPATRAVALSRLADEGLTLEDLATHKHAVQGASDLCLIETTVEGVNPVLPSADTRANVKTTIDNYFTASGYRSATPGFTPGTPDWFCGVKTNSNGTLTAYHPWLWGYRYGRFYAVYPYDAKAKMSPATYSGTPYVEFEVEQDVKNQKDLMTACSGEVEYQTRGTAPQTNLEFYHALTAVRFAVGQNLSWNKRITKVEIKNAYSKGQYTLPTQFNGKGAWVTSSLAARTDFTLDVSATPVDLRQAPNTVIMGNATDNYTFYMLPQDLTGVTVVVTLENNDPAHPSPAPNTITIPLTGKWKPGTSKTYKLSQNTSDWTFHLTATNPAAAAYDETQTGNYGITSYKQAPDGTQQAVAWKVVGYDANNDGNFSMSEKPTWLPSLSKTEGDGGTAADQGTATLTKDVGDLLAKRNKELKEATALGSASAPYDLSMHNYKGDNTNCNTANSYLISAPGVYRIPLVYGNAIENGSTNAKSYISNAPTGTPYEQYVLRKFKDHAGNDITNPWIEKTNSGANAGVDGAEVVWADAANLVHSPAIKHDGGDAFLDFEVKASDIQSGNAVVAVKKGGTIVWSWHLWFAPKDALDKIPVTNHQGVVYNFTKEALGWKPTQWSGSTYSSARTVKVKVEQTVANNGTKQVSEFTITQKPGDKKTGATTFYQFGRKDAFPGVDESKLAVGSHFTANADDNMSIQNGIQNPGSFYTGGSSWWSTPPTGYSYYNLWSADNTTTSYNDNSVVKTVYDPCPVGFKMPASNAFTGFTANGQSYGTMNVNGTDNSQTFQNNFGHNFWTDGSKTATINFPASGVRSYGGGSLSSVGSGGDYWSAVPYYKTHGYVLAFYSGGVLPLFSYYRPSGYAVRPVAE

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Crispr_ID: NZ_CP013195_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013195_4

934634-934727

Orphan

Consensus_repeat	Method
GTTGTCTGCTCTTTAGGAATAGCTTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013195_4

>merge|NZ_CP013195|4|934634-934727|CRISPRCasFinder
GTTGTCTGCTCTTTAGGAATAGCTTCCCTGAAAAAGCGTGCGAAGTCCAACATTGCCGTTCTCGCAGTTGTCTGCTCTTTAGGAATAGCTTCCC

>NZ_CP013195|4|4|934634-934727|CRISPRCasFinder
GTTGTCTGCTCTTTAGGAATAGCTTCCC	TGAAAAAGCGTGCGAAGTCCAACATTGCCGTTCTCGCA
GTTGTCTGCTCTTTAGGAATAGCTTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013195.1\|WP_060544224.1\|942268_943576_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271185
NZ_CP013195.1\|WP_025065808.1\|927348_927774_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_060544223.1\|934970_935924_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065809.1\|928176_928602_-\|DUF3408-domain-containing-protein	unknown	unknown	gnl\|CDD\|378750
NZ_CP013195.1\|WP_025065822.1\|938834_940556_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|291151
NZ_CP013195.1\|WP_060544222.1\|934067_934256_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065826.1\|943588_944818_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271185
NZ_CP013195.1\|WP_025065815.1\|932395_933676_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379114
NZ_CP013195.1\|WP_025065810.1\|928650_929994_-\|virulence-associated-protein-E	unknown	unknown	gnl\|CDD\|227832
NZ_CP013195.1\|WP_025065824.1\|941235_941451_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP013195.1\|WP_082627474.1\|922533_925686_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NZ_CP013195.1\|WP_060544220.1\|930775_931081_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP013195.1\|WP_060544221.1\|933891_934071_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065814.1\|931792_932389_-\|RloB-domain-containing-protein	unknown	unknown	gnl\|CDD\|379341
NZ_CP013195.1\|WP_025065821.1\|937858_938842_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375587
NZ_CP013195.1\|WP_025065825.1\|941868_942285_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065812.1\|930471_930771_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP013195.1\|WP_025065823.1\|940459_941002_+\|Mov34/MPN/PAD-1-family-protein	unknown	unknown	gnl\|CDD\|131309
NZ_CP013195.1\|WP_025065817.1\|935980_936205_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065820.1\|936858_937857_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132838

Protein	Function_ID	Function_description	E-value
NZ_CP013195.1\|WP_060544224.1\|942268_943576_-\|site-specific-integrase	gnl\|CDD\|271185	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain. IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.08693e-43
NZ_CP013195.1\|WP_025065820.1\|936858_937857_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132838	cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.	1.61563e-57
NZ_CP013195.1\|WP_025065809.1\|928176_928602_-\|DUF3408-domain-containing-protein	gnl\|CDD\|378750	pfam11888, DUF3408, Protein of unknown function (DUF3408). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.	2.33561e-31
NZ_CP013195.1\|WP_025065822.1\|938834_940556_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|291151	pfam14461, Prok-E2_B, Prokaryotic E2 family B. A member of the E2/UBC superfamily of proteins found in several bacteria. The active site residues are similar to the eukaryotic E2 proteins but lack the conserved asparagine. Members of this family are usually fused to an E1 domain at the C-terminus. The protein is usually in the gene neighborhood of a gene encoding a member of the pol-beta nucleotidyltransferase superfamily. Many of the operons in this family are in ICE-like mobile elements and plasmids.	1.28026e-07
NZ_CP013195.1\|WP_025065826.1\|943588_944818_-\|site-specific-integrase	gnl\|CDD\|271185	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain. IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	8.89826e-50
NZ_CP013195.1\|WP_025065815.1\|932395_933676_-\|ATP-binding-protein	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	1.50389e-15
NZ_CP013195.1\|WP_025065810.1\|928650_929994_-\|virulence-associated-protein-E	gnl\|CDD\|227832	COG5545, COG5545, Predicted P-loop ATPase and inactivated derivatives [General function prediction only].	1.22775e-27
NZ_CP013195.1\|WP_025065824.1\|941235_941451_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	4.18009e-05
NZ_CP013195.1\|WP_082627474.1\|922533_925686_-\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP013195.1\|WP_060544220.1\|930775_931081_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	4.8703e-08
NZ_CP013195.1\|WP_025065814.1\|931792_932389_-\|RloB-domain-containing-protein	gnl\|CDD\|379341	pfam13707, RloB, RloB-like protein. This family includes the RloB protein that is found within a bacterial restriction modification operon. This family includes the AbiLii protein that is found as part of a plasmid encoded phage abortive infection mechanism. Deletion within abiLii abolished the phage resistance. The family includes some proteins annotated as CRISPR Csm2 proteins.	7.82175e-09
NZ_CP013195.1\|WP_025065821.1\|937858_938842_+\|hypothetical-protein	gnl\|CDD\|375587	pfam18144, SMODS, Second Messenger Oligonucleotide or Dinucleotide Synthetase domain. Nucleotide synthetase enzyme of the DNA polymerase beta superfamily. Experimental studies have demonstrated cGAMP synthetase activity in the Vibrio cholerae DncV protein, a member of the SMODS family. The diversity inherent to the SMODS family suggests members of the family could generate a range of nucleotides, cyclic and/or linear. The nucleotide second messengers generated by the SMODS domains are predicted to activate effectors in a class of conflict systems reliant on the production and sensing of the nucleotide second messengers.	1.23613e-10
NZ_CP013195.1\|WP_025065812.1\|930471_930771_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	4.50539e-10
NZ_CP013195.1\|WP_025065823.1\|940459_941002_+\|Mov34/MPN/PAD-1-family-protein	gnl\|CDD\|131309	TIGR02256, Uncharacterized_protein_y4qB, integrative and conjugative element protein, VC0181 family. This uncharacterized protein is found in several Proteobacteria, among them Rhizobium sp. NGR234, Vibrio cholerae, Myxococcus xanthus, and E. coli strain ECOR31. In the latter, it is part of an integrative and conjugative element that is readily induced to excise and circularize.	4.835e-15

>NZ_CP013195.1|WP_060544222.1|934067_934256_-|hypothetical-protein
MTKPPCNRKADIVGRHKAQAIGKNALSGWQTLEASRLGGMSPDMAFFHQYQPIKLKIYEQND
>NZ_CP013195.1|WP_060544221.1|933891_934071_-|hypothetical-protein
MKTSGSTASTKDATRAYQVYLSDQPTDLFWLTVKNGKLTEIEFKVQPGQPGGLETEKIK
>NZ_CP013195.1|WP_025065815.1|932395_933676_-|ATP-binding-protein
MIRDFWVENYLSIRDRQELDFVSKTQDEFLSYEISKGVFLNKLGILYGANASGKSNMLYAIQNIFDLLYRSQTDITDKVKTAPPFELTKEKPIKMHISFYAEAVRYDYDVEYFPDYIVREELYYYPNNSKALFYERKFKNKGVQADTKFGTSLGLKAETQKTLIENTLNNHSVLSTYRKVAFKEDIQPIAKLFSWIEHHVHEINGDGNRNFIEEVKDICKDTKLINFYRLMLRKADLNISDFQVVKSLDSIPQKLRQMIMEDDELTEKAKKRMLEDDREDILFVNQSADGNFNIPWRLQSQGTIRYLKLLHFLYDLITGSHLYLLDELDEDLHYDLLTYFLNVFIYNSESSQLMFTSQEISLLSEDLLNEHREIVWFVEKSHETASSEYSRGDSFGLHKNLSLYNSYKIGRLGAKPELGSYFIDLE
>NZ_CP013195.1|WP_025065814.1|931792_932389_-|RloB-domain-containing-protein
MGKLADAIMILGEGPTESFYMNSLRDYYPAQLKSIEPKIPKHSNLTELEKKIEEGISKGYSKIFCMIDMDNKKKGKEKNDYLELKRKYENPIVKNDEGINCEVKFFETERCTELFFLYYFKYTTKEYLTSNEVVNELEKKCGYQKNLKFFRKGLHKIFKEKGGTLRTAITNANNSCKDKVRGYTYSELGSMLQALSIT
>NZ_CP013195.1|WP_060544220.1|930775_931081_+|helix-turn-helix-domain-containing-protein
MESVKNLNMDADEMLIVLSALEGVNRRIKEVAQTHKPLFGDEHFLTGKDVCERLYISPRTLQDYRDRRIIPYTQFAGKILYKASDLNSMLEENYRNNNIIT
>NZ_CP013195.1|WP_025065812.1|930471_930771_+|helix-turn-helix-domain-containing-protein
MGYFIITDSNWAKLRNEILSLAETCHKAFGEQSRHMDWLHNGDVCKLLNISKRTLQHYRDTGVLPFAQIGHKCYYKREDVERLLNTKSEKSRKDKPVNR
>NZ_CP013195.1|WP_025065810.1|928650_929994_-|virulence-associated-protein-E
MQALSECLELTHSLNNFTLGNQTKHIMKTSVDKGKSEGGNNMPRPRRISSKNSEIEAYLSTHYEFRFNTVLGRTEYRRKSDGGFTKVGRYEINTLRREIDNDIGIIGSSDNLYSIIESSFSPRINPIQEYFKNLPSVDLSSSSSFSLKAIPELASCVAVRNSDKWLVAVVANAMDDRECRNHTCLVLTGEQGKFKTTFLDLLCPPALHGYSYTGKIYPQEKDTLTYIGQNLIVNIDDQLKALNKRDENELKNLITCPMVKFRMPYDKYVEEHPHLASFVASVNGNDFLTDPTGSRRFLPFEVLSIDIKRAKAISMDSVYAEAKALLNAGFRYWFDDDEIAELYLESEDFQVQTAEMELLLRCFEKPTEDNPHCSYMTTTEILAYLGIYTRYPLTSKRMGEALKRAGFEKVSKRRDGGCPIYVYKVRKLLPCPLLDSCSSLTIILWPK
>NZ_CP013195.1|WP_025065809.1|928176_928602_-|DUF3408-domain-containing-protein
MNRQESNERTERKSLSSYLGEKDEVEEQPQAKAPSKETDCREVIASEPSEPTLHTENATVQRRISAKMRKKTLEAYKQAYLVPTKLSERKAVYLSRATQERADFIVRRLGDRRSNLSSFVENIVRLHLEEYGEDIEKWRRL
>NZ_CP013195.1|WP_025065808.1|927348_927774_-|hypothetical-protein
MKRYKGKAARWQQQDKEEQRMNKTEFIKVRCTSEEKQRIKSKAESAGRKFSDYCREILLNREVTAVPKMTENEREAIAILQQTGKFYGQVSNLIKVKDERWVLITKNLSLCAKEAFKRFYDPHFRVEDEVYKVLNMKRNDR
>NZ_CP013195.1|WP_082627474.1|922533_925686_-|TonB-dependent-receptor
MQLKASAGGVSTGPYVMGVAGGSSTEKALESPAPNQKTPKIVGVVTDSKTGEPLIGATIKVQGTSTATVTDVDGRFEIRASKGSTLEVSYLGYTSKKIKVGDVKVLSITLSDDVRTLEGAVVTAFGTTQKKETVTGSIQTVRPSDLKVPATNLSTAFAGRLSGVIAYQRSGEPGSNGANFFVRGISTMSGATSPLIVMDGVEISQADLNAIDPEIIESFSVLKDATATAMYGTRGANGVLIIKTKSGADLDHPIIGLRVENWINTPTKRPRTVDGVTFMRMYNEAVTNQQSGDVLYSEDKINGTIQNLNPYVYPNVDWYKEIFKEVTWNQRANFNVRGGTAKITYFMNINASHETSMLRDVSGKYFSYHNGTNYMKYAFQNNVDFHLSKTATLALHLNVQMNNMHGMLAASNGGGIANVFNSIMGTNPVDFPIMYPKGNDEWYHWGSLQAGNYNPDNPMALATIGYRDVFESTVVANLNYDQKLDFITKGLSFKALFSFKNWTNNLKFRVQNYNRYQLTDYAANEAAEGGYDMTIKPIGVPQKYLLNNYFGTSGDRRYYFQAFLDYNRRFGSHNVGGMILFNIDEYNSNVNSDFLSSLPKRRMGFAARASYDYKSRYLLEFNAGYNGSESFAKGHRWGFFPSVSLGWNISEEAFFEPLKKVIQQVKLRGSYGLVGNDQVGGARFAYQAIVNLTGGAGFATGYGSQGRSLSGPSFSRFENPNLTWEVGHKLNIGMDLRFFDALSITVDAFREIRDHIFQTKGSIPNYFGTAATTIYGNLAKVKNWGVDLAVNYGKKFNDDLSAEFRGTFTFARNKVLEYDEAADTRPALRQVGRSLNTYLGYVADGLYIDEADIAHSPKSTLGNIAIAPGDVKYKDQPDQNGEYDGKIDANDRVQIGHPYVPEIIYGFGPSIAYKKWDFSFFFQGQANVSLMMSGFEPFGTQSKRNVLQWIADDYWSKDNQNPNARYPRLTKYNNNNNMQASTHWLRNAAFLRLKNLEVGYKFKFGRIYASATNIVTFSGFKLWDPEMGGGAGMSYPLQRTFNVGLQLTFK
>NZ_CP013195.1|WP_060544223.1|934970_935924_-|hypothetical-protein
MKTRLFSILAATALALFMAACANSDDIAQVENKQKGNTETTEDLTTFVEEDNAPTTRTTAEYDGSGLNFYWTEGDRLWVKNDAESPTLKQDAKNNIAEKLTASTVSGGVQRADKAKFWFDGTHTYPTYPVRYTGKNSTSGDKVTIKAEQLQTIPNDASHLGESGDCGTAVATKIGGRYHFILKHEAAYLTLMPYNSPQQINTPLTQIKVTADKAICGQFDFDDNGINLSSRPTPTPANQSITLKLKDADPQQGFVTTPQALTPATNAATIVLAPGTCSTLTIEYTFYNTYKNKNITTSKTYNNVVLTAGKNKSVKAI
>NZ_CP013195.1|WP_025065817.1|935980_936205_-|hypothetical-protein
MNKKQVTTQGKKRKPYVRAEVELISVKADYHLLEISFPNSGGHQKAEDDGNDLNAKRGFFLDDEVGGDFNMWED
>NZ_CP013195.1|WP_025065820.1|936858_937857_+|patatin-like-phospholipase-family-protein
MTKKPFKILCIDGGGIKGIYSAELLVKFEEVFDCTVSECFDMLCGTSTGGIIALAASLKIPMSDVVKFYQKNGPSIFNESVKHRPGGCAYLRSKQIAFGGKYSAKPLRLALECVFKNKKIAESNNFLCIPSYNTLTANPRVFKKDFDNFTEDDRKSYVDVALATSAAPTYLPVMEIEDDQFVDGGLWANNPILVALTEYLYKFAQDKRFDGLEILSISSCQKTQGEKHHKLNRSFIDWADTLFDAYSIGQSKSTMVLLSKLKRYLSFPFDFHRIENIVLSPEQDKIIDMDNASEASIRLLVKIADNTAMNEKMRPEIAHYFQTKKTLNPKDY
>NZ_CP013195.1|WP_025065821.1|937858_938842_+|hypothetical-protein
MANNHEQFVAFQNAIKATSTRRKTLKTNRDALRAKIKKYFKETHRDYIQPTFYWQGSYAMCTLLNPIKDESGLGAYDLDDGIYFESDDINDRKSIDWYHQEVYEAVKDHTENGADDLDPCVRVQYADGHHIDLAIYFLHTTEDKTMLAHRAEPWHESNPDEMIDWFKDECNNKTKMRELVRFMKAWCEYKRNEGIKMPSGCIMSMLTSKYYQWNDENRYDIAMKDILKNMYDDLSIEDHFHCWRPVNPYEDLFDNYTKGRKDSFLKELKSFKEDAERAIASKNQHDGCVRWQKHFGDRFSCSTAKDIDEDTSQQRFSGTINKNSQYA
>NZ_CP013195.1|WP_025065822.1|938834_940556_+|ThiF-family-adenylyltransferase
MPDVEAALNACFLVISKEYDIEKVNSIPQLEHLPKTHIWKIQIPALVSGKAEDIETYILFPEAFPYSMPCVIIPDDRFRYLPHISVKTHKLCLYEDGEVYDTENIEGLIRDNIDRTRRWIENYYGRDNSDEYSKEIRSYWNEQYDGENNVDDHWILLGDIPTETCKMTGVAYTNKYLNNGSPYVMNVIASDENDKTLAIIKLHHKTIDIPVLYIASLKTPNVPPFCMTGQEVIDRISDNEDQKMFKKHLNHFKNINVLFPIGLNYAVGGICIRGLKVSRNGYREGALASFKVLTSFENKNKKLDRLHLSVYSNQRIAERTAGAMMMERRFLVVGLGSIGSNLCYYLNGYNNVVFDLIDWDSLTIDNIGRHLLGFEYINQQKSYAVAHYLQQYRPDRKVYASQKQLQQQKKEEIDKASAIFVCTGDVMSEKWLLSQMIEGSVNKPAFILWLEPYGISGIMIYVNPKNKESIKRLKEKANGCFMDFCLIKREEYEYGEKLTKHDAGCNGSYSLYSANDVTLFLSSMFPIIDQLLEKPSESRCYQWVGNTNIATEKGISLVSSSGLSKNTLQELPM
>NZ_CP013195.1|WP_025065823.1|940459_941002_+|Mov34/MPN/PAD-1-family-protein
MGRKHKYSNRKRNKPRVIVGIVKKHFARTANVNIADYHFEIKQEVVDELKSNAQHEGNELCGVLMGAQIDDNRYRISKISPPCVKRHTRCGCERDAAMANQFIEEDYEQSEHTRFYIGEWHTHPEDNPTPSAVDYNSIEDNYQTASLVVPFMIMIVVGTEAFHISVFNGKKFVVAELEIV
>NZ_CP013195.1|WP_025065824.1|941235_941451_+|helix-turn-helix-transcriptional-regulator
MNTKDYNRIKVVLVKKKHTSKWLAVQQGKGQSTVSKWCTNTAQSGLEMLFQIAKCLGVEVKDLIREYVNNN
>NZ_CP013195.1|WP_025065825.1|941868_942285_-|hypothetical-protein
MKTNDNTKVVTNAAYHRSYFDWGRNMQVVRKGKGEIAMTESELVKFFGVTWRKLNHKLQTIMKFPNLHPDERDAGQEEVINGRECVRYASLYPLSTIIALSFLLDSMEAHLFRKYVCRRLQKPITTVTPIILLGKTDN
>NZ_CP013195.1|WP_060544224.1|942268_943576_-|site-specific-integrase
MRSTFKILFYINRQKTKADGKTGILCRITIDGKSITITTGEECKPSEWNAKQGLTTEKKTNQRLYEFKELVEKAYRDILTRDGVVSAELIKNHLQDIATHPTTLLAMSKAELQAVKESVGRSRAESTYHNLSHSDKSLREFVESKGLQDMPISTITEDLFEEYRFFLKKRGLKGTTINNYLCWLSRLMFRAVSQRIIRCNPFEHAKYEKEEKKIRFLQKSDVAKLMVMTMNDREAEQARLMFVFSCFTGLAIADMEHLQYKHIQTAADGRKYIRKERQKTKVEFVVPLHPIAEAIIRHCLEEQKGNEEQQTVKEKGKKHIFPRECSRSVIDGRQSFVGKACGIKERLSFHMARHTFGTMSLSAGIPIESIAKMMGHASLSSTQIYAHVTDKKISEDMDRLITKQSVKRKETAEREVSKPSDIPICKMEKRHENKR
>NZ_CP013195.1|WP_025065826.1|943588_944818_-|site-specific-integrase
MKQEKMKVLLYLKKSSLDRSGKAPIMGRITLGRSIAQFSCKLSCNPDLWNPRESRMDGKSREAVEINGRLENLLLSVQSAYQSLLSKGCPFDATEVKEQFQGSVQTRCMLIERLDMLIKEKENHVGIDIKEGAIHGYHSARIHLQKFIQRKYKVSDLAFSQLTENFINEFRQYFLGECGFQESTFYNVATHLKTVCRLAYREGLADTLLFDKAKVSKGDKKLPKALDWEALDKLKALRFDDLEEEMETARGIFLFACYVGAAYCDLMELKKSHLVRDDEGNLWLKFNRQKTGVLCSVKLLPEAIRLMEKLHSDERETLLPYMKYKNYQTCLKALRLRAGISFPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFDRFFAFTEDLRLTI

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Crispr_ID: NZ_CP013195_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013195_5

1032990-1033100

Orphan

Consensus_repeat	Method
GTAGGGGTACAATCGATGGAAAACAGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013195_5

>merge|NZ_CP013195|5|1032990-1033100|CRISPRCasFinder
GTAGGGGTACAATCGATGGAAAACAGCGAAAACTGGTCTTCGTAGGCCTACGAAGATCAAAAAGCGAGAGAAACTGCTCGTCGTAGGGGTACAATCGATGGAAAACTGCGA

>NZ_CP013195|5|5|1032990-1033100|CRISPRCasFinder
GTAGGGGTACAATCGATGGAAAACAGCGA	AAACTGGTCTTCGTAGGCCTACGAAGATCAAAAAGCGAGAGAAACTGCTCGTC
GTAGGGGTACAATCGATGGAAAACTGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013195.1\|WP_025065863.1\|1033652_1033949_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|371235
NZ_CP013195.1\|WP_036888671.1\|1027901_1028522_+\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
NZ_CP013195.1\|WP_025065866.1\|1039250_1039454_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|376855
NZ_CP013195.1\|WP_025065858.1\|1027239_1027821_+\|uracil-DNA-glycosylase-family-protein	unknown	unknown	gnl\|CDD\|381682
NZ_CP013195.1\|WP_025065864.1\|1034093_1035860_-\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP013195.1\|WP_021583210.1\|1042275_1042902_+\|cytidylate-kinase-like-family-protein	unknown	unknown	gnl\|CDD\|379060
NZ_CP013195.1\|WP_060544236.1\|1039474_1040785_-\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|272979
NZ_CP013195.1\|WP_025065860.1\|1030644_1031724_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NZ_CP013195.1\|WP_025065867.1\|1040915_1042301_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240548
NZ_CP013195.1\|WP_025065856.1\|1023451_1026016_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP013195.1\|WP_025065861.1\|1031739_1032807_-\|mannose-1-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|223906
NZ_CP013195.1\|WP_060544233.1\|1029456_1030638_-\|GDP-L-fucose-synthase	unknown	unknown	gnl\|CDD\|187550
NZ_CP013195.1\|WP_025065865.1\|1036832_1038236_-\|C10-family-peptidase	unknown	unknown	gnl\|CDD\|366737
NZ_CP013195.1\|WP_060544235.1\|1038524_1038917_+\|DUF1573-domain-containing-protein	unknown	unknown	gnl\|CDD\|377880
NZ_CP013195.1\|WP_060544234.1\|1036001_1036760_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065855.1\|1020704_1022033_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065857.1\|1026193_1027243_+\|endonuclease	unknown	unknown	gnl\|CDD\|197338
NZ_CP013195.1\|WP_025065859.1\|1028596_1029025_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275056
NZ_CP013195.1\|WP_025065862.1\|1033255_1033600_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_082627476.1\|1022070_1023438_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013195.1\|WP_025065863.1\|1033652_1033949_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|371235	pfam10771, DUF2582, Winged helix-turn-helix domain (DUF2582). This family is conserved in bacteria and archaea. The function is not known. The structure of two proteins in this family were solved using NMR and shown to adopt a winged helix-turn-helix fold. Structural analysis shows that these proteins form an unusual dimeric conformation. This dimer was shown to be similar to that found in the FadR and TubR wHTH domains. It was suggested that these proteins are not very likely to bind to DNA.	1.51467e-05
NZ_CP013195.1\|WP_036888671.1\|1027901_1028522_+\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	1.56418e-114
NZ_CP013195.1\|WP_025065858.1\|1027239_1027821_+\|uracil-DNA-glycosylase-family-protein	gnl\|CDD\|381682	cd10032, UDG-F6_HDG, Uracil DNA glycosylase family 6, includes hypoxanthine-DNA glycosylase and similar proteins. Uracil DNA glycosylase family 6 hypoxanthine-DNA glycosylase (HDG) lacks any detectable UDG activity; it excises hypoxanthine, a deamination product of adenine, from double-stranded DNA. Uracil-DNA glycosylase (UDGs) initiates repair of uracils in DNA. Uracil in DNA can arise as a result of misincorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	1.92043e-44
NZ_CP013195.1\|WP_025065864.1\|1034093_1035860_-\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP013195.1\|WP_021583210.1\|1042275_1042902_+\|cytidylate-kinase-like-family-protein	gnl\|CDD\|379060	pfam13189, Cytidylate_kin2, Cytidylate kinase-like family. This family includes enzymes related to cytidylate kinase.	1.65066e-60
NZ_CP013195.1\|WP_060544236.1\|1039474_1040785_-\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|272979	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. [DNA metabolism, Degradation of DNA].	9.20862e-123
NZ_CP013195.1\|WP_025065860.1\|1030644_1031724_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP013195.1\|WP_025065867.1\|1040915_1042301_+\|MATE-family-efflux-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	6.96205e-134
NZ_CP013195.1\|WP_025065856.1\|1023451_1026016_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	0.00049403
NZ_CP013195.1\|WP_025065861.1\|1031739_1032807_-\|mannose-1-phosphate-guanylyltransferase	gnl\|CDD\|223906	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane].	1.53372e-130
NZ_CP013195.1\|WP_060544233.1\|1029456_1030638_-\|GDP-L-fucose-synthase	gnl\|CDD\|187550	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs. GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	7.04839e-153
NZ_CP013195.1\|WP_025065865.1\|1036832_1038236_-\|C10-family-peptidase	gnl\|CDD\|366737	pfam01640, Peptidase_C10, Peptidase C10 family. This family represents just the active peptide part of these proteins. Residues 1-120 are not part of the model as they form the pro-peptide, which before cleavage blocks the active site from the substrate. The catalytic residues of histidine and cysteine are brought close together at the active site by the folding of the active peptide.	1.3799e-27
NZ_CP013195.1\|WP_060544235.1\|1038524_1038917_+\|DUF1573-domain-containing-protein	gnl\|CDD\|377880	pfam07610, DUF1573, Protein of unknown function (DUF1573). These hypothetical proteins, from bacteria such as Rhodopirellula baltica, Bacteroides thetaiotaomicron, and Porphyromonas gingivalis, share a region of conserved sequence towards their N-termini.	4.4568e-43
NZ_CP013195.1\|WP_025065866.1\|1039250_1039454_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|376855	pfam02609, Exonuc_VII_S, Exonuclease VII small subunit. This family consist of exonuclease VII, small subunit EC:3.1.11.6 This enzyme catalyzes exonucleolytic cleavage in either 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.	3.80157e-11
NZ_CP013195.1\|WP_025065857.1\|1026193_1027243_+\|endonuclease	gnl\|CDD\|197338	cd10283, MnuA_DNase1-like, Mycoplasma pulmonis MnuA nuclease-like. This subfamily includes Mycoplasma pulmonis MnuA, a membrane-associated nuclease related to Deoxyribonuclease 1 (DNase1 or DNase I, EC 3.1.21.1). The in vivo role of MnuA is as yet undetermined. This subfamily belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.	3.16089e-09
NZ_CP013195.1\|WP_025065859.1\|1028596_1029025_+\|hypothetical-protein	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	0.00445389

>NZ_CP013195.1|WP_025065861.1|1031739_1032807_-|mannose-1-phosphate-guanylyltransferase
MAQSNNHLVIMAGGVGSRFWPMSTSENPKQFIDVLGVGRTLLQLTFDRFAGVCASDNVWVVTNKAYLDIVKAQLPEIAVDHILTEPCRRNTAPCIAYVSWRIKAQDPKANVVVTPSDHIITDPVGFRRVITMCLQFTSETDAILTLGMKPTRPETGYGYIQADMSTTSARNKEIYRVDSFREKPDLQTAQKYISNSNYFWNAGIFIWSVSTIVNAFRVYQPAISKIFESMLNIYGTDKEQALIDERYPECENISVDYAIMEKAEEIFVCPADFGWSDLGTWGSLWTQTKHDLYGNSSIGDNITMYDSHNCIVHTTQEKKVIIQGLDDYIVAEYDDALLVCKLSEEQKITQFIETK
>NZ_CP013195.1|WP_025065860.1|1030644_1031724_-|GDP-mannose-4,6-dehydratase
MKAALITGITGQDGSYLAEFLIEKGYEVHGLLRRSSSFNTGRIEHLYLDEWVRDTKKQRLINLHWADMTDSSSLIRIIREIQPTEIYNLAAQSHVKVSFDVPEYTAETDAVGVLRLLEAVRICGLDQTCRIYQASTSELYGKVQEVPQRETTPFYPRSPYAVAKLYGFWIMKNYRESYGMYCCNGILFNHESERRGENFVTRKITLAACRIAQGFQEKLYLGNMDARRDWGYAKDYVECMWLILQQPQPDDFVIATGEMHTVREFCTLAFREAGIDLRWEGQGIEEKGIDAATGKVLVEVDPKYFRPCEVEQLLGDPTKARKQLGWNPTKTSFAELVKLMVAHDMKFVKKLYLKAQLPE
>NZ_CP013195.1|WP_060544233.1|1029456_1030638_-|GDP-L-fucose-synthase
MLSKDSKIYVAGHRGLVGSAIWNNLLDRGYHNLVGRTHHELDLTDQQHVRHFFDKERPDAVVLAAAFVGGIMANSLYRADFIMQNMKMQCNVISESFAHDVQKLLFLGSTCIYPKAAPQPMREDALLTSPLEYTNEEYAIAKIAGLKMCESYNLQYGTNYVAVMPTNLYGPNDNFHLENSHVMPAMMRKIYLADLIKKGDWRSIEADMNKRPVEGITGSHSHEEILHVLAHYGIYNNKVVLWGTGHPLREFLWSEDMADASAHILLHVDFRDIIGIDNYSSVFYGRKTDGAINRNSSDRRGGAIPSLGEIRNCHINVGTGKELTIRDLSVLIAQTIGFDGTIEFDTTKPDGTPRKLTDVSKLHDLGWTHHVEIEEGVCRLFDWYRNSIATTIA
>NZ_CP013195.1|WP_025065859.1|1028596_1029025_+|hypothetical-protein
MKKLFLASLMMLSLSTACSSLTQGDTKMESMKQQQKVLKLNTQLNKLKIEHQKAVDETAQLQQKAAEANAAANASSYTSYSTSDASATAKAAKERAKTLNKVKKANNKLAASQKKIQKLEKKINELNAKLAKLTQKVKFVNQ
>NZ_CP013195.1|WP_036888671.1|1027901_1028522_+|uridine-kinase
MTIIGIAGGTGSGKTTVVKKIVETLPPHYVAVVPLDSYYNDTTGMTEEERHAINFDHPDAFDWKLLIKQVNDLREGRAIEQPTYSYLQCNRLAETIHVEPKPVIIIEGIMTLLNKKLRDVMDLKIFVDCDPDERLIRNIQRDTIDRGRTVSMVVDRYLQVLKPMHEQFIEPTKRYADLIIPQGGENVKGIGILCKYIEGLFPSDQG
>NZ_CP013195.1|WP_025065858.1|1027239_1027821_+|uracil-DNA-glycosylase-family-protein
MKEIETHPFEPFMPENARILMLGTFPPAPKRWCMEFYYPNFQNDMWRIFGLIFFQDKDYFVVKGRKTFDIDKIIALLKERGIALFDTALRVCRTKNTASDKDLEIVQQSDLDAMLRQLKLCRAIVTTGQLATSVVVAHFGITSPKVGHFTDFVFEGRPMRLYRMPSSSRAYPMRVESKAEIYKSLLLSEFVSI
>NZ_CP013195.1|WP_025065857.1|1026193_1027243_+|endonuclease
MKKHLFAIALSLLVSMSASAEKKFAVYAIGFYNQENLFDTCHDAGKNDYDFLPNGSYKWDGLKYTHKLRNMARALADMGTDVLPQVGCAVIGLSEVENDKVLDDLTAQAPLHARGYKYIHIEGPDRRGIDCALLYNPALFKVKSSRLIPYVQELEKDSAFHTRGFLTVSGEMAGESLAVVVCHWPSRFSIPFYRESAARQVKAIKDSLLKENPACKVLVMGDMNDDPINKSMHEVLGAKANIEDVKADDMFNPWYNILAKEGKGTLQYQGSWNLFDQIVLTPNLLNRKGQKDFSTLRYWKNQVCRFDYLLQTEGAYKGGPKRTTAGGVWLDGYSDHLPVVVYLVKEQNQ
>NZ_CP013195.1|WP_025065856.1|1023451_1026016_-|TonB-dependent-receptor
MQKKLRLAVIALCYTSLTFAQSTKTQQQTAKSIDESAFTFSESQLGEDDDMSQNVTILNSNTNVYASQVGYLFSPVRFRYRAFNPKYNDIYINGMPVNDMESGQFRYSMIGGLNQQTRNVDFALPFENSNFAIAGMGGSNNYNFRAGNMAAGHRVSLLGSNGNYTLRGMYTYASGFNSKGWAIAANVTYRWANRGYAEGTFYNALSYFFAAQKQWNNGHSLSFSTWGNPTERTSQGASTDEAYWLANDYYYNPYWGYLNGHKRNSRVINDFAPSAILTWDWDINKDMRLTTSLFGKYSIYKSTKLNYSNAENPQPDYWKNMPSSFYDVWGERNATNPNTNAAALSDWQAAYDYWTASKANRQINWDRLYWANEQAGKNGNDALYYVQAKHNNNATITLSSVLTTHINKNKVWNVGLVLGQNEGRHYQTMDDLLGGKSFHNINTFALGDYPASSDAIHYDLNTAGPNRLGKLVYEGDKFGYDYRITLHKALVWSNYAITTGRWHLMVAGKIGATDMSRYGYMRNGLFPENSYGRSGRAKFGEGGGKGAVTLDAGRGHVFKLGIGYEWRAPQATTAFVSPEMNNDFVSNLKDEHVLSSDISYQYQNAWLHANLSGYYSRLDHITEWQNFFFDDVNSFTYVSMTGIKKEYYGVELGMRFKLTSYLDLKTLGTWSEAKNINNSRVAYLNSTSAKMTKDIVMNKGMRESGTPLTAGSIGLSFHQSGWYVDLNMNYYDRIYLSYTPSFRYQGTLTTMHSIDNEGNFIVPEQAKGHGGWMMSGSIGKSVRLRKGQLNFNLIVNNILNNQRIVTGGYEYSRSNYTVKDDGTLNKMRTYSFLHNPKKYYAFGTIGMFQVSYRF
>NZ_CP013195.1|WP_082627476.1|1022070_1023438_-|hypothetical-protein
MKRLTYIIMIAVGTLLASCMGSDYAGPDLDQKGTPWGNNSLTESNVITVAQLKNAYQAAISGNGYKEITDDQQLKVIVTGNDIQGNLYQQIAVQDKTGALIVGIGATGLHGYLPVGQEILINLKGLIIGGYGQQAQLGGIYTNATTGAQSVGRMNRFTWQEHFKLIGEANASKAQSLAEEFDLSRIADTKYLESNAGKLMTIKKVAFVGADGKVVYAPKSQKDKAGSVNRQLKDLSSDTNISTGNLVVRTSTFANFANEIVTKDTINLTGIFTRYRNTWQVLVRSTADIEKTVLAYFSETFAKGKGKFTINNVKLSGGLNQVWSHATYNGISYMKAGSYASGKNNDAESWLISPVIDLSKIKKATLSFKQVINAYFGKLEDEATVCIKTEKGKWEPLKIGYPAKPEKGFTTFSTPGATQRIDITKYAGNKIQVAFIYKGSSTAAGTWEIKDFNIE
>NZ_CP013195.1|WP_025065855.1|1020704_1022033_-|hypothetical-protein
MKKFIYSMFALAMTAMTFISCEDVPAPYNYPTKNEEKPQIADPQGTGTKADPFNVSAAHNFIKAGTGLDQEVYVKGKIVSVQEVDAAKYGNATYNISDDGTANNQLKVFRGFALGKNKFKAEGEIKTGDDVIICGKLIDFNGTHEFTQGNFIYSLNGQTAGDPSSEGDPKGSGTQTDPYNVAGALKVIKALKADVNSSDMYVKGKIVSINKIDVGYGNATYYISDDGTANNQLYIFRSKGLGNQKFTSDKDLKVGDDVVVFGPFINFKGNTPESVTNKTYLYSLNGQTSGGVTPPTPSGDVVTISGKTVTMTNKTVTASTETIEVDLAKQGFEHNKPVTTFTLTDGTIITFDANGETNVPLFHSKTKGVRVYKNNTITINGKKAIAKIVFTCDSFKDTDYVGNAKATIKFDGVKAVYTNVFTEASGGGVQLRVQKITITYAN
>NZ_CP013195.1|WP_025065862.1|1033255_1033600_-|hypothetical-protein
MQYKREIISVLTEAGEEGLSVRKIAYHVFNACNSLFCAVSYDEIYRSVATYLASNSKIPESVIMRTDRRGIYRLNLESKETQQLMIQFQFADESVVDPFIDHTSSEEDLSLSLF
>NZ_CP013195.1|WP_025065863.1|1033652_1033949_-|winged-helix-turn-helix-domain-containing-protein
MAEKKETTKKTTATKAETTKKPVAKKATTRKEEVLINAESVGFRAGDVYQTLATAAKALTVAEIAKAAKISTEEVLLGMGWLFKEGKIKNEDSKIVLA
>NZ_CP013195.1|WP_025065864.1|1034093_1035860_-|aspartate--tRNA-ligase
MYRTNTCGELRLSDAGKNVTLAGWVQRVRKMGGMTFVDLRDRYGITQLVFNEADDKELCDKANRLGREFCIQIRGEVSERQSKNNNIPTGEIEILTHELNLLSDSLTPPFTIEDNTDGGDDIRMKYRYLDLRRPSVRKNLELRHRMTILIRNFLDAQNFIEVETPILIGSTPEGARDFVVPSRMNPGQFYALPQSPQTLKQLLMVAGFDRYFQIAKCFRDEDLRADRQPEFTQIDCEMSFVDQEDVIGLFEDMARHLFKEVRGVKLPAKLQQMTWHEAMRRFGSDKPDLRFGMEFVELMDVLKETGDFGVFNTAEYIGGICVPGCANYSRKQLDEITEFVKRPQIGAKGLVYIKFNTDGTVKSSIDKFYSPEVLSQVKKKMGAKDGDLVLILSGDKPNRTRVQLCALRLEMGDRLGLRNKDQFECLWIVDFPLFEWSDEEQRLMATHHPFTMPNPDDIPLLDTHPEQVRAKAYDFVCNGIEVGGGSLRIHDGQLQEKMFKILGFTEERAMAQFGFLINAFKYGAPPHAGLAFGLDRFVSIVAGLDSIRDCIAFPKNNSGRDVMLDAPSSIDQKQLDELQIRVDLSQEN
>NZ_CP013195.1|WP_060544234.1|1036001_1036760_-|hypothetical-protein
MATRLYWIVYWLALPILTGCSSSPDKNIVLPFKLEKDYFEIFQGDTITVFIKNGSGDISVKHTGNLDVEYSRNMEDAKKLGQLNITGSKPLVETITLVDNQTKEVQQLMVKVIPPYVCLEKSKSSDPYWKGPAGIFLIEDAKRSFYMCNYAFRKYRYVGPALCHGTYDIVIKDNRPIILLLQSNNSKFVREFSLSEKSDKAIEVLHKLSLSTLLPGDESCELPLRLHDEKIGSSVTVGLLYKKECLPEKILE
>NZ_CP013195.1|WP_025065865.1|1036832_1038236_-|C10-family-peptidase
MKTTTMLVGLGLILVGLTSLTSCSKYDEQQMGISKNDVLQLSEEEYISIAFDNPKEISATQAIQTVQEFAKNSMTRSSQISPIVEKKYYINNLLTRSKLKGAISIPVYQIKLSNKVDGGFALVSGDERCPSVIAFIEKGSLSDTISNKAASMMIKNSEAATARIIYHYEYLKDSLRIQTLNKLHTAFHSDLITYDDVKEKIVVKGENLTRGEWIPQPETGTLIREVEPLLQTEWGQSSPFNNELGSIQNGKEKVMRQVGCVGTAIAQIVAHYEAIHSVYGHTLNWPLIKERYYIDSYTSTEVKQQVAYLCKHVAYGIKTEWHAEDGSGGANFVNARSYLETMGLTFDLDRRNRGYDMYVPMIIASLDNKYPVLVGGDEEKETRSTDGKNGGHCWILDGYQIRRRPISTMLKAIIKKNDVYIHANFGWKGYESGYYMVDRNDTYLTFQTAANGNYNKNLHIYPRVRRK
>NZ_CP013195.1|WP_060544235.1|1038524_1038917_+|DUF1573-domain-containing-protein
MKKFLSIALMLFACLTYASAQQQAEIKFDKVTHDFGTFSETNPVQETVFTFTNVGQAPLIINQAVASCGCAVPSYTKEPIKPGQKGQIKVTYNGKGKFPGHFKKSITVRTNGVPEMTRLYIEGVMKEASK
>NZ_CP013195.1|WP_025065866.1|1039250_1039454_-|exodeoxyribonuclease-VII-small-subunit
MKQNIKYEDAVRRLEDIVTRMENNELDIDTLSEQLKTAQQLIKLCKDKLTKTDGEIKKLLDKHSTGH
>NZ_CP013195.1|WP_060544236.1|1039474_1040785_-|exodeoxyribonuclease-VII-large-subunit
MTDQEQTPQLSLYELNLLVRETIEVSMPDEYWVEAELAEVREVRGHCYMELVQKDVSTHTPVARASAKCWRSRWMLVGPYFERMTGRRLCAGLKVLLRVHADFHEAYGFSWIVTDIDPRFTMGDLARRRQEIIRILRQEGVLELQRELSLPMFTQRIAVISSENAAGYGDFCNQLMHNDYGLRFAVQLFSAVMQGEQVERSVIAALDRINADVDAFDAVVIIRGGGATSELSGFDTLELAENVANFPLPIITGIGHERDESVLDLVAHTSVKTPTAAATLLIDHLAAVLQRIGEAQDAVTRTVRQRLEIERIRIDRLASTIPMLFSVVKTQQEARIDNLFTALTHAVGQHIAAANHHLDTLSNVLPSAAERLITVEQHRMALLAQRVEAVDPVQLLNRGYSITLHNGRSVRDARSLRSGDEIETRVAHGTIWSVVK
>NZ_CP013195.1|WP_025065867.1|1040915_1042301_+|MATE-family-efflux-transporter
MDHKQATLELGTQPVGKLLMQYSVPAIIAMTAASLYNMVDSIFIGQGVGAMAISGLAITFPFMNLTSAFGAAIGIGASTCLSVKLGQKDYSTAQRILGNTFTLNLIIGLSLTLVCLLFLNPILRFFGASDQTIVYARDYMEVILAGNAISHMYFGLNAVLRAASKPRQAMFATIFTVAFNAVLDPLFIFGLELGIRGAAYATILSQAVALTWQLKLFSNKAELIHFKRGTFRLRRDLVRNIIGVGMSPFAMNVCACVVVIFINTGLVQYGGDLAVGAYGIANKVAFIFVMITMGVNQGMQPIAGYNYGSQQLDRLLRVLKLSVIAGTVVMTSGFLLATLAPYPCARLFTSDKTLIAMSIRGIRIVMLSFPIVGCQMVITNFFQSIGKARISMFLSLSRQLLFLIPMLIILPKHFGVDGVWISMPMADTVSAGVAIAMMTVYMRKFNRQHKQLTDERQEFNH
>NZ_CP013195.1|WP_021583210.1|1042275_1042902_+|cytidylate-kinase-like-family-protein
MNDKNLIINVGRQLGSGGRSIARLLADEFACKFYDRELLNLAAKESGFSEKFFEQNDENKGFLKSRFHIHIPYMPDANFYNDKFSQESLFQFQSDAIRKAADAGSCVFVGRCADYVLRDYRNVVNIFITADTQKRIERIAERHACDAKTAERLVNSIESGRSSYYNYYTGKRWGFSDSYDLCINSSLLGIKETARYLADFIRKRMQRQ

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Crispr_ID: NZ_CP013195_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013195_6

1088247-1088352

Orphan

Consensus_repeat	Method
GCATTTAACTTTCCTTTCGGTTTG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP013195_6

>merge|NZ_CP013195|6|1088247-1088352|CRISPRCasFinder
GCATTTAACTTTCCTTTCGGTTTGGCGTTTGCTCATGTTGAGCATTTAACTTTCCTTTTGGTTTGACATTTGCAACACCGGAGCATTTAACTTTCCTTTTGGTTTG

>NZ_CP013195|6|6|1088247-1088352|CRISPRCasFinder
GCATTTAACTTTCCTTTCGGTTTG	GCGTTTGCTCATGTTGA
GCATTTAACTTTCCTTTTGGTTTG	ACATTTGCAACACCGGA
GCATTTAACTTTCCTTTTGGTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013195.1\|WP_025066237.1\|1072426_1073977_+\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NZ_CP013195.1\|WP_025066622.1\|1086645_1087335_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065989.1\|1095750_1098246_+\|SLBB-domain-containing-protein	unknown	unknown	gnl\|CDD\|132073
NZ_CP013195.1\|WP_060544248.1\|1100249_1101083_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133017
NZ_CP013195.1\|WP_025065986.1\|1092553_1093198_+\|DUF4468-domain-containing-protein	unknown	unknown	gnl\|CDD\|213397
NZ_CP013195.1\|WP_060544243.1\|1074109_1075780_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341240
NZ_CP013195.1\|WP_025066619.1\|1081125_1082430_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP013195.1\|WP_025065988.1\|1093408_1095736_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379481
NZ_CP013195.1\|WP_060544244.1\|1078724_1080848_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP013195.1\|WP_156409614.1\|1089068_1089410_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066236.1\|1075793_1077458_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341240
NZ_CP013195.1\|WP_025065987.1\|1093208_1093409_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_060544245.1\|1082429_1083215_-\|NAD(+)-diphosphatase	unknown	unknown	gnl\|CDD\|234699
NZ_CP013195.1\|WP_025065985.1\|1090444_1092472_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP013195.1\|WP_025065990.1\|1098786_1099542_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133055
NZ_CP013195.1\|WP_060544246.1\|1083215_1084979_-\|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|277355
NZ_CP013195.1\|WP_025065991.1\|1099538_1100246_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133039
NZ_CP013195.1\|WP_025066235.1\|1077588_1078599_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP013195.1\|WP_025065984.1\|1089740_1090136_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066620.1\|1085086_1085773_+\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|274090

Protein	Function_ID	Function_description	E-value
NZ_CP013195.1\|WP_025066237.1\|1072426_1073977_+\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	3.38506e-52
NZ_CP013195.1\|WP_025066619.1\|1081125_1082430_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	3.17346e-133
NZ_CP013195.1\|WP_025065989.1\|1095750_1098246_+\|SLBB-domain-containing-protein	gnl\|CDD\|132073	TIGR03028, EpsE, polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.	1.79353e-21
NZ_CP013195.1\|WP_060544248.1\|1100249_1101083_-\|glycosyltransferase	gnl\|CDD\|133017	cd02526, GT2_RfbF_like, RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.	6.06001e-43
NZ_CP013195.1\|WP_025065986.1\|1092553_1093198_+\|DUF4468-domain-containing-protein	gnl\|CDD\|213397	cd12190, Bacova_04320_like, Uncharacterized proteins similar to Bacteroides ovatus 4320. This model characterized a family of proteins conserved in Bacteroidetes, similar to B. ovatus ATCC 8483 reading frame 04320. Structurally, the protein resembles members of the SRPBCC domain superfamily (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC).	6.16826e-53
NZ_CP013195.1\|WP_060544243.1\|1074109_1075780_-\|AMP-binding-protein	gnl\|CDD\|341240	cd05914, LC_FACL_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL). The members of this family are bacterial long-chain fatty acid CoA synthetase, most of which are as yet uncharacterized. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions.	3.89672e-155
NZ_CP013195.1\|WP_025065988.1\|1093408_1095736_+\|hypothetical-protein	gnl\|CDD\|379481	pfam14121, Porin_10, Putative porin. This family of membrane bet-barrel proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 655 and 722 amino acids in length. SRI_1264 is identified by Gene3D as a membrane bound beta-barrel. These sequences are putative porins.	2.36086e-164
NZ_CP013195.1\|WP_060544244.1\|1078724_1080848_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	6.90307e-57
NZ_CP013195.1\|WP_025066236.1\|1075793_1077458_-\|AMP-binding-protein	gnl\|CDD\|341240	cd05914, LC_FACL_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL). The members of this family are bacterial long-chain fatty acid CoA synthetase, most of which are as yet uncharacterized. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions.	3.47495e-146
NZ_CP013195.1\|WP_060544245.1\|1082429_1083215_-\|NAD(+)-diphosphatase	gnl\|CDD\|234699	PRK00241, nudC, NAD(+) diphosphatase.	3.54211e-76
NZ_CP013195.1\|WP_025065985.1\|1090444_1092472_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP013195.1\|WP_025065990.1\|1098786_1099542_-\|glycosyltransferase	gnl\|CDD\|133055	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	4.30246e-75
NZ_CP013195.1\|WP_060544246.1\|1083215_1084979_-\|bifunctional-metallophosphatase/5'-nucleotidase	gnl\|CDD\|277355	cd07410, MPP_CpdB_N, Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	3.93467e-81
NZ_CP013195.1\|WP_025065991.1\|1099538_1100246_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133039	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	6.45005e-73
NZ_CP013195.1\|WP_025066235.1\|1077588_1078599_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NZ_CP013195.1\|WP_025066620.1\|1085086_1085773_+\|J-domain-containing-protein	gnl\|CDD\|274090	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.	8.95666e-35

>NZ_CP013195.1|WP_025066622.1|1086645_1087335_+|hypothetical-protein
MNYSLPFFRLSAVLTFVFNAFIMKAEAPDTVLLPHVIQYCISHEDLINNRWSELQVDEPAFVKDANGEKKATTELYFLLQKKSVRKEIGKKALAVKCDSTFMLNLRSLRIGLVGAMGRDFARAYPLKDGRYVITYYDVSKMGGASSMGVMGGLIGATMMLAATENIRSNYVCYLFTPGVNKVVRIKNDVLKELLVGHDDLFDEYSKIDRYERNFEGIILPLLKRANLFR
>NZ_CP013195.1|WP_025066620.1|1085086_1085773_+|J-domain-containing-protein
MAFIDYYKILGVARDIPQKDVRKAYLKRAKLFHPDLHPDDPKAKAKFQALTEAFDVINDPEKRRKYDQYGEQWRNAEAYERAGGGTGGTYHWSGGGGESPFEGFDFSGFSSGGGGFSDFFRDLFGASGRGGTSQRSSRMRSGEMNATVNIDLYTALLGGAVVIQLSNGTKIKLKVKENTQNGAKVRVRGKGYDRGDGTFGDLIITYHVQLPTSLNERQKTLLREMRES
>NZ_CP013195.1|WP_060544246.1|1083215_1084979_-|bifunctional-metallophosphatase/5'-nucleotidase
MRNLILASILTLGLLPSSTTMAKIKTVRLRVIQTSDVHGSFFPYDFIGRKERGGSLARVSTYVNSLRKSYGRNLILLDNGDILQGQPTCYYCNFVKPEMPNVAASVINYMRYDAETMGNHDVETGHQVYDKWIREVKCPMLGANIIDTKTGRPYVHPYTILDRDGVKVAVIGMLTPAIPNWLNESLWSGLRFDEMVKTARYWVDYLQKNEHPDVIIGLFHSGKDGGIKTANYAEDASLEVAKQVPGFDLILYGHDHTRHRDVIKNIRGKKVLCLDPSCNAYLVSDAMITITKDGKKVVRKDVTGDLVDISKQAIDADYMAHFKPEIDSVNAFVNRKIGHFKRSIYTRDCYFGSAPFTDFIHDLQLRITGADISFNAPLSFDTRIQAGDVHVSDMFNLYKYENQIYVLRMTGKEIRKHLEMSYDLWCNTMTSPDDHIMLMNDHAKEDQQRFGFKNLAFNFDSAAGIDYEVDVTKPNGHKVRILRMSNGQPFDENRWYKVAMNSYRGNGGGELLTKGAGIPHDELKRRIIFESERDLRYYLMKEIEKVGVMDPKAHGNWRFVPDDWAKPAIERDKNLIFGTPIDSKDSK
>NZ_CP013195.1|WP_060544245.1|1082429_1083215_-|NAD(+)-diphosphatase
MKRYWFVFCQSDIVLEKLSDGTYTIPFSENAPAFVKSSATVHTITPFEDGSEVRAVSLDIPVIDDPRYEMCGLRASYYKLNINLYNKAGKCQEILYWDQNTRFCGVCGGPMKLHTDISKRCTVCGKEVWPQLSTAVIVLISRGDEILLVHARNFRGTFYGLVAGFVETGETLEEAVRREVKEEIGLAIKHLRYFGSQPWPYPSGLMVGFFAEYDSGTIHLQQSELAAGGWYHKDSLPQIPEKLSIARKLIDHWLDHFNTEK
>NZ_CP013195.1|WP_025066619.1|1081125_1082430_-|NCS2-family-permease
MKNLLEKALGFDAKSMKLRTELIAGATTFLTMSYILAVNPTILSSTGMDKGALFTATALASAIATLLLAFMAKLPFAQAPSMGLNAFFAYTLCLAMGYTWQQALAIMLAEGVIFILITFFNIRELILESIPKNMRFSISAGIGMFIAFIGLKNADIIVAKEATFVGLGKFTPTCILGIVAILMSGILMAKNVKGSLFYGIIVATLVGIPLGVTQIPNGWIPISAPQSLSPIFCMFDFKDFFTLQTLLVIFSLLIVNVFDTIGTIVGLAYKTGIVRADGSIPHVKEAMMSDAIGTTCGAMLGSSTITTYVESASGIAEGGRSGVTSFFVGLLFIIALFLSPIFLLIPSAATSGALVLVGVLMIDSVKKIDLSDVSEAFPAFITMITMVLCYSIADGICLGILSYVIVKLCTLQFKQLNPTLLVLSVLFVINFIFG
>NZ_CP013195.1|WP_060544244.1|1078724_1080848_+|cation:proton-antiporter
MPDISHYLPITSPTMIFLVVLLIVLSAPIIMGKLRIPHIIGMVIAGVIVGQYGLNILIRDNSFELFGRVGLYYIMFLAALEMDNEGLKKNKYKLLTFGLLTFVIPFGLTYFTCTMLLGYGSMRSLLLSCIMASNTLIAYPIVGRFGLQRKPSVSLSVGASMLALFLALVVLAMLTAITEKYGGIGFWIWFGLKFALFCTALILLIPRLTRWFLRRYSDAVMQFIFIMAMLFMSAALAELIELEGILGAFLSGLILNRYIPHISPLMNRIEFIGNALFIPYFLIGVGMLINVRLLFAGGGIIWVLICLTVAGTLGKALAAYLSSFSFRLPLSSGHMMFGLTSAHAAGSIAMIMVGMRLQTADGQPMIDNSVLNAVILMILFTCVVSTIVTERAARRITLRDKELPTDNDQSTDDENILIPVKYPEYATNLISLALMMRNPKLGRGLIGLNVVYDDAQMRSNQEKGRRLLEQLTRYASAADVMMQTQVRIAANIANGIKHAFKEYQASEIIIGMHMHKDVSAGFWGQFHQSLFNGLSRQIMMVRLRQPLNTIRRIQVAVPSRAQFEPGFYRWLERLSRVACNLECRIQFHGRTDTLALINEYVRNRHPSLRVDYTTMDHWNELPRLAGTIAEDHLFVVVTARKGTVSYKTALERLPEELTRHFSGTNLIIIFPDQFGEEMDKMTFAEPQHQEERSAYEAVGEWIRRQVH
>NZ_CP013195.1|WP_025066235.1|1077588_1078599_-|aspartate-semialdehyde-dehydrogenase
MKIAIIGASGAVGQEFLRILAERNFPIDELVLFGSERSAGHTYTFRGKDYEVKLLQHNDDFKDVDIAFVSAGGGTSKEFADTITKHGAVMIDNSSAFRMDKDVPLVVPECNAEDALDRPRGIIANPNCTTIMMVVVLKPLENLSHIKRIHVASYQSASGAGAAAMAELEQQYKEIVEGKMVTVNKFPHQLAYNVIPQIDAFTDTGYTKEEMKMFNETQKILHSDVKCSAMCVRVSSLRSHSESVWIETERPISVEEARRAIASAPGCTLKDDPDHLIYPMPLETAGKDDVFVGRVRKDLADDHGLTFWLSGDQIRKGAALNAVQIAEYLIKVGDVK
>NZ_CP013195.1|WP_025066236.1|1075793_1077458_-|AMP-binding-protein
MESIPSFNSFVEQSIINNWDLDALTDYKGATLQYHDVARKIEKLHILFESSGVEKGDKIAICGRNSAHWAVTFLATIAYGAVVVPIQHEFTPDQIYNIVNHSESRLLFVGDVVATQIDALQMPTLEGIIYLPDFSLLESRSEKLIYAREHLNEMFGRKYPKFFRKEHVHYHQDTAEELAIINYTSGTTGFSKGVMLPYRALWSNMDFINEAIGKHLTRGSKVLSMLPMAHMYGQLVEFIFEFCFGNHIYFLTRLPSPSLIAEAIAEVKPAVVISVPLIVEKIIRKKVFPIVQNNKVRLLMNMPVINKKVKERICETVKEAFGGNAYEVVVGGASLNKEIEDFLVNIGFPITVGYGTTETAPMITFSDWTDFVPGSCGTVVTRMEVKVASPDPQNIPGEIITRGLNVMLGYYKNEEATRKVIDEDGWFHTGDLGTMSEDGHIFINGRIKNMLLGSNGQNVYPEEIENQLNSMTMVNESLVIQDGERIIGLVYPDYEEARVLDLTDEDLTGIMEQNRQELNEQLPPYCKLATIHLRTEEFEKTPKKSIKRYLYKNV
>NZ_CP013195.1|WP_060544243.1|1074109_1075780_-|AMP-binding-protein
MEQTPSFNKLIEESIINNWDRDALSDYKGITLQYHDVARKIEKLHILFENSGIQRGDKIALCGRNSANWAVAFLATLTYGAIAVPILHEFTAEQVHNIVNHSEAKLLFVGDVVATTIDGTKMPGLEGIIYIPDYSLVISRTDQLTFAREHLNEMFGKKYPKYFRKEHIHYYIDHSSDQLAMINYTSGTTGFSKGVMIPYRALWSNFDFAIHVLGDKIHPGDNIISILPMAHMYGMAFEFIFEFLSGCHIFYLTRIPSPAIIAQAFADVRPAVIIAVPLIIEKIIRKKVFPKIQNNGMRLLLNMPVISKKVNQKICEQVSEAFGGHFYEVIIGGAAFNREVETFLHKIGFPFTVGYGATECAPIIAYADYQTFIPGSCGRPVIHMEVKIDSPDPANVPGEILARGLNVMLGYYKDEEATRTTIDPEGWYHTGDLGTMDDQGNIFIKGRSKNMLLGASGQNIYPEEIEDKLNSMAMVTESVVIQSGEKLIGLVYPDFEEAKTMGFSNEDLTNIMEQNRQALNAVLPAYSKLSSIHLYDEEFEKTPKKSIKRYLYQDNN
>NZ_CP013195.1|WP_025066237.1|1072426_1073977_+|ComEC/Rec2-family-competence-protein
MDTNGKIQLFPLLRIAIALVLGVVAGDGVGDRLPVWIWLSMLGAMLVPLCFTRFKPVTETCLIYAAVFVLGAWITTLKEAQLRIVLPDDEVEYQAVVISRPVVRGKVIRFDMLITHCEGSPCRRPLRVKATLLRDTVAGRYRQLDVGSGLTARSVLVHPVGYAADSHFDYVRWLQVHGFVAETFIYYTQWQQEPADLSSLSEWEQTRLSALRLRQRLADRLRHCGIEGEALSVVAAMTLGDKSGLTREVKEAYSVSGASHVLALSGLHLGIIYAFLTLLFPHRRWRVASQGVVLSSIWSYVILVGMPSSVVRAAVMLSIYAVASLLGRARMSVNALSLAAIVMLVANPLTLWDIGFQLSFAAVMAIFILFQPLYGLLLERLWISSRIVKWVWSMIVVSVAAQVGTAPLVMYYFGRYSCYFLLTNFLVIPAAMLILYSVLAMFALSPFAVVERLLATFVLTVARWLNGGVSHIAAWPGASIEGIRISRLQLVLIYLLIGCVYAAVHYVRKLYRMSRA
>NZ_CP013195.1|WP_156409614.1|1089068_1089410_-|hypothetical-protein
MDQKESPTGPRTAAWTKKNLRRGRAPAAWTKKNLRRGRAPAAWTKKNLRRGHAPAAWTKKNLRRGHAPAAWTKKNLRRAQTIHFHHKITSNMKPIKQINETLSSKFSLGLQSW
>NZ_CP013195.1|WP_025065984.1|1089740_1090136_-|hypothetical-protein
MKRLVLVTLWMALCAIHISAQKADDFLSRYKRFLNGVESLKSVTPHDYQRIDSVYEMLTNEYHTTYKAKMTNNQLSTYTAYRTRYKKKMAFLESKKLTEAVDTTGNVITKAVKKSSAKVSGFLKGLFGKKK
>NZ_CP013195.1|WP_025065985.1|1090444_1092472_+|excinuclease-ABC-subunit-UvrB
MRFKLTSKYSPTGDQPEAIQQLTAGVNNGDRAQVLLGVTGSGKTFTVANVINNVNKPTLILSHNKTLAAQLYEEMKAFFPENAVEYYVSYYDYYQPEAYSPTTDVYVEKDLSINEDIDKLRLSAVSALLSGRKDVIVISSVSCIYGMGGPIAMQNSIIFIKKGQRLNRNDFLRKLVSALYVRNDMELQRGNFRVKGDTVDVAMAYSDNVLRVTWWDDEIDSIEEVDRATFYRLSSFEEYRIYPANLFITTKEQTEQAIRLIQDDLVKRVAYFEDLNEETKAQRIKERVEYDMEMIKELGYCSGIENYSRYFENRQPGQRPYCLLDFFPKDYLLIVDESHVSVPQINAMFSGDRARKQNLVEYGFRLPAAFDNRPLRFEEFHELIHQAIYVSATPADYELQEAEGVVVEQLIRPTGLLDPKIEVRSCTNQIDDLMSEIVKRCQKKERVLVTTLTKRMAEEMTEYLLEHDVRASYIHSDVGTLDRVKIMTDLRAGVFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAARNVNGLVIMYADKITESMKKTIDETERRRSIQLKYNEEHHITPQQIVKEINGALTIGRKIGSNTAAYPDSTYLENNTAAFAADPIIQKMTRQQLEKSIADTTDLMKQAAQKMEFLQAAQYRDEIIRLQAQLDLK
>NZ_CP013195.1|WP_025065986.1|1092553_1093198_+|DUF4468-domain-containing-protein
MKKLIAILLTILPLTATAQDVWEKPQDSKQQVKQTVEKAKKDEIKQEDAKYLSGAVPEVDGKVVFTLDLSLPGKSAQDIYDQVYAQLDKMSKEDNQFKESGIVLINKRDHIIAAHYKEWLIFTNNFISLDRTELSYTIIAKCMDGQLNLTLSRISYSYEKGRSTGFNTTAEKWIVDAVALNKRKTKLTKGSAKFRRKTIDRKDEIFSAITNALK
>NZ_CP013195.1|WP_025065987.1|1093208_1093409_+|hypothetical-protein
MTRDHLQLSGNQDKFLKIRNILNIIFMVGAIAGVLIYFYADRPTGTIIILVAMVFKMIESILRFFH
>NZ_CP013195.1|WP_025065988.1|1093408_1095736_+|hypothetical-protein
MKKTLTLVLFSLMVFHTAIKAQSDFNQIDNGGQITTSDQRRKTTDSLGSDKEIPVGIKVWTVDTRFGDRKPAQVDTLSHMFMNTIFTSGLRGEYNTTGNLGSPRINRIFIDRRESGHFIFTQPYSYFITPTDAFLFTNTLSPFTNISYNNCGDRTNGEDHFTAKFGVNAGQRVGAGFKFDYLYGRGYYQSQSTSHFNYSMYGYYLGDRYQAQILLSTNHQKVAENGGITNDNYITHPESFNEDFQTSEIPTVLSQNWNRNDNQHIFFTQRYNLGFNRKVKMTEEEIKAKKFAIEAQKDQEKRKNREQAEKEAKRKGEVFDSKNFAEKKTFTGRPTGAAIAGTEPTDSIDRKGNRISVKGKAAADSILTAQKKQQEDTLWLKDEYVPVTSFIHTLNLDNYRRIYTAYATPSNFYLNTYRNVSRFSGDSLYDKTNHYRIQNTFAISLLEGFNKWAKAGLKAFVTSDFRHFTLPDTIQGTAAYNEHNLSIGGQLSKTEGRTLHYNLLGETWLTGEDAGQLKIEATVDVNFPLFGDTVTLAASGFLHRLNPTFYYRHYHARHYWWDNGDLSKIIHSRVEGLFSYRKTRTTLRVAVDGIKNYTYFSGAYTITSTFGRTGNVVTPLQSGDMISLITASLGQDFTFGPLNWENLITYQKSTKSDILPVPQINVYTNLYLRFKIARVLHCDFGADMRFFTKYYAPDYSPALGQFVTQTGDNKTEVGSYPIVDVYANFHLKRTRFFVMMSHVNAGMGSQNYFLTPHYPLNDRVFRFGLSWNFFN
>NZ_CP013195.1|WP_025065989.1|1095750_1098246_+|SLBB-domain-containing-protein
MKKLLVYILLSVLCQLTVSAQSTMTDDQIMNFVAREYKAGTSQAQIVTKLIQRGVDIDRIRNIKRKYERQAKQQGLGVVAEKSVSDRLRKNNGEKKDTQGQYSNYRLRMGRGVGSVTEDERLLMQKELTALMPQDTMTMPIQMTEKNYDRNRKVFGRDIFNRKDLSFEPNMNIATPRNYRLGPGDAVVVDIYGASQKTIEATVSPDGDIIIEGFGPIQVSGLTVNEANARLRSTLGSRYSSSKVRLTVGQTKTIMVNVMGEVRTPGTYTLSAFATVFHALYMAGGTNDIGTLRNIKVFRNNRLITVVDIYDYMLNGKLTGNIRLADNDVIVVGPYDCLVDITGKVKRPMFYEMKKSESIATLLKYAGGFTGDAYRRAVRVIRKTGREYSIYNVGEFDMTAFRVTDGDSVSVDSIISRFENRVEVRGAVFRPGIYQVGGDINSVRTLIQQAEGVKEDAFTAHAVMHRMKPDRTLKIIPVDIEGIMSGKAPDIPLQKNDVLFIPTKQEMMQQQTITIHGEVQYPGIYRYADNETIEDFILQAGGLRDAASTVKVDIARRVKNPKALTTDSIIAQTYTLALKDGFVIDGKPGFTLMPFDEVYVRKSPSYSTQKNISVEGQVTFAGTYTLARKNERLSDAIRKAGGITNRAYIAGARLERRITPEERLRMQTVLRMAQAQRGEKDSLAMNKLELGDTYFVGIELNKALSHPGGDADFVLREGDRIIVPEYNGTVKISGDVMYPNAVAYKKGKRLSYYINQAGGWGNRAKKSHTYIIYMNGTVAKVSHNARVMPGCEIVVPSKPVNSGLKLTEWLSIGTTAATIATMIATIANLVK
>NZ_CP013195.1|WP_025065990.1|1098786_1099542_-|glycosyltransferase
MKVSIITVAYNSAKTLSDTIRSVLGQTYSDIEYWIIDGNSNDGTQNIIRQYEKHFNGRMQWISEPDCGIYDAMNKGINLCSGDIIGFLNADDFFTSDHAVAHIAKHFTDDTDAIYGDVHFVRDRQLDKCVRYYSGAIFRPWMVKFGFIPPHPSFYVRKKIYEKYGAYRADYQISADFELIARVCYKNKIRISYTPLDVVTMRLGGVSTNGYRNHLLGLIETLRACKNLGIHTNLLFVSMKYIIKLYGLIRT
>NZ_CP013195.1|WP_025065991.1|1099538_1100246_-|glycosyltransferase-family-2-protein
MISVCIATYNGERFLSEQLMSILPQLSPKDEIIISDDGSQDETIRLIESIKSPQIHLHINDGKRGYTPNFENALRHAKGEYIFLADQDDIWMPNKVSVCMRLLQSYSLVISDAVIINEQGIRMGESFFKLRKTRKGLLHTLVRFSFLGCCIAFNRKILHRAIPFPTKHLLCTHDNWITLVGMTYYKTIVIDDKLVCYRRHSSNTSAGGMQNSTSIAFKIKYRLYLLIKLISRRRL
>NZ_CP013195.1|WP_060544248.1|1100249_1101083_-|glycosyltransferase
MKQTLPDRNNTAIVVVTYNPGEDFATNMKRYARIAALVIIVDNDSDNKSHVREIAEANNAVFIGQNQNTGIAAALNMGIKKGLTENKEWILTLDDDSLPNEKILPIYANFISRYDHVGIIGTTFSRKRFKTNHATTCTDSLTVITSGSLHHRNIFHKIGYYEEKLFIDCVDFDFTIRVKIDGEFSVKRIAPPLIIHHIGDPVKKRGLSSWNHSALRRYYWARNTVYLNKKYLFYVPVWITKKDFFFLKDLLLIAIVEDDRLQKFKAIAKGIRDGLTL

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Crispr_ID: NZ_CP013195_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013195_7

1351684-1351814

Orphan

Consensus_repeat	Method
TCACTTTTTGAGCAAAAACAGTGCGGAGCGTGACGCTCCAGCAACTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013195_7

>merge|NZ_CP013195|7|1351684-1351814|CRISPRCasFinder
TCACTTTTTGAGCAAAAACAGTGCGGAGCGTGACGCTCCAGCAACTTTTTGCATGATTTCACGCCAGCGCGTCACGCTCTACTCACTTTTTGAGCAAAAATAGTGCGGAGCGTGACGCTCCAGCAACTTTT

>NZ_CP013195|7|7|1351684-1351814|CRISPRCasFinder
TCACTTTTTGAGCAAAAACAGTGCGGAGCGTGACGCTCCAGCAACTTTT	TGCATGATTTCACGCCAGCGCGTCACGCTCTAC
TCACTTTTTGAGCAAAAATAGTGCGGAGCGTGACGCTCCAGCAACTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013195.1\|WP_025065639.1\|1361749_1362043_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259854
NZ_CP013195.1\|WP_025065640.1\|1362020_1363148_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|365952
NZ_CP013195.1\|WP_060544282.1\|1345842_1347861_+\|alpha-amylase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|215246
NZ_CP013195.1\|WP_025065634.1\|1352931_1355427_+\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP013195.1\|WP_148299577.1\|1344293_1345379_+\|phosphatidylinositol-4-phosphate-5-kinase	unknown	unknown	gnl\|CDD\|215619
NZ_CP013195.1\|WP_036888554.1\|1358440_1359373_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|182223
NZ_CP013195.1\|WP_025065629.1\|1345393_1345840_+\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|377217
NZ_CP013195.1\|WP_025065627.1\|1340630_1342271_+\|diphosphate--fructose-6-phosphate-1-phosphotransferase	unknown	unknown	gnl\|CDD\|235930
NZ_CP013195.1\|WP_025065631.1\|1349484_1349706_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065638.1\|1360457_1361753_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|223694
NZ_CP013195.1\|WP_060544285.1\|1357541_1358468_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP013195.1\|WP_156409619.1\|1356012_1357497_-\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240530
NZ_CP013195.1\|WP_060544281.1\|1343417_1344161_-\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NZ_CP013195.1\|WP_060544280.1\|1342333_1343224_+\|glycosyl-hydrolase-family-25	unknown	unknown	gnl\|CDD\|119384
NZ_CP013195.1\|WP_060544283.1\|1349734_1351297_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065635.1\|1355467_1355899_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065633.1\|1352007_1352883_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NZ_CP013195.1\|WP_025065637.1\|1359504_1360461_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP013195.1\|WP_025065626.1\|1340147_1340420_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065630.1\|1347863_1349021_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013195.1\|WP_025065640.1\|1362020_1363148_+\|HU-family-DNA-binding-protein	gnl\|CDD\|365952	pfam00216, Bac_DNA_binding, Bacterial DNA-binding protein.	1.33337e-18
NZ_CP013195.1\|WP_060544282.1\|1345842_1347861_+\|alpha-amylase-C-terminal-domain-containing-protein	gnl\|CDD\|215246	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme.	0
NZ_CP013195.1\|WP_025065634.1\|1352931_1355427_+\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	3.04761e-48
NZ_CP013195.1\|WP_148299577.1\|1344293_1345379_+\|phosphatidylinositol-4-phosphate-5-kinase	gnl\|CDD\|215619	PLN03185, PLN03185, phosphatidylinositol phosphate kinase; Provisional.	2.52272e-39
NZ_CP013195.1\|WP_025065633.1\|1352007_1352883_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	2.66463e-178
NZ_CP013195.1\|WP_025065627.1\|1340630_1342271_+\|diphosphate--fructose-6-phosphate-1-phosphotransferase	gnl\|CDD\|235930	PRK07085, PRK07085, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional.	0
NZ_CP013195.1\|WP_025065638.1\|1360457_1361753_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	7.29571e-140
NZ_CP013195.1\|WP_060544285.1\|1357541_1358468_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	7.30311e-35
NZ_CP013195.1\|WP_036888554.1\|1358440_1359373_+\|glycosyltransferase	gnl\|CDD\|182223	PRK10073, PRK10073, putative glycosyl transferase; Provisional.	1.4177e-23
NZ_CP013195.1\|WP_025065629.1\|1345393_1345840_+\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|377217	pfam04074, DUF386, Domain of unknown function (DUF386). This family consists of conserved hypothetical proteins, typically about 150 amino acids in length, with no known function.	1.9857e-43
NZ_CP013195.1\|WP_060544280.1\|1342333_1343224_+\|glycosyl-hydrolase-family-25	gnl\|CDD\|119384	cd06524, GH25_YegX-like, YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.	2.49546e-66
NZ_CP013195.1\|WP_060544281.1\|1343417_1344161_-\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	7.95257e-131
NZ_CP013195.1\|WP_025065639.1\|1361749_1362043_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259854	cd13832, IHF, Integration host factor (IHF) and similar proteins. This subfamily includes integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms. This subfamily also includes the protein Hbb from tick-borne spirochete Borrelia burgdorferi, responsible for causing Lyme disease in humans. Hbb, a homodimer, shows DNA sequence preferences that are related, yet distinct from those of IHF.	3.26872e-22
NZ_CP013195.1\|WP_156409619.1\|1356012_1357497_-\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240530	cd13125, MATE_like_10, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides, such as O-antigen. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	7.72474e-60
NZ_CP013195.1\|WP_025065637.1\|1359504_1360461_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	2.03493e-171

>NZ_CP013195.1|WP_060544283.1|1349734_1351297_+|hypothetical-protein
MKDYMKTIKTWTLLVAGLLLTASCANDDVTQKDTETDNGTEKNLTTFVTGTEPTSRTSMDYTGGKFYWEAGDHIYVQDDDGGWRISSNTPTAKTAYFKFMVPGKFKNHTSYKVYYPGKNGNKDQVTIPATQTQTAPNTTAHFGVSGDCGIADATGTKGRGPFNFTLDHQAAILVFQPYTSNTILKNCYLTKVEVSSDNDIAATYTLDPTNGLTGTGTGKQIVLTTKSSTYGSANYNGFPLNTTSANVTTNGAYMLIKPGTHILKIRYWVKDVATNVEGTITKNLSSFNYAKNTYYDMAANLDVKDYDGDHYYMWDAKKQYWDGWEWTKNLPDGQPTLNTNSSNNYPQSNSDPRYYNNSYSGFGVRNDAQTTLFKTLPNVNEMVWYAQKGSPRKDGDELWTTMGHLHKGGIWFKKKASISGFDTNLAPDGYDWRVNGNGSGWSVSQTLPSASEANQFFYLPALGRYYFGQLDNVGDNGYFWSSSAYPFSQSNAFGLSFFGGNVYVDHYASRTYGYRAQTFK
>NZ_CP013195.1|WP_025065631.1|1349484_1349706_+|hypothetical-protein
MNRKQLERWAYAKPAVETIRLEVHNELMDTSFPSQHNPGQHGTGPSSAKQGWFDEEDEDESLATPAGEGSLWD
>NZ_CP013195.1|WP_025065630.1|1347863_1349021_+|hypothetical-protein
MTDPTIKNSAIIIRVMCAIFFLAFSFAYLYYYQADVLAVAQHILSGGRTCYNQTIGAVLITFVLFLLHWGMATLVRLPRLLYAQTYFFPLLLLLFLTELRPDYNNRFAFGIWFWLLPLLLILHGGILWIFHQMKLSQDGYTSKGFFSRTLWVNLLQMIIMSFLVGQIGAGNDVFHYRAKAERALMKNDYTTAVNIGSNALSTDTSLTMIRIYSLSRKGLLAERLFEYPLAGGSSALLPHGNHARLLMYPEHKIYTYLGLRIQQPMKPMDYLRFLERHHLLKRPAVDYLLCGYLLDRDLDSFVHSLPRYYDVKGSLPKHYREALTLYTHLHSAPSIIYHNNVMDADFQDYQDMERANRDKVIRRTKLRDIYGNTYWYYYQYGQTDR
>NZ_CP013195.1|WP_060544282.1|1345842_1347861_+|alpha-amylase-C-terminal-domain-containing-protein
MATKQKHIGLVMNDGYLEPFEDAIRGRHDHALWKLNQLTRNGKKTLSDFANGHEYYGLHKTARGWVFREWAPNATELYLVGDFNDWSETVKYRAKRIEGTGNWELKLSEKAMKHGDLYKMRVHWNGGEGERIPAWCRRVVQDEATKIFSAQVWNPEPYKWRKSRFKPDVSPLLIYECHIGMGQDAEKVGSYTEFKDNILPRIVKDGYNCIQIMAIQEHPYYGSFGYHVSSFFAASSRFGTPEELKALIDAAHQQGVAVIMDIVHSHAVKNEVEGLGNLAGDPNQYFYPGDRHEHPAWDSLCFDYGKDDVIHFLLSNCKYWLTEFHFDGFRFDGVTSMLYYSHGLGEAFCNYGDYFNGHQDDNAICYLTLANLLIHEVNKHSITIAEEVSGMPGLAAKFVDGGMGFDYRMAMNIPDFWIKTIKELPDEAWKPSSIFWEVKNRRADERTISYCESHDQALVGDKTIIFRLIDADMYWHFKTGDENDLVHRGIALHKMIRLVTAAAINGGYLNFMGNEFGHPEWIDFPREGNGWSYKYARRQWNLVDNLELDYHYLGEFDRAMLGVIKSEKDFNKTPVQEVWHNDGDQILAFMRGDLIFVFNFSPTHSYADYGFLVPIGAYDVVLNTDAKVFGGNGLADDAVTHLTNYDPLYSDVRKEWLKLYIPARSAVVLKKN
>NZ_CP013195.1|WP_025065629.1|1345393_1345840_+|YhcH/YjgK/YiaL-family-protein
MIIDTLDHLEKYFSLNPLFRDVIDFIHSNDVERMPLGKHLIKGDDLFVNIAKFKGKAKAEAVLESHRRMIDIAICFNADETFGYTPAIALPEAEYHSEDDFSIYPGIPAQTYLSARPGMFTIFFPNEGHAPCISQESDLHKAIFKIKA
>NZ_CP013195.1|WP_148299577.1|1344293_1345379_+|phosphatidylinositol-4-phosphate-5-kinase
MLLFPTVVHAQKITLGSCTTKDGGQYKGEMMSGKPEGKGKTLYKNGDVYEGEYVKGRRQGYGIYTFSDGEKYEGQWFQDQQHGRGTFYFSNNNKYVGLWFRDYQQGHGIMYYYNGDRYEGNWHQDKRQGKGKYTYSNGAYYRGDWKDDQKSGRGFFDWGDGTTYDGMWANNQRSGKGTNRYADGDVYVGEWQSDIQNGKGIYKFQNGDVYEGDYVQGERTGEGIFKFANGDRYIGQFKDGDKDGQGTLVLKNGDVYKGQWKNDLQSGLGLWTLKKGDVIEGNFVRGAIDGETIIRYADGSKFKGQYKKGKRNGPAIEEDKNGNRFEGSYLNDRRDGKFVEKDRNGKITARGHYDSGRRFID
>NZ_CP013195.1|WP_060544281.1|1343417_1344161_-|3-deoxy-manno-octulosonate-cytidylyltransferase
MKFIGIIPARYASSRFPGKPLASLGGKIVIQRVYEQVAAILEHVCVATDDERILNSVTAFGGQAVMTSPHHKSGTDRIAEAVEKIGGDYDVIINIQGDEPFIQSSQIKTLCRCFDDPDTQIATLGKPFSTIDAVQNVNSPKIVLDNKGYAMYFSRAVIPFIRGVDQTGWLTQYPFLKHIGIYAYRASVLTEITQLPQSSLELAESLEQLRWLQNGYKIKVGLTEVETIGIDTPADLQRAEDFLRIHQ
>NZ_CP013195.1|WP_060544280.1|1342333_1343224_+|glycosyl-hydrolase-family-25
MSSARRTPRRTYRRHKRSARHRSSFLPAFLHRYPRWAWWVGGIGIVVIYIWAFYSFFVGPTGFRWRALYGDARYPEGYEIHGIDISHYQGTIDWDALQHAQIEGNPLRFIIVKSTEGAGQLDENFNDNFYQAREYGFIRGAYHFWSNKSSARSQAYYFLKQVHLEDGDLPPVLDIEHKPKGRSVEDFQRDVLTWLHIVEDKYHAKPIIYTYYKFKESYLSAPVFDDYPYWIAHYYVDKVEYKGKWKFWQHTDAGRLPGIKGYVDFNIYNGSYYDLRKLTIGSHEHKTPSLLDTEDN
>NZ_CP013195.1|WP_025065627.1|1340630_1342271_+|diphosphate--fructose-6-phosphate-1-phosphotransferase
MKKSLLQKERSSYQPKLPKGLQGAVKVKEGAPTQSVSDREEIQKLFPNTYGMPLVEFVPGNEANHEAMNVGVILSGGQAPGGHNVICGIFDEVKKLNPNNRLYGFLMGPGGLVEHNYIELTSEIIDDYRNTGGFDMIGSGRTKLEEEDQFEKGLEIIRKLDIQAIVIIGGDDSNTNACVLAEYYAAKKCGVQVIGCPKTIDGDLKNDQIETSFGFDTATKTYAELIGNIERDCNSARKYWHFIKLMGRSASHIALECALQCQPNVCIVSEEVQQKDMTLNQIVEQIAAAVADRASRGMNFGVVLIPEGLIEFIPSIGRLIGELNDLLAAHGADYKDLDKEAQRAYILAHLSKENAETFATLPEGVARQLSLDRDPHGNVQVSLIETERLLSDMVEAKLVAWKKDGKFDGKFAPLHHFFGYEGRCAAPSNFDADYCYALGVSAAQLIANGKTGYMAIVKNTTAPTDEWKAGGVPITMMMNMERRSGEMKPVIRKALVELDGAPFREFARLRDEWAKETCFIYPGPIQYWGPAAVCDRTTRTLELEQQ
>NZ_CP013195.1|WP_025065626.1|1340147_1340420_-|hypothetical-protein
MTNKRDLKRTINYICSDLFAECVGASLYNGTPEKDNVESLLTSIISTHTDFIRRISHPEPGMPQRQYYKNLIAEFNGQVSEIIDQIGNLN
>NZ_CP013195.1|WP_025065633.1|1352007_1352883_+|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIVLAGGSGTRLYPITKGISKQLIPIFDKPMIYYPISVLMLAGIRDILIISTPFDLPGFRKLLGSGEDLGVHFEYAEQPSPDGLAQAFIIGEQFIGNDSVCLILGDNIFYGAGFTQLLKCSVEEAEQRKKATVFGYYVNDPERYGVAEFDQAGNCISIEEKPTLPKSNYAVVGLYFYPNDVVEIAKQIKPSARGELEITTVNQEFLHRRQLMVQTLQRGFAWLDTGTHDSLSEASTFIEVIEKRQGLKVACLEEIALDNGWITKTQVRELAKPMLKNSYGQYLMSITEK
>NZ_CP013195.1|WP_025065634.1|1352931_1355427_+|polysaccharide-biosynthesis-tyrosine-autokinase
MEENTKQELERTKEGRFLFDFQTIYTILILNWKWFILSLIICLGLAAAYLRYTIPVFQVTAKLLIKDDGNSSSRYSRNSIQGMANLGIISNSTGLDNEMEILKSHSIATQSVRDLKLYVSYKGQGRIKDIPMYKNNPINVDIDPAHLERINRPIELNITRTRQGYHITGVYYQEGDYSTPIAIDKTLSQLPATIGLRSGILSFTKNSNISMPIGSSFDATITAPSSVAYRYTGGLNVSLPQKTSTITLLTLMDPIPQRAVDYLKQLVICYNSQANEDKNEVARRTEEFINGRLEKINAELGSTEGQLESYKRAHHITELKENAGQAIANQSQLDQQLSDANTQVSLLNSISSYMNQPDNKYQTLPSNVGLTDASATQLINRYNEIVLERKHLLRSASESSPAVQPLTSQLDDLSASIKRAMNQARRNMEIQRSNVASQYNKYSGQVSQTPEQERILTQIGRQQDVKSGLYLMLLQKREENSISLAATADKGRLIDDPQFSGKVSPQNTLILLIAIVLGLAIPMLILLVIRFFHYKIESHSDVANLTRLPILADVAVASETAKTKASIVVHENQNNQMEEIFRSMRTNLQFILKGDEKVIMFTSTTSGEGKTFNAANLSISFALLGKKVVLVGLDIRKPRLAELFEINDRQHGITSLLIRENPTMDDLRAQILPSGINNNLDLLMAGTIPPNPAELVARKSLDHIIDLLKENYDYIIIDTAPVGLVTDTLQIGRVADVTVYLCRADYTPKESFDLINELNEEKKLPKMCVVINGIDMSKKKHRYYYGYGNYGKYGRYGHYGKYGSYASYGYGSYGSKHNTYYGDKNDTSIKH
>NZ_CP013195.1|WP_025065635.1|1355467_1355899_+|hypothetical-protein
MIIAVDFDGTIVEHRYPQIGNEIPFATETLKMLIHDHHQLILWSVREGKLLEDAVNWCRERGVEFYAINRDYPEEEAEKNNHFSRKIKADIFIDDRNIGGLMDWGMMYQMINEHKTFQSILQESFHRIEQTENLPKRKSWWPF
>NZ_CP013195.1|WP_156409619.1|1356012_1357497_-|oligosaccharide-flippase-family-protein
MRRFYSVKQTENGYVHILKYTGVFGGAQGVCILLGVIRNKLVALLLGPQGMGLISLFNATITFLANATNLGLSMSAVREVSEAYASGDEERLDHSIRMLRVWGLLTAILGMLICLLLSPLLDRFTFTWGNHTIHFIFLAPAVGLMTLATCELAVLKGVRQLRRLALLSVYNVVGALLTTIPLYYVWGESAIVPSLCVMALLQLALTVNYSYRLYPLRLSGMRHLLTEGANMIRLGGAFVIAGMLGSGADFLIRSYLNRSGSLEAVGLYHAGMMMMTTYAGIVLTTMETDYFPRLSAVTTIRQELNRTVNRQIEVSLLVISPMLLGLLISLPVMLPLLYSGRFMPVLGMMQVLTAAFWIRAAKLPIAYLPLAKGEAKAYLLLESISYILLVPLVAVGYEQGGLTGAGIAVMLAELADFGIVAFYARHRYQFGLSRHVRKSVWVQLPCLIGTYAVVLWTEGWAYWICGALSTVISSLLSAYVLRHRAGSTTPYGGK
>NZ_CP013195.1|WP_060544285.1|1357541_1358468_+|glycosyltransferase-family-2-protein
MELSIIIPVYNAEQTLRRCVESVLEQSYTDDEIILVDDGSTDGSAVLCDELSRSDNRVRVIHQANGGLSSARNTGLDSIKGRFVTFVDADDYIGSDTLRAVMDAVKQHSSCDIFEYPMLVHYGGTRQHLLTFQDEEVHDMARYWFAHRGYLHSYVCNKVFRAELFRGIRFPVDQVFEDLITTARLLSLSRGIATIGQGLYYYVATPNSITASAGVRELEQLLTANLDAIRRYIPTTISSKDRAIHYLHLVNIRLDLYRRGKTDISLPRVHIPIGVFLDRSVSLSTKLKAFIIKTIGETALCKLYPRRK
>NZ_CP013195.1|WP_036888554.1|1358440_1359373_+|glycosyltransferase
MQALSTKKISFIIPFYNIPIEMLRTCIDSILALSLRSAEREIIIVDDGSDVCPMNELTLYHDHIIYIRQSNAGLSAARNIGIRASTGEYLQFVDADDYLIQAPYEHCLDIVRYHDPDVVLFDSTDCNTNEVPYAFEGPIEGNLYMRRNNIKSAVWHYIIRRKTLATLRFREGIVHEDEEFTPQLLLRTERLFITDAKAYFYRKRAGSIIRDRDTHRTDQRLNDKESVILRLRELASTGPEADREALQRRVAQLTMDYLYDVITQTRSAKEVRACVNRLYQHGLFPLPDRNYTQKYKWFRRLSMLLRPFIR
>NZ_CP013195.1|WP_025065637.1|1359504_1360461_+|signal-recognition-particle-docking-protein-FtsY
MGIFGLFNKSKKETLDRGLEKTKQSVFDKLSRAIVGKSKVDDSVLDDLEEVLITSDVGVETTLKVIGRIEERVARDKYVSTGELNGILRDEIAALLAENHSEDNENWDLPTDHKPYVILVVGVNGVGKTTTIGKLAYQFKKAGKKVFLGAADTFRAAAVEQISIWGERVGVPVVKQQMGSDPASVAFDTLSSAKANGADVVLIDTAGRLHNKIGLMNELKKIKDVMKKVLPEAPDEIMLVLDGSTGQNAFEQAKQFAAVTQVTSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEGMEDLQLFNKRQFVDSLFNVR
>NZ_CP013195.1|WP_025065638.1|1360457_1361753_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MRKNQVDIITMGCSKNLVDSELLMRQFEANGYRCTHDSKSPQGEIAVINTCGFIESAKEESINTILEFAKAKEEGRLNRLYVMGCLSQRYQKELEQEIPQVDKFYGKFNYKLLLQELGKADVAVCDGRRSLTTPRHYAYLKISEGCDRHCAYCAIPLIVGKHHSRPKEEILQEVRELVAIGVKEFQVIAQELTYYGADIDGKRHIADLVNSIADIQGVKWIRLHYAYPNQFPIELLNVIRERPNVCKYLDIAFQHISDHVLQRMQRHVSKAETVSLIEKIREAVPGIHLRTTLLVGFPGETEADFEELMDFVRWARFERMGAFTYSEEEGTYSAQHFEDDIPEAVKQQRLDRLMALQQDISAEIEADKVGQVMKTIIDRKEGDYYIGRTEFCSPEVDPEVLIPATRALRRGCFYDVRITASEEFDLYGEVV
>NZ_CP013195.1|WP_025065639.1|1361749_1362043_+|HU-family-DNA-binding-protein
MNNKDFITELAQRCGYTQADTQKLMRTLIDKMGETFGEGDNLLVSGFGTFEVKKRLERVAVNPATQQRMLVPPKLVLCFKPVPSVKARLKNGGDTNE
>NZ_CP013195.1|WP_025065640.1|1362020_1363148_+|HU-family-DNA-binding-protein
MEETRMSRRNILDLAASLAEKHGLSADDATQFINQIFDVLSDGLQSDKQVKIKGLGTFKVTTINSRESVDVNTGERILINERDRISFTPDTSMRDLVNRPFSQFETVPLRDDVEFTEPEAQAEPIETTSYQETPIPNQLSKSELTLLDTASELVIPEPDTEESAPVIIEQPQPVIEEPIPVTTPEPTTEIIENTPEPDRQIDELMSQLRRSHRLIYTLVACLFVLVIGGAATIFYVINQVNESSQSSIVAPSTPKAVSHRPAPKVVVSPPSAPSQKIQKPTPEPEQPQPEPEDPMLVQYNRDIRIRTGAYRITGIATTVKARSGQTLSEISRTHLGPGMDCYIEAVNPGVTNLQMGQKINIPKLERKRKRSLSPR

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Crispr_ID: NZ_CP013195_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013195_8

1799809-1800042

Orphan

Consensus_repeat	Method
TTTNGATCAAAAATNANTCTGGGA	CRT

5 spacers

DEDDh

The CRISPR arrays of NZ_CP013195_8

>merge|NZ_CP013195|8|1799809-1800042|CRT
TTTTGATCGAAAATAAATCTGGGAGGCAAAACCGTACCCAAGTTTTGATCAAAAATGAGTCTGGGAGGCAAAACCGTACCCAAGTTTTGATCAAAAATGAGTCTGGGAAGCAAAAATGCACTACGTTTTCGATCAAAAATGAGTCTGGGAGGCAAAACCGTACCCAAGTTTTGATCAAAAATGAGTCTGGGAAGCAAAAACGCACTACGTTTTCGATCAAAAATAAATCTGGGA

>NZ_CP013195|8|2|1799809-1800042|CRT
TTTTGATCGAAAATAAATCTGGGA	GGCAAAACCGTACCCAAG
TTTTGATCAAAAATGAGTCTGGGA	GGCAAAACCGTACCCAAG
TTTTGATCAAAAATGAGTCTGGGA	AGCAAAAATGCACTACGT
TTTCGATCAAAAATGAGTCTGGGA	GGCAAAACCGTACCCAAG
TTTTGATCAAAAATGAGTCTGGGA	AGCAAAAACGCACTACGT
TTTCGATCAAAAATAAATCTGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013195.1\|WP_060544361.1\|1807469_1811030_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NZ_CP013195.1\|WP_025066065.1\|1789676_1790369_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239489
NZ_CP013195.1\|WP_025066063.1\|1791634_1792813_+\|DUF2027-domain-containing-protein	unknown	unknown	gnl\|CDD\|370595
NZ_CP013195.1\|WP_025066055.1\|1801571_1802270_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|380042
NZ_CP013195.1\|WP_025066057.1\|1800598_1801096_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NZ_CP013195.1\|WP_025066053.1\|1803529_1803820_+\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|377496
NZ_CP013195.1\|WP_060544359.1\|1804457_1806062_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066056.1\|1801095_1801572_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|187742
NZ_CP013195.1\|WP_025066067.1\|1786356_1787055_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP013195.1\|WP_025066052.1\|1804189_1804408_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_060544357.1\|1785324_1786347_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238744
NZ_CP013195.1\|WP_060544358.1\|1794966_1796475_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066061.1\|1796478_1797093_-\|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl\|CDD\|293192
NZ_CP013195.1\|WP_025066054.1\|1802418_1803537_+\|DNA-replication-and-repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NZ_CP013195.1\|WP_025066066.1\|1787096_1789673_+\|BatD-family-protein	unknown	unknown	gnl\|CDD\|379280
NZ_CP013195.1\|WP_025066060.1\|1797127_1799569_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NZ_CP013195.1\|WP_060544360.1\|1806083_1807352_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066058.1\|1800146_1800530_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066062.1\|1792820_1794788_+\|NAD(+)-synthase	unknown	unknown	gnl\|CDD\|235057
NZ_CP013195.1\|WP_025066064.1\|1790365_1791616_+\|S-adenosylmethionine:tRNA-ribosyltransferase-isomerase	unknown	unknown	gnl\|CDD\|234666

Protein	Function_ID	Function_description	E-value
NZ_CP013195.1\|WP_060544361.1\|1807469_1811030_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP013195.1\|WP_025066065.1\|1789676_1790369_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239489	cd03395, PAP2_like_4, PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	2.54094e-40
NZ_CP013195.1\|WP_025066063.1\|1791634_1792813_+\|DUF2027-domain-containing-protein	gnl\|CDD\|370595	pfam09640, DUF2027, Domain of unknown function (DUF2027). This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with pfam01713.	4.1806e-80
NZ_CP013195.1\|WP_025066055.1\|1801571_1802270_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|380042	pfam17874, TPR_MalT, MalT-like TPR region. This entry contains a series of TPR repeats.	1.71922e-06
NZ_CP013195.1\|WP_025066057.1\|1800598_1801096_-\|3'-5'-exonuclease	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	3.11522e-73
NZ_CP013195.1\|WP_025066053.1\|1803529_1803820_+\|DUF721-domain-containing-protein	gnl\|CDD\|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	3.83335e-19
NZ_CP013195.1\|WP_025066056.1\|1801095_1801572_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|187742	cd09209, Lumazine_synthase-I, lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-I. Type-I LS, also known as RibH1, catalyzes the penultimate step in the biosynthesis of riboflavin in plants and microorganisms. LS catalyse the formation of 6,7-dimethyl-8-ribityllumazine by the condensation of 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione with 3,4-dihydroxy- 2-butanone-4-phosphate. Subsequently, the lumazine intermediate dismutates to yield riboflavin and 5-amino-6-ribitylamino- 2,4(1H,3H)-pyrimidinedione, in a reaction catalyzed by riboflavin synthase synthase (RS); RS belongs to a different family of the Lumazine-synthase-like superfamily. Riboflavin is the precursor of flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential cofactors for the catalysis of a wide range of redox reactions. These cofactors are also involved in many other processes involving DNA repair, circadian time-keeping, light sensing, and bioluminescence. Riboflavin is biosynthesized in plants, fungi and certain microorganisms; as animals lack the necessary enzymes to produce this vitamin, they acquire it from dietary sources. Type II LSs are distinct from type-I LS not only in protein sequence, but in that they exhibit different quaternary assemblies; type-I LSs form pentamers. The pathogen Brucella spp. encode both a Type-I LS and a Type-II LS called RibH1 and RibH2, respectively. RibH1/type-I LS appears to be the functional LS in Brucella spp., whereas RibH2/type-II LS has much lower catalytic activity as LS. The pathogen Brucella spp. have both a type-I LS and a type-II LS called RibH1 and RibH2, respectively. RibH1/type-I LS appears to be a functional LS in Brucella spp., whereas RibH2/type-II LS has much lower catalytic activity as LS.	1.57803e-70
NZ_CP013195.1\|WP_025066067.1\|1786356_1787055_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	8.17899e-11
NZ_CP013195.1\|WP_060544357.1\|1785324_1786347_+\|VWA-domain-containing-protein	gnl\|CDD\|238744	cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup are bacterial in origin. They are typified by the presence of a MIDAS motif.	4.93981e-52
NZ_CP013195.1\|WP_025066054.1\|1802418_1803537_+\|DNA-replication-and-repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	1.9342e-93
NZ_CP013195.1\|WP_025066061.1\|1796478_1797093_-\|outer-membrane-lipoprotein-carrier-protein-LolA	gnl\|CDD\|293192	pfam16584, LolA_2, Outer membrane lipoprotein carrier protein LolA. LolA_2 is a family of Bacteroidetes outer membrane lipoprotein carrier protein LolA-like proteins. The exact function is not known.	3.39944e-65
NZ_CP013195.1\|WP_025066066.1\|1787096_1789673_+\|BatD-family-protein	gnl\|CDD\|379280	pfam13584, BatD, Oxygen tolerance. This family of proteins carries up to three membrane spanning regions and is involved in tolerance to oxygen in in Bacteroides spp.	0
NZ_CP013195.1\|WP_025066060.1\|1797127_1799569_-\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.02897e-126
NZ_CP013195.1\|WP_025066062.1\|1792820_1794788_+\|NAD(+)-synthase	gnl\|CDD\|235057	PRK02628, nadE, NAD synthetase; Reviewed.	0
NZ_CP013195.1\|WP_025066064.1\|1790365_1791616_+\|S-adenosylmethionine:tRNA-ribosyltransferase-isomerase	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	8.35056e-123

>NZ_CP013195.1|WP_025066060.1|1797127_1799569_-|DNA-translocase-FtsK
MARKKAERKPKSLGEAVGLKYIFNNEKSNFLLGIILLFIAVYLIIAMISFFKTGQADQSLLESMRPGEWLNKDRQFTNYCGSVGAMLAYYLITVNFGLPSFLIPAFIILVSLRMMNAYRVNLWKWFFGMALVMIWSSVTLAKFLTPLMGDQVFNPGGNHGLFCVQQLENIIGPPGLTALLLFVALAFLTFLSAETITVIRKALNPVKYMTSKIKMTVTNNLTKNESGEEEIAMQPTIEEIPVAPQPVVDQPTSVNDTETILGQPIAVQVSHPLPAGNDEGGHFTVEVPKGEAVAGSNTLTAEEILSTPINPREPFLNYKFPTLDLLKKYDNDGKPEVDMEEIRSNNQRIVEVLNSFGVQIREIKATVGPTITLYEITPAEGVRINKIRNLEDDIALSLAALGIRIIAPIPGKGTIGIEVPNKKPNIVSMESILNSKKFKETKMDLPIAIGKTITNEVYMADLTKIPHLLVAGATGQGKSVGLNAIITSLLYKKHPNEMKLVLIDPKKVEFSIYSPIASHFMATLPENEDEPIITDVTKVVRTLNSLCKLMDTRYDLLKLAGARNIKEYNEKFVNHKLDLTRGHDYMPYIVVVIDEFGDLIMTAGKEIEMPIARIAQLARAVGIHMVIATQRPTTTIITGNIKANFPGRMAFKVSAQIDSRTILDRSGANQLIGRGDMLILVGNEPVRVQCAFVDTPEVERINDYIVSQPGPVEPLELPEPAADEGEGGIGNGGADLHSLDPYFEEAAHAIVLSQSGSTSMIQRRFSIGYNRAGRLMDQLEAAGIVGQAQGAKPRDVLITDENSLNNLLAQLNR
>NZ_CP013195.1|WP_025066061.1|1796478_1797093_-|outer-membrane-lipoprotein-carrier-protein-LolA
MKRTILLSIILSLIAFAGIKAQNANQARTILDKAASVIGHSGGASANFKIIGSKLGNTSGNIAIKGNKFYANTPKAIVWYDGKTQWTYMRATNEVNISTPKEAKQMSMNPYTFINIYRTGYDMGVKSIGNNYQVHLIAQNKSRSIQELYILVDKNTYVPNQVKMRQSVGWITINISNFRTRKLNDKVFSFNSKDFPTAEIVDLR
>NZ_CP013195.1|WP_060544358.1|1794966_1796475_-|hypothetical-protein
MNRFELFRTLRRHRQWAERRAITAGQNKIAKFTLIFLSSFVLIYLISAAVMLAMLANQSHRFTSIELLMGVCPLILAIDFLMRFISQQTPAQIIKPYVLLPIPKYACINTFLATSLFTWGNLTWFALFLPYCLMSVVFSFGITQTLALLFLLWILILANSQWYLIVRTLLTDTQLWWLLPIGVYALIGAPFYIGADSGLAAFCEFWAGAGTAIHDANPLPFLFAILLLIALLAVNRRLQYIHIWRELSRTEQTQLHSVSEFRFLERYGTIGEYLKLEIKSILRNKNPRKSFISATAFVLVFSMLITFTSVYDGAFMGTFWCTYNFLIYAAMMIIRIMCNEGNYIDALMVRRENILALLQAKYFFYCAMLLLPFCLMLPTVFSGKWSLLMLVSYGIFTAGFQYFLVFQLAVYNKVTTPLNTKFISRSGIESNYIQIIEQLVAFSLPLILVSILQTFLSEMASYLIMFAIGIVFICTHRLWLRNIYVRLMARRYDNMASFRASR
>NZ_CP013195.1|WP_025066062.1|1792820_1794788_+|NAD(+)-synthase
MKHGFIKVASAVPLVKVGDCTYNVEQIISLVERAEEQNVEVVVFPELCITGYSCQDLFHQNILLDSAENALMMLLDFTRKRDVIVIVGLPIAVGDLLLNCAAVVQQGQLLGLVPKTYLPNYNEFYEKRWFASSQDLRTSNIRYAGSQITITSDPQLFYTCDGAIFGIEICEDVWAPTPPSNQLVLAGADLIFNLSASDELTGKHQYLKNLLAQQSARTMAGYVYSGCGCGESTQDVVYGGNALLYANGRMIGEGKRFAFEPQLCTGQIDIERLKSERRNNSTFVNAQRNIKDSIQNNRLSIRTIACKATQPHAFVLERNIDPYPFIPSSADMKTACEEIFNIQVAGLANRLMHTNSKIVILGISGGLDSTLALLVCVKTFDKLKMDRKGIIGVTMPGFGTTDRTHSNALSLMESLRVSMREINIAASVTQHFQDIGHDADVHDVTYENCQARERTQILMDLSNELGGLVIGTGDLSELALGWATYNGDHMSMYGVNSGVPKTLIRYLVKFVAETEVDARSQATLMDIIDTPISPELIPADEHGEISQKTEDLVGPYALHDFFLYYFLRFGFRPSKLYLLAKQAFGDAHPKAETYSDEVIKHWLKTFIRRFFSQQFKRSCLPDGPKVGSVSLSPRGDWRMPSDASASIWLAECEAL
>NZ_CP013195.1|WP_025066063.1|1791634_1792813_+|DUF2027-domain-containing-protein
MKIGDQVRFLSETGGGKVAGFQGKNIVLVEDEDGFQIPTAISDVVVVENDDYSTTRIVGDKMKQPTPEQTDGRSIKAKLKSGMDEDISEEEPDDDPADKEIAFRKPVEERKGGNQLSVYLAFVPVDIKEISNTEFDTYIVNDSNYHLHFAYLTAEGSSWTLRAANELEPNTKLYLETFNRQSLDERRHIAVQLTAFKRAKAFLLKPTIDVQLRLDPVKFYKLHTFQSNDFFETPALLYTIVENDKPSRSLVIDTKKLKAEMYQSAAPAESSRKQDAYQPRYADRKHRGNPLITKRKGDEDIIVVDLHAGEILETTAGMTAGDILNYQLQVFRDTLAAHAKHKGQRIVFIHGKGEGVLRRAIVNDLSYRYKNYSYQDASFQEYGYGATQVTIK
>NZ_CP013195.1|WP_025066064.1|1790365_1791616_+|S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
MTETKHIKISDYSYPLPENRIAKFPIPQRDHSKLLIYQHGNVSEDVFYHLPEYLPQGALMVFNNTKVIQARLHFRKETGALIEVFLLEPAQPTDYELMFQTTSHCAWLCMIGNLKKWKNGVLKRDFEINGHRLTLTATRQSPEMLSITGQTSGETYHWVDFQWDNDNVSFAEILEEVGELPIPPYLNRETQERDKTTYQTVYSKIKGSVAAPTAGLHFTDAVLAALDKRGIDREELTLHVGAGTFKPVKSEEIEGHRMHTEYICVHRQTLEKLLRHSGEAIAVGTTSVRTLESLYYIGLKLMRHPDASEAELHVNQWEPYEQPAQQVTPTDAIRAVLDYLDRNHLPALHTSTQIIIAPGYDYKIVKMLVTNFHQPQSTLLLLVSAFVKGDWRKIYDYALGHDFRFLSYGDSSLLIP
>NZ_CP013195.1|WP_025066065.1|1789676_1790369_+|phosphatase-PAP2-family-protein
MDIHTLLDLDRELFFWLNGSNSLFLDGLITILTSGFTWIPLYISLLYLVIKNNETMTQIMLIVGCCLFALLLSDSMTDFIMKPLVARWRPSNDPSIKYMVDIVGNLRDTPYGFFSAHASNTFSLALFFSLLVRNKALSIALVLWSLVNCYTRIYLGLHYPGDIICGLLWGSFAGGVAYLLYHRVYEKISPKQNYISTQYTNTGYSLSDIDIVINVLIFTFCAVMIYSLIK
>NZ_CP013195.1|WP_025066066.1|1787096_1789673_+|BatD-family-protein
MRKLSLLYIVVFIATVVRAQSISVSAPSRVALGENFRIAYTVSTQSVENFRAGNIPSALEVIAGPYTSSQSSFQMVNGHTSSSSSITYTYTLYAGKNGTYTIPAAHATVNGRTIASRSVTITVSGTTRASANSAPKMHDDYEDEPHPRAAGSAISGSDLFIKVSANKRRVHEQEPILLTYKVYTTVDLTQLQGDMPDLTGFHTQEIPLPQQKSFHIERVNGRTYRCVTWSQYVMYPQMTGKLTIPSITFKGIIVQQNRSVDPFEAFFNGGSGYTEVKRNIVAPGLTIQVDPLPHRPANFSGGVGQFNISAQLNKNEVRAGNPVSLQVVIGGVGNLKLIKQPVVNFPKDFDQYDAKVTDKTKLTTNGVEGNMIYDFLAVPRNQGQYTIPSIELTYYDTSTNQYKTIKTRSFNISVAKGDGKTGDVVDYSEEKDRDIRPLKLGNTSQHAIDDFFFDSTSYWISLLLPLCAFVVLLIVFRRRAIENADIVKVKGRKANKVATKRLRKANQLMLQGKQSEFYDEVLRALWGYVGDKLNMPIEQLSRENIADKLQQNTVDSATIKKFTSALDECEMEHYAPGDIAGNMAKTFESAMTAIMEIEDVMKKKTKKTVNTSAKALFLLSMLTLSLSVSAVTKQEADAEYQKGNYQQAIKDYEDLLKKGVSADLYYNLGNAYFRSDQITKAILSYERAHLLAPGDKAINFNLQFSRSKTIDKIAPPSEMFFITWYYALVNFTDVDTWAFTAIVSIVAALLLILLYLFGPSIVVRKIGFFGASGFFVLFLCSNLFAFQQKDKLINRTGAIVVAPSVSVKTTPVKSGTDLFIVHEGTRVDVVDRTLHDWVAIRLDDGREGWILSKAIETI
>NZ_CP013195.1|WP_025066067.1|1786356_1787055_+|tetratricopeptide-repeat-protein
MRVEIRVILITLILTFVCVDALWAQADRQAIRQGNRLYRRQQFAKSEVEYRKAIARNAENPQAVYNLGCALMQQQKDSAAIVQYERAGKLETNKIRKAKVYHNIGVICQGHQMYGEAIKAYEEALRNNPNDNETRYNLALCKRQNKQQNKGGSSKDNKKKNDQDKQKQDQKQQNKDKDKNKDQQKQQQPQEQMSKENAEQLLNAAVQEEKATQQRLKKAMQKQGTKRLQKNW
>NZ_CP013195.1|WP_060544357.1|1785324_1786347_+|VWA-domain-containing-protein
MFRFEDPSYLWLLLIVPLLTVIRLAIWRQRRSKLRLFGDPLLLKEMMTGVSAYRPTVKFWLLQAALALLILMLARPQMGSKISHEKRNGIETIIALDISNSMLCQDVAPTRLDKSKLLVENLVDKFTNDKIGLIVFAGDAFVQLPITSDYVSAKMFLQNIDPSLIATQGTDIAHAINLSINSFTQQENVGKAIIIITDGEDHEGGAVEAAKAAKKKGINVFILGVGTTAGAPIPDGNGGYMKDVSGQTVMTALNEQMCREIAQAGSGTYIHVDNTNDAQEKLNNELTKLQKGETESVIYSEYDEQFQAFGILVVLLLIAEVCLLERKNPLFKNVKLFKRK
>NZ_CP013195.1|WP_025066058.1|1800146_1800530_-|hypothetical-protein
MKLKELLQAYDFDELMPVIADMFPGTGKYRHPLKVAYNLLMDTSVAPSKKKIRYRMIHHDKSSYSTVGAEDRDFEGTWSLCLGKDVVRESGVDLSDIELAANCLVNLCLISQYPQAFEEAHALLIKS
>NZ_CP013195.1|WP_025066057.1|1800598_1801096_-|3'-5'-exonuclease
MKDFAAIDFETANGYRTSVCSVGVVIVEDGKIVDTYYHLIRPIPNFYTQWTTQIHGLTRQDTDRQPLFPEVWAEIAPRIKYLPLVAHNKAFDENCLKAVFQAYEMTYSDYPFLCTLMGARRRFRRGELPNYQLQTVALRCGFDLKAHHHALADAEACAHIALRIL
>NZ_CP013195.1|WP_025066056.1|1801095_1801572_-|6,7-dimethyl-8-ribityllumazine-synthase
MATSLHNLSDYDTNQVPDASNMCIGIVVSEWNPEITGALLSGAVSTLERHGALSENIHVKRVPGSFELIYGAHQMCLNGGYDAVIILGCVIRGETPHFDYICQGVTYGIARLNSTGEIPVIYGLLTTNDLQQAKDRCGGRLGNKGDECAIDAIKMAKF
>NZ_CP013195.1|WP_025066055.1|1801571_1802270_-|tetratricopeptide-repeat-protein
MANKHVQGAANEALPKSEAFLTQYRKPIFITAAAIIIVIAGFFAYKSLFAGPREEKASTALAKGQEYFNNEKFDKALNGDGQGYAGFNAIISDYGGTDAANLARLYAGLSYANLGKWAEAQQSLDAYSPSSDAMVSPAAMAALGNAYAHLNQLDKAVSSLKKAADMADSKALDGANYSLSPIFLLQAGEILESQNKKDEALSVYQDIKKKYVNSPLVQNQEIDKYIERASVK
>NZ_CP013195.1|WP_025066054.1|1802418_1803537_+|DNA-replication-and-repair-protein-RecF
MILQNISILNYKNIRAANLELSPKMNCLIGHNGEGKTNFLDAVYYLSFCRSASNPIDSQLITHEADFFVLEGHYQTEDGDEENIYCGMKRGVKKHFKRNKKEYKRLSQHIGLIPLILVSPADSTLIEGGSEERRHLMDIVIAQYDHTYIEALMLYNKALQQRNALLKTEQESDPALMEIWEQQMAQQGEIVFEKRAAFVEQLIPVFQDIHNRLSGGKETVTLRYISHCQRGPLLEVIQRDRPKDRAVGYSLHGIHRDDLEMLLDDYQMKREGSQGQNKTYVLALKLAQFDFLRRTASQTTPLLLLDDIFDKLDAHRVEQIVRLVAGEDFGQIFITDTNRDHLDRILRNSAFDYKLFHVVNGEITEKKGDTDV
>NZ_CP013195.1|WP_025066053.1|1803529_1803820_+|DUF721-domain-containing-protein
MFKRDVLPLSQILQRLLREGGFETPLNQKRLVESWSKVVGPTVALYTSETFIKNQTLFVKLLNPALRQDLSMMRSQLICRLNAEVGSQVITDIRFY
>NZ_CP013195.1|WP_025066052.1|1804189_1804408_+|hypothetical-protein
MKHNQIERWAYAKPAVETIRLEPHSELMDTSFPSQHQPGQPGTGPMPSSAKQNFFDDFDEDEIDDIPQSQPL
>NZ_CP013195.1|WP_060544359.1|1804457_1806062_+|hypothetical-protein
MKTNIFYTLALGALLGLASCADNDMAQHNPGGNADTNDDGLTTFIAEKPTDTRTSMNYANGAFFWEAGDYIYVQDDDGTWQKSSNAPTAKTASFEFKVPGKFTGNTYTVYYPGKGKTNNKVTIAAAQTQTEPDDTKHFGTSGDCGIGTAVKSGVNFNFTIKHEPTILVFNLTAGNAAFKKCHLTRIEVTATDNITGKYTLTTGGLAESIGAKQIILTTKGAPSSPTEKGFALSSNNRSYMIIRPGMHTLKVRFWLKDYSTGIEGTVTKSYPAFTYAPNTYYNMPTSSSGGGFDSRSGASGNNYYMWDAKENYWYGYEWNHPNHNNQLQPTDNGGCPNYSPQPGDANRYANTTKFFAGVGEGSTPLFNPAYTNHVPNANEMSWYQEKGDPHWDANELWATMGKLHKGGMWFKKRTNIPGFNSNVCANNSTDMRSTFRSVTTHPSHTPLTVAEQTGYFFLPPTGYYKEGYLSVGFSDLGITGFYWSSSACPLDLEESTVLIFSSTEVKVYRSRRNFGYVAAPFRTSSSTGEGPFFE
>NZ_CP013195.1|WP_060544360.1|1806083_1807352_+|hypothetical-protein
MRKTAHPSRFFSKKRRRELKNRDFSAKNGAGNSKIAIFWQKTAQATQKSRFFGRKRRRQLKNRDFLAKNGAGSKKIAIFRQKTAQGAKKSRFFISTFHRQYKKIYFSIHSKPKPKTMEIKTINKAQLHHMEHFQFAGHVLAMCKTANVEKLNPLLAPLEAAIAKEDEALNLPQKMEGTRELSELDSARDKAYRVLTLLLDACLLDTNKNIAGPAQMLRDILDRYPDTAAQNYAKETAMIQNLITDLNTPEAKLSVGRTNLQGAVARLTAANAAFDKCFQARFKKTIPTGTFDIKQLRAATDRALNAVLRRIDSLDDLEPSAKITALINEYNAVVDNRHTLLANRAATNKARAERQLEELRKELDPLIRKFEQENGIAPNVLVFTGKTKGTGKSKAYELAYSTDPKRTMWVVREKDELKEVKR
>NZ_CP013195.1|WP_060544361.1|1807469_1811030_+|isoleucine--tRNA-ligase
MAKRFAEYNGLDLTKINNDILKEWENNDVFRRSIAEREGCPQFVFFEGPPSANGHPGIHHVLARSIKDAFNRYKTMKGFQVYRKAGWDTHGLPVELGVEKELGITKKDIDNRKSPKYISVEDYNRKCRENVMKFTEEWRKLTEKMGYFVDLDHPYITYDNKYIETLWWLLKQLHSKGLLYKGYTIQPYSPAAGTGLSSHELNLPGCYRDVKDTTVTALFKVLNPRDEWTKWGTPYFTAWTTTPWTLPSNTALCVGPNIRYAAIETYNPYNGEPITAIIAESRLDAYFKPEGRDLPLESYQHGDKTVPYRVIGTYSGTELVGLTYRQLMPWVKPSAKLDVNAPEFVHRYAAAHPEKTFMGENGKDKFVEMAECAFRVIPGDYVTTEDGTGIVHIAPTFGADDAKVAKDAEVPSLFLINKKGETRPMVDLQGKYYLTDELDNNFRTACVDAKAYGHHAGDYVKNAYDPRFNVDGYDEAAANKAEDLNIIICMEMKQEGIALKIEKHVHNYPHCWRTDKPILYYPLDSWFIKSTARKERMVELNKTINWQPESTGTGRFGNWLENLNDWNLSRSRFWGTPLPIWRDEDGKEICIGSIEELYTEIEKSVAAGVMSSNPMKDKGFVPNDFDKENYDKIDLHRPYVDDIVLVSESGKPMHRETDLIDVWFDSGSMPYAQVHYPFEHRDAIDKRTAFPADFINEGVDQTRGWFFTLHAIAAMVFDSVAFKNVISTGLVLDAKGNKMSKHVGNVVDPFEMIDQYGADSVRFYMMTNSEPWDNLKFDAGGVDEVRRKFFGTLYNTYSFFALYANVDGFDPTEPQIKLEDRPEIDRWILSSLHTLIKGVDHELQSYDPTRAGRLIDTFVNDDLSNWYVRLNRKRFWGKEMSADKRSAYQTLYTCLMTVAKLLAPFTPFYADQLWKDLGGEQADRTCSVHLVKFPEADEQAIDRELEARMEMAQKITSMTLALRRKVNIKVRQPLQQIMIPAIDTTQKRHIEAVKDLIISEVNVKELNFVEGNGVLIKKVKCNFRTMGKKYGKLMKDIAAQLSALDQDRIAAFERNGKMDLNIAGQSVSVDITDVEIISEDIPGWLVANEGNLTVALEVELTDELRHEGMARELINRIQNIRKESGLEITDRIRVTLSPHPQIEAAVTRYDEYIRTQVLADRIDLADNGGVEADFDGFKLHIEIAKI

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Crispr_ID: NZ_CP013195_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013195_9

1931890-1932044

Orphan

Consensus_repeat	Method
TAACCTTCTGATCCGTAGTCAGATGCTCTATTCAGTTGAGCTACGGAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013195_9

>merge|NZ_CP013195|9|1931890-1932044|CRISPRCasFinder
TAACCTTCTGATCCGTAGTCAGATGCTCTATTCAGTTGAGCTACGGAGCCAATCCATCTTGTTTAATTGCAAATCAAAAAGTGACTCCGATGGGATTCAAACCCGTAACCTTCTGATCCGTAGTCAGATGCTCTATTCAGTTGAGCTACGGAGCC

>NZ_CP013195|9|8|1931890-1932044|CRISPRCasFinder
TAACCTTCTGATCCGTAGTCAGATGCTCTATTCAGTTGAGCTACGGAGCC	AATCCATCTTGTTTAATTGCAAATCAAAAAGTGACTCCGATGGGATTCAAACCCG
TAACCTTCTGATCCGTAGTCAGATGCTCTATTCAGTTGAGCTACGGAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013195.1\|WP_025066698.1\|1923650_1923980_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066104.1\|1930372_1931560_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|99747
NZ_CP013195.1\|WP_025066699.1\|1924524_1925472_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP013195.1\|WP_025066696.1\|1922773_1923010_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066099.1\|1937376_1937895_+\|DUF4494-domain-containing-protein	unknown	unknown	gnl\|CDD\|379718
NZ_CP013195.1\|WP_025066105.1\|1928145_1928871_+\|methyltransferase	unknown	unknown	gnl\|CDD\|226608
NZ_CP013195.1\|WP_025066097.1\|1938682_1940485_-\|M6-family-metalloprotease-domain-containing-protein	unknown	unknown	gnl\|CDD\|274507
NZ_CP013195.1\|WP_060544377.1\|1929144_1930173_-\|YegS/Rv2252/BmrU-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP013195.1\|WP_024991757.1\|1934786_1936244_-\|aminoacyl-histidine-dipeptidase	unknown	unknown	gnl\|CDD\|349885
NZ_CP013195.1\|WP_004345305.1\|1921409_1921778_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
NZ_CP013195.1\|WP_025066107.1\|1925635_1927351_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066103.1\|1932157_1934212_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP013195.1\|WP_025066098.1\|1937898_1938576_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143483
NZ_CP013195.1\|WP_025066094.1\|1943908_1944160_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_148299633.1\|1923027_1923555_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066100.1\|1936561_1937194_+\|OmpH-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|377167
NZ_CP013195.1\|WP_025066102.1\|1934410_1934779_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066106.1\|1927408_1927645_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025066095.1\|1941466_1941898_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|375718
NZ_CP013195.1\|WP_025066096.1\|1940505_1941291_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319871

Protein	Function_ID	Function_description	E-value
NZ_CP013195.1\|WP_025066104.1\|1930372_1931560_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|99747	cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.	3.07211e-139
NZ_CP013195.1\|WP_025066699.1\|1924524_1925472_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	5.47813e-76
NZ_CP013195.1\|WP_025066099.1\|1937376_1937895_+\|DUF4494-domain-containing-protein	gnl\|CDD\|379718	pfam14902, DUF4494, Domain of unknown function (DUF4494). This family of proteins is found in bacteria. Proteins in this family are typically between 154 and 172 amino acids in length. There are two conserved sequence motifs: VDA and EAE. There is a single completely conserved residue E that may be functionally important.	2.73431e-77
NZ_CP013195.1\|WP_025066105.1\|1928145_1928871_+\|methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	3.64734e-47
NZ_CP013195.1\|WP_025066097.1\|1938682_1940485_-\|M6-family-metalloprotease-domain-containing-protein	gnl\|CDD\|274507	TIGR03296, hypothetical_protein, M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than pfam05547.	2.33608e-54
NZ_CP013195.1\|WP_060544377.1\|1929144_1930173_-\|YegS/Rv2252/BmrU-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	6.31516e-42
NZ_CP013195.1\|WP_004345305.1\|1921409_1921778_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	1.07881e-06
NZ_CP013195.1\|WP_025066103.1\|1932157_1934212_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP013195.1\|WP_025066098.1\|1937898_1938576_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143483	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.	7.63825e-92
NZ_CP013195.1\|WP_025066100.1\|1936561_1937194_+\|OmpH-family-outer-membrane-protein	gnl\|CDD\|377167	pfam03938, OmpH, Outer membrane protein (OmpH-like). This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.	5.74062e-18
NZ_CP013195.1\|WP_024991757.1\|1934786_1936244_-\|aminoacyl-histidine-dipeptidase	gnl\|CDD\|349885	cd03890, M20_pepD, M20 Peptidase D has specificity for beta-alanyl-L-histidine dipeptide. Peptidase M20 family, Peptidase D (PepD, Xaa-His dipeptidase; X-His dipeptidase; aminoacylhistidine dipeptidase; dipeptidase D; Beta-alanyl-histidine dipeptidase; pepD g.p. (Escherichia coli); EC 3.4.13.3) subfamily. PepD is a cytoplasmic enzyme family characterized by its unusual specificity for the dipeptides beta-alanyl-L-histidine (L-carnosine or beta-Ala-His) and gamma-aminobutyryl histidine (L-homocarnosine or gamma-amino-butyl-His). Homocarnosine has been suggested as a precursor for the neurotransmitter gamma-aminobutyric acid (GABA), acting as a GABA reservoir, and may mediate anti-seizure effects of GABAergic therapies. It has also been reported that glucose metabolism could be influenced by L-carnosine. PepD also includes a lid domain that forms a homodimer; however, the physiological function of this extra domain remains unclear.	0
NZ_CP013195.1\|WP_025066095.1\|1941466_1941898_-\|DNA-binding-protein	gnl\|CDD\|375718	pfam18291, HU-HIG, HU domain fused to wHTH, Ig, or Glycine-rich motif. Rapidly-diverging family of HU domains predominantly observed in the bacteroidetes lineage with a predicted role in recognition and possible interception of the DNA of parasitic elements, a counter-conflict strategy preventing incorporation of these elements into the host genome.	2.28717e-18
NZ_CP013195.1\|WP_025066096.1\|1940505_1941291_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319871	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein. This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.	3.74451e-09

>NZ_CP013195.1|WP_025066104.1|1930372_1931560_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MGQLQDRYKNYREPQKFIEAGVYPYFRAITSKQGTEVEMGGHRVLMFGSNAYTGLTGDERVIKAAREALEKYGSGCAGSRFLNGTLDIHVQLEKELAEFEHKDDCLCFSTGFSVNQGVLAVVVGRGDFIICDDRDHASIVDGRRLSFATQLHYKHNDMADLERVLQKLPREAVKLIVVDGVFSMEGDLAKLPEIIALKHKYNCSVMVDEAHGLGVFGKQGRGVCDHFGLLDEVDLIMGTFSKSLASIGGFIASDKDTINFLRHNCRSYIFSASDTPAATAAAMEALHILKAEPERIENLWKVTNYALKRFREEGFEIGDTESPIIPLYVRDIDKTFLVTKQAFEAGIFINPVVPPACAPQDTLVRLALMATHTEAQVERGVQVLKKIFVEQGLIK
>NZ_CP013195.1|WP_060544377.1|1929144_1930173_-|YegS/Rv2252/BmrU-family-lipid-kinase
MKQRIVFIMNPISGTTNKAGIPELIRSTLNHDQFDYEIMMTEYAGHAAEIANRVKDDGVDIAVAVGGDGTVNEVARSIVHSRTALGIIPCGSGNGLARHLMLPMNLRKSIEVINMCEIHDLDYGVINDHPFFCTCGMGFDAFISMKFAEAGKRGPITYIENVLRGGLQYKPETYEIEDETGLKRYKAFLISCANASQYGNNAYIAPQASMSDGLMDVVIMEPFGILDAPQISIDMFNKTLNKNSKIKTFRCKELHIHRSKPGCIHYDGDPAMSGQDIDVHLEEKGIKIIVNPNADKSLRKPNMIQSAAADLFYEISSLRKDITKQSRRVQALSKVMQRKLNL
>NZ_CP013195.1|WP_025066105.1|1928145_1928871_+|methyltransferase
MADFTFKRFVIHQDRCAMKVGTDGVLLGAWAAGGRKILDIGTGTGLIALMMAQRFPVACLTAIDIEHGACVQARYNIACSDFANVDVQEISLQDFTRQRHVNSVHDRHIMKYDSIVSNPPFFVNALKSKDERRTMARHNDSLSYRDLFGCAAELLADGGQFSVVIPADCLVDFVSEGYIYGLFLHRKYAVRTVVNKSPKRYLLSFSNIPPVAEDIQEVFLMDENSKRSAWYAEITREFYVR
>NZ_CP013195.1|WP_025066106.1|1927408_1927645_-|hypothetical-protein
MKENQVEKSVYERPTCSVMNTCIEHPLCAVSVRPSASGSYEGSWDADQTHEGSAIIGDGSGIAPAKQHSFWDEEEEDF
>NZ_CP013195.1|WP_025066107.1|1925635_1927351_-|hypothetical-protein
MNKQHYLSIAMGMLLPLFAACSSDDNLDKDSAKVDVTTRMEFPVTFADYNQDTEVGNTRAGANPSDTLNRKIVDMGNGIIADVTLRKDRENLSGRPTDDATTRTLPGSNSYTMLAYQGGVLKGEITGVISGNSFTPNAGGAQDISLEPGNYDFVLYPTPYFTRSGNTLTLNSPNNNAMLGRTNYTVTATPHKQQVPFEMKHAVARVKLNYITYIKTQQQTHSGFSLSAVNPAEAPNTATYDVATDTWSYSGSGGDLGFGGDAYVNPWLETGSYGSYKYQSSGYSYVIPGANVTNVKASFMNMKIYGEELNGKTITLALNPALATVANGSYIVNITFRYNFLYLMSDGTTGLWTETTHAGGTKTPIAVVVSRSRRLAVALQNVDGGAGFYWRDGSIMYQSNSTVAYASLGMPGNPTDYDGYKWTWEASGSADGTTIKGNEQTKYPAFYAAGHYTPTLPAGVTLSGSIVGKKWHLPSISEVETAFRGLKSIPPSQNFNPIMYNYPLTISPTTYYYNMMPFAFEQVGGATLSDTVTSTEITGASSADSDGPAIVLENNRFNLGRSGKVRPFIIY
>NZ_CP013195.1|WP_025066699.1|1924524_1925472_+|IS30-family-transposase
MYNHLTSQQRYAISTFIQNGWSRAKIADSIGVNHSTVTREINRNSGVRGTYNWETAQKNADYRKIRRPGNRAISQEIKDEAVRLLVEEQWSPEQISAVLKERGMSISHETIYKIIRTDKKNGGSLYLYCRHKLKHRARPVSGSGSIICNRVNISERPEEADGRRFGDFEMDTIVGKGNHGAILTLTEKSTGMLFMRKLNKGKEAKELAKTVVRILMPYKAFLKSITTDNGLEFACHEYITKKLGVTVYFTDPYSSWQKGSIENQNGLIRQYIPKSSTFENISHQFVTKIADKINRRPREKLNFRTPFECFYENIL
>NZ_CP013195.1|WP_025066698.1|1923650_1923980_-|hypothetical-protein
MSNNEMILAALGFSNWDSQLDEFKTNFGYDWTGEDLDEAIEVAGYNTSNVRNCLMEILWLKVVYYFVDTMDCSREMFDSYINGSLDTHFYYNGTEVKSEEELWKLVNAA
>NZ_CP013195.1|WP_148299633.1|1923027_1923555_-|hypothetical-protein
MNKEIHYKCRCTGQRFTFKEWCNYLKGNPPKVVHTYKEFCFNIADVCLTPHIKIDWAKKVCFFKVTTAQSDNGRWDFGLSYNFWTQGGCCGATYIDTLKDGYNTEKEAVSAALNRVEENCQRVIDEILFRDGDPNDDDANKLETRGSSALPILKDTMNKIKSYRKLFNPCQLELF
>NZ_CP013195.1|WP_025066696.1|1922773_1923010_-|hypothetical-protein
MLRFPRIEVIKRTIYVPIYRESYEVQTMRPNRPMQSKFGMSKTQANAYSKRMLALLKKEGYDKAVFKSVLIDLRKFVL
>NZ_CP013195.1|WP_004345305.1|1921409_1921778_-|single-stranded-DNA-binding-protein
MNAMNNFTVTGYVCKDAEVKNFEKAAIARFGIIIKHTERKGNETTTVSSIIGLETWVKNDDTATLELLKKGKEITVEGFFKPENYTKDGKNVTVLKNIATKVTAFVREEKQDAPKAKNRKAK
>NZ_CP013195.1|WP_025066103.1|1932157_1934212_-|molecular-chaperone-HtpG
MQKGNIGVTTENIFPVIKKFLYSDHEIFLREMVSNAVDATQKVKTLADKGDFKGELGDLTVRISIDKDKGTLTISDRGIGMTEEEIDKYINQIAFSGVNDFLDKYKDNANAIIGHFGLGFYSAFMVSKKVEIVTRSYQDDAKAVKWSCDGSPSFEIDEAQKADRGTDIVLFIDDDCKEFLEQNKIQELLNKYCKFLPVPIAFGKKTEWKDGKQVETEADNIVNDVEPLWTKAPSTLKDEDYQKFYRTLYPMQDEPLFWIHLNVDYPFNLTGILYFPRIQSNIDLQRNKIQLYCNQVFVTDQVEGIVPEFLTLLHGVIDSPDIPLNVSRSYLQSDANVKKISTYITKKVADRLQAIFKENRKDYEQKWDHLKLFINYGMLSQEDFYDRAKDFALMKDTDGKFFTFDEYKTLIKENQTDKDGFLVYLYANNTEEQYAYIEAAKAKGYNVLLLDGQLDVPVISMLEQKLEKSRFVRVDSDVADRLIIKEDAKKSELDDDQRDNLSQVFRTQMPAIDKTEFNVEVQALGETAQPVIITQSEYMRRMKDISKFQSGMGFYSQLPDTYTLVLNSDHGLIKKVLSDATTAMGEQLAPIQSDIKGQQARLSALRQAQSKKKPEEVTQAEKDDVQNTEKAIQEQKDKQQKIIADYAKGNDIVHQLIDLALLQNSMLKGEALSNFLKRSVDMIR
>NZ_CP013195.1|WP_025066102.1|1934410_1934779_-|hypothetical-protein
MTKIRNILFASLAAVFLSSCDEQYKAKQLVSNFLDRSLAKKDFAIENCSKLDSTYYITDSTLNAMRAASRKETPFIRARYEGVKRSKKLLFIRIDYTNNGRKHTQTFYMDDRLQHVVAFKNN
>NZ_CP013195.1|WP_024991757.1|1934786_1936244_-|aminoacyl-histidine-dipeptidase
MNKMNLKPARVFEQFAKINEIPRPSKHEEKMTAYLQEFGKSHGLETIVDEIGNVLIKKPATPGYENRQTVILQSHQDMVCDKLVDVEFDFNTDAIQTYVDGEWLKAKGTTLGADDGIGCAIELAILDSDDIEHGPLECVFTVDEETQLTGASAMKPGFMSGTMLINLDSEDEGEMFVSCAGGRSTVATFRFTREDAPKDYFFVEISLKGLTGGHSGDDINKRRANAIKILSRFVYNMEEKYGSRLVSFNSGKLHNAIPRDGRAVIAVPNAVKEQVRADWNVFTAAVEDEFHVTDTSMAFKMESTEPAKVISAEAGKNIVRALQAVDNGIFAICQDEALGGMVETSSNIAVVKTSETEMEILASQRSNVMSNLDNQCNTIKAVFQLAGAEVIQNDGYPAWKMNPNSQLTKAAVDAYKKIFGKEPIVRGIHAGLECGLFSEKYPELDMVSFGPTLRDVHTPDERLLIPTVQMVWDHLLEMLKHIPNK
>NZ_CP013195.1|WP_025066100.1|1936561_1937194_+|OmpH-family-outer-membrane-protein
MKKTKVIRALAVVVTATVVMSSCNQSNPQMDQKSETTGSAGTTNMKIAYVEVDSIMSRYQFCKDYSQILQKKGQNIQHTLAAKQQQLQAAAANFQQKVQQNAYTREQAEAIQANLQRQSSDVQALGQRLGNEFDAETAKFNKALRDSIQHFLTSYNKDKKYGLILSKAGDNLLYADKVYDITDVVIAGLNKAYKPSAAIKTATATAEKKK
>NZ_CP013195.1|WP_025066099.1|1937376_1937895_+|DUF4494-domain-containing-protein
MKSRTADWFETKIRYEKTMEDGSMKAVTESYVVDALSFTEAEASITEEMSMYISGDFKITGIKTAPYKEIFFSDNGNDDRWYRAKLQFITIDEKTEKEKRSNINYLVQAATLLGAVKNIDEVMSGTMIDYVIAGINETPIMDVFEHNHSLKRNESDDKAEYEQVDSETPEEA
>NZ_CP013195.1|WP_025066098.1|1937898_1938576_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MGIDVAENLRGVLASLPERIKLVAVSKYHPAEYIEAAYAVGQRAFGESHEQELAKKQAALPKDIEWHFIGHLQTNKVKYIAPYISMIEAVDSLKLLREINKQAAKNNRVIDVLLELHIAEEETKYGLTLSDCRSLLASGEWRELHNVRICGLMMMASNVEDERQIRAEFLTAATFFDEVKAQYFADNAAFKERSWGMSHDYRIAVDCRSTMVRVGTTIFGPRVYE
>NZ_CP013195.1|WP_025066097.1|1938682_1940485_-|M6-family-metalloprotease-domain-containing-protein
MRKLLLLFAVVMCTTTIRAAKANPQPVDITQPDGTILTIRVHGDEHFNWCSTVDGVVLAQVGNAYYVADIDREGRVKKTNQLAHNAAQRDHAEQALAARQNKKALFDAAQRAIEAARTRSYEWNATTFPHTGNPKALVILAEFSDVAFSINSPKQAFDEYLNATGALTDFGNKNNLNYGSVAKYFTDMSFGAFTPQFDVVGPVHLNQPLVYYGEGRSDRMDRLFPDACKAAQAMGVDFSKYDANNDGYVDLLYVIYAGYSASIGGNSIDCIWPKSGNYPTSEVFDGKQIGRYGVNGELNYNPSFSSLKQINGIGLFCHEFSHCMGLPDFYTTTAAPEATQEADNQELEYWDLMDGGEYVANGHRPTAYSAWEREAMGWATIETLNESKNDIELKTLDKGGKAYRIFNPNDASKQEYLLVENVQLEGWNNSPKHKGHGMLVYHVEYDPVSFSLSSNSVNNILGHPRMTLVPADGLLENIAKYLAASNRKGYYDQLKGDPFPGTSGKTELNRTMNLPNFKWYTGKGSDYTIGQAFKNIKEVGGIITFDFVKDYATGIDHSIHADETNAEGRIYTIDGRYMGTDKARLPRGLYIMNGRKFVIE
>NZ_CP013195.1|WP_025066096.1|1940505_1941291_-|4Fe-4S-dicluster-domain-containing-protein
MIFYLSGTGNTQWVAETLAQALGEPLINIAEIEEAECRFCVGEQERIGFCFPIHGWRPPFNVRSFVENLHIQHAEGHYCYAVCTAGDNIGEGMDLLQNDLHLIGLQLDAAWSLIMPESYVGLPFMDVDTPAKEKIKKEQAARDLKEITSHVIHCDRGIFKLTRGHWPRINSRLLGGFFLKYLITDKRFYVESNRCVKCGICADVCPTDDIDGGLGREPIWKHSGRCLTCFACYHHCPHHAIEFGRMTKHKGQYWFKRKALR
>NZ_CP013195.1|WP_025066095.1|1941466_1941898_-|DNA-binding-protein
MDYSLNPRKMSVGPLKGQTVYVPSLVCQKHTISFEELCAAMAEDSTVGEADVAAVFYKARKVLNRLCSLGYIVDAGPFGKFYPTITSKVVTDVKDFKPSEHIKRAQMRFVPTKDFRDLKDVEYNKVPKQERKKKDGGTPPQKP
>NZ_CP013195.1|WP_025066094.1|1943908_1944160_-|hypothetical-protein
MNQKQLERWGYIRPECEIIETSTEQFICVSVRPDAGLSSAPYTGNPMYDEKGEYDVGTILIGDPSTVAPAKQSGWFEEEEDFN

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Crispr_ID: NZ_CP013195_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013195_10

2274007-2274126

Orphan

Consensus_repeat	Method
AGGACGATAACCGCCCTGACGAGGTTGTCCATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013195_10

>merge|NZ_CP013195|10|2274007-2274126|CRISPRCasFinder
AGGACGATAACCGCCCTGACGAGGTTGTCCATAGCCACCTTGGCGTGGTTGATAGCCGCCACCATTATCATCATCGTTATTGTAGCGAGGACGATAACCGCCCTGGCGAGGTTGTCCATA

>NZ_CP013195|10|9|2274007-2274126|CRISPRCasFinder
AGGACGATAACCGCCCTGACGAGGTTGTCCATA	GCCACCTTGGCGTGGTTGATAGCCGCCACCATTATCATCATCGTTATTGTAGCG
AGGACGATAACCGCCCTGGCGAGGTTGTCCATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013195.1\|WP_025065274.1\|2276675_2277818_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|225439
NZ_CP013195.1\|WP_025065277.1\|2266720_2267245_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_060544431.1\|2280131_2281841_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372475
NZ_CP013195.1\|WP_025065281.1\|2263716_2264577_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_081784145.1\|2261272_2262361_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP013195.1\|WP_156409648.1\|2287352_2287457_+\|smalltalk-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065269.1\|2286778_2287249_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|375718
NZ_CP013195.1\|WP_060544430.1\|2277988_2279815_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP013195.1\|WP_025065270.1\|2284748_2286233_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|376340
NZ_CP013195.1\|WP_025065278.1\|2265555_2266707_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP013195.1\|WP_025065272.1\|2281837_2283274_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|376360
NZ_CP013195.1\|WP_025065283.1\|2258688_2260179_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP013195.1\|WP_025065275.1\|2271463_2272858_-\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NZ_CP013195.1\|WP_060544429.1\|2274486_2275833_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP013195.1\|WP_060544427.1\|2262367_2263618_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP013195.1\|WP_060544426.1\|2260186_2261173_+\|biotin/lipoyl-binding-protein	unknown	unknown	gnl\|CDD\|235136
NZ_CP013195.1\|WP_025065279.1\|2265056_2265458_-\|DUF1573-domain-containing-protein	unknown	unknown	gnl\|CDD\|377880
NZ_CP013195.1\|WP_036888427.1\|2267323_2271100_-\|DUF4795-domain-containing-protein	unknown	unknown	gnl\|CDD\|224117
NZ_CP013195.1\|WP_025065271.1\|2283340_2284741_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|372650
NZ_CP013195.1\|WP_025065273.1\|2279817_2280111_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013195.1\|WP_025065274.1\|2276675_2277818_-\|OmpA-family-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	1.23871e-21
NZ_CP013195.1\|WP_060544431.1\|2280131_2281841_-\|hypothetical-protein	gnl\|CDD\|372475	pfam13100, OstA_2, OstA-like protein. This is a family of OstA-like proteins that are related to pfam03968.	7.78328e-71
NZ_CP013195.1\|WP_025065269.1\|2286778_2287249_+\|HU-family-DNA-binding-protein	gnl\|CDD\|375718	pfam18291, HU-HIG, HU domain fused to wHTH, Ig, or Glycine-rich motif. Rapidly-diverging family of HU domains predominantly observed in the bacteroidetes lineage with a predicted role in recognition and possible interception of the DNA of parasitic elements, a counter-conflict strategy preventing incorporation of these elements into the host genome.	4.32977e-21
NZ_CP013195.1\|WP_081784145.1\|2261272_2262361_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.01107e-31
NZ_CP013195.1\|WP_060544430.1\|2277988_2279815_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	3.67456e-180
NZ_CP013195.1\|WP_025065270.1\|2284748_2286233_-\|IMP-dehydrogenase	gnl\|CDD\|376340	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.	0
NZ_CP013195.1\|WP_025065278.1\|2265555_2266707_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	5.80237e-19
NZ_CP013195.1\|WP_025065272.1\|2281837_2283274_-\|peptidylprolyl-isomerase	gnl\|CDD\|376360	pfam00639, Rotamase, PPIC-type PPIASE domain. Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline.	1.79963e-24
NZ_CP013195.1\|WP_025065283.1\|2258688_2260179_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	6.3912e-35
NZ_CP013195.1\|WP_025065275.1\|2271463_2272858_-\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NZ_CP013195.1\|WP_060544429.1\|2274486_2275833_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP013195.1\|WP_060544427.1\|2262367_2263618_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.19253e-39
NZ_CP013195.1\|WP_060544426.1\|2260186_2261173_+\|biotin/lipoyl-binding-protein	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	2.21869e-24
NZ_CP013195.1\|WP_025065279.1\|2265056_2265458_-\|DUF1573-domain-containing-protein	gnl\|CDD\|377880	pfam07610, DUF1573, Protein of unknown function (DUF1573). These hypothetical proteins, from bacteria such as Rhodopirellula baltica, Bacteroides thetaiotaomicron, and Porphyromonas gingivalis, share a region of conserved sequence towards their N-termini.	2.3993e-34
NZ_CP013195.1\|WP_036888427.1\|2267323_2271100_-\|DUF4795-domain-containing-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	6.15531e-08
NZ_CP013195.1\|WP_025065271.1\|2283340_2284741_-\|peptidylprolyl-isomerase	gnl\|CDD\|372650	pfam13616, Rotamase_3, PPIC-type PPIASE domain. Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline.	2.19405e-26

>NZ_CP013195.1|WP_025065275.1|2271463_2272858_-|asparagine--tRNA-ligase
MKRTKVVEVLRRTDFGSIVNVRGWVRTHRSSKAVDFIALNDGSTIKNVQVVVNPANFDESLLKQLTTGSCISVVGELVESQGQGQTSEIQCQSIELYGTCGSDYPMQKKGQSFEYMRQYAHLRLRTNTFGAVMRIRHNMAIAIHQYFHDHGFFYFHTPIITASDCEGAGEMFQVTTQNLYDLKKGEDGKISYADDFFGKMTSLTVSGQLEGELGATSLGQIYTFGPTFRAENSNTPRHLAEFWMVEPEVAFIDLPELMDLEEDFIKYCVRWALDNCKDDLEFLNKMIDKTLIDRLQGVVKESFVRLPYTEGIKILEEAVAKGHQFEFPIEWGMDLASEHERFLVEQHFKRPVIMTDYPKDIKAFYMKMNDDGKTVQGTDVLFPQIGEIIGGSVREENYDKLMGEIERRDIPMKDMWWYLDTRRYGTCPHGGFGLGFERLILFVTGMQNIRDVIPFPRTPKSADF
>NZ_CP013195.1|WP_036888427.1|2267323_2271100_-|DUF4795-domain-containing-protein
MKKIFSTLLMGAFFIASVGMFTSCKDYDDDINANANDIAALKTQLATLDAALKKAQDDIKAAAGNYATKADIKSLQDQIKKLVTADELQKAIDQCKTLIAGKADKTELDKLKTQVDAIDSRLNTLGTTLNTLDGAVKAAQANLAAQGYAFDKLGEALAGKADKAEVAKQIKDLKDQIALISGSAASVQTLAELKEKMQKLSDRIDEQAAQLNLLTVLVNRRLSMLVLQPAFYWEGLEGIELPAIYNTPVYDFEGQAKFSYKVMGASGLEDIKVTVDNRQPVATPKTITIMDGGVANYHVDPTSASFEDATFAFYTNEAEVNTRAGVATIATPKVAKFDNKVNVVKDGILTVPFKADFKRLNDYYAAWVANTSSDPTPANNDWGDPEDNVSYGNKLPFIALQANFPAKGKLDAYTITSDYGVLTPAKIKLRALADNDPDEVLDQHTFINSAPHVGEIGDNHLYTALYGVSGELYGQTHADALTHGVITMPATHQVVYNDKIDLKPFIETHADYITFARYGKSKHDKSLTAAELSALGLKYKFTLVDYRLGVETTSESAHMEQISDGVFAPRSVDASGKTKLGQVATREVIDREPLVRVDLVDDQNNVVLYGYIKIRIVASKVEDKKVEVNLSDIYMNCGDEGKMTWSQVENLILSQLGTNGLTKQEFERNYYLEVDNGSHAMPTQATGPLYTAGWQAVRYTAADVTKKILDSNAKTYGRVWYTPHDNATNPHAWDAQTNVLVWNISKNSPASNMTDAKILAFEKDYGVTYQSKGLNTKDVYTWVRFINKVDGTSVWVKLNFAPGKVHFAYGKVAGKDLHHWFKLNSAYVPGTESDLDVHANVPSPAEVGQIDLTNDKFTKDVREYWVNKKLLLTLESEKAKFSQFYTAAGTVKTTVDFEFTLPEKGVNSTVNAAADGTWVVSGASGSKWTLKLGDNNHTIYAVKQDGVALATPEKVATLNPNTDDGTYSILHYFGDEDNNKNAATDLLNKMGYYDNKGEDIHMKDYLTDNIDRTFTAYVKVTASKDPCYAPLLGNNLFNVRFMRPINVWPKNIEWTDALNSVETVKLQDLITIKDWRAMNVLVNGTYANGQVPYSFYGISSLSVIREQIRTDAPLAEATRKGAALTDPAQIMTLPSVENVPSLTSYTTSSGITTANYLKLINGYGTEVFNTAAHGISGFGWSRGNTATKNFGQITYTNNGGGAQIFHIYVPIAVKYNWGNVINEKTNASTSGVKKDLNYTQVVWATITVNKTTGSAKRN
>NZ_CP013195.1|WP_025065277.1|2266720_2267245_-|hypothetical-protein
MRKSAVYLLLLSFLVMAAVSSCGKKEKSVKQLEDEFLVQPKDSFNTTDTAEVKKLVDEFIYRLNRKDIKAAVSMLSFLDGDSIISLPKDLARRQARTLMNVQGVRYTVERLVFDQEKDNIVKVNIVLFEKKADDPRPNTTALYLKPIRRDGKWYLTTVDNMTDTNNLGGTKIQN
>NZ_CP013195.1|WP_025065278.1|2265555_2266707_-|OmpA-family-protein
MKSFKLLTAAALLVLGSTSAMAQATYTDKEGNEYQFKKHLFLNLEGGAQYTLGEAKFKDQISPNVQFGLGYQFCPAVALRLQANAWQSKGGWNGYTNRGKILPPFTADYKYKYVAPGLDLMFNLSNLFCGWNPNRVFNLTAFVGGGANIAWGNDEVNDLSKGIANVVPYNLEYLWDGTKVLPYGRGGLEASFRLSNAVKLVVEGNANILSDKYNSKKAGNADWYFNGLVGLRINLGKTYTKKEQAAPVAEEVVVAEEVAPAPAVEPAPAPVVEEKAEPLRRDIFFTINSYKVRASELQKVQEIVDYLNKTPEAKVAVTGYADAGTGNDKINDRIAAQRAASVVKMLKTQYGISADRITSDSKGARVQPFAENDKNRVSICIAE
>NZ_CP013195.1|WP_025065279.1|2265056_2265458_-|DUF1573-domain-containing-protein
MKQIYGLIVVSLLLISCGRGQKPVANAQTTVKFYMTDHDFGTYAERESKTCSFVFRNEGSKPLVISRAEADCGCTTVAFPKRPIAPGKKDSLIITYDGNGFTPGAYRKWITVQTNGADTAIMLTIRGRYEPID
>NZ_CP013195.1|WP_025065281.1|2263716_2264577_+|hypothetical-protein
MKTKQNYWWRTIASFLLVLFSMPLGHALMIMMERLMSPQAMHYAGFSMGLVGLVLVIIGVFAKGDTRQTLWGLFGGLLFWTGWVEFLFLYYARRYGVQPEIENGVVVTKPEYLIMPATFGMWIMIMTMYIFSTKNGCDFITWIQKVCFRDKRRIIAPQPMTRHTSIVTFMELNMMLWGLYLLLMFCYDKQFLGDHHPITFLVGLGCLVGSFFMFKRQLKLAAWGANIRMAIATVIIFWTPVEILGRINFFKEFWVEPERYAFQLSCILLLFIGLGIYLWLKGAKRK
>NZ_CP013195.1|WP_060544427.1|2262367_2263618_+|ABC-transporter-permease
MRKDSLLHHIREGIQDMCYIWAREMRSTVKDEGVLIFFILVPLLYPLLYSWIYNNQVVREVPVAVVDLSHSEQSRAFICQYDASPDVDVVYHCNSLDDAKLLIGKQVVKGVIYIPANFGTRINRREQATIGIYCDMSIMLNYKAIYQTATSVVGKMNAGIQLAQSRNFTKQDEQITIQPLDFAEVPIFNSTGGYADFIIPGVLMLILHQTLLLGIGLAAGTARENNRYSDLVPISRHYNGLFRIVLGKSSCYFMVYCVMAAYLALAVPRLFGFVQIIEGRDLLGLMVPYLLSTIFFGMMLSCTIRYRENVMLLVVFTSIPLLFLSGVSWPQSNIPGVWQAIACFFPSTFGIRGFVRLNTMGATLTDIRSEYQMLWLQVIIYFFATCAVYRYQIIQSRRHAVERLNAIKAKITRQLK
>NZ_CP013195.1|WP_081784145.1|2261272_2262361_+|ABC-transporter-permease
MVIFPIVVVVFFTSLMDEGQPTNMPVGVVDQDNTATTRALTRRLDAFQSTDIVAHYPNINEARNAIQRNEIYAFIYFPEGTTDKLLASRRPKISFYYSYASITSGALLFRDLKTIATLGSAAVGKAKLSAIGKTDEEIRTFLQPITIDLHPINNPEINYNVYLSTTLPPACLMLFIFLITAYSIGTELKFTRSKEWMRIAGNDIWIALTGKMLPQFLIFLTIIYAYLFYVFYVMGFPHAGGLGSILLLGLLTVLSAQGFGIFTFGLIPSLRMSMSVCSLWAALSFSIMGATFPLSAMGPEIEALAWLFPMRHYFMIYQINVFNGYSLLDAWPYVAALILFAALPLLVVYRIRKAMLEYVYIP
>NZ_CP013195.1|WP_060544426.1|2260186_2261173_+|biotin/lipoyl-binding-protein
MSAKSQHNNIMLAIIGFVAVVVIVAVIGFFTLGSTPEIIQGEVEVTEYRVSSKLPGRVVELRVKEGDFVHAGDTLAILEVPEVDAQKQVAEGTERAAAAVSRMADNGARREQIQGAYQLWQQALAASEIAKKSYNRVQNLYDEGVLSAQKRDEAFAAYKATQAQVLAAKSQYDMARNGSRAEEKQAAASQVTAARGAVNVVKSLLKETVQVATMEGEVSDVYPKVGELVGIGSPIMSISILKDMWGTFNVREDQLKGLKIGDTFTAFSPAFNKSLTMKIFYIKDQGSYAVWKATKTNGQYDLKTFEIKARPIQRFDGLRPGMSLIIKE
>NZ_CP013195.1|WP_025065283.1|2258688_2260179_+|TolC-family-protein
MKRIFAFLLLVSAILPMKAQRMLSLDSCRALALRNNKQLNISKLNRDVALNARKAVRTKYLPKMDAVGAYQFTSREISILNKRQKDALSNFGTSVGTKIGNDITPLITDLAQKGIITPGQASLFGNILNQVGTSLSNSLNEAGQKVRNAFRTDTRNIFVASVLVRQPIYMGGAITAANKIADISEQLADYSIDSKIQSTLYDIDQSYWLVVSLRHKQTLADSYLKLVQKLDDDVHKMIKEGVATRADGLKVDVKVNEAEMAKTQVDDGLVLAKMYLCQLCGIPMTDDIKLVDEDKENLNTAVSVDKGTVQTAIDNRPELKMLASTVAISKQGTRLARAAYLPQVAAVGGYTMSNPNVFNGFERKFSGYFHIGLMVRLPVWSWFEGRYKVNATKAMTNIAQMELSDAQEKVELQVNQSTFKVKEATKKLVMAVKNTERAEENLRCANLGFKEGVIQSTDVIAAQTAWLQAQTQKIDAEIEVKLSQVNLEKALGTLQY
>NZ_CP013195.1|WP_060544429.1|2274486_2275833_-|adenylosuccinate-lyase
MTLDLLTAISPIDGRYRGKTEPLADYFSEYALIRYRVRIEIEYFIALCELPLPQLAPLDKTLFDRLRDIYLNFGENEARRVKAIEEVTNHDVKAVEYFIKEAFDQIGGLEAYKEFVHFGLTSQDINNTSVPLSVKEALEHVFYPQVEALIAQLHAYADEWKDVPMLARTHGQPASPTRLGKEVMVFAYRLTEQLNLLKACKPTAKFGGATGNFNAHHVAYPDFDWKEFGNQFVREKLGLEREAYTTQISNYDHLGSVFDGMRRIYTIILDLDRDFWMYISMDYFKQKIKAGEVGSSAMPHKVNPIDFENSEGNLGIANAILQFLAQKLPVSRLQRDLTDSTVLRNVGVPMAHGLIAIQSTLKGLRKLILHEEKLHEDLHEAWAVVAEAIQTILRREGYPHPYEALKALTRTNQKMTKETIHAFVETLHVGDEVKKELLAITPYNYTGI
>NZ_CP013195.1|WP_025065274.1|2276675_2277818_-|OmpA-family-protein
MRKLLIVLAFAGISMSTMAQDADPVQKHSVATNSFWSNWFIQVGAEWNAWYSNQEHGLGLSRSPFKDFRSSPAAAVAIGKWFTPGLGLRTKLQGIWGKRVDDGNNFGNHNSYWILNEHALFNVSNLLGGYNPNRVWNFIPFAGAGIGRSMSANLYAMDLSVGILNEFRVSKKVAVNLELGWNRLEGDIDGNDRSNGHRGWDSHDNNFYAEVGLTFNLGKATWEKTPDVDAIKALSQSQIDALNAQLNDANAENARLKEMLANQKPAEDKTVKEFVTTPISVFFNLDKSVIASQKDLVNVRALAQYAKDNNSNLLVTGYADSATGTPQHNQGLSERRANTLADELVKMGVSRDNIKTVGKGGVDELSPISFNRRATVQVTE
>NZ_CP013195.1|WP_060544430.1|2277988_2279815_-|DNA-mismatch-repair-endonuclease-MutL
MSDVIQLLPDSVANQIAAGEVIQRPASVVKELVENAIDAGAKTIHVFVVDAGRTSIQVIDDGKGMSDTDARLSFERHATSKIRKADDLFNLHTMGFRGEALASIAAVAQVELRTRMETEDVGTHLNITGSVFQNQEPCSCPVGSNFLVENLFFNVPARRKFLKSNSTELSNILAAFDRIVLVNPQITFTLHSNGSELFHLKAGALRQRILDVFGKRLNQDLLPIHVDTTMCKINGFVGKPESAHKRGVQQFFFVNDRYMRHPYFNKAVAAAYDRLIPIGEQVPYFIYFEVNPEDIDVNIHPTKTEIKFENEQAVWQILSAAVREAIGVFTAIPTIDFDTQGKPDIPVFGSHSENVQMPKVDYNPQYNPFDNTRKTSKTQSSAEWEQLYEGLKTSQDHETAIFDAPELDASQESEKHRMLAEKSPVHYQYKGKYVMTTVKSGLMIIDQHRAHVRILYERYMQQVQAHRNSAQKLLFPEVIQMSVSESVIFHKVLPEMTSMGFELTDLGGNSYAINAIPADLEGVNAVLLVRDMIASAPEKDASAVESIYSSLALSMARNAAIPQGQVLSNDEMEELVNGLFACSNVNYTPDGKKVLCILKQQEIEHLLG
>NZ_CP013195.1|WP_025065273.1|2279817_2280111_-|hypothetical-protein
MNLFQVRKPRGFHHIYIYVDERKERLQKIEQCARRDLGMLNEECDRKNRIAGTFVAATHHLQKYRQKGAVGKKRMSFKGLILLLIVLLFVWFYLVEL
>NZ_CP013195.1|WP_060544431.1|2280131_2281841_-|hypothetical-protein
MTFKQKIIRYIDGHRVTLIAALCLFGLGIAQSHQAVRKRSRKVQDDRVHLVHSDQLSYDIYGPNPEAQIVKGWVHFSHSGAQLFCDSAYYYQESNSFRAFGHVRFYQGDTLSLTCDRAFYDGQQQLMEARRNVVLKHRRQTLYTDSLDYDRLYDYAYFREGGTLIDGKDKLVSDWGEYNTKTRDATFYYNVRLRSGKRLVTTDTLYYDTRKSLAHVVGPSKITSGTSVIHTEQGYFNTHSNKAQLFGRSTVVDKEKTIIGDSLYYDDKTGINRGFGNVVFIDKKNKTSLMCGKLYYNEKSGYGFATQRAVSKEFSRGDTLYAHADTMKLFTFHINTDSVYRKVHYYPHVRAYRTDVQAVCDSMVFNSQDSCMTMYKDPIVWNAGRQLLGEVIKAYMADSTIREAHVLGQALSVEQMPDTIHYNQIASRDMFAYFKNGVLRRNDAIGNVQSIYYTVDDKDSSLIGLNYLETDTMRMFLNEARKLEKIWTNKFEATLYPMTQIPPSKMKLNSFAWFNEIRPKDKNDIFIWRGKGLGANLQTVKRQQAPLQTIEKKTVIDTPAGKIAVPKLP
>NZ_CP013195.1|WP_025065272.1|2281837_2283274_-|peptidylprolyl-isomerase
MKTKNKILVGFAAFLLIVGMSANARKIGTYAASDTTRVAKDTPKIPATSVVDEVIWVVGDEPILKSDVEVMRLQGEGEGFKWNGDPDCAIPEQLAVQKLYLHQAAIDSISISESQISQGIDDQINYLISGIGSREKLEEYYKKSLTQIRQDMHDDFKNRMLIQEMQRKIVEDIAVSPADVRQYFKDLPADSVPFVPTEVEVEILMNHPRISQEEINRVKDELREYTDRVNKGETTFATIARLYSEDTNSARQGGELGYAGRGMLDPAFASVAFNLTDPKKISKIVETEFGYHIIQLIDKRGDKVNVRHILRKPRVSEEAIEKTKLRLDSIANDIRSGKFTFEDATAYLSDDKETKNNHGLMANMDRETGTRTSKFKMKDLPTDIARIVDTLKVGEISAPFQLITDKGKTACAIVKLKSRVESHKATITEDFQVMKNVVLAKQREKRLHDWVVDKIKHTYVWMNDRYKNCQFEYEGWVK
>NZ_CP013195.1|WP_025065271.1|2283340_2284741_-|peptidylprolyl-isomerase
MRITVLSAICLLCFVSGFAQSDPTLMTIGGQPVRRSEFAYLYHKNNAPGAVESLTVDEFLSKFIDYKLKVRAAREAHLDTLASVKRIHDADRGQVAISATIGDADRDAEARQVYAAMQHKVAQMGGWIRPAQILIRLNQRATKWQEIAAKRRVDSLYSVLQRGGDFASLAHRYSDDRESALNGGLMTWIRRGQTLKEFEDQAYSLQPGEVSRPFMSPLGWHIIRLWARQSTLPYDSLRASLVRMVDQRELRQQLVATEKRFATSRQTPTEKPIAESALTPDRRNLLREYEEGLLVCAIRDRVIGHRSTQNEQKLSAYFKKHKKQYRWEQPRFKGVAFHVKFKADAKKIKALLKRASFTTWETLIRTAFNGKSEDEIPFVVGYFKVGDNALIDKAIFKQPATIVRKAEFPIAEVYGKKLKAPKTLDDVRSQVLADYQDELETEWVSALRDKYPVEINRTVLATISHE
>NZ_CP013195.1|WP_025065270.1|2284748_2286233_-|IMP-dehydrogenase
MSSFVADKIEMDGLTFDDVLLIPAYSEVLPKTVTLETKFSRNISLKVPFVTAAMDTVTESSMAIAIAREGGIGVIHKNMSIDEQARQVAIVKRAENGMIYDPVTIRRGCTVQDALHMMQDYHIGGIPVVDDENHLVGIVTNRDLRFERRLDKSIDEVMTSENLITTHQQTDLTAAAQILQEYKIEKLPVVDAQNHLVGLITYKDITKAKDKPMACKDEKGRLRVAAGVGVTADTLARMQALVDAGADAIVIDTAHGHSKSVIEKLREAKSSFSKVDIVVGNVATGAAAKMLADNGADAVKVGIGPGSICTTRVVAGVGVPQLSAIYDVSCALKGIGVPLIADGGLRYSGDVVKALAAGGSCVMIGSLVAGTEESPGETIIFNGRKFKSYRGMGSLEAMEQKNGSKDRYFQGDTNDVKKLVPEGIAGRVPYKGTVQEVIYQLIGGLRSGMGYCGAASIERLHEARFVRITNAGVMESHPHDITITSEAPNYSRPE
>NZ_CP013195.1|WP_025065269.1|2286778_2287249_+|HU-family-DNA-binding-protein
MAILYRIHQDNRKNSVHKGKWYARAVMNGTVGIDQIAEVMQRNSTVKKSDILAVITELVETMQDFLQNSMRVKIKGLGSFKIGLKTKAANKPEDFNAAANVVGMRVNFQPELTISKDGVRRRALLNGAKVQETAHNTVNSRKKKKTEPEGSTPSHA
>NZ_CP013195.1|WP_156409648.1|2287352_2287457_+|smalltalk-protein
MNLTSWKLVIKVIVALATALLGVLGAQEMGDHEA

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Crispr_ID: NZ_CP013195_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013195_11

2386940-2387053

Unclear

Consensus_repeat	Method
ATTTTCTCCCGCAAGGAAATTTATTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP013195_11

>merge|NZ_CP013195|11|2386940-2387053|CRISPRCasFinder
ATTTTCTCCCGCAAGGAAATTTATTTTCTCCCGTATGCCCGTAAATTTTCTCCCGTATATAAATTTATTTTCTCCCGCAAAGAAATTTATTTCTTCTCGCAAAGAAATTTTCTT

>NZ_CP013195|11|10|2386940-2387053|CRISPRCasFinder
ATTTTCTCCCGCAAGGAAATTTATTT	TCTCCCGTATGCCCGTAA
ATTTTCTCCCGTATATAAATTTATTT	TCTCCCGCAAAGAAATTT
ATTTCTTCTCGCAAAGAAATTTTCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013195.1\|WP_025065206.1\|2388107_2389343_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NZ_CP013195.1\|WP_060544448.1\|2377354_2379172_+\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534
NZ_CP013195.1\|WP_025065201.1\|2376875_2377358_+\|Lrp/AsnC-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|183019
NZ_CP013195.1\|WP_159105364.1\|2392418_2392574_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065205.1\|2387208_2388096_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP013195.1\|WP_025065208.1\|2390489_2391416_-\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|350108
NZ_CP013195.1\|WP_082627507.1\|2371394_2373941_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341065
NZ_CP013195.1\|WP_036888386.1\|2391525_2392317_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP013195.1\|WP_172793009.1\|2384013_2386803_-\|beta-mannosidase	unknown	unknown	gnl\|CDD\|225789
NZ_CP013195.1\|WP_008564541.1\|2392808_2393639_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238084
NZ_CP013195.1\|WP_025065202.1\|2379179_2380214_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349943
NZ_CP013195.1\|WP_060544451.1\|2398964_2399912_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NZ_CP013195.1\|WP_060544449.1\|2382934_2383963_-\|DUF4434-domain-containing-protein	unknown	unknown	gnl\|CDD\|373094
NZ_CP013195.1\|WP_025065200.1\|2375059_2376220_-\|PCMD-domain-containing-protein	unknown	unknown	gnl\|CDD\|379071
NZ_CP013195.1\|WP_060544558.1\|2395179_2398200_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NZ_CP013195.1\|WP_025065204.1\|2381960_2382743_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133055
NZ_CP013195.1\|WP_060544450.1\|2393666_2395130_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|185760
NZ_CP013195.1\|WP_025065203.1\|2380689_2381964_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340851
NZ_CP013195.1\|WP_025065199.1\|2374314_2375070_-\|PorT-family-protein	unknown	unknown	gnl\|CDD\|372635
NZ_CP013195.1\|WP_036888384.1\|2389339_2390410_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223526

Protein	Function_ID	Function_description	E-value
NZ_CP013195.1\|WP_025065206.1\|2388107_2389343_-\|MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.85502e-56
NZ_CP013195.1\|WP_060544448.1\|2377354_2379172_+\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	3.07208e-107
NZ_CP013195.1\|WP_025065201.1\|2376875_2377358_+\|Lrp/AsnC-ligand-binding-domain-containing-protein	gnl\|CDD\|183019	PRK11179, PRK11179, DNA-binding transcriptional regulator AsnC; Provisional.	1.262e-40
NZ_CP013195.1\|WP_025065205.1\|2387208_2388096_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.95008e-61
NZ_CP013195.1\|WP_025065208.1\|2390489_2391416_-\|family-43-glycosylhydrolase	gnl\|CDD\|350108	cd08994, GH43_62_32_68_117_130-like, Glycosyl hydrolase families: GH43, GH62, GH32, GH68, GH117, CH130. Members of the glycosyl hydrolase families 32, 43, 62, 68, 117 and 130 (GH32, GH43, GH62, GH68, GH117, GH130) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases (EC 3.2.1.37), beta-xylanases (EC 3.2.1.8), alpha-L-arabinases (EC 3.2.1.99), and alpha-L-arabinofuranosidases (EC 3.2.1.55), using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32 comprises sucrose-6-phosphate hydrolases, invertases (EC 3.2.1.26), inulinases (EC 3.2.1.7), levanases (EC 3.2.1.65), eukaryotic fructosyltransferases, and bacterial fructanotransferases while GH68 consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10); beta-fructofuranosidase (EC 3.2.1.26); inulosucrase (EC 2.4.1.9), while GH68 consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10); beta-fructofuranosidase (EC 3.2.1.26); inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Members of this clan are retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) that catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. Structures of all families in the two clans manifest a funnel-shaped active site that comprises two subsites with a single route for access by ligands. Also included in this superfamily are GH117 enzymes that have exo-alpha-1,3-(3,6-anhydro)-l-galactosidase activity, removing terminal non-reducing alpha-1,3-linked 3,6-anhydro-l-galactose residues from their neoagarose substrate, and GH130 that are phosphorylases and hydrolases for beta-mannosides, involved in the bacterial utilization of mannans or N-linked glycans.	9.94167e-06
NZ_CP013195.1\|WP_082627507.1\|2371394_2373941_+\|hypothetical-protein	gnl\|CDD\|341065	cd09602, M1_APN, Peptidase M1 family including aminopeptidase N catalytic domain. This model represents the catalytic domain of bacterial and eukaryotic aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	0
NZ_CP013195.1\|WP_036888386.1\|2391525_2392317_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	4.49491e-81
NZ_CP013195.1\|WP_172793009.1\|2384013_2386803_-\|beta-mannosidase	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	1.83559e-31
NZ_CP013195.1\|WP_008564541.1\|2392808_2393639_-\|hypothetical-protein	gnl\|CDD\|238084	cd00146, PKD, polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.	0.00764416
NZ_CP013195.1\|WP_025065202.1\|2379179_2380214_+\|M28-family-peptidase	gnl\|CDD\|349943	cd08656, M28_like, M28 Zn-peptidase; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	5.68612e-118
NZ_CP013195.1\|WP_060544451.1\|2398964_2399912_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	3.29121e-39
NZ_CP013195.1\|WP_060544449.1\|2382934_2383963_-\|DUF4434-domain-containing-protein	gnl\|CDD\|373094	pfam14488, DUF4434, Domain of unknown function (DUF4434).	1.79006e-32
NZ_CP013195.1\|WP_025065200.1\|2375059_2376220_-\|PCMD-domain-containing-protein	gnl\|CDD\|379071	pfam13201, PCMD, Putative carbohydrate metabolism domain. This domain has been suggested to participate in carbohydrate metabolism. Structural evidence indicates that it might be a carbohydrate binding domain, with or without enzymatic activity. In particular, it has been hypothesized that it might act as a glycoside hydrolase.	5.57435e-87
NZ_CP013195.1\|WP_060544558.1\|2395179_2398200_-\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NZ_CP013195.1\|WP_025065204.1\|2381960_2382743_+\|glycosyltransferase	gnl\|CDD\|133055	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	6.59258e-62
NZ_CP013195.1\|WP_060544450.1\|2393666_2395130_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	4.78861e-35
NZ_CP013195.1\|WP_025065203.1\|2380689_2381964_+\|glycosyltransferase	gnl\|CDD\|340851	cd03825, GT4_WcaC-like, putative colanic acid biosynthesis glycosyl transferase WcaC and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. Escherichia coli WcaC has been predicted to function in colanic acid biosynthesis. WcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.	6.54227e-128
NZ_CP013195.1\|WP_025065199.1\|2374314_2375070_-\|PorT-family-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	6.31156e-08
NZ_CP013195.1\|WP_036888384.1\|2389339_2390410_-\|SIS-domain-containing-protein	gnl\|CDD\|223526	COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane].	3.11064e-38

>NZ_CP013195.1|WP_172793009.1|2384013_2386803_-|beta-mannosidase
MKKTISTIFALAALAVMPANASDEKQMLTDWELKSAVQVKQGGGMLSLSSYKTDRWIKAKVPSSVLGALVKAGVYPDPHFDLNDLKIPDASDDLNRRLGLSKYSYIKGTPNPFKHPYWFRTKFRIPANRKGRRAWLNFDGINYRADVWVNGKQVADHREMAGMFLRFKYDVTRFVSADRENVVAVKIYQVDNVGTPSPGYLFEPFGQGRGQGAEIFRDVTLKFMAGWDCSPVVRDRNMGMYQNVYLSYTDDVKIEHPYVVTDLQLPDTTNAFVTVSAELCNAGTTVRRGILRGTIDLEKEIDFCTYRKLMPGSMQTVVFEREVEVPAGRSITVSFTPKDYAQLHIRRPYLWWPNGYGMQYLHRLKLTFEADGRVSDTQTTTFGIRKITSTLKERDGEHGRIFWVNGKRIFSRGGFIQPDMLLDMNRKRMYDEARLLATAGVNMIANEDMPSPPEEVMETYDKYGLLMWEVFFQCWTSYPGTETFKNPTDTKLALRNMYDVVKRYRNHPSLVLWCMQIETIVREELYVPLRQYIRENDPTRPFIATSSHGWNVEETPYIKPDLPTGMTDENAPDYTWYPHPYYYEKVLEVKDQMFRNEMGVPAVSTLASMKKYIYDLGKGEKRGYYPLDKVWAYHDAWDSICCPPESYAYKPYDDAIRRQFGQPQSAEDYIRWAQYINAGSYRAMYEAANHRMWDITTGVMLWKLNATWPQVLWQIYDWFLNPNAGYYYAKKALEPLHIQMNEHNRMVAVINTQHRSHEELTADVRLYDFNMNVAWQKQQPLSIGEDRYQELFNIPQPDGITPVYFARLLLKDKNGRVVSENFYWLSADGKNDFRPITRMPKVELQLTSTTMTKDGDVIMKVNVKNPTDRLAFMHRLIITKGEGGEEVLPTFWSDNFLTIFPGETREVTATFARKDLNGTTPVLKLDRDQ
>NZ_CP013195.1|WP_060544449.1|2382934_2383963_-|DUF4434-domain-containing-protein
MKKYCLFIALLLPLLLGSCSNDDSQPGTNDADYITVDARKALTGTFVEFSGKDDWAPYQWNSLLEGMKKIGLNTVIVQFAAYNDNTWFDSQNTFTKNKNKYALARLLAAAELKHMEVYIGLYFNDEYWNNQTNAEWLKLHADRCISIAQEIQARFGNSPAFKGWYIPHEPEPYAYNSDAKVALFRNDFVNRISDRLHKLNGKPVSIAAFWNSDLSTPEQLQHFMAELAKANLQVIMLQDGVGVGHVTLERLAGYYQSAAKGLFKENTSYKGAFWTDLETFSSGSVPAPFARIKQQLTTELGVEKVTKAVSFQYYNDMCPTGPGGKTAGKLRQSYANYLRTLK
>NZ_CP013195.1|WP_025065204.1|2381960_2382743_+|glycosyltransferase
MIRFTIITVTFDAEAVFERTANSVLMQTYPHVEHVIIDGASRDRTIEMAHTYKVKSDEAKTGHTVTIFSEPDNGLYDAMNKGLFKASGDYICYLNAGDTLPSADTLDLIASSVGDGEALPGVLYGDTDVVDSEGRFLHHRRLAAPEQLTWRSFRQGMLVCHQAFYARTDLARNNPYDLRYHLSADVDWCIRIMKEAEKRHLPLRNVHAVVVDYLEGGMSVKNHKASLAERFRLMTHHYGLLSTIMMHGWFVVRAAFACQT
>NZ_CP013195.1|WP_025065203.1|2380689_2381964_+|glycosyltransferase
MRVLIVNTSEKTGGAAVASHRLMDALNNNGVKAKMLVRDKQTDQITVAQLPRSPLLKWHFLWERWCIFWRLHFTRDHLFEIDIANSGSDITSLPEFREADVIHLAWINQGMLSLKGIRKILDAGKPVVWTMHDVWPATAICHYTHGCPRFKTACQDCPLLPGGGSKTDLSHKIWSRKKRVLYHRNIHYVTCSEWLGGQARQSALLRGQSVTTIPNPIDTRIFCPKDQHEARRRAGLATDRLLILFVSQRVTDKRKGIDFLIDAVGKLTETHPELKDRLGVAILGGHSEAIADSLPLPVYSLGYVSDEKQLVDIYNSADVFVLPSLEDNLPNTIMESMACGVPCVGFRVGGIPEMIDHKTNGYVAEFKDATDLATGLFWTLCEADRDELRCRTVQKVQAQYSQTSVSHRYIEVYNQALAMKEFHL
>NZ_CP013195.1|WP_025065202.1|2379179_2380214_+|M28-family-peptidase
MKKRTIIMSSIIALLVVVALSYKPLMAHLDERNKSATVEEAEKPNPLGPAFNADSAYTFVKMQCDFGPRTMNSTAHDRCAAWIISQFKQYGCETEVQKATLKGYDGTALQSQNIIARFNPTAPVRVLLCAHWDARPWADNDPDSINWRKPILAANDGASGVAVMMEIARLISTDKQLKIGVDFICFDAEDWGTPRWANVEDNEDSWALGAQYFARNFRLNPRPRFGILLDMVGGQGAKFYQEAMSAQYAPEVLQKVWQAARQAGFGSYFPMSKGGMITDDHVPLNKIANIPTIDIIPYYPDCVQSSFGPTWHTVSDDLAHIDPQTLKAVGQTIIQVLYQLPMED
>NZ_CP013195.1|WP_060544448.1|2377354_2379172_+|membrane-dipeptidase
MTKTFDLNEVLTPIYSAYPEASHRPLIGLTANFADGNAMLRNHYYEQVVAAGGVPVIIPPVTDKDVIINTLDQIDGLLLTGGGDYNPLWAGEQPSPHLHGINAERDLAELLLTRLAYNRQIPMLGICRGIQTLALALGGKVMQDIAENRADELKKDSETHPLTNSKTQKLIKHSQEAENSEPTHTVKIEVDSTLYNIYRRHEIYVNSLHHQAVSDTGKRFRVTATAPDGTIEAIESIEFKSVLGVQWHPEWLEEDGMRVFKWLVDEANDFHSAKHLHAKILTLDTHCDTPMFFPQGIHFDQRDKRILVDLHKMTDGRQDAVTMVAYLPQPKAGESFSSKVDFDVSGPTEYANLIFDRIEEIVRNNNRYLSLARTPADLYENKRQERKSIVLGIENGLAIGCDLANVKHFAQRGVTYITLCHNGDNDICDSARGSQTHNGVSAFGEQVIREMNRCGILVDLSHGAEKSFYDALDISSTPIVCSHSNCKALCDVPRNLTDDQLRALAAKGGVAHTTLYGGFLRKDGAANITDAIAHLEHAIRIMGIDHVGLGTDFDGDGGIIGLADSSELIQFTLQLLRRRYSECDIAKIWGGNWLRVMTQAQQQKD
>NZ_CP013195.1|WP_025065201.1|2376875_2377358_+|Lrp/AsnC-ligand-binding-domain-containing-protein
MEKIDGLDRKILGILAHNARIPFKDVAAECKVSRAAIHQRVQHLMENGIIVGSGFEVDPKALGYATCTYVGMTLERGSMYKDVVNRLVEIPEIVECHFTTGSYMMLLKLYARDNEQLMDLLNNKLQTIPGVVSTETLISLEQSIKREIPINTDEKGNKQQ
>NZ_CP013195.1|WP_025065200.1|2375059_2376220_-|PCMD-domain-containing-protein
MKLYRIIPLAAFCCLLTSCFKDEPLNAECDIEEIAVHAAKPSETFFYLSDTLRPVLSNERNIVFNVRRKAEVGSYALTFKLTPGAVVQPANGSMQDFLKGNVTYTVTSEDGCWHRTYTIGFRPTLRTVNDTLHYDFENYYLQPEYKKFYMWHNELADGKWGNDWASGNPGFMLAAYQDPPENYPTIPEKDGYDGAAVCLTTRSTGSLGALFKKPIAAGNLFLGVFNVSESLTNPLKATYFGILLDKQPMKITGYYKYTPGQNFTGPDNKTIEGRTDQASIYGVFYRNRNDAGEAVYLDGSNVKTSPLIAGLADLKEIKPTTEWTPFEIEFQYTSDVDYDLLQNGGYNFTLVFSSSKDGDKFEGAVGSQLMIDKVRVICKEENKDDR
>NZ_CP013195.1|WP_025065199.1|2374314_2375070_-|PorT-family-protein
MIVKKLFAVLLIGTSAFAAQAKGIVDNATFNIRLGYSLGGTAPVGLPNTIRSLNSFHFRPNFLLGLDMNSTIDQRWGWLTGVRVERKGMYVDATVKNYHMGIEYGGQSLEGYYTGHEVTEEKQLMITVPVQATYHLCHNVSLRLGPYISFVMSKKFEGYAYDGYLRVNEPTGDKVVMGNTPSNRGSYDFSDRMRSLQCGLNFGADWRFYRQVGAFAELSWGLNGIHHSDFKTIEQTLYPIYGTIGLTYRIK
>NZ_CP013195.1|WP_082627507.1|2371394_2373941_+|hypothetical-protein
MKTNKIFLCILTALTLSMVMPMQAFNPTKEMNAKVEKGVSRALATCRAREISDVSYRISFQIPMRLTKKVTFIDTIRFNRNASTDLQIDFQGTLQTGQARVNGRLRPVQVNDEHIVVPGKWLRNGHNEVILAGTSENKSLNRNVDYLYTLFVPDHARSVFPCFDQPDLKAQFSLSLTVPEDWKVISNAPGKRLNVSANTDNKQVTYIFSQTEKIPTYLFSFTAGKFQVRKAQRDGRELEALYRETDPQKIAQLDKIFDQIALSLRWLEQYTGISYPFRKYGFAILPGYQFGGMEHPGAIQYRDRTLFLGPNPTPDEELKRLELIAHETAHMWFGDLVTMRWFDDVWTKEVFANFMATKIAREQFPEINHDLNFLKAYQTRAMSTDRTEGTHPIQQPLDNLNRAGLLYGYIIYHKAPVMMRKLEQRMGESAFRKGLQCYLKKFSYGNATWDLLIHILDSVKPEADLPAFSDVWVKQKGMPTIVCRYVDGKIKTDQTDPFGRGLVWPQQFVVGAVYRDSLSLITQNMLAGHCEALLANKPLALYPNYDGSGYGRFLSTDQAQTEALATWFMQPETPRFAMMMTLYENYLARNINSKYAFQYLFRGFPGERNDLIASTCIDYLRRISAEMPSYSTSDSRRIDAERNLWTYGYHHALPSVRKKILRVLGTSAVAPDVIDAIYEIWRTCADSSITVNDYTHMAYHLAVMRPAQWREILTVQRARLKNADAQREFDFVSRACNPDTLVQQQLFDSLLQRENRSVEPWAQAMLALLNAPTREPYSNRYLLPGLDALEEIQKTGDIFFPGSWLSALLAGHKSPEARQIVCQWIAAHPHYPTPLMNKLKENAYYLLR
>NZ_CP013195.1|WP_025065205.1|2387208_2388096_-|ROK-family-protein
MEKEIIIGVDLGGTKIMTGAIDQQGNVIGTPVKVATEGTRPKEVILDKIMASIRQVLRDNNLDPARLRGIGVGSTGPLDSDKGLILECPQLPTLHFFPLRDALSREFGLPVALNNDANCLILGEARFGAGRGKQRIAGFTLGTGIGCALVFDGKIWNGATGTAGEIWCSPYADGIIEDFISGHGVANIYRSVSEKEASSLDVFRLAEQGDQEALTTWESFGRHLAVPLAWTINLIDPETVILGGSIAAAYRYFGPAMEAQLRQNICPVPAKQTRVVLSMLGDNAGFVGAACLMLE
>NZ_CP013195.1|WP_025065206.1|2388107_2389343_-|MFS-transporter
MSNPMVRSEKKHSFLLVVTTLMYVIFGLLTSVIGVVIDRFQTEYNVSLAVAALLPLAFFLAYGLTSIPFGMLMDRRGAKLVLLTGTGLMAAGALLCYFSDNYVAVIVSVFLIGIGVTAVQIAGNPFIRVLDAPSRYTANLTMVIGIGALGYALSPLIVPVLQSNGCSWKTIYLLIAIVCIAILLIVAFAQFPEAKAGEEERLDLSRLWTLFRHPIVCTYGLGIFLYVGAEVGVSSYIITFMNEVHHLDNAQSFWGEASFLYRIFPSKTALIVALFWLLQAVGRMVASFLMRFVSERRIFIFHSACTVIALLCAIAGNETVSLVAFALTGYFTCVSFTSVFSAVINSFDRDHGMISGLLGTAIVGGALVGWLVGSVGNRWGMVAGMAVNVPAFLYVFALSVWGKGRLDVNDN
>NZ_CP013195.1|WP_036888384.1|2389339_2390410_-|SIS-domain-containing-protein
MNMTKNQFLTEIMEQPAAIGNIIAFYSGAEGMALLAKIKETIAQRAISRVIFTGMGSSFFISFAAANLFNQLGIHAMYINTSELLHYNLSLLDEPTLLVCSSQSGESYEIKEILEHLPATVFCAGIVNEEDSALAKKADVALLCKGGKEEMTSTKTYVVTSLAAYILGLYLTGKWNEAAIARLHALQRRFEDTLSSYEAWLDKGLNFLGDITTLQIIARGPAYSTASQSALMFKEATHIAATGILGGEFRHGPMEMVSQGFKSILFASEGKTLEQSLKMAEDITRFGGKVWLITNAKAALNRQSEHIVPVYIDEQDEFLFSIQSIIPVQLFIDAYAKRHGFEAGSFSRGAKVTMTE
>NZ_CP013195.1|WP_025065208.1|2390489_2391416_-|family-43-glycosylhydrolase
MRTKKSFIVLSLFAALSVNAFGQRNVYPQAADDQLVIQGDKCGWDAGTVHTFSVVEANKDGYKYWGYYGLDHYENDVHLRKAGLVRSNNLLDWVKYEGNPIIASNCRWPTVVMSNGKFYMFYAEYKGPNKDSRIMMAESDNGIDFDNKRVVVPYADGQQNQNPFIYFNKNDGFFYLFYYNGTEQAKSNQYWSVLVKKSKNVVDLPNQKPYTVVSSDKTLAAPSVAYYDGTYYLLVEEFSDDTHTKWVTNAFSSKEVDRGYKRVSNNPVLYKNDACAFQYVLDNHLYVTYSHCIDLSKGQWVLRMMKAK
>NZ_CP013195.1|WP_036888386.1|2391525_2392317_-|DeoR/GlpR-transcriptional-regulator
MEQQKGTTENVLFQEERLGKIIALLEKEGRLVTKDLVDTLGATPVTLRKDLLLLEKRGLLKRTHGGAVKVKQLYPGLALNEKEKINLEEKMRIVRKAAAFISEGDTIILDAGSTTSLLAKEIKGFKRLVVITNALNIATELSNTSIEVIMVGGSLLKKAATLVGPLADEALRRVSADKLFMGVDGVDFRVGLTTPDINEAKTSRVMMEAAGEVFLLVDSSKFGRRSLGVISDVKHIDKLITTKRFTDEEFRSLLTDKVEVYIV
>NZ_CP013195.1|WP_159105364.1|2392418_2392574_-|hypothetical-protein
MTISGGKDSYKHQPTQGTVGPFRSPLPSASGRTRQAIFHTLDDNGTHLSGR
>NZ_CP013195.1|WP_008564541.1|2392808_2393639_-|hypothetical-protein
MKKHIYPAAALITLLAACEPQQMETREMGPGPANARIETKATDPYNPVFTAKADRGYIFHWDMGNGQTIAPGANSATSYYPFAGTYTVGVTIYGEGAQETSAETTYKVAKTDPTIANKPVWKELTGGGAGRTWVYNTNPLTGSPDYCYQTTGDLVNYPDNWMPSASWGQCDRITPDINGEMTFDLDGGINFTYHHVAGDAGVKGTFILDTEKMTLTVKNPFILDHNAACTNSAAAATGVYQIKKLTDDELVLWQLQKAPTTPGSGEGWGWSFKRKP
>NZ_CP013195.1|WP_060544450.1|2393666_2395130_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKRYLTYMLSFALLGFTSCEGFLDTDVPSIDQHTFFSGEQTAYSALVGIYDPAGWMEYIQFLDWAIGDVVSDDATKGGGGDSDQPQIYDLEHFRATPEMATLSTVWEQNYEGINRANRLIEGLKDNTAVKEDVRKRFIAEARFMRGYYYFCLIKIFGAVPIVDHILAPSEYKGPRNTLEQCWTFVENDFKAAMEGLPHKKAMPATELGRATWGAAAAFLTKAYIFQAKWKPAEAQAKAIVASGDYDLQPNYGDLFTIATDNGIESVFDIQLKDFKMTQWGDENEGSMLEIYQRSRDDRNGGWGFDQPTQSLYDEFEPGDIRREWTIIKNGDVLWQGTADEETIYTNYDPVHNPDAPRIGYCKRKGTLPKSQRPDMTDAASLNVRVVRFADVLLWQAEAAVHNNSDWQTPLNRVRARVGLGESPYKADPLKAVYHERRVELALESHRYWDLVRTGRGSLMEGYTDSKRYFPIPQKEINLNPNLKQNPY
>NZ_CP013195.1|WP_060544558.1|2395179_2398200_-|TonB-dependent-receptor
MLFMLSFIPIYIIGQTGGERTIAGVVLDAETSEPLIGVTVRSPKSGTGVTTDLNGKFVIKVLPNDSTLSFSYIGYSPKHVSVVGKSRLSISLSEITNSVGEVVVVGYGTQKKEDLTGAISVVDMKEVNKLSASTLSHALQGQVAGVDVTSFSGSPGSGITVRVRGIGTLNDSDPLFVVDGMMVGDINFLNTGDIESVQVLKDASATAIYGSRGANGVIIITTKKGNTGKATINLSAYYGVQNVWKSNNMCDGPTWGMLRNEMSAGLGGGTLIEDTRTLPTVDYFDAILHKNAPVKNADLSISGGNEKGTYFLSLNGFSQDGIIKKTTFDRVTLRANGDFKANSWLTVGENITLIRTNHKGGIENDEWTSPIMTTYTRDPITPIRNEDGSFTKSTFSDIWNPLATIEYNNPKNTAYRVLANIYGEINFLKHFKFRSAYSTEYTNNEFSSYIPVYYVFSAQQNPNVNSLTNYTYSTYVRQFTNTLTYDKKLKEHTFSAMLGCETYAVTYRKLQASAKDVPSNDPRVMHIDNARTKDNAAAAQGMTTESKQASGFARLNYNFLERYLLTANVRMDGSSKFVRGHRWGTFPSVSVGWRITEEPFMKKVKVLNNLKLRLGWGQIGNEGSVDAYSYATFASAGSNYLFGGTFAPGFSFNSTGNPELKWEKTTTTNIGLDFGFFNSKLSGTIEFFNKVTSDMLLRVPVPGQTGISEPPFQNAGKMRNRGLEISLQYKNYDHPVGYSVGANFTTIQNRVLSLGANNAYIEGASFMNTVHLTRTAVGKPIAQFYGLKTDGLFQNWDEVHAQTAQKNVAPGDVRYKLVNKENLFSSENYTYLGSPLPKFSYSVNGAVSYKGFDLSVALQGVYGNKIYNGPSTYTRSTQNLTYNYSRDMTKRWRGEGTQTDARYPRLGGLDANNSILQSDRYLEDGSYLRIKMVQLGYTVPAALTAKAGIKSARVYLNAQNLYTFTKYTGLDPEIGMKGGEDPLDIGVDRGYYPMPRLYSIGLNVTF
>NZ_CP013195.1|WP_060544451.1|2398964_2399912_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MRIKKTIKTLAITAILALTTQQAAGQDLLARQAPVDRKMKTVDTLALQRIISRENAQSPAAELYNDWDNRYAHRATELPDSFRINLRHFHMPTPSRVITSNFGARWGRMHKGLDIKVYIGDTIRSAFAGKVRIVRYEAAGYGKYIVIRHPNGLETIYGHLSKQLVEENQEVRAGEVIGLGGNTGRSTGSHLHFETRLCGVALNPALLFDFRAQDVTADTYMFRRSSYERESAEANRLRGKIGNGGYSRDEVVGEMAQNDRGSSSLSGEKLFHKVEAGETLSSIAHKRGVTIDQLCKLNHLTRTSKISAGRMLRYS

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Crispr_ID: NZ_CP013195_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013195_12

2466919-2467117

Orphan

Consensus_repeat	Method
CTGTCGCTTGCAAGCGAAACGTTATTTTTCCCTTTTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013195_12

>merge|NZ_CP013195|12|2466919-2467117|PILER-CR
GTCGCTTGCAAGCGAAACGTTGTCTTTCCCTTTTTCTTCATTTCGCTTGTGAGCGAAACGTTGTTTTTCCTATTTTGAAGCTTTCGCTTGCAAGCGAAACGCTATTTTTGGAGTTTTGAACATTTCGCTCACAAGCGACGACCCTTTTTCTGCCATTTCCGCCTGTCGCTTGCAAGCGAAACATCATTTTCCCCTTTTT

>NZ_CP013195|12|2|2466919-2467117|PILER-CR
GTCGCTTGCAAGCGAAACGTTGTCTTTCCCTTTTTCT	TCATTTCGCTTGTGAGCGAAACGTTGTTTTTCCTATTTTGAAGCT
TTCGCTTGCAAGCGAAACGCTATTTTTGGAGTTTTGA	ACATTTCGCTCACAAGCGACGACCCTTTTTCTGCCATTTCCGCCTGTCGCTTG
CAAGCGAAACATCATTTTCCCCTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013195.1\|WP_025065251.1\|2465803_2466742_-\|PorP/SprF-family-type-IX-secretion-system-membrane-protein	unknown	unknown	gnl\|CDD\|274625
NZ_CP013195.1\|WP_025065247.1\|2460985_2462029_-\|gliding-motility-protein-GldN	unknown	unknown	gnl\|CDD\|274628
NZ_CP013195.1\|WP_025065246.1\|2457552_2459823_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|224119
NZ_CP013195.1\|WP_025066659.1\|2477436_2478126_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238194
NZ_CP013195.1\|WP_025065248.1\|2462051_2463602_-\|gliding-motility-protein-GldM	unknown	unknown	gnl\|CDD\|274624
NZ_CP013195.1\|WP_148299547.1\|2470780_2470948_-\|transposase	unknown	unknown	unknown
NZ_CP013195.1\|WP_051559074.1\|2464346_2465798_-\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	unknown	unknown	gnl\|CDD\|274629
NZ_CP013195.1\|WP_025066705.1\|2481822_2483493_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP013195.1\|WP_025065245.1\|2456494_2457004_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
NZ_CP013195.1\|WP_025066657.1\|2479682_2481317_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP013195.1\|WP_025066656.1\|2481377_2481599_-\|DUF4492-domain-containing-protein	unknown	unknown	gnl\|CDD\|373370
NZ_CP013195.1\|WP_172793012.1\|2468215_2468800_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_060544462.1\|2452830_2455719_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP013195.1\|WP_156409634.1\|2469165_2470731_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013195.1\|WP_025065249.1\|2463651_2464350_-\|gliding-motility-protein-GldL	unknown	unknown	gnl\|CDD\|274622
NZ_CP013195.1\|WP_060544463.1\|2460192_2460822_-\|porin-family-protein	unknown	unknown	gnl\|CDD\|379226
NZ_CP013195.1\|WP_004349202.1\|2467370_2467592_-\|DUF2795-domain-containing-protein	unknown	unknown	gnl\|CDD\|378655
NZ_CP013195.1\|WP_060544560.1\|2467665_2468205_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|376665
NZ_CP013195.1\|WP_025066658.1\|2478484_2479627_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_CP013195.1\|WP_025065244.1\|2455748_2456498_-\|copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|225684

Protein	Function_ID	Function_description	E-value
NZ_CP013195.1\|WP_025065251.1\|2465803_2466742_-\|PorP/SprF-family-type-IX-secretion-system-membrane-protein	gnl\|CDD\|274625	TIGR03519, bacteroidetes-specific_membrane_protein, type IX secretion system membrane protein, PorP/SprF family. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that have type IX secretion systems (T9SS) and exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.	5.16484e-57
NZ_CP013195.1\|WP_025065247.1\|2460985_2462029_-\|gliding-motility-protein-GldN	gnl\|CDD\|274628	TIGR03523, hypothetical_protein_P700755_05002, gliding motility associated protien GldN. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldN is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldN abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein also include those which are not believed to express the gliding phenotype, such as Prevotella intermedia and Porphyromonas gingivales.	3.56716e-81
NZ_CP013195.1\|WP_025065246.1\|2457552_2459823_-\|primosomal-protein-N'	gnl\|CDD\|224119	COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].	0
NZ_CP013195.1\|WP_025065248.1\|2462051_2463602_-\|gliding-motility-protein-GldM	gnl\|CDD\|274624	TIGR03517, GldM_gliding, gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.	6.10711e-169
NZ_CP013195.1\|WP_051559074.1\|2464346_2465798_-\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	gnl\|CDD\|274629	TIGR03525, lipoprotein_putative, gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.	2.47534e-94
NZ_CP013195.1\|WP_025066705.1\|2481822_2483493_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.44817e-144
NZ_CP013195.1\|WP_025065245.1\|2456494_2457004_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	3.72212e-64
NZ_CP013195.1\|WP_025066657.1\|2479682_2481317_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	1.31943e-155
NZ_CP013195.1\|WP_025066656.1\|2481377_2481599_-\|DUF4492-domain-containing-protein	gnl\|CDD\|373370	pfam14899, DUF4492, Domain of unknown function (DUF4492). This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length. The function of these proteins is unknown.	9.35307e-28
NZ_CP013195.1\|WP_025066659.1\|2477436_2478126_-\|peptidylprolyl-isomerase	gnl\|CDD\|238194	cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. .	1.05782e-53
NZ_CP013195.1\|WP_060544462.1\|2452830_2455719_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.11343e-43
NZ_CP013195.1\|WP_025065249.1\|2463651_2464350_-\|gliding-motility-protein-GldL	gnl\|CDD\|274622	TIGR03513, GldL_gliding, gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile [Cellular processes, Chemotaxis and motility].	9.38635e-41
NZ_CP013195.1\|WP_060544463.1\|2460192_2460822_-\|porin-family-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	2.78959e-15
NZ_CP013195.1\|WP_004349202.1\|2467370_2467592_-\|DUF2795-domain-containing-protein	gnl\|CDD\|378655	pfam11387, DUF2795, Protein of unknown function (DUF2795). This family of proteins has no known function.	3.17111e-13
NZ_CP013195.1\|WP_060544560.1\|2467665_2468205_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|376665	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase. Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12.	1.0497e-78
NZ_CP013195.1\|WP_025066658.1\|2478484_2479627_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	2.82437e-62
NZ_CP013195.1\|WP_025065244.1\|2455748_2456498_-\|copper-homeostasis-protein-CutC	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	1.73665e-93

>NZ_CP013195.1|WP_025065251.1|2465803_2466742_-|PorP/SprF-family-type-IX-secretion-system-membrane-protein
MWKRIGIIAMMSGLALVGARAQYDAAFSHYFDMEPSFNPAVVGKQGLLNVTGVYALGFAGVRHNPRSVYLAGDAPLPLAKGAHGAGLQFVDEKIGVYTHRRMALQYGYKRPWGGGTVSFGVQVGLLNEDLDASKADAEDRGDPALSGGKANGNGLDLGAGVYYLRGTWYVGVSGQHLNRPQVDLGEKAEIRIKQTYYLIAGYNIRLRNPFLKIKTSLLVRGDGQAYRADVTGRLVYQREKKMFYGGVGCSPTNSVTALVGGKFHGVVVGYSYELYTSAIPAGNGSHELFVGYQCPLDFSNKAKNKHKSVRIL
>NZ_CP013195.1|WP_051559074.1|2464346_2465798_-|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme
MRIKGMITLGALSLTLLLSGCFGSRASSSASRGGEVVGVSGRVMPEPTPYGMIRINRGYLRMGLETQDSLWGNDLSQKDVSVDGFWMDETEVTNAKYKQFVMWVRDSILRTRLADPAYGGDETYMITEDREGNPVPPRVNWKKPLPRKPNEDEQRAFDSMYETNPVTGEKLLDYRQLNFRYEIYDYASAALRRNRIRPEERNLNTDIAVNPDEVVMISKDTAYVDEDGRIVSETIDRPLTGPWDFLNTYIVNVYPDTTCWVNDFKNSDNEIYLRNYFSNPAYNDYPVVGVTWEQANAFCAWRTEFLLKGLGPEARYVQRYRLPTEAEWEYAARGKEGKEFPWEIQDVKTGDGCFYANFKPDRGNYTKDGNLITSKVGVYSSNSNGLYDMAGNVAEWTSTVYTASGVDAMNDLNPQLTYNAAKEDPYRLKKKSVRGGSWKDPETFIRSAWRSWEYQNQPRSYIGFRCVRSLANTVSIKPKKGKK
>NZ_CP013195.1|WP_025065249.1|2463651_2464350_-|gliding-motility-protein-GldL
MSSYSKINVIYRLQKWMDSVPGQTFLNYAYSWGASIVILGTLFKLTHLPGADLMLFIGMGTEVCVFFISAFDRPFDKTADGRDIPVHVTDEYLKGSEAVDEKAFPASQKIMSQATERCLSQQQETSPELVEATANYVAELQRLTEMLSKVSEQSARLTRDSEEMDNLNRTLTGICKVYEMQLKGASQQIGTIDRINEQSKKMAEHIEQLNSIYHRMIEAMTVNMRAATSHNP
>NZ_CP013195.1|WP_025065248.1|2462051_2463602_-|gliding-motility-protein-GldM
MAIKKRPISPRQKMINLMYVVLMAMLALNVSTEVLNGFSIVEDSLNRTTANATRENKAIYGDFESQLKANPEKVKAWFAKATQVREMSDSLFDFVQSLKEEIVREADGKDADVLNIRNKDDLEAANRVMLAPGTGQGKRLFQAINAYRKHILSMLTDPQQKVIIAENLTTRLPRKAHTMGRNWQEYMFEDMPVAAAVTLLSKLQSDIRYAEGEVLHTLATEIDIKDIRVNKLQAFVIPESRTVVSGDQFAARIVMAAVDTTRQPEIYIGGRRMNLPGGLYRFATSGIGEHSFGGVIAMQTPNGGFIRRPFVQKYTVVAPSATVSADLMNVLYAGFDNPLSVSIPGVPLSNVSIRVAGSAFREAGKGHFVVHPTVIGRDVTITVLSTQDNRSREVGRFTFHVRKLPDPTAYIQIGTDRFRGGALYKGALVGAQGIKAAIDDGILDIDFRVTGFESVFFDNMGNAVPMTSNGALFSDRQRDALRRLARGRRFYISHITAVGPDGITRRLPASMEVIVK
>NZ_CP013195.1|WP_025065247.1|2460985_2462029_-|gliding-motility-protein-GldN
MKRFIVIVLITSLVQALSAQPEARQREQQTARKQRNERLTTRAQISFPVAETMPEDVVWRRDIYREIRLDDEPNAGLYYPVEPVGGQMNLFCYLFKLVLSGNVPAYEYRLDGNEVFADSSRVKPLAFLDNYHIFYERVGKGIHLDNSDIPSREVKGYYIKESTFYDQASATFHTQVLALCPIMEREDDFGSTPTKYPLFWIRYADLAPFLVNRTLMASSLNNAVVMTLDDFFTAHHYRGKIYKTNNLLGKTLAQSYPTDSAMAKAQKRIEDELQTFEQRMWGDPQRKAMADSIAKNNASAKGKSTVKRGRRVRSTTATVKASRRNSGSASSTTTASPARVSVRRERH
>NZ_CP013195.1|WP_060544463.1|2460192_2460822_-|porin-family-protein
MKKITIVFTFVAALIIGVSIPAQAQIQFGVKGGLNVSHMSLSNDLLKASNRTGFFFGPTMKFTLPIVGIGVDASALYDLRETELSNDKMSETSSFEKTVKQQQIVVPVNMRYHIGLSKLAAVLLYAGPQFGFNVGNKDQSIDGKRVDWRFKNSNFSINVGAGVMLLNHLQVSANYNIACGKTGEATIDNTIDAVKARNHAWQVAAAYYF
>NZ_CP013195.1|WP_025065246.1|2457552_2459823_-|primosomal-protein-N'
MNFADVILPLPLDGVFTYGVPDVLVPQVRFGVRVVVPLGRSKTYTALVVRVHQEKPDFEVRDVFSVLDERPMLLDRQYKLWQWIADYYMSSLGDIFKAALPSGLKAEDGYRPRTETYITLAEAFRHEQHLHSAMNSLTRAAKQQQAFCEFLSITHWDSLRGDTPTEGITEVTRDELMNVAHCTSAVVKALINRGFLRTYEREVGRLNDAGEPHLDKIKRLGEAQQTAFNSVLFAFMKKSVVLLHGVTSSGKTEIYIHLIAKALQEHKQVLYLLPEIALTVQIMSRLQRVFGNRLGIYHSKYSDAERVEIWRKQLSNNPYDIILGARSAVFLPFQNLGLVIVDEEHETSFKQQEPAPRYHARSAAIVLAQLYGAKTLLGTATPAAETYYNAKQGKYGLVTLTTRYKDMEMPEIEIVDIKDLARRKMMTGPFSPRLLAALRESLAEGQQAILFQNRRGFAPMIECRVCGWVPHCVNCDVALTLHKNMNQLTCHYCGFTYQVPTVCPNCGSTELRGRGYGTEKIEDQIRELLPEARVARMDLDTTRTRNAYERIIGEFSSGKTNLLIGTQMVSKGLDFDRVRVVGILQADALLNYPDFRAYEHAFAMMAQVSGRAGRKGKRGHVILQTKTPDLPLIRQVVAGDYVAFHAALMDERRMFHYPPFFRLIYIVMRHTKDELVETAAQELGSRLRQGFGDRVLGPDKPVVARVKTLNIRKIVLKLESGIDLSQVRRYLRETQAALLCDRRYGALQIYYDVDPL
>NZ_CP013195.1|WP_025065245.1|2456494_2457004_-|gamma-carbonic-anhydrase-family-protein
MALIKTVKNKRPTWGKRCYFAENATIVGDICMGDDCSVWFGAVLRADVDNITIGSRVNIQDGACVHETHGYSVMIEDDVSIGHNATVHGCTLRRGSLIGMGAVVLDRADVGAGSIVAAGAVVAQGTHIGPGEIWGGIPAKLIKRAAEGQSETFAQHYMDIKKDYEEDVK
>NZ_CP013195.1|WP_025065244.1|2455748_2456498_-|copper-homeostasis-protein-CutC
MMRNDFKFEVCANGVESCLAAQKGGADRVELCAGIPEGGTTPSYGEIKVARRVLDRTRLHVIIRPRGGDFVYSPLEIERMEEDIDVAHKLGVDGVVFGCLTLDGGIDLDGNARLMEHTHGMSATFHRAFDRCKDPSAALEQLIELGFDRILTSGQQPTAEQGIPLLTALNIQSAGRITLLAGCGVNESNIRSIFETTDIHEFHFSARVNVPGAMTYSNPDVYMGAKGVDENMREITSEDRVRNTIAQLL
>NZ_CP013195.1|WP_060544462.1|2452830_2455719_-|insulinase-family-protein
MKRQITLITFCFIASLLCAQHRNPLQVIEKQLSNGMQVWLNEDHTRPQVFGAVVVKAGSKDSPNTGIAHYFEHIMFKGTDKIGTVDYLSEKPWLDSIATKYDELANTKDAIRRSQIQKDINRLSRKAGEYAIPNEFETLIQKFGGTGLNAYTSTDETVYYNFFLPHYIDQWCELNSERLISPVFRLFQGELEAVYEEKNRASDDVFRSAMDDIQRHIFAGTPYAYPIIGSTESIKNPQLSAMSEFYQRYYVAGNMGLVLCGDIDADAIMPLLERTFGRIRPGKAPISAPTHLPSFTNHDVFHVKIPVPVVKIAGYVLHAPTNRDPDYVPFTLALALLSNSEGTGLLDSLSNSHRVMMATAGQMSFKDVAVAYFGYVPKLPFGSRKTADRLCRKQIEKLKHGQFTDQALEVIKQNSEKKRQLRLEGIDTRRFEMINAMSHGLTWSDYLQQDQDLMRVTKTDIVRVTNRYFNGDYMQVVKRYGSNRKEKVAQPDYRPVTPKHAGTQSSYAKALEQQSVKAVMPRLPDFDHDVKTVQMAPLVTFYSVPNPVNDLFKLQLIYHKGRREDNRLTAVADYLSLIGTYDLPLHRFRKALGELGASIDFEAGNDAFTITLSGFDRHLVPSLALLRQLMTRAKADPRMMKDLIHSARIDQKTFFKVPVNITNAVVNRVIYGSRSPYLTQLTASQLKKMDGEALINIFKSLQTNELSIAYSGRLNVDSVTEAVRRHVDLRQVTVPHSFTHRPLMTYDRPAVYFYDVPTARQTTVCTYLSLPAMPTEQARARFALWSQYFGSGMSSILFQDIREFRALAYAVNGQRIMPSIIAHRDDPTGYLAYLGTQSDKTMQAIGVLDSLFSAMPLRESGMAAARQGVINRINNDYPDFRDMARDIALWRTAGYSAAPDKALSELLPHLSLSDITSFYTNYVRKVPRVLIVVGNKRMLDMQKLATFGPVIELKKQLIVGHR
>NZ_CP013195.1|WP_004349202.1|2467370_2467592_-|DUF2795-domain-containing-protein
MYWTLELASKLEDAPWPATKDELIDYAIRSGAPLEVLENLQEIEDEGDVYDSIEDIWPDYPTKEDFLFNEDEY
>NZ_CP013195.1|WP_060544560.1|2467665_2468205_-|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MKVYTKGGDDGMTSLIGGRRVPKCDWQIEACGAVDELNAHLGLLAAWLADAEVKAFVEQLQRDLFVVGSYLAADPPGSRHCEGETIDEGDVRKLEDEIDRITLQIPPQNSFVLPGGCREAALAHVCRTVCRRAERRIVKLGEVVDISPVILRYMNRLSDYLFILARETNFKVCRIEKKW
>NZ_CP013195.1|WP_172793012.1|2468215_2468800_-|hypothetical-protein
MNMLIRAGCRILRWPRSYGFGVQSPFAYRFVRFVVNEKWPYYAYGALYDAEPIADKTMLKRCRLCLRLANHLQPKRWWMSLPEAATYATYVGAGCRKTEVIRDCARRMVSESAASQVLMMALTADWEELFDRFAAVATQHSVLLVTDIDATKESRRAWRRLVDDDRTGVSFDLLDCGIVFFDLKMHKRNYKINY
>NZ_CP013195.1|WP_156409634.1|2469165_2470731_-|hypothetical-protein
MIRTRQIFAMAALTLLAACTNDEINNKDKTSGSEAQHVTFTAVDDAVSTRTMVVPGSHSKGGGAKIVWSAGDKIWVKDAGNTWKQSAAGTFSSDKKHGVFLLTGTFQDGCAIHYTGINGSAGNKVTIQTSQTQATPNDFTHLGESGDCGIGTGKGKGSAFRFTIDHRSAYLCFLPRTSNKFVKRSRLFKIEVSSEDAIAGDYDFSGNNLSAAPIDHSSNKIELSTGGTTGFELTNANTDMAKNASYMVIAPGSHKLTIRYWLRNKVDNPNGTIEGTVTKYVDVNCKPGKICDITALLDPQDFTTSKYYMWDAKQHYWYGKESSQPKVSTIISTDNPKSAAADPDRWYNTGSNAWATNTANTCATANQILWYVQKGAPHWDATELWSTLDHLYKGGMWLKTKKVLGQENGKTNLQMYEKAPDGIDYRAINALQPEYIHSNSSIIQHRPLKAEIGNYFYLPAAGFYSGGQLQHVSRYGYYWSSTRPIFTGYGEAQAYCMAFVSNSISFGRTNRTFGIMIDLKY
>NZ_CP013195.1|WP_148299547.1|2470780_2470948_-|transposase
MKKHESYVKPEVSVCLSQTEYLLTSASGDNKDLEPGGSYGDAKRGWFDEEDEEEF
>NZ_CP013195.1|WP_025066659.1|2477436_2478126_-|peptidylprolyl-isomerase
MKKIIYALLLLLLLTPAPAGAAQDEPRREVLLKTDKGDILLALYNETPRHRDNFIRLVKSGYYNGVLFHRVISNFMIQCGDSTTRHATPGTEVGAYSPDYTVPAEIVYPKFFHRRGVLAAARESDDVNPERASSSSQFYIVYGHRFTEDGLDQLQARLDKTTNGKIVLAPETREIYKTLGGTPHLDGQYTVFGEVLSGMDVIKEIQSVETDAKDRPLEDVRIVEATVVK
>NZ_CP013195.1|WP_025066658.1|2478484_2479627_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MTYEFYQQYWWFLVSLLGALLVFLMFVQGANSMIFNLGRTDIERRMLINSTGRKWELTFTTLVTFGGAFFASFPLFYSTSFGGAYWLWMVILFSFVLQAVSYEFQNKLGNVFGAKTFQIFLVINGILGPLLLGGAVATFFDGSNFIIDKSNITRLGQPVISRWANASNGLDALLDVWNLVFGLAVFFLARVLGTLYLVNNVDDPQIRSRSRRQLLINAGIFLVLFLTFLGRTLLKDGYAYEPATGVISMQPQKYFHNLIEMWYLLLVLVLGVVMLLFAVVRTALDKAYIKGIWPGSIGVVLVVLVLLLCAGWNHTAYYPSNADLQSSLTIANSCSSEFTLRAMSVVSLFIPFVLGYIAYVWYLMDRKKIDAKEIISEDAY
>NZ_CP013195.1|WP_025066657.1|2479682_2481317_-|cytochrome-ubiquinol-oxidase-subunit-I
MINHLLLDVTSGTIDWSRGQFALTAIYHWLFVPLTLGLAVIMGIAETCYYRTKKQFWKDVARFWQKLFGINFAMGVATGLILEFEFGTNWSNYSWFVGDIFGAPLAIEGIIAFFMESTFVAVMFFGWNKVSSGFHLASTWLTGLGATISAWWILVANSWMQYPVGCDFNPDTMRNEMISFADVALSPFAIDKFCHTVTSSWIIGAVFTVAVSCYYLLRRREQKLAVESIKIGTVVGLIASVLTAITGDHSAYTVAQVQPMKLAAMEALYNGGTDQGLTAVAWVNPVEQGDYKNQEEVSLRVSVPYALSLLATHSLHGFVPGVNDLIKGYTREDGTRELSVAEKLVRGKMAVKALMAYREAKKAGQSEAAAKYLAVVKPNMKYFGYGYVTSADQLVPFIPLCFWSFRVMVGLGALFILFFAVTLFVVYRKDIARYRWLLVSGLVMLPLAYMASEAGWIVAEMGRQPWTIQDMLPTWIAVSDLESSYVALTFFIFLALFTALLIVEIRILCKQIKKGPEYGDTVDTSGEAAKNLGTHELTTDKLSN
>NZ_CP013195.1|WP_025066656.1|2481377_2481599_-|DUF4492-domain-containing-protein
MNKNSFVYRVFDLYYDGFRRMKLGKSLWAIILIKLFIMFAILKFFFFPNFLKEKAPKGNEADYVSKELINRTK
>NZ_CP013195.1|WP_025066705.1|2481822_2483493_-|group-II-intron-reverse-transcriptase/maturase
MNENKTSCAPADNQLTLWDSIDWTKAELAVRKLQARIVKAQKDGRHNKVKALQWTLTHSFYAKALAVKRVTSNGGGNTPGVDMETWDKPETKMQAINDLRRRGYQPKPLRRVHIKKSNGKLRPLGIPTMKDRAMQALYLMALEPVSETTADTRSYGFRKERRCMDAVMQCHNILRKGYSPEWILEGDIKGCFDHISHEWLLANIPMDKAMLRKWLKCGYIFNKQMFPTEEGTPQGGIISPTLANMALDGLQKVLAERYKRRTIKGKHYSPMVNLVRYADDFIITCENRETLENEIKPLVAEFMAERGLTLSEEKTVITNVRDGFDFLGFNIRKYGNEILTKPTKKAEKRFMENIRKVIKGNKGCRQESLIRMLNAKIRGWGAYYQHGATRDSFHRIDHQIFLSLWQWAKRRHSKKGKRWIKDRYWHNIRGNSWTFAAKFKKSNGKEDQLTLLTLTSSFPFLQYTQIKGDMNPFDVDCRLYFNQRMKSKMLVSLKGRKSLLHLWEKQGRKCPICGEPINTHKAWNVMPTVQNGRKCNLLVHDKCFKLSRKSNDNNKK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013195_2	2.18\|852545\|36\|NZ_CP013195\|PILER-CR,CRISPRCasFinder,CRT	852545-852580	36	NZ_CP013195.1	519014-519049	0	1.0

1. spacer 2.18|852545|36|NZ_CP013195|PILER-CR,CRISPRCasFinder,CRT matches to position: 519014-519049, mismatch: 0, identity: 1.0

caccttggcctgactctgtgcgagcttgtcaaacac	CRISPR spacer
caccttggcctgactctgtgcgagcttgtcaaacac	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013195_2	2.17\|852481\|35\|NZ_CP013195\|PILER-CR,CRISPRCasFinder,CRT	852481-852515	35	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	870023-870057	8	0.771

1. spacer 2.17|852481|35|NZ_CP013195|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.771

tcgatagatacatctcccttgccggcagctttcag	CRISPR spacer
gaaacggttacatcgcccttaccggcagctttcag	Protospacer
  .*..* ****** *****.**************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

428442 : 436852

Bifidobacterium_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021584442.1\|428442_429336_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	5.0e-17	33.5
WP_036888840.1\|429361_430069_+	hypothetical protein	NA	NA	NA	NA
WP_025066189.1\|430100_431447_+	lytic transglycosylase domain-containing protein	A0A0S2SXN2	Bacillus_phage	8.9e-10	37.7
WP_060544132.1\|431473_433756_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	2.5e-12	36.3
WP_025066188.1\|434129_434882_-	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	1.3e-58	46.2
WP_025066187.1\|434889_435573_-	DUF4840 domain-containing protein	NA	NA	NA	NA
WP_025066186.1\|435650_436244_-	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	2.7e-43	51.1
WP_025066185.1\|436318_436852_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	5.8e-13	33.3

DBSCAN-SWA_2

683483 : 802091

109

unidentified_phage(15.0%)

tail,integrase,tRNA

attL 671915:671932|attR 803169:803182

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
671915:671932	attL	NA	NA	NA	NA
WP_025066633.1\|683483_684098_+\|tail	tail fiber domain-containing protein	A0A1V0DY07	Yersinia_phage	1.2e-09	37.1
671915:671932	attL	NA	NA	NA	NA
WP_082627458.1\|684103_685912_+	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	6.3e-27	34.8
WP_060544173.1\|685995_687999_-	YWFCY domain-containing protein	NA	NA	NA	NA
WP_025066586.1\|688068_689349_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_025066585.1\|689345_689759_-	hypothetical protein	NA	NA	NA	NA
WP_004353766.1\|690326_691118_+	AAA family ATPase	NA	NA	NA	NA
WP_025066583.1\|691114_691636_+	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_025066582.1\|691632_692070_+	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_025066581.1\|692073_692853_+	hypothetical protein	NA	NA	NA	NA
WP_009011627.1\|693005_693308_+	DUF4134 domain-containing protein	NA	NA	NA	NA
WP_060544174.1\|693312_693648_+	DUF4133 domain-containing protein	NA	NA	NA	NA
WP_025066580.1\|693644_696158_+	TraG family conjugative transposon ATPase	NA	NA	NA	NA
WP_004351265.1\|696376_696991_+	DUF4141 domain-containing protein	NA	NA	NA	NA
WP_009347087.1\|697038_698076_+	conjugative transposon protein TraJ	NA	NA	NA	NA
WP_025066655.1\|698099_698723_+	conjugative transposon protein TraK	NA	NA	NA	NA
WP_025066654.1\|698727_699030_+	hypothetical protein	NA	NA	NA	NA
WP_060544175.1\|699022_700291_+	conjugative transposon protein TraM	NA	NA	NA	NA
WP_025066653.1\|700340_701291_+	conjugative transposon protein TraN	NA	NA	NA	NA
WP_025066652.1\|701284_701875_+	conjugal transfer protein TraO	NA	NA	NA	NA
WP_025066651.1\|701887_702373_+	DUF3872 domain-containing protein	NA	NA	NA	NA
WP_025066650.1\|702359_702869_+	lysozyme	A0A1B1IHU6	Skeletonema_virus	1.3e-06	32.0
WP_027952921.1\|702986_703706_+	NYN domain-containing protein	NA	NA	NA	NA
WP_060544176.1\|703866_704091_-	hypothetical protein	NA	NA	NA	NA
WP_004343225.1\|704095_704350_-	hypothetical protein	NA	NA	NA	NA
WP_025066721.1\|704725_705751_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	1.1e-07	26.4
WP_060544177.1\|705737_706748_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_025066716.1\|706737_707979_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_082627462.1\|708109_709219_-	PcfJ domain-containing protein	NA	NA	NA	NA
WP_025066594.1\|709223_709634_-	PcfK-like family protein	NA	NA	NA	NA
WP_172792992.1\|709640_710267_-	hypothetical protein	NA	NA	NA	NA
WP_025066595.1\|710454_710802_-	hypothetical protein	NA	NA	NA	NA
WP_060544178.1\|710941_711406_-	DUF1896 domain-containing protein	NA	NA	NA	NA
WP_004343236.1\|711443_712667_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	8.8e-33	32.4
WP_025066596.1\|713676_714636_+	SPFH domain-containing protein	NA	NA	NA	NA
WP_025066597.1\|714692_714890_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_025066598.1\|714903_716142_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_025066599.1\|716253_717735_+\|tRNA	proline--tRNA ligase	A0A1V0SJ28	Klosneuvirus	1.2e-89	35.5
WP_025066339.1\|718215_718428_+	hypothetical protein	NA	NA	NA	NA
WP_060544179.1\|718455_720036_+	hypothetical protein	NA	NA	NA	NA
WP_060544180.1\|720550_721120_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	4.9e-18	30.9
WP_025066337.1\|721116_721593_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_025066336.1\|721589_722168_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_025066335.1\|722171_722798_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_025066334.1\|723076_724102_+	transcription antitermination factor NusB	NA	NA	NA	NA
WP_025066333.1\|724111_724441_+	preprotein translocase subunit YajC	NA	NA	NA	NA
WP_025066332.1\|724444_725431_+	YbbR-like domain-containing protein	NA	NA	NA	NA
WP_025066331.1\|725427_725997_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_025066330.1\|726008_726440_+	DUF5606 domain-containg protein	NA	NA	NA	NA
WP_060544181.1\|726678_727389_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.8e-17	28.6
WP_025066329.1\|727581_730956_-	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_060544182.1\|731092_732496_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_025066328.1\|732492_733695_-	DUF4105 domain-containing protein	NA	NA	NA	NA
WP_060544183.1\|733786_735079_+	hypothetical protein	NA	NA	NA	NA
WP_025066326.1\|735078_735735_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_060544184.1\|735735_737010_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_025066325.1\|737120_739262_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_025066324.1\|739454_739868_-	histidinol phosphate phosphatase	NA	NA	NA	NA
WP_025066323.1\|740080_741592_-	hypothetical protein	NA	NA	NA	NA
WP_025066322.1\|741614_741827_-	hypothetical protein	NA	NA	NA	NA
WP_025066588.1\|742743_743973_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	2.3e-28	34.3
WP_060544531.1\|744038_745376_+\|integrase	site-specific integrase	A0A249XTI5	Mycobacterium_phage	3.8e-05	36.0
WP_004353888.1\|745784_746108_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_025066590.1\|746107_746482_+	hypothetical protein	NA	NA	NA	NA
WP_060544185.1\|746485_748552_+	AAA family ATPase	NA	NA	NA	NA
WP_025066591.1\|748539_748848_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_025066592.1\|749063_749669_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_060544186.1\|749661_750669_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_156409644.1\|750752_751976_-	hypothetical protein	NA	NA	NA	NA
750717:750734	attR	NA	NA	NA	NA
WP_025066705.1\|751977_753648_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	5.3e-137	48.9
750717:750734	attR	NA	NA	NA	NA
WP_156409607.1\|753797_753938_-	hypothetical protein	NA	NA	NA	NA
WP_060544187.1\|759640_761704_-	type IA DNA topoisomerase	A0A076FM50	Aureococcus_anophage	1.1e-19	24.8
WP_060544188.1\|761725_763129_-	DUF3945 domain-containing protein	NA	NA	NA	NA
WP_025066536.1\|763602_764307_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_036857245.1\|764307_765540_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	D2TEZ5	Emiliania_huxleyi_virus	3.7e-39	30.6
WP_025068456.1\|765986_767279_+	radical SAM protein	NA	NA	NA	NA
WP_025066538.1\|767326_769609_+	TonB-dependent receptor	NA	NA	NA	NA
WP_082627464.1\|769592_771809_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	7.9e-40	29.8
WP_025066539.1\|771828_772308_+	hypothetical protein	NA	NA	NA	NA
WP_060544190.1\|772987_774994_-	YWFCY domain-containing protein	NA	NA	NA	NA
WP_025066456.1\|775063_776344_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_025066457.1\|776340_776721_-	hypothetical protein	NA	NA	NA	NA
WP_025066458.1\|777310_778114_+	conjugal transfer protein TraA	NA	NA	NA	NA
WP_060544191.1\|778100_778619_+	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_025066460.1\|778623_779394_+	hypothetical protein	NA	NA	NA	NA
WP_004342556.1\|779527_779827_+	DUF4134 domain-containing protein	NA	NA	NA	NA
WP_060544192.1\|779831_780167_+	DUF4133 domain-containing protein	NA	NA	NA	NA
WP_025066462.1\|780576_781545_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	M4QMR9	Micromonas_pusilla_virus	1.5e-51	39.9
WP_060544193.1\|781531_783208_+	AlwI family type II restriction endonuclease	A0A2K5B262	Erysipelothrix_phage	7.1e-17	27.1
WP_051559338.1\|783830_784163_+	hypothetical protein	NA	NA	NA	NA
WP_009011633.1\|784438_784912_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_025066464.1\|785036_786029_+	conjugative transposon protein TraM	NA	NA	NA	NA
WP_060544532.1\|786076_787027_+	conjugative transposon protein TraN	NA	NA	NA	NA
WP_025066465.1\|787020_787614_+	conjugal transfer protein TraO	NA	NA	NA	NA
WP_025066466.1\|787626_788091_+	DUF3872 domain-containing protein	NA	NA	NA	NA
WP_025066467.1\|788102_788609_+	lysozyme	A0A2I7RLY1	Vibrio_phage	4.2e-05	32.8
WP_006045095.1\|788697_789300_+	glutamine amidotransferase	NA	NA	NA	NA
WP_025066468.1\|789388_789850_-	histidinol phosphate phosphatase	NA	NA	NA	NA
WP_025066716.1\|790687_791929_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_060544177.1\|791918_792929_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_025066721.1\|792915_793941_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	1.1e-07	26.4
WP_082627467.1\|795151_795460_-	hypothetical protein	NA	NA	NA	NA
WP_060544194.1\|795507_796539_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	1.5e-09	25.2
WP_025066691.1\|796522_797536_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_025066692.1\|797528_798752_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_082627468.1\|798876_799089_-	PcfK-like family protein	NA	NA	NA	NA
WP_060544533.1\|799094_799526_-	hypothetical protein	NA	NA	NA	NA
WP_025066415.1\|799878_800226_-	hypothetical protein	NA	NA	NA	NA
WP_025066416.1\|800365_800833_-	DUF1896 domain-containing protein	NA	NA	NA	NA
WP_025066417.1\|800858_802091_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	7.5e-32	38.9
803169:803182	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1210053 : 1262848

unidentified_phage(33.33%)

integrase

attL 1255632:1255646|attR 1272918:1272932

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060544263.1\|1210053_1211337_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.7e-18	32.9
WP_025065554.1\|1211349_1212603_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	2.3e-28	29.5
WP_060544264.1\|1212860_1217393_-	N-6 DNA methylase	A0A248SL14	Klebsiella_phage	7.4e-85	31.2
WP_025068261.1\|1217499_1219584_-	type IA DNA topoisomerase	A0A2P1ELA0	Moumouvirus	2.0e-24	24.7
WP_036856270.1\|1219605_1221006_-	DUF3945 domain-containing protein	NA	NA	NA	NA
WP_159105370.1\|1221462_1223760_+	TonB-dependent receptor	NA	NA	NA	NA
WP_051132058.1\|1223781_1225020_+	hypothetical protein	NA	NA	NA	NA
WP_106042318.1\|1225202_1225592_+	hypothetical protein	NA	NA	NA	NA
WP_029216625.1\|1225715_1226312_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_004362761.1\|1226382_1226997_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_025065558.1\|1227024_1228779_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.5e-29	24.6
WP_036856265.1\|1228800_1230528_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.1e-40	29.9
WP_025065559.1\|1230534_1232895_+	MMPL family transporter	NA	NA	NA	NA
WP_025065560.1\|1232940_1233720_+	outer membrane lipoprotein-sorting protein	NA	NA	NA	NA
WP_025065561.1\|1233722_1235027_+	hypothetical protein	NA	NA	NA	NA
WP_025065562.1\|1235048_1237052_-	YWFCY domain-containing protein	NA	NA	NA	NA
WP_036856262.1\|1237128_1238409_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_025065563.1\|1238405_1238819_-	hypothetical protein	NA	NA	NA	NA
WP_025065564.1\|1239411_1240215_+	ParA family protein	NA	NA	NA	NA
WP_025065565.1\|1240201_1240720_+	DUF3408 domain-containing protein	NA	NA	NA	NA
WP_025065566.1\|1240716_1241493_+	hypothetical protein	NA	NA	NA	NA
WP_004365152.1\|1241649_1241952_+	DUF4134 domain-containing protein	NA	NA	NA	NA
WP_025065567.1\|1241955_1242291_+	DUF4133 domain-containing protein	NA	NA	NA	NA
WP_060544265.1\|1242287_1244801_+	TraG family conjugative transposon ATPase	NA	NA	NA	NA
WP_025066731.1\|1245041_1245656_+	DUF4141 domain-containing protein	NA	NA	NA	NA
WP_060544539.1\|1245708_1246746_+	conjugative transposon protein TraJ	NA	NA	NA	NA
WP_044126051.1\|1246769_1247393_+	conjugative transposon protein TraK	NA	NA	NA	NA
WP_021583847.1\|1247397_1247700_+	hypothetical protein	NA	NA	NA	NA
WP_025066693.1\|1247692_1248964_+	conjugative transposon protein TraM	NA	NA	NA	NA
WP_060544267.1\|1249012_1249963_+	conjugative transposon protein TraN	NA	NA	NA	NA
WP_025066643.1\|1249956_1250547_+	conjugal transfer protein TraO	NA	NA	NA	NA
WP_025066642.1\|1250559_1251027_+	DUF3872 domain-containing protein	NA	NA	NA	NA
WP_025066641.1\|1251023_1251533_+	lysozyme	NA	NA	NA	NA
WP_004380960.1\|1251604_1252381_+	hypothetical protein	NA	NA	NA	NA
WP_004380961.1\|1252380_1253424_+	methionine adenosyltransferase	A0A2K5B278	Erysipelothrix_phage	2.1e-67	40.9
WP_025066640.1\|1253534_1253753_-	hypothetical protein	NA	NA	NA	NA
WP_025066639.1\|1253757_1254012_-	hypothetical protein	NA	NA	NA	NA
WP_025066638.1\|1254035_1255307_-	PcfJ domain-containing protein	NA	NA	NA	NA
WP_025066637.1\|1255324_1255855_-	antirestriction protein ArdA	NA	NA	NA	NA
1255632:1255646	attL	NA	NA	NA	NA
WP_082627483.1\|1255867_1256161_-	hypothetical protein	NA	NA	NA	NA
WP_025066692.1\|1256252_1257476_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_025066691.1\|1257468_1258482_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_060544194.1\|1258465_1259497_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	1.5e-09	25.2
WP_082627485.1\|1259568_1259802_-	PcfK-like family protein	NA	NA	NA	NA
WP_004374602.1\|1259807_1260239_-	hypothetical protein	NA	NA	NA	NA
WP_025065724.1\|1260597_1260948_-	hypothetical protein	NA	NA	NA	NA
WP_025065723.1\|1261088_1261556_-	DUF1896 domain-containing protein	NA	NA	NA	NA
WP_036857440.1\|1261561_1262848_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.9e-33	41.8
1272918:1272932	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP013195.1|WP_025066594.1|709223_709634_-|PcfK-like-family-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP013195.1|WP_025066594.1|709223_709634_-|PcfK-like-family-protein

709223_709634_-

136 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|40	0.5428571428571428	1	0.9929078014184397

683483-802091

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013195

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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