CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013049	Mycobacteroides abscessus strain NOV0213 chromosome, complete genome	3 crisprs	csa3,cas3,DEDDh,cas4,WYL	0	4	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013049_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013049_1

4360772-4360869

Orphan

Consensus_repeat	Method
TCGTTGATGGCACTGGTGTGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013049_1

>merge|NZ_CP013049|1|4360772-4360869|CRISPRCasFinder
TCGTTGATGGCACTGGTGTGGGCGCCACCGCCGACAGCCGTGCTGCCGCCAACAGAACCCGAACCACCCAGGGCATCGTTGATGGCACTGGTGTGAGC

>NZ_CP013049|1|1|4360772-4360869|CRISPRCasFinder
TCGTTGATGGCACTGGTGTGGGC	GCCACCGCCGACAGCCGTGCTGCCGCCAACAGAACCCGAACCACCCAGGGCA
TCGTTGATGGCACTGGTGTGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013049.1\|WP_005085687.1\|4353345_4354281_+\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274648
NZ_CP013049.1\|WP_005112261.1\|4351857_4352709_-\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|223856
NZ_CP013049.1\|WP_005095144.1\|4364630_4365554_+\|M56-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320685
NZ_CP013049.1\|WP_005112263.1\|4354307_4354775_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP013049.1\|WP_005095148.1\|4366030_4366627_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_005080038.1\|4362686_4363376_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|372611
NZ_CP013049.1\|WP_005085677.1\|4357100_4358594_-\|isoniazid-inducible-protein-iniC	unknown	unknown	gnl\|CDD\|223771
NZ_CP013049.1\|WP_005085675.1\|4358590_4360474_-\|dynamin-like-GTPase-family-protein	unknown	unknown	gnl\|CDD\|223771
NZ_CP013049.1\|WP_030142800.1\|4374184_4375495_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181738
NZ_CP013049.1\|WP_005086454.1\|4355766_4356420_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_005112262.1\|4352724_4353204_-\|thiol:disulfide-interchange-protein	unknown	unknown	gnl\|CDD\|239309
NZ_CP013049.1\|WP_005112275.1\|4366808_4368626_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|223520
NZ_CP013049.1\|WP_005086456.1\|4356439_4357096_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138206.1\|4368718_4371088_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP013049.1\|WP_005112272.1\|4363372_4364254_+\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|223856
NZ_CP013049.1\|WP_005112267.1\|4355302_4355689_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_005112273.1\|4365634_4366018_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP013049.1\|WP_005112277.1\|4371246_4374177_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|223325
NZ_CP013049.1\|WP_005086452.1\|4354832_4355309_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226406
NZ_CP013049.1\|WP_005080036.1\|4364271_4364634_+\|penicillinase-repressor	unknown	unknown	gnl\|CDD\|367747

Protein	Function_ID	Function_description	E-value
NZ_CP013049.1\|WP_005085687.1\|4353345_4354281_+\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	1.53287e-109
NZ_CP013049.1\|WP_005112261.1\|4351857_4352709_-\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	3.03046e-17
NZ_CP013049.1\|WP_005095144.1\|4364630_4365554_+\|M56-family-metallopeptidase	gnl\|CDD\|320685	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	1.31489e-31
NZ_CP013049.1\|WP_005112263.1\|4354307_4354775_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	0.0016386
NZ_CP013049.1\|WP_005080038.1\|4362686_4363376_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	1.33413e-32
NZ_CP013049.1\|WP_005085677.1\|4357100_4358594_-\|isoniazid-inducible-protein-iniC	gnl\|CDD\|223771	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only].	3.80887e-11
NZ_CP013049.1\|WP_005085675.1\|4358590_4360474_-\|dynamin-like-GTPase-family-protein	gnl\|CDD\|223771	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only].	3.95646e-21
NZ_CP013049.1\|WP_030142800.1\|4374184_4375495_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181738	PRK09265, PRK09265, aminotransferase AlaT; Validated.	0
NZ_CP013049.1\|WP_005112262.1\|4352724_4353204_-\|thiol:disulfide-interchange-protein	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	8.23958e-34
NZ_CP013049.1\|WP_005112275.1\|4366808_4368626_+\|Hsp70-family-protein	gnl\|CDD\|223520	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones].	1.13771e-31
NZ_CP013049.1\|WP_005112272.1\|4363372_4364254_+\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	2.1225e-23
NZ_CP013049.1\|WP_005086452.1\|4354832_4355309_+\|hypothetical-protein	gnl\|CDD\|226406	COG3889, COG3889, Predicted solute binding protein [General function prediction only].	1.19196e-06
NZ_CP013049.1\|WP_005112273.1\|4365634_4366018_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.02368e-13
NZ_CP013049.1\|WP_005112277.1\|4371246_4374177_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	1.14753e-88
NZ_CP013049.1\|WP_057138206.1\|4368718_4371088_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	7.45695e-16
NZ_CP013049.1\|WP_005080036.1\|4364271_4364634_+\|penicillinase-repressor	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.1003e-26

>NZ_CP013049.1|WP_005085675.1|4358590_4360474_-|dynamin-like-GTPase-family-protein
MSDTAQDGQQQLALINELLGHVRKIAGENDRGDLIDRLDRADQLLVDRPLRVVVAGQLKQGKSQLVNSLLNMPVARVGDDETTSVTTVIGYGEQPSAALVVAPAEQYDGGGLAGEPEIIPIPVADIGKDLKRAPQAQGREVLRVEVKVASPILKSGLCLVDTPGVGGFGQPHLSSTLGLLPDADVMLMVSDLSSEFTEPELVFIQQALDLCPVAAIVNTKTDLYPHWRAVVAANSAHLQRAKIAVPAIAVSSALRSHALQLNDKELNTESNFPALVTFLSNAIADQQASTRQQAIAEIGSASEHLTLTLEAELSALQDPQSRDELTSDLERRKREAEEALAHTALWQQVLGDGITDVSTDVEHDLQSRFRRILQRTEEVIDRTDPTKNWAEVGAKLEQAVANSVGNNFVWAHQRAMHLAAQVAETFAIDGLESIKMPRLRASEMGADLSDLKSLSKLEAKQIKLGHKAITGLRGSYGGVIMFGMLTSVAGLGMFNLISLGAGAMLGKKTYNEDMENRMLRIRGEAKTNVRRFLDDVSFVVLKESRDRLRLVQRQLRDHFREIANQTTRSLNESLQAAIASARLEAEDRDARTNEVERQLHILRQVNSHVEGLQPADEQVGRRATRDV
>NZ_CP013049.1|WP_005085677.1|4357100_4358594_-|isoniazid-inducible-protein-iniC
MSSVVQARVIISDAMRAYQNDSRYLRVAEPHDELRRIAARLDEPIRVAIAGTLNAGKSTLVNALVGEDIAPTDATEATRIVAWFRHGAAPRVTANLFSGVRQDIPIRREGGLSFELDRLDPASVADLDVNWPAPELNEITLIDTPGTSSLSTDVSERSLALLVPEDGVPRVDAVIFLLRSLNAADIGLLTQIGKLVGGERGGAVGVVGVVSRADEIGVGRLDAMLSAREVAARFAGEMERTGICQAVVPVAGLLALTARTLRQAEFVALQRLAELDPQVLAKALLSVDRFVREDDSLPVDAQTRAALLHRFGMFGIRISVAVMRVGVTDATGLAEELLERSGLVELHNIIANQFGQRAGILKSHTALLSARRVLTTYPVHGGRRVIDDIDPLLADTHAFDELRLLAELSSRSTTLTEHETMLIRRLLGSFGTDAAARLGLDETRSDPRRAALDAVGRWRARAEHPLNDPFTSRLCLAAVRSAEGILTQLSAHDRPAY
>NZ_CP013049.1|WP_005086456.1|4356439_4357096_-|hypothetical-protein
MMMRLFVATLALVAGFSTATAAAEPTPSPAGPASKPVPAGVWISPAEIPMNSDYHWSAVSPTATGRAAFLSMRLCGSPSADVLPPASAIATQAASGIAASVVQAAGQWPEGNTEGASAFQSGIRSQLNYCPGVGDVISVDLRPAPSWYGFAATLLVGKERDNPTSEVHIYNVVPPESGTVSELAVTVPRTGREPSPWKPVDDATVLRALAQPLCKGSC
>NZ_CP013049.1|WP_005086454.1|4355766_4356420_-|hypothetical-protein
MRGWLRTISALVVIAGLGAAVPAAAEPKSLPDSVWINPRDIPLDRASHWAPLSRGAAPVDRPAFWSANLCFSLGESLPQSPESASATVSSDESGWTAVEVVAHWPGEAAVTDQYASTVYRSLRGRLDHCFNAIGAQVSVTELTNGHAATVTLPAQGGKQPQYHLYVVQPPGTGTVAELTVTNAITGAAGASWVEADDHQVLRDLAAPICRTAKSTAC
>NZ_CP013049.1|WP_005112267.1|4355302_4355689_-|hypothetical-protein
MHGRGVLSGVCGIATIIAMAVLLTPVSIQVGTGETAQTVTCGMPVGPRLSRTAELDKISSAQNQSTNYHDQCAAKLDTRRMWAIPIGVLSFVIALCAAGHLWKENTPSSSPAQTHHGLSGPPGMRMAH
>NZ_CP013049.1|WP_005086452.1|4354832_4355309_+|hypothetical-protein
MFNQQYHDQEPDQPNPWYKQPAVLIALAGAGVAVVAVIAALIITRSDDKPAPAGNTSSVSSTTSSTPADSGGGGHEGHGGHSGGGNTTVTETQTVPESPTSQDTTTTEPTTTTTTTTEPTTTTTQPTTTTTQPTTSTRPSVVVPIPGGGNIQVPVGGQ
>NZ_CP013049.1|WP_005112263.1|4354307_4354775_+|hypothetical-protein
MSQTPKPPEDESYFSEMIEESEKPAPWYRTGPAIVGTIAAIIAIVAVLMTIVLSTDKRVVRDNTPLTSTPSVSSTAPTVQLTSPSESSTAVPTATEAPSEPAAPVQTSEPTYYETPTSTIYRYPIPAIPSPPPIPPIPAIPQIPQIPQIPQIPGL
>NZ_CP013049.1|WP_005085687.1|4353345_4354281_+|LLM-class-F420-dependent-oxidoreductase
MDFRVFVEPQQGATYSDQLRVAQAAEELGFSAFFRSDHYLAMGGADGLPGPTDAWVTLGAIARETTAIRLGTLVTSATFRHPGPLAVTVAQVDEMSSGRVDFGLGAGWFSEEHEAYAIPFPSLGERFDRLEEQLEILTGLWTTPTGDTYSYAGKHYTVTDSPALPKPVQEPHPPIVIGGLGVKRTPALAARFATEFNLPFQPVDVITDQYARVAHAVEAAGRPADSMTYSAAFALCIGDTDADIARRAANIGREVEEITENSPLAGTPDAVAEKLSIYVDAGVQRVYVQLLDIRDLDHLEFFASTVIPQFS
>NZ_CP013049.1|WP_005112262.1|4352724_4353204_-|thiol:disulfide-interchange-protein
MAVLALALSVGLSGCSGTEKGETSSAPSSRLLNFTAQTIDGADFAGSSLAGKKAVLWFWAPWCPTCQKEAPDLQKAATAHSDVTFVGVAAQDQVPAMRDFVTKYGLTFIQLADTDAKVWALYDVTHQPAFAFLGAEGKAEVVKSPLSGPELDKKIGQLH
>NZ_CP013049.1|WP_005112261.1|4351857_4352709_-|cytochrome-c-biogenesis-protein-CcdA
MIDTAALTFALGAGLVAALNPCGFAFLPGYLGLVIAGSDGTASRMTAIARAATATVAMAGGFLTVFGVFGLVVSPVVASAGRYMPFATVVIGVVLVALSIWLLCGRELTLVLPRVSGGAPTASLLSMFGYGLTYAVASLSCTVGPFLAVISTTFKQGSIVSGVLAFIAYGAGMAVTVGVAALAVALLGNSVQATMRKVLPYVGRIAGVIVLLTGLYVAYYGYYEIRLNFGDGSADDPVINAAGTVQAWLVGVVDATGVWPLTGGIALIVAVAAASSYAVRKGR
>NZ_CP013049.1|WP_005080038.1|4362686_4363376_+|thioredoxin-domain-containing-protein
MRRSENGKRDIWIAGILGVVIVALATYLLVDHRSQSTASTDSPTVTGHSSSLARLRPLDPLALGPVDAPVVLIIYSDYRCPFCAKFSRDTEPQLIERYVNTGKLRIEWRDLPIFGTQSVQAAKAGRAAAEQGRFWEFNRAVYRHAPDRGHAELTDKILLDRAREAEVPDLARFQTAVESDRLLPAVQQDIQEAVAIGAASTPVFLINDQPVVGAQPLDVFISVIEQAQR
>NZ_CP013049.1|WP_005112272.1|4363372_4364254_+|cytochrome-c-biogenesis-protein-CcdA
MIDVGVLGALLGGVLTLVSPCSALLLPSFFAYSFDRTGLLLRSTGLFYLGMLTVLAPLGAGVGAIGALLTEYRSQVTTTGGLLMTTLGVAIIAGIGFRVGPAARLSARLDLSSGLSVLLLGTVYALAGFCSGPILGSVLTVAAIGSSPIYGALLMSLYSLGMAAPLFVLAFAWGKLGLSQRRWIRGRELRIGRFRTHSTNLVSGGMFIAIGVFFLATDGTAALGGLTGSDTQYDVQARLQSLTAGLPNAAVALGIACAAFVVVLMRLLRARITAAGDARKRSDSTREDADDRR
>NZ_CP013049.1|WP_005080036.1|4364271_4364634_+|penicillinase-repressor
MRDMFGLGEREATIMELLWSAAEPVTVRDVLDRLERPLAYTTVMTVLDNLHNKGHVTREKVGRAFQYRAAETREAAAARMVREVLAASGDAEGVLLHFAGATSPEESTVLRRILRRGGLA
>NZ_CP013049.1|WP_005095144.1|4364630_4365554_+|M56-family-metallopeptidase
MTVALVLMAGAALIGVAGPACLGPTVRPSLLPAAALATWLGALLAFLVLTTLSATLLLFPHVLDTSGVRTLVGGCLSGTVPHSSFGTLVQLGISLLPLTILARVAVVAIRSLRSARRRRARHFWMLRAASCRSGEVHWIDDPRPIAYSLGGARGAVVATHGVRHLGERQCAAVIEHEMAHIRGRHHAAVLCADIAAAALPMLPLMRRAPAMVRLMVELAADDAAARVHGPPTVHAALLAMSQSAVAVPGVLHMSSESVAVRLLWLRTQGATGRTPMGRTRLMLGFALLPTTLAGSAVVALFRAYCTL
>NZ_CP013049.1|WP_005112273.1|4365634_4366018_+|DoxX-family-protein
MIPTGARLVFGVIFLLEGTQKVFGWWSGSPTGSGHPEPFLNWPYWWAGVFELVLGSLLTVGLRTRLAAVLAAGMMAYAYFFEHLQVHWEPMQNGGAFAATFCWGLLLLAVTANDTRLSLDRVLARRA
>NZ_CP013049.1|WP_005095148.1|4366030_4366627_-|hypothetical-protein
MGNNLLDFVMALVRDQDMAAQYAANPERVIADAHLDGVQPSDVSALIPVVSESMPSISQLAAHPVASGLAHATIPADNIWASGAAVSAFDSPFTAPTHDPSLDAGLHAATDAVSDLSPRQDAITVPDQSTAPTDSAVAAIDQFQAPPQSTDGGFEPQQFGADAGVTGSADPGLHDPFFDQGDLGHHPGIGHDPGIDHF
>NZ_CP013049.1|WP_005112275.1|4366808_4368626_+|Hsp70-family-protein
MANALGLSIGATQLVATPDDPQSQPVVRSSILTLHEDGPPEVGVPSQPGLTLTGFVGRVGDPVGIVAADGSVHRAEWALTEAMRVLIADAVSSANFTAPPVLSASIPAHWSPQTVSTLRDAIDRVPAFAPGGRQLKLIPDARAALEALAAGPGTPDRGVVVVCDLGGSGSSITLADAARGFQQIGQTIRFADFSGQQIDQMLLTQVLTDLNQDPEGTTSVGALTRLRDQCRLAKERLSGDTATSVPVQLPGITTDVRLTRAELEGHLRGPLSNLINAIQDTVERNGIHPANITAVASVGGGASIPLVTQQLSERMRVPVITAPQPQLAAARGVALLATRPDLPPQDATAMRPVEQPPGDATMMRPVPTGTGTFAAPVAAAANEEPELAWSQDDSAPDLAPLQETGYQSGYTVDLDDEYQGPTEATTARPELRFSHGPYADEDDYDDYPPLPWYRRPLVWFIAAAAVAGIAFTGMMVSLTSSESPAPATTTPSVNVVPSTGDAPAEPPPSPEPPPPPQTHTVTQSVQPPPPSPEPPPPPPPTTTTTTTPPTTTTTTTTTTTTTTTTTTTPTTTTTQPTTTTTQPTSTSRPAITIPGLPPIPIGPRN
>NZ_CP013049.1|WP_057138206.1|4368718_4371088_+|LuxR-family-transcriptional-regulator
MKVLVNGTAGSGKTFVLSRIREALGSAGTPAVNHVPEAAPGPNTGPFVIDDADSLTDRQLETLRXVVENDPAAIIVVAAAPRRNPALRSLFQALERESPAITLGPVNATDIGRMSPLAAPFAEQIAAASGGVLALTAAAVERLGDPDPLQSALRAIDTRVDELLRRLSPMAQAAVLLMSLNPGIGASDVAAALALPDAADLVDEALASGLIAGPGHVAFAARVHGCAARLLGAARHLDLERSLLRTQLEMGSVSADLALALVGHGLRDLEVARLLSNWATTESDPLSAADLYRAALTAGAEPDPIRVPLAESLARAGDLAAAAAQADEVLASTDPAQRTAGVRVAAAIACHNGDSGQAAALYSWLGADMDGLTALSASPVFVGTGQLAKGRKSLEDNVGAPPTTSATAQRNAALGVIASVEGRGQEALSLLGQAVTQQPSTSSFIPDSTVALAALTMLHSGDTARARSILTGAIRADRRHDVFGVRHRLLAAWIAMLSGDLSGAVQWLPGAQVELSRRDRLFAESLRTGIARRHGDTGPLRQHWQASMDALSAYSIDLYTLLPVGELWVAAARLRTLDVMTHHLDRAFAVLAHLGDPIAWSAPLRWAGVHAAILTNSPETLAPHGQALAAGAGSSTYARILATAGRTWLRVLANHVDGEEVDSAARMLADTGLGWDATRLASQAALHANDPKVAASMLALARDLRSPSAAADGESTPSSAVHSPTSTRLSEREREVAELLLRGLPYRDIGAQLFISAKTVEHHVARIRRRLGAESRSDMFSMLRAILTP
>NZ_CP013049.1|WP_005112277.1|4371246_4374177_+|4Fe-4S-dicluster-domain-containing-protein
MSTATITLGIIGVIFSLVAWGSFFGGVVKMVRVILSGQPDRTRFRPFLPRLKQLIVEVVAHTRMNKFRTVGWAHWLVMVGFLGGFPLYFESYGQTFNPEFHWPIIGDTFLWHLWDELLGIGTVIGIVTLIIIRQLNHPRKPERLSRFGGSNFFAAYTIEMIVLVEGLGMVLVKSGKIATFHNSHPSSDFFTMNVAQLLPESPIMVSVFAFIKMMSGGLFLLLVGRKLVWGVAWHRFAAFFNIYFKRNADGSVALGAAKPMMSGGKVLEMESADPDVDAFGAGKVEDFSWKDLLDVTTCTECGRCQSQCPAWNTGKPLSPKLLITSLRDHTYAKAPYLLAGEDKSKLSEAEIAEGERQLVGGEGAVIDHEVLWSCTTCGACVEQCPVDIEHVDHIIDMRRYQVLIESEFPGELAGLFKNLENKGNPWGQNAKDRLNWIEEVDFDVPVFGQDVDSFADFEYLFWVGCAGAYEDRAKKTTKAVAELLALAGTKFLVLGADETCTGDSARRAGNEFLFQQLAMQNIELLNSVFEGVEQKQRKIVVTCAHCFNALGNEYPQVGGDYQVVHHTQLLNRLVRDKKLVPVAPVSQDVTYHDPCYLGRHNKVYTAPRELIGASGAAITEMPRHGERSMCCGAGGARMWMEEQLGKRINIDRVDEALSTPASKIATGCPFCRVMLTDGVTARDDSAAVEVVDVAQLLLESVGRTEDIRKALPAKGTAAAAAAERAATKTAEPEPVVAEEEAPATTKAEAAAPAAEAKPVSGLGMATGAKRPGAKKTAAENSTAEASTATPTAEAAPAAPVKGLGMAAGAKRPGAKKATAETSAATPPAASASPPASQAPAAAAAPAPPVKGLGMAAGAKRPGAKKTAPAAPAAPAPEAAAVPSESEAPTATETSAVAEPPVKGLGIAAGARRPGAKKAAPATESAPEPAQPATAPEPTEPATSAPKDEAPETSSTPEPPVKGLGIAPGARRPGRRN
>NZ_CP013049.1|WP_030142800.1|4374184_4375495_+|pyridoxal-phosphate-dependent-aminotransferase
MDSNATIETVSTDNLPIDVPPRVPGLSPRQHQRVFAQSTKLQDVLYEIRGPVHAHAARLEAEGHRILKLNIGNPAPFGFEAPDVIMRDIIQALPYAQGYSDSKGILPARRAVVTRYELVDGFPYLDVDDVFLGNGVSELITMTTQALLDNGDQVLIPAPDYPLWTAATSLAGGTAVHYLCDETNGWMPDIEDLESKITERTKALVIINPNNPTGAVYSREILTKMVELARKHQLLLLADEIYDKILYDDAEHISVASLAPDLLCFTFNGLSKAYRVAGYRSAWLAITGPKDHAASLLEGVNLLANMRLCPNVPAQHAIQVALGGHQSIEDLVLPGGRLLEQRDVAWTKLNEIPGVSCVKPQGALYAFPRLDPEVHHIHDDDQLVLDLLLNEKILLTQGTGFNWPEPDHLRIVTLPWARDLAVAIERLGNFLASYRQ

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Crispr_ID: NZ_CP013049_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013049_2

5105873-5106003

Orphan

Consensus_repeat	Method
CTCCCGTCCCGCACAGCGCCGAGCCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP013049_2

>merge|NZ_CP013049|2|5105873-5106003|CRISPRCasFinder
CTGCCGCTCCGCACACCGCGGAACCGCCAGCAGCGCCTCGCACCGCAGAAGCCTCTCCCGTCCCGCACAGCGCCGAGCCGGTTGTTCCCCACAGCGCCGAGCCGCCTCCCGTCCCGCACAGCGCCGAGCCG

>NZ_CP013049|2|2|5105873-5106003|CRISPRCasFinder
CTGCCGCTCCGCACACCGCGGAACCG	CCAGCAGCGCCTCGCACCGCAGAAGCCT
CTCCCGTCCCGCACAGCGCCGAGCCG	GTTGTTCCCCACAGCGCCGAGCCGC
CTCCCGTCCCGCACAGCGCCGAGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013049.1\|WP_126690959.1\|5095431_5097423_-\|DUF87-domain-containing-protein	unknown	unknown	gnl\|CDD\|274858
NZ_CP013049.1\|WP_057138137.1\|5102907_5103762_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_079752582.1\|5111884_5113975_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|225100
NZ_CP013049.1\|WP_079752580.1\|5107758_5108124_+\|DUF2185-domain-containing-protein	unknown	unknown	gnl\|CDD\|370760
NZ_CP013049.1\|WP_057138142.1\|5108350_5108668_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138130.1\|5094782_5095412_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224588
NZ_CP013049.1\|WP_057138212.1\|5108718_5109498_+\|DUF2185-domain-containing-protein	unknown	unknown	gnl\|CDD\|370760
NZ_CP013049.1\|WP_057138141.1\|5107043_5107748_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138143.1\|5109544_5110015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138132.1\|5097422_5098484_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138133.1\|5098667_5098982_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP013049.1\|WP_057138136.1\|5099493_5102349_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240129
NZ_CP013049.1\|WP_057138213.1\|5110007_5110517_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_162259894.1\|5108145_5108283_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138144.1\|5110652_5111546_-\|Abi-family-protein	unknown	unknown	gnl\|CDD\|377910
NZ_CP013049.1\|WP_057138129.1\|5093898_5094762_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138138.1\|5103813_5104098_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP013049.1\|WP_126690960.1\|5099272_5099497_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138140.1\|5106563_5107043_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138134.1\|5098978_5099203_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013049.1\|WP_126690959.1\|5095431_5097423_-\|DUF87-domain-containing-protein	gnl\|CDD\|274858	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa. This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking].	4.68886e-07
NZ_CP013049.1\|WP_057138133.1\|5098667_5098982_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	3.1973e-08
NZ_CP013049.1\|WP_057138136.1\|5099493_5102349_+\|hypothetical-protein	gnl\|CDD\|240129	cd04859, Prim_Pol, Prim_Pol: Primase-polymerase (primpol) domain of the type found in bifunctional replicases from archaeal plasmids, including ORF904 protein of the crenarchaeal plasmid pRN1 from Sulfolobus islandicus (pRN1 primpol). These primpol domains belong to the archaeal/eukaryal primase (AEP) superfamily. This group includes archaeal plasmids and bacteriophage AEPs. The ORF904 protein is a multifunctional protein having ATPase, primase and DNA polymerase activity, and may play a role in the replication of the archaeal plasmid. The pRN1 primpol domain exhibits DNA polymerase and primase activities; a cluster of active site residues (three acidic residues, and a histidine) is required for both these activities. For pRN1 primpol, the primase activity prefers dNTPs to rNTPs; incorporation of dNTPs requires rNTP as cofactor. The pRN1 primpol contains an unusual zinc-binding stem, which is not conserved in other members of this group.	1.38071e-11
NZ_CP013049.1\|WP_079752582.1\|5111884_5113975_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|225100	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair].	3.17811e-16
NZ_CP013049.1\|WP_079752580.1\|5107758_5108124_+\|DUF2185-domain-containing-protein	gnl\|CDD\|370760	pfam09951, DUF2185, Protein of unknown function (DUF2185). This domain, found in various hypothetical bacterial proteins, has no known function.	1.03889e-18
NZ_CP013049.1\|WP_057138144.1\|5110652_5111546_-\|Abi-family-protein	gnl\|CDD\|377910	pfam07751, Abi_2, Abi-like protein. This family, found in various bacterial species, contains sequences that are similar to the Abi group of proteins, which are involved in bacteriophage resistance mediated by abortive infection in Lactococcus species. The proteins are thought to have helix-turn-helix motifs, found in many DNA-binding proteins, allowing them to perform their function.	1.91841e-45
NZ_CP013049.1\|WP_057138138.1\|5103813_5104098_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.26104e-11
NZ_CP013049.1\|WP_057138130.1\|5094782_5095412_-\|hypothetical-protein	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	2.287e-09
NZ_CP013049.1\|WP_057138212.1\|5108718_5109498_+\|DUF2185-domain-containing-protein	gnl\|CDD\|370760	pfam09951, DUF2185, Protein of unknown function (DUF2185). This domain, found in various hypothetical bacterial proteins, has no known function.	1.3461e-29

>NZ_CP013049.1|WP_057138138.1|5103813_5104098_+|helix-turn-helix-transcriptional-regulator
MGEEEQQWTPKRVTNADAAVGAVLLRLREQAGISVREVEQRTGISRSVLSRIERGERPARVLELEPLAQVYEMTIEDLITTITADPDVRAASSE
>NZ_CP013049.1|WP_057138137.1|5102907_5103762_+|hypothetical-protein
MGPDDFFEETESINTWTGEPTTTSKLRTGFLNELRAGPVAGIDDLDAAVALTHLVWDDLIAFGTGGGNTLDDKQLTLAQRALTETLSRIGITLTFPWRDFTAFKSHWVRNGCSGSWQARRDLLENLFAPVQAELDRQEDAQFRAVNAEAVSPHTKTGWPTVDEELTELRRRFRTATTTQDYRDVGNRAVAVLEALSRTVYDPVAHLREGETEPPVDKTKQRIGRYVEDSLAGKDNEAIRGVVNKVLELAHSVKHSTQPTRREAGIIADSVIMLANILRRVDQDF
>NZ_CP013049.1|WP_057138136.1|5099493_5102349_+|hypothetical-protein
MSTPFSPEELQRVAANRAALADAHAARESEIDMWLERLSNAEAVLMPLTVAGKRPVESAWQQTAATDWDAIEEHIRRGGNIGAHLGASRWVAWDGDNAAATAAMLDGGFDLFTVSAGSRNPAHTHAGGAHCLWRLPGWVPLVRLTGPTKAVMLDGGASIDVLAGNHQIAVPPSVVVIKEPTHYVGTYATASEAGYCEPDRDGWLRVADSDDGVLPELPLWALSDELLAYAPEGTVVGEPPAGWEPMAGTVTVWREAEARVREPGDSDDELTAAVDGLDLLSMLEAAGIAGERVGFDSCGPCETWLRAGSNAEKSITVHNCGVHGARVQVWTTAFADLPQGGHSRLDAYCGLTGRERGAVMKELGLVPEKRLIAVDSDSLEAAAAELEAAAAEGVTTVAVPTTGTPMPDGSHRGEIVQVEVGADGLLRRAQRLRGAAAELRAGQHPVEPRDGAVLIGADSVVGAPTVGANALQPMPEPELTPEEQAAAEAEALADKRDPYRHLPDPCTEELEELVFGDPRLPQVGQIRTAARAAAMSPWSTLGLSIGRGLLRVRASVLVPDLVGGMPAPLNYQIGIVGASGRGKGAAHGLVIYDAGVLIHTEESIDKKFMPPSGAALAGLFVARQKDDDGKVEVVPIREAAWCDWSEVDTLTAQSGRGGNDLASELRAAITGAELGTDPKKDGADPLKVEPLSYRILVSFSTQYGKPAMALMAERDGGTLQRTNWFSTSDPRSLSKRPRGPKPRAEIDIMRGLPTSHVVKHPDGDRELLTVDDAIHDEVWEAQANKIRFDRDVDELAGHQNLNRLRTAAWAALIQHQAHIGAFEWEWAGHVMEHSRRVRDRLEASVKGLKKEQAQENGSLDFDRKNAAELAKVAHTEALLTSLAKWGRDVREGRNKFGKSGPTFTLRDIQASAKNAKSERYTRAAELATELCMRQLWVCEGERMRSVEPDPE
>NZ_CP013049.1|WP_126690960.1|5099272_5099497_+|hypothetical-protein
MTVPMTVAEASAAHDTPTIEVVARSLPELHDLLTRPRAEGEPLHVRLAGPAAAELFGVGVAVRVAATGGEAVAR
>NZ_CP013049.1|WP_057138134.1|5098978_5099203_+|hypothetical-protein
MSTEGVRANAEAAFRAAHPDDRSGSLIAGCRAAARVADPDHAVGFTIGALADEERARASEIDVWLDCNGARIAS
>NZ_CP013049.1|WP_057138133.1|5098667_5098982_+|helix-turn-helix-domain-containing-protein
MRRMGYKEAAEIAGVSLRKMRYLVESGEILARRCGSRVLIAERDLEEWLNSLPLVVDTEADTEADTETATYDEGEGVSDRARTQGAARVRAASATEVRQEVAAA
>NZ_CP013049.1|WP_057138132.1|5097422_5098484_-|hypothetical-protein
MALTSAFVDCGTVLERCTLVNMINRPDQRPQGLSVTSPARVGLLTCGFTLATLAVATLNTPVAHAEPVVRCRTLEGGGDYVCVTETPTAPATTGSTGTSSGAGLGDWFSEHAGAFVFVIAVAAVVAIVAMVKSGTMKDKREASEAELARGRALAEQHHAAAVQRAHEEAAAQVPPREQWDPHNVGLAPPPMPAPKLPPAPPTSPTDLARYAAFGDVVPWIEGSALAAVTAPNGDRSRAEAAFAEAVRTAGLGTTDEDGTFIPDATLASVRAYLDGSGDVEFVVRTRDITIGEKQLATITHFLLLTARVASAGPWEREVATGRYTIRLSMNAKAAQEQVQEPKETGPRIDPRWA
>NZ_CP013049.1|WP_126690959.1|5095431_5097423_-|DUF87-domain-containing-protein
MTGGFDELFGDTSTATAAPTKKKAKTAAKKPAAADRPQRSQADHDGEVRAAADRYMALLPEIRAARPQGPRVEEAAPQLTGPAWVIDAWETALFGGDHAAFGLDARFGAEVFTRGDTLYVQVTVPAELAGEGRKAVAETMLAETARRQNLGEYEAIPGDDKRKLFLVRTNAFDTTNGWREHPKTGAFYRSAMSGGKYHQELFDLVGLRVVDPKTGEIKYPQREFGSDDRGGTVTLTLPPGMLPRDVIAAEPALRAALAMPELTVTAGDGLRPTIHLNSKPLVRAFPKSNPLSAGRLWLPRTEAERYAVSNEVRLFLGVTETGEVVAPRLKDRSHAAIFGMTNSGKSTTMVILARSLAAQGAEVWLADAKGTPEFRSLYKEGVPGITHLSVATPALMHATVHKLRELYKFRAAVANELADRGLGVDDILWPRVVLIFDEMGEFLNTALSDGGDRVAKAQAQATVSMLGEIGAKARAYGVHLIVAGQHVYVAALPNKVKEHLSIRAVLGKASDTHIQRLFDEQDRDAAKAAREGILPGQKGRGIVMADDAEVVQFQSFYNDAEQGAKFARDTAGTPRLKRWGHQFPIEDDAPGAHGAWQSWGAWEGDKSFEPDGTVEDLGTVVLDRPNPVTGELEPDPGAAAWDMTSPAYNPGSAPLSAAFQNVN
>NZ_CP013049.1|WP_057138130.1|5094782_5095412_-|hypothetical-protein
MITNTNATLTVPVGVTSDGNPVAVDLRRNSAVLVAGIAGSGKSEMLCRMRYALERQLDTDHLFHAQGIRAGADAVILAARDERRRRMRERRIDDSPAVLLVDDFGVMCIGRDRSDELVRAIEEIAVKGRAAGVHLVLATQGTEGLGRALLMNLSTRIVVGRLVHPVTTNVFSDGERELIADAGITHIGRGGGVLIGTDGRPTPFAALPL
>NZ_CP013049.1|WP_057138129.1|5093898_5094762_-|hypothetical-protein
MTTTTDRIIAAANAVRTTHLAALRPLAEVAGRTVAAPPTVEAALAAALHLIAARPALDHTVTELLRELVAAGITSTKLARLLSIRSSTLTARLDAPAPSAAPESELHYGMFRRKDKLSVRAARESLITAAAELGRTYAAALRPISTVSQGSVPEAATVDAALEAVLHLHRSRQHLDAALDPILAALVLGGVRRMSLAEALAVHPNTLQRRLMSEPLAHARWADLIENGDGTWSVAPAEVGRYKPTEELDEALVEAAVAEAITAVAENGPSARAREYSATVAESRVAF
>NZ_CP013049.1|WP_057138140.1|5106563_5107043_+|hypothetical-protein
MTDTVLGAIAYSEPGGWEGTYTILFLGREVTVRMALGGWDEADPVEPVQRDAVEQFTARKAELCAQADDALYAEYLQRRPELREQFGDDADRLMPIIDGKEGLSNLVAPDFFQVPLPRRGSTDRVVALMYNCSWDVELGLAVKFVNESIAEVGPQNIVL
>NZ_CP013049.1|WP_057138141.1|5107043_5107748_+|hypothetical-protein
MHEPVWARDAFVNSVWVATGETPEWIADRTDALLAQLGEALGITHWDTTRDDRWEGPADALAAIVRRNPVREALPEGEEGEVIPSEGYSMVLNGAGPSVSVKVAVHAGSIAVGRRVPSHRLHIDLREATSAGITSEVGDAVCAAVASAWRPATLTLTDSATNRLARRGGWKIGAGYRTWISSEVGAVSRVADGLTATELAGGTLISAPDDWSAEQVVAAMTETLAANGLDEVPH
>NZ_CP013049.1|WP_079752580.1|5107758_5108124_+|DUF2185-domain-containing-protein
MTRHIEFIPHAGACLATTNVMERRGKVRWLVRMPSTGGADNGWQIMSHVDTTDYLNDKSNWRIVAFNDVCNIEPALIGIYDFPVGSDLQIVRDDRGISIYDTPTGRQIPVEEFYVPPQFRD
>NZ_CP013049.1|WP_162259894.1|5108145_5108283_+|hypothetical-protein
MAALAGQLLFFAMVAALIGGVVWAVAVMRKPRPPLEEADDEDEDW
>NZ_CP013049.1|WP_057138142.1|5108350_5108668_+|hypothetical-protein
MVEYVLAEGGGASWVGPAVRAVLFTAAGVALLVVGVRRRVARARWNREDDRRLLHPDGSAASDVHRTSNPHSGGIWPIAVGAVILILGLLHVLDLVATLHVAGAI
>NZ_CP013049.1|WP_057138212.1|5108718_5109498_+|DUF2185-domain-containing-protein
MANKKFHLPAEDIVPGLAPVDGCLATDRILVDGSPVGYMYRDGSGWVFTAGDETPEYLADPGHLNLVSLNVIANYDRATVPYLQAPPGAAFIRHGDAFVEDPEGAPREPDEPAPPALNPQFPVVNGDHALTADWVLTTPEPMNFRIDRDAGSSSAVFWRPGLTAMLTPWGNPRNDTPARRLQQVRGHVSPHGFDHAEWSDDGVHYLTYRLAEGTGDGRLPALYGFVVSSAGHVQLAVYVDSGDDLMSAQALVRSITNRR
>NZ_CP013049.1|WP_057138143.1|5109544_5110015_-|hypothetical-protein
MDEVLAYQLFGDWSNAHQARGVSINGDFAPEEEAEDWAEELIGGMVAAMAHVGAVVERGPIRVHDGKVFVELDGDAFMVRDIDGEGSRASASLERVLSRFATIAARRGCTQRWFYWYTGDPVGMAYFVAPEELVTSSGVDVRELGTGEQWYEAQPD
>NZ_CP013049.1|WP_057138213.1|5110007_5110517_-|hypothetical-protein
MGVPTHVMEFSSGWATTMGNGSGPLQFLGPLRQLNGTERWFITFYALPPGKSYEEIRHQGTEEYIQAGGSAEAMMLDIRKPGGQQWGAASVRYFIGHPHEGNLPLDVPIELPRGPEFVSAAEVFDAEEAADIFISYYKTGDIPPGYVLRPVEGYTGGGDLIDLRGVTSG
>NZ_CP013049.1|WP_057138144.1|5110652_5111546_-|Abi-family-protein
MKPSLSWEAQVALLVERGLTIPNTDECAAFLAAHNYYRFSGYMRYFQQAPHEGNNLFQPGTTFEEIRDVYDADEELRLALIPRLARAEVLLRTHTAYVIANDHGPRGKYLEEDFYTDIGDAEPTVESCLRDIERSKERHILRYKSTDTGGVNFAELPVWSAVEAWSFGTLSKCIERGARGALAGAVATSIGVAKAGFAYRVKALVYLRNRCAHHSRLWHHSVIDAGPTPNNVRAKAKRLGGQFESRSVLDVIASLDNILDRGRTGNAILPELVQRHERTSIFWQGLSRPQNPRDNRE
>NZ_CP013049.1|WP_079752582.1|5111884_5113975_+|site-specific-DNA-methyltransferase
MADETNILDQLISRVPDESLRSYLAREVDLLRGSRHFGLVFDRHLPESVRLVDYPIRKGVRVALRDESSTETWLVTGFVDQERKVAVLSGDGGERPVDDLAVVREFGEPIYPGLRSVERIPNGPEDAPWHVVINGENYHALQALRSTHRGKVDLIYIDPPYNTGNDGWIYNDRYVDQADRAKSSKWLSFLERRLQIARDLLKPSGVICISIGYAEAHRLQLLAEQTFRAHTVQLVTLQTSEAVNPKAGFNFVHEHLVCITPADFVPQQMTFTGNKPGAAWHAMNLAAFDKTQRPNQAFPIFVDVKTGAVHSTGPTLADLEKSGEYTGDRADYPYEMPAPEGTVAIWPITGKGEHCVWRLVPESFMANWDKGYIKVLRKKGKAAAIAPFGIQYLSEGEIAKVESGETEVLGREPGVPTVILGANMVSGDKIPSMWNELTHRTTEGNSHLKKILGGKRFPYPKPVELIMDIVMGFSQGNRDAVILDFFGGSGTTLEAVMELNTFDGGNRQAILVTNNELSATEAKKLRKAGLHPGDAEWESKGVFEYVCRPRVSTVVRGKRPDNSEYSEGLPANVEMFDLVYLDPSSVRRGREFPALAPLLWLQGGARRDRIEADSGCGWALTGTYGVLFDIDTLTAFADAVTAAATTGSPPQVLFIVTDSLAEYQEAVDRLPVGIDTVQLYEDYLLNYTDNFSGGAR

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Crispr_ID: NZ_CP013049_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013049_3

5119191-5119644

Orphan

I-E

Consensus_repeat	Method
CTGCTCCCCGCGTAAGCGGGGATGA	CRISPRCasFinder
CTGCTCCCCGCGCAAGCGGGGATGA	CRT
CTGCTCCCCGCGCAAGCGGGGATGACCC	PILER-CR

7 spacers

The CRISPR arrays of NZ_CP013049_3

>merge|NZ_CP013049|3|5119191-5119644|CRISPRCasFinder,CRT,PILER-CR
CTGCTCCCCGCGCAAGCGGGGATGAACCGGTTTGGTCGCTCGGCCCGGCCGTGCGCGATGCCTGCTCCCCGCGCAAGTGGGGATGAACCGCATCTCGGTGATCTGCACCGTCGACGCCGTGACTGCTCCCCGCGCCTGCGGGGATGAACCTCCGGTCCAGGTACCGCGTCCAGAAGATGCGGTCTGCTCCCCGCGTAAGCGGGGATGAACCGGAGCACCTGGCGCTTCACGTTCACGAGGACGAGCTGCTCCCCGCGCAAGCGGGGATGACCCTGTTGTTCCAACTTTTGCGGAACCCTCTGCAGCGCTGCTCCCCGCGCAAGCGGGGATGACCCCCGTCGGTGTGGAACCGGCAGAGCCACAATGCCACCTGCTCCCCGCGCAAGCGGGGATGCCCCCGGCCGCTGGCTCCGGCACCCGGAAGCCGAGCCGCTGCCCCCGCAGCGGGGATCGA

>NZ_CP013049|3|3|5119191-5119585|CRISPRCasFinder
CTGCTCCCCGCGCAAGCGGGGATGA	ACCGGTTTGGTCGCTCGGCCCGGCCGTGCGCGATGC
CTGCTCCCCGCGCAAGTGGGGATGA	ACCGCATCTCGGTGATCTGCACCGTCGACGCCGTGA
CTGCTCCCCGCGCCTGCGGGGATGA	ACCTCCGGTCCAGGTACCGCGTCCAGAAGATGCGGT
CTGCTCCCCGCGTAAGCGGGGATGA	ACCGGAGCACCTGGCGCTTCACGTTCACGAGGACGAG
CTGCTCCCCGCGCAAGCGGGGATGA	CCCTGTTGTTCCAACTTTTGCGGAACCCTCTGCAGCG
CTGCTCCCCGCGCAAGCGGGGATGA	CCCCCGTCGGTGTGGAACCGGCAGAGCCACAATGCCAC
CTGCTCCCCGCGCAAGCGGGGATGC

>NZ_CP013049|3|1|5119191-5119644|CRT
CTGCTCCCCGCGCAAGCGGGGATGA	ACCGGTTTGGTCGCTCGGCCCGGCCGTGCGCGATGC
CTGCTCCCCGCGCAAGTGGGGATGA	ACCGCATCTCGGTGATCTGCACCGTCGACGCCGTGA
CTGCTCCCCGCGCCTGCGGGGATGA	ACCTCCGGTCCAGGTACCGCGTCCAGAAGATGCGGT
CTGCTCCCCGCGTAAGCGGGGATGA	ACCGGAGCACCTGGCGCTTCACGTTCACGAGGACGAG
CTGCTCCCCGCGCAAGCGGGGATGA	CCCTGTTGTTCCAACTTTTGCGGAACCCTCTGCAGCG
CTGCTCCCCGCGCAAGCGGGGATGA	CCCCCGTCGGTGTGGAACCGGCAGAGCCACAATGCCAC
CTGCTCCCCGCGCAAGCGGGGATGC	CCCCGGCCGCTGGCTCCGGCACCCGGAAGCCGAG
CCGCTGCCCCCGCAGCGGGGATCGA

>NZ_CP013049|3|1|5119436-5119588|PILER-CR
CTGCTCCCCGCGCAAGCGGGGATGACCC	TGTTGTTCCAACTTTTGCGGAACCCTCTGCAGCG
CTGCTCCCCGCGCAAGCGGGGATGACCC	CCGTCGGTGTGGAACCGGCAGAGCCACAATGCCAC
CTGCTCCCCGCGCAAGCGGGGATGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013049.1\|WP_057138142.1\|5108350_5108668_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_079752582.1\|5111884_5113975_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|225100
NZ_CP013049.1\|WP_126690961.1\|5120183_5122406_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138153.1\|5128102_5128402_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138215.1\|5124185_5124797_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340813
NZ_CP013049.1\|WP_057138148.1\|5119895_5120108_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133390
NZ_CP013049.1\|WP_057138212.1\|5108718_5109498_+\|DUF2185-domain-containing-protein	unknown	unknown	gnl\|CDD\|370760
NZ_CP013049.1\|WP_057138147.1\|5118927_5119107_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138214.1\|5123052_5123337_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138152.1\|5125089_5125473_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP013049.1\|WP_065209208.1\|5123463_5123709_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138143.1\|5109544_5110015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138154.1\|5128459_5128813_-\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|319909
NZ_CP013049.1\|WP_057138213.1\|5110007_5110517_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138145.1\|5113971_5116512_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|368155
NZ_CP013049.1\|WP_057138144.1\|5110652_5111546_-\|Abi-family-protein	unknown	unknown	gnl\|CDD\|377910
NZ_CP013049.1\|WP_057138146.1\|5118040_5118853_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_153995297.1\|5123727_5123886_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_162259894.1\|5108145_5108283_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013049.1\|WP_057138151.1\|5124823_5125093_+\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|239274

Protein	Function_ID	Function_description	E-value
NZ_CP013049.1\|WP_057138154.1\|5128459_5128813_-\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	gnl\|CDD\|319909	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	0.00115371
NZ_CP013049.1\|WP_079752582.1\|5111884_5113975_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|225100	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair].	3.17811e-16
NZ_CP013049.1\|WP_057138145.1\|5113971_5116512_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|368155	pfam04851, ResIII, Type III restriction enzyme, res subunit.	2.97642e-09
NZ_CP013049.1\|WP_057138144.1\|5110652_5111546_-\|Abi-family-protein	gnl\|CDD\|377910	pfam07751, Abi_2, Abi-like protein. This family, found in various bacterial species, contains sequences that are similar to the Abi group of proteins, which are involved in bacteriophage resistance mediated by abortive infection in Lactococcus species. The proteins are thought to have helix-turn-helix motifs, found in many DNA-binding proteins, allowing them to perform their function.	1.91841e-45
NZ_CP013049.1\|WP_057138152.1\|5125089_5125473_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.00373083
NZ_CP013049.1\|WP_057138148.1\|5119895_5120108_+\|hypothetical-protein	gnl\|CDD\|133390	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.	4.43088e-05
NZ_CP013049.1\|WP_057138212.1\|5108718_5109498_+\|DUF2185-domain-containing-protein	gnl\|CDD\|370760	pfam09951, DUF2185, Protein of unknown function (DUF2185). This domain, found in various hypothetical bacterial proteins, has no known function.	1.3461e-29
NZ_CP013049.1\|WP_057138215.1\|5124185_5124797_+\|hypothetical-protein	gnl\|CDD\|340813	cd16962, RuvC, Crossover junction endodeoxyribonuclease RuvC. Crossover junction endodeoxyribonuclease RuvC is also called Holliday junction resolvase RuvC. It is part of the RuvABC pathway in Escherichia coli and other Gram-negative bacteria that is involved in processing Holliday junctions, which are formed by the reciprocal exchange of strands between two DNA duplexes. Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. RuvC is thought to bind either on the open, DNA exposed face of a single RuvA tetramer, or to replace one of the two tetramers. Binding is proposed to be mediated by an unstructured loop on RuvC, which becomes structured on binding RuvA. RuvC can be bound to the complex in either orientation, therefore resolving Holliday junctions in either a horizontal or vertical manner. HJRs occur in archaea, bacteria, and in the mitochondria of certain fungi. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the Escherichia coli HJR. RuvC and its orthologs are homodimers and display structural similarity to RNase H and Hsp70.	6.69907e-06
NZ_CP013049.1\|WP_057138151.1\|5124823_5125093_+\|glutaredoxin-family-protein	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	1.23686e-13

>NZ_CP013049.1|WP_057138147.1|5118927_5119107_-|hypothetical-protein
MGTDYRHSITNLHRGVHCDVNSARTRLHSVIELMEQTNLTAAVADLRAVEQRLADVASR
>NZ_CP013049.1|WP_057138146.1|5118040_5118853_-|hypothetical-protein
MIERMSRKAGFAIAAAAAATVALSGCSTGVAGQPVAVPATSSATVAGAEAAVESTWLTIPAEQAAAAPKRIELTQTASGARCTAGPAIAAASTPTRRGFVAAGHCDEVPGSTVTVGGESIEPYTDTRRGDRGVTVAWGTANAAPTVAGGFKVAGVLKQPAVQRLEYGTPVCMDGAISGVRCGTVTENDASGIYVKMPIERGDSGAPLFLVSDRGTATLIGIVEQRSNGFTFGAYLDPLLDEVGAKVLTDRTAAIDPSTDPRYSSATSTIQ
>NZ_CP013049.1|WP_057138145.1|5113971_5116512_+|DEAD/DEAH-box-helicase-family-protein
MKFTLEPYQSTAVEALLSSLTKARADYLDDGDLTAVGLTAPTAAGKTVIATAVLEGLYLGTPTREPRPNTTVLWITDDRALNAQTINKITTASGGRIDVNRIRLLGEEDSRTLEPGLIYFVHIQALQKNSTLHAVRADGTRNDKRTHGVWDMIANTVRERGEDFVVIWDEAHRGSGTTTTERKTIAGTIVGGGPTNIGTVQPPAPVVLGISATPDRFEAAMKAANRVRRLHAVKAGEVRESGLLKDRILLRSLGETQAANNTMLALAVEDLKTSDEAWRTHHENTGDRLVEPLLVVQVEPKVTEARLVEILSVISSTWPELTDYAIAHAFGDPHGPLKVGDKTVRYLAPEAIAGDDRARVVLFKSALTTGWDCPRAEVMISFQNKDDYTEIAQLIGRLVRTPLAKRVEGDDRLNEVAAYLPGFRAEHVARVVNALTEDETVEVDVVVAPVVCERSSKVPSEVFGLLDTLPSYTRQRTTFPSRTAQLMRLASALTEHKFVEQGSAKARVWIVDQMRAADGQRSDEIDAKAKDILSLTINTTVVEYGELIMLSEGKSDTPTNERDLEGYFRRARRVLPDGSANWYFNALCDAGMDEVDAMARLTAMAEMGFKEIVETQAAALISTWRDQHQSEVSRRPRHIRDQIEPLWHVGTTPMLPTTVEARDVYAAATEKVRGGTTEPITTYPSHLYVIPDGKPNAGEFPVDTSRSSWEAAVLEAELKAKTLVGWYRNPSSGKHALAVPYEFGDKYQLMHPDFLFWHDEGDGKYVMDIVDPHNHSLADTHAKWAALSKYAQDHPDRVRRCLAVAEIDGSMRALDLTKDGIDERIAVATNKNLIEALFAAEGMAYT
>NZ_CP013049.1|WP_079752582.1|5111884_5113975_+|site-specific-DNA-methyltransferase
MADETNILDQLISRVPDESLRSYLAREVDLLRGSRHFGLVFDRHLPESVRLVDYPIRKGVRVALRDESSTETWLVTGFVDQERKVAVLSGDGGERPVDDLAVVREFGEPIYPGLRSVERIPNGPEDAPWHVVINGENYHALQALRSTHRGKVDLIYIDPPYNTGNDGWIYNDRYVDQADRAKSSKWLSFLERRLQIARDLLKPSGVICISIGYAEAHRLQLLAEQTFRAHTVQLVTLQTSEAVNPKAGFNFVHEHLVCITPADFVPQQMTFTGNKPGAAWHAMNLAAFDKTQRPNQAFPIFVDVKTGAVHSTGPTLADLEKSGEYTGDRADYPYEMPAPEGTVAIWPITGKGEHCVWRLVPESFMANWDKGYIKVLRKKGKAAAIAPFGIQYLSEGEIAKVESGETEVLGREPGVPTVILGANMVSGDKIPSMWNELTHRTTEGNSHLKKILGGKRFPYPKPVELIMDIVMGFSQGNRDAVILDFFGGSGTTLEAVMELNTFDGGNRQAILVTNNELSATEAKKLRKAGLHPGDAEWESKGVFEYVCRPRVSTVVRGKRPDNSEYSEGLPANVEMFDLVYLDPSSVRRGREFPALAPLLWLQGGARRDRIEADSGCGWALTGTYGVLFDIDTLTAFADAVTAAATTGSPPQVLFIVTDSLAEYQEAVDRLPVGIDTVQLYEDYLLNYTDNFSGGAR
>NZ_CP013049.1|WP_057138144.1|5110652_5111546_-|Abi-family-protein
MKPSLSWEAQVALLVERGLTIPNTDECAAFLAAHNYYRFSGYMRYFQQAPHEGNNLFQPGTTFEEIRDVYDADEELRLALIPRLARAEVLLRTHTAYVIANDHGPRGKYLEEDFYTDIGDAEPTVESCLRDIERSKERHILRYKSTDTGGVNFAELPVWSAVEAWSFGTLSKCIERGARGALAGAVATSIGVAKAGFAYRVKALVYLRNRCAHHSRLWHHSVIDAGPTPNNVRAKAKRLGGQFESRSVLDVIASLDNILDRGRTGNAILPELVQRHERTSIFWQGLSRPQNPRDNRE
>NZ_CP013049.1|WP_057138213.1|5110007_5110517_-|hypothetical-protein
MGVPTHVMEFSSGWATTMGNGSGPLQFLGPLRQLNGTERWFITFYALPPGKSYEEIRHQGTEEYIQAGGSAEAMMLDIRKPGGQQWGAASVRYFIGHPHEGNLPLDVPIELPRGPEFVSAAEVFDAEEAADIFISYYKTGDIPPGYVLRPVEGYTGGGDLIDLRGVTSG
>NZ_CP013049.1|WP_057138143.1|5109544_5110015_-|hypothetical-protein
MDEVLAYQLFGDWSNAHQARGVSINGDFAPEEEAEDWAEELIGGMVAAMAHVGAVVERGPIRVHDGKVFVELDGDAFMVRDIDGEGSRASASLERVLSRFATIAARRGCTQRWFYWYTGDPVGMAYFVAPEELVTSSGVDVRELGTGEQWYEAQPD
>NZ_CP013049.1|WP_057138212.1|5108718_5109498_+|DUF2185-domain-containing-protein
MANKKFHLPAEDIVPGLAPVDGCLATDRILVDGSPVGYMYRDGSGWVFTAGDETPEYLADPGHLNLVSLNVIANYDRATVPYLQAPPGAAFIRHGDAFVEDPEGAPREPDEPAPPALNPQFPVVNGDHALTADWVLTTPEPMNFRIDRDAGSSSAVFWRPGLTAMLTPWGNPRNDTPARRLQQVRGHVSPHGFDHAEWSDDGVHYLTYRLAEGTGDGRLPALYGFVVSSAGHVQLAVYVDSGDDLMSAQALVRSITNRR
>NZ_CP013049.1|WP_057138142.1|5108350_5108668_+|hypothetical-protein
MVEYVLAEGGGASWVGPAVRAVLFTAAGVALLVVGVRRRVARARWNREDDRRLLHPDGSAASDVHRTSNPHSGGIWPIAVGAVILILGLLHVLDLVATLHVAGAI
>NZ_CP013049.1|WP_162259894.1|5108145_5108283_+|hypothetical-protein
MAALAGQLLFFAMVAALIGGVVWAVAVMRKPRPPLEEADDEDEDW
>NZ_CP013049.1|WP_057138148.1|5119895_5120108_+|hypothetical-protein
MTTTTITTPLIVDGVPVLEVPPRTAAVMKSVSERSILRWIAEGKLPARRLPGGRQLRIAVADLTALGEPV
>NZ_CP013049.1|WP_126690961.1|5120183_5122406_+|hypothetical-protein
MTVPMTAVDASLTHDTPIAPATLQQWRPYIPEHIDPTASPAPGGHCECPTVAHIVLHVDGCVQGVSGRAQPYDPDLCGDYDLPLNKLVDAAELGAALRGITVGGLADVMRWEAEDRALDVHAAKSAYEAGVAEGESEAEALFETLRKRLPVEQYDAVLDGLDMNDPGQVLERLRAEVAALPAPFTVPPAPGAGQALTAAPDVADSSAAPEVEDDEEQEEVEPDRTIRDFDGTPPAADQIMKYPMPPIPAHVPPVEGAKTQPVEVLPPLANQWGHQNVAEEWIFSATPGLSHVAAAADARGVTRWGLLGTLLTRVAATIPPTVRLIPASRKVPTEAGATPAGTSINLYSIAVSPPSTGKTDTISAAAALIPGVRTVPPGTGEGMLKEFPRLSVDEDDSEGDGDGTAPKIETIETDAYPGSVLLESDEIDVFVGEMMRQGSKTTGWYRSMWMGGEIGNTVSDRDRRSFIAAHTYRFGIMLGAQPDAVAPMFNETSKGTPQRFMWLPAQQTIARGDYPSRLGIAPVYWFDESPSMIPSTGGQRPPVWIYPPKAATDALDRARWRAATANPMASPAAADRAAAIADRHAVLQQLKVSAVLAVLDGLDQPQDAHWYAAGAIMTVRRRVIHELVAESDRIKAEGKEAEGALNGVYRASSDAARDAERERHVSRCAARMMAGLVKASVAGQPPMTYGAAIRLLSGKKGAAGRSDRELYGRAALAVVRASPGVADTGTHVQWVGTAAI
>NZ_CP013049.1|WP_057138214.1|5123052_5123337_+|hypothetical-protein
MTLTAEKLTPADAAVGSLVHALAEHLDPDALTTAVQQALLAAEIHLGDAVYLSELVPDVIDGQVWHGEAVMPAAEALRVGMGYVAAALVAGATL
>NZ_CP013049.1|WP_065209208.1|5123463_5123709_+|hypothetical-protein
MLARTHAALDPARLSGAVTAALATAEITYGSVTLRAGDDDLLAVPSIGEVWVADDAEIPADEALRVGIAYVAAALAAGARL
>NZ_CP013049.1|WP_153995297.1|5123727_5123886_+|hypothetical-protein
MHATLFADEQVAAALRDARPADEAAVRRAQARAATALDAAFAWTRTVTPWER
>NZ_CP013049.1|WP_057138215.1|5124185_5124797_+|hypothetical-protein
MLNPATAGRTVVGLDLSLTGAGIAAFDLMTGGLDTAVHRSPAPMVGTLGAHVQRHRALVDGIVQQTVACDPALVVVEGLRFSVSAQDTSLSRRGFLWWAVVEGLVNAGAPVLEVTPSQIKMLATGNGGASKDMMVAEYALAWPDATRDKNTQDRADAAFAAALGAAYLRSPLLPFTVTGKRRKALAKLPAPSAPPRIAAAAVA
>NZ_CP013049.1|WP_057138151.1|5124823_5125093_+|glutaredoxin-family-protein
MTNATLFTQPGCGGCIFAAKDLTKAGVPYTERNVRTDEAAAEMVQELYREHREPGKVPETPVIVIDGEPYFGAVELHAYLRELRREAAA
>NZ_CP013049.1|WP_057138152.1|5125089_5125473_+|helix-turn-helix-domain-containing-protein
MSGTIRRPAPGGGTFITRPAAAELRGVTRRRIDSLIQGGELPAYQVSGRVMVLEADVLALELPTVPPDGWISRHAAAKVLGCTHRAVGLMVARGDLPAETINGRVYLREADVRKAATPRRVMPPRRR
>NZ_CP013049.1|WP_057138153.1|5128102_5128402_-|hypothetical-protein
MNETTWTQTAAEDVPPELLHEVRALLAEFEALDPSPRVQPGRDGAAGGTRRHGRRGGRIRSRLHRGAAGRGGGMTGPVYDDEDIRDDGEQWPDEERDRD
>NZ_CP013049.1|WP_057138154.1|5128459_5128813_-|glyoxalase/bleomycin-resistance/dioxygenase-family-protein
MKLSLIVLYVPQPTLDLTARFYGALLDAEPVAEKHGDGPQHWSVTGADGLVMELYPMGSRPHTSTRLEFQGADMDAAVQRLIDRAYALPERTRDGAGWWVSDPIGNTVVLLPEPTPS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013049_2	2.1\|5105899\|28\|NZ_CP013049\|CRISPRCasFinder	5105899-5105926	28	NZ_CP035424	Leisingera sp. NJS204 plasmid unnamed7, complete sequence	38441-38468	5	0.821
NZ_CP013049_2	2.1\|5105899\|28\|NZ_CP013049\|CRISPRCasFinder	5105899-5105926	28	NZ_CP038236	Leisingera sp. NJS201 plasmid unnamed2, complete sequence	9923-9950	5	0.821
NZ_CP013049_2	2.2\|5105953\|25\|NZ_CP013049\|CRISPRCasFinder	5105953-5105977	25	CP030179	Xanthomonas citri pv. punicae strain LMG 859 plasmid unnamed, complete sequence	20822-20846	5	0.8
NZ_CP013049_2	2.2\|5105953\|25\|NZ_CP013049\|CRISPRCasFinder	5105953-5105977	25	CP030179	Xanthomonas citri pv. punicae strain LMG 859 plasmid unnamed, complete sequence	143079-143103	5	0.8
NZ_CP013049_2	2.2\|5105953\|25\|NZ_CP013049\|CRISPRCasFinder	5105953-5105977	25	CP030160	Xanthomonas citri pv. punicae strain BD0022 plasmid unnamed, complete sequence	72056-72080	5	0.8
NZ_CP013049_2	2.2\|5105953\|25\|NZ_CP013049\|CRISPRCasFinder	5105953-5105977	25	CP030167	Xanthomonas citri pv. punicae strain LMG7504 plasmid unnamed1, complete sequence	71484-71508	5	0.8
NZ_CP013049_2	2.2\|5105953\|25\|NZ_CP013049\|CRISPRCasFinder	5105953-5105977	25	CP030170	Xanthomonas citri pv. punicae strain BD0025 plasmid unnamed, complete sequence	3602-3626	5	0.8
NZ_CP013049_2	2.2\|5105953\|25\|NZ_CP013049\|CRISPRCasFinder	5105953-5105977	25	CP030162	Xanthomonas citri pv. punicae strain BD0023 plasmid unnamed, complete sequence	52587-52611	5	0.8
NZ_CP013049_2	2.2\|5105953\|25\|NZ_CP013049\|CRISPRCasFinder	5105953-5105977	25	NZ_CP030165	Xanthomonas citri pv. punicae strain LMG7439 plasmid unnamed, complete sequence	75057-75081	5	0.8
NZ_CP013049_2	2.1\|5105899\|28\|NZ_CP013049\|CRISPRCasFinder	5105899-5105926	28	JQ809663	Stenotrophomonas phage Smp131, complete genome	10531-10558	6	0.786
NZ_CP013049_2	2.1\|5105899\|28\|NZ_CP013049\|CRISPRCasFinder	5105899-5105926	28	NZ_CP021083	Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence	41688-41715	6	0.786
NZ_CP013049_3	3.2\|5119277\|36\|NZ_CP013049\|CRISPRCasFinder,CRT	5119277-5119312	36	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3785897-3785932	7	0.806
NZ_CP013049_3	3.7\|5119586\|34\|NZ_CP013049\|CRT	5119586-5119619	34	NZ_CP051182	Thalassobius gelatinovorus strain NEB572 plasmid pAge77, complete sequence	30119-30152	8	0.765
NZ_CP013049_3	3.7\|5119586\|34\|NZ_CP013049\|CRT	5119586-5119619	34	NZ_CP044550	Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence	247075-247108	9	0.735
NZ_CP013049_3	3.7\|5119586\|34\|NZ_CP013049\|CRT	5119586-5119619	34	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	538608-538641	10	0.706
NZ_CP013049_3	3.7\|5119586\|34\|NZ_CP013049\|CRT	5119586-5119619	34	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1500317-1500350	10	0.706
NZ_CP013049_3	3.7\|5119586\|34\|NZ_CP013049\|CRT	5119586-5119619	34	NZ_CP042916	Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence	130398-130431	11	0.676

1. spacer 2.1|5105899|28|NZ_CP013049|CRISPRCasFinder matches to NZ_CP035424 (Leisingera sp. NJS204 plasmid unnamed7, complete sequence) position: , mismatch: 5, identity: 0.821

ccagca-gcgcctcgcaccgcagaagcct	CRISPR spacer
-catcgtgcgcctcgcaccgcaggagccc	Protospacer
 ** *. ****************.****.

2. spacer 2.1|5105899|28|NZ_CP013049|CRISPRCasFinder matches to NZ_CP038236 (Leisingera sp. NJS201 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.821

ccagca-gcgcctcgcaccgcagaagcct	CRISPR spacer
-catcgtgcgcctcgcaccgcaggagccc	Protospacer
 ** *. ****************.****.

3. spacer 2.2|5105953|25|NZ_CP013049|CRISPRCasFinder matches to CP030179 (Xanthomonas citri pv. punicae strain LMG 859 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

4. spacer 2.2|5105953|25|NZ_CP013049|CRISPRCasFinder matches to CP030179 (Xanthomonas citri pv. punicae strain LMG 859 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

5. spacer 2.2|5105953|25|NZ_CP013049|CRISPRCasFinder matches to CP030160 (Xanthomonas citri pv. punicae strain BD0022 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

6. spacer 2.2|5105953|25|NZ_CP013049|CRISPRCasFinder matches to CP030167 (Xanthomonas citri pv. punicae strain LMG7504 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

7. spacer 2.2|5105953|25|NZ_CP013049|CRISPRCasFinder matches to CP030170 (Xanthomonas citri pv. punicae strain BD0025 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

8. spacer 2.2|5105953|25|NZ_CP013049|CRISPRCasFinder matches to CP030162 (Xanthomonas citri pv. punicae strain BD0023 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

9. spacer 2.2|5105953|25|NZ_CP013049|CRISPRCasFinder matches to NZ_CP030165 (Xanthomonas citri pv. punicae strain LMG7439 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

gttgttccccacagcgccgagccgc	CRISPR spacer
accgttccccaccgcgccgagccgt	Protospacer
...********* ***********.

10. spacer 2.1|5105899|28|NZ_CP013049|CRISPRCasFinder matches to JQ809663 (Stenotrophomonas phage Smp131, complete genome) position: , mismatch: 6, identity: 0.786

ccagcagcgcctcgcaccgcagaagcct	CRISPR spacer
acagcagcgcatcgcaacgcagaagaac	Protospacer
 ********* ***** ********  .

11. spacer 2.1|5105899|28|NZ_CP013049|CRISPRCasFinder matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 6, identity: 0.786

ccagcagcgcctcgcaccgcagaagcct	CRISPR spacer
ccagcagcgcctcgcagcgcagcttctc	Protospacer
**************** *****   *..

12. spacer 3.2|5119277|36|NZ_CP013049|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.806

accgcatctcggtgatctgcaccgtcgacgccgtga	CRISPR spacer
gctgcatctcggtgatctgcatggtcgacgccggcg	Protospacer
.*.******************. **********  .

13. spacer 3.7|5119586|34|NZ_CP013049|CRT matches to NZ_CP051182 (Thalassobius gelatinovorus strain NEB572 plasmid pAge77, complete sequence) position: , mismatch: 8, identity: 0.765

ccccggccgctggctccggcacccgg---aagccgag	CRISPR spacer
tcctggccggtggctccggcacccggctttatcc---	Protospacer
.**.***** ****************    * **

14. spacer 3.7|5119586|34|NZ_CP013049|CRT matches to NZ_CP044550 (Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence) position: , mismatch: 9, identity: 0.735

ccccggccgctggctccggcacccggaagccgag	CRISPR spacer
cgcccgccgctggctccagcacccggccaccctc	Protospacer
* ** ************.********  .**

15. spacer 3.7|5119586|34|NZ_CP013049|CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 10, identity: 0.706

ccccggccgctggctccggcacccggaagccgag	CRISPR spacer
tcagcgccgccggcaccggcacccggaaggagcc	Protospacer
.*   *****.*** **************  *

16. spacer 3.7|5119586|34|NZ_CP013049|CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccccggccgctggctccggcacccggaagccgag	CRISPR spacer
tcacggccgatggctccggcacctggacctacac	Protospacer
.* ****** *************.***  .  *

17. spacer 3.7|5119586|34|NZ_CP013049|CRT matches to NZ_CP042916 (Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

ccccggccgctggctccggcacccggaagccgag	CRISPR spacer
tcagcgccgccggcaccggcacccggaaggaacc	Protospacer
.*   *****.*** **************  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2733914 : 2742452

Streptococcus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005068898.1\|2733914_2734586_-	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	4.9e-17	31.1
WP_005093596.1\|2734699_2735623_+	peptidylprolyl isomerase	A0A1V0SCU1	Indivirus	1.1e-08	31.6
WP_005091054.1\|2735624_2736494_+	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	5.8e-55	45.6
WP_005068903.1\|2736595_2738962_-	RelA/SpoT family protein	A0A291L9W9	Bordetella_phage	1.8e-13	38.4
WP_005082386.1\|2738992_2739526_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	8.1e-15	36.4
WP_005093597.1\|2739522_2741199_-	hypothetical protein	NA	NA	NA	NA
WP_005111391.1\|2741198_2742452_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.5e-22	28.6

DBSCAN-SWA_2

3332189 : 3349694

Mycobacterium_phage(81.25%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057137988.1\|3332189_3332744_-	hypothetical protein	A0A023ZXQ6	Mycobacterium_phage	8.9e-25	41.8
WP_057137989.1\|3332743_3334462_-	hypothetical protein	A0A023ZX29	Mycobacterium_phage	1.3e-263	73.5
WP_057137990.1\|3334458_3335565_-	hypothetical protein	A0A023ZWM1	Mycobacterium_phage	4.1e-146	63.2
WP_057137991.1\|3335564_3339224_-	hypothetical protein	A0A142F2F1	Mycobacterium_phage	3.0e-44	35.4
WP_057137993.1\|3339418_3339718_-	hypothetical protein	NA	NA	NA	NA
WP_057137994.1\|3339723_3340464_-	hypothetical protein	A0A023ZX24	Mycobacterium_phage	5.3e-33	37.1
WP_057137995.1\|3340438_3340729_-	hypothetical protein	NA	NA	NA	NA
WP_016895916.1\|3340744_3341287_-	hypothetical protein	A0A023ZYD0	Mycobacterium_phage	4.3e-64	66.1
WP_057137996.1\|3341307_3341730_-	hypothetical protein	W8EG37	Mycobacterium_phage	3.1e-17	45.2
WP_057137997.1\|3341726_3341969_-	hypothetical protein	A0A2K9VEX1	Mycobacterium_phage	8.1e-15	53.2
WP_057137998.1\|3341968_3342655_-	hypothetical protein	A0A2K9VET7	Mycobacterium_phage	2.5e-37	43.0
WP_016895912.1\|3342648_3343044_-	hypothetical protein	A0A023ZWL1	Mycobacterium_phage	1.1e-16	45.5
WP_057137999.1\|3343050_3343476_-	hypothetical protein	NA	NA	NA	NA
WP_016895910.1\|3343472_3344417_-	hypothetical protein	A0A142KC12	Gordonia_phage	3.3e-104	59.2
WP_016892119.1\|3344449_3344902_-	hypothetical protein	A0A142KBL3	Gordonia_phage	2.8e-45	70.3
WP_057138000.1\|3344903_3346166_-	peptidase	A0A1B3AZ47	Gordonia_phage	2.5e-70	45.4
WP_057138001.1\|3346165_3347569_-	hypothetical protein	A0A023ZWK5	Mycobacterium_phage	3.1e-146	59.5
WP_057138002.1\|3347620_3349294_-	hypothetical protein	A0A2K9VEU8	Mycobacterium_phage	7.4e-123	46.0
WP_052572199.1\|3349250_3349694_-	hypothetical protein	A0A023ZWK1	Mycobacterium_phage	3.7e-13	39.5

DBSCAN-SWA_3

3354262 : 3367380

Mycobacterium_phage(45.45%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057138008.1\|3354262_3354940_-	hypothetical protein	A0A1B3AYN8	Gordonia_phage	6.1e-60	57.7
WP_016892133.1\|3354982_3355321_-	WhiB family transcriptional regulator	A0A2H4JGM8	uncultured_Caudovirales_phage	1.9e-06	39.2
WP_057138009.1\|3355321_3355939_-	hypothetical protein	A0A142KBT1	Gordonia_phage	1.0e-29	38.1
WP_052572192.1\|3355935_3356178_-	hypothetical protein	NA	NA	NA	NA
WP_057138010.1\|3356174_3356543_-	hypothetical protein	NA	NA	NA	NA
WP_057138012.1\|3357315_3358176_-	hypothetical protein	E0YQ62	Mycobacterium_phage	1.2e-65	56.5
WP_065209205.1\|3358168_3358510_-	DUF4326 domain-containing protein	A0A142K9N0	Gordonia_phage	2.2e-26	43.1
WP_057138013.1\|3358675_3359818_-	hypothetical protein	A0A0S2SXP3	Bacillus_phage	5.7e-34	37.9
WP_057138014.1\|3359814_3360795_-	phage Gp37/Gp68 family protein	A0A0A7RVQ8	Mycobacterium_phage	2.8e-106	58.5
WP_131807238.1\|3360787_3361120_-	hypothetical protein	NA	NA	NA	NA
WP_074342987.1\|3361131_3361341_-	hypothetical protein	NA	NA	NA	NA
WP_057138016.1\|3361421_3361826_+	hypothetical protein	NA	NA	NA	NA
WP_057138017.1\|3361942_3363322_-	DNA cytosine methyltransferase	B5U5L6	Mycobacterium_virus	3.2e-148	61.9
WP_057138018.1\|3363318_3363711_-	hypothetical protein	A0A222ZMC2	Mycobacterium_phage	4.0e-19	46.2
WP_057138019.1\|3363710_3364289_-	hypothetical protein	A0A1L6BYL0	Mycobacterium_phage	1.1e-28	52.9
WP_016895884.1\|3364285_3364546_-	hypothetical protein	NA	NA	NA	NA
WP_057138020.1\|3364542_3364959_-	hypothetical protein	NA	NA	NA	NA
WP_057138021.1\|3364946_3365444_-	hypothetical protein	NA	NA	NA	NA
WP_016892150.1\|3365923_3366163_-	hypothetical protein	NA	NA	NA	NA
WP_057138023.1\|3366162_3367380_-	hypothetical protein	W8EAF4	Mycobacterium_phage	1.9e-75	43.9

DBSCAN-SWA_4

3733428 : 3744619

Mycobacterium_phage(64.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052541729.1\|3733428_3734205_+	antirepressor	A0A142K8T5	Gordonia_phage	7.0e-52	46.8
WP_016341885.1\|3734307_3734694_+	hypothetical protein	NA	NA	NA	NA
WP_052541730.1\|3734690_3735020_+	hypothetical protein	NA	NA	NA	NA
WP_057138056.1\|3735016_3735400_+	DUF3850 domain-containing protein	A0A1B1SGE4	Mycobacterium_phage	6.0e-12	41.2
WP_052541731.1\|3735396_3735747_+	hypothetical protein	J7KDJ6	Mycobacterium_virus	1.1e-23	51.9
WP_052541732.1\|3735743_3736043_+	hypothetical protein	NA	NA	NA	NA
WP_049233925.1\|3736030_3736255_+	hypothetical protein	A0A2H4GST7	Mycobacterium_phage	1.7e-06	56.1
WP_049233928.1\|3736251_3737154_+	recE	A0A2D1G8R5	Mycobacterium_phage	3.9e-78	51.2
WP_057138058.1\|3737150_3738272_+	hypothetical protein	A0A2P1CGD3	Mycobacterium_phage	7.2e-98	69.3
WP_057138060.1\|3738274_3738616_+	hypothetical protein	G8I4S2	Mycobacterium_phage	5.8e-35	67.3
WP_057138062.1\|3738744_3739269_+	hypothetical protein	A0A0F6WF12	Mycobacterium_phage	1.7e-41	53.1
WP_017555356.1\|3739265_3739682_+	hypothetical protein	NA	NA	NA	NA
WP_057138063.1\|3739678_3740203_+	hypothetical protein	A0A1J0MDV9	Mycobacterium_phage	2.2e-09	30.3
WP_057138065.1\|3740199_3741219_+	site-specific DNA-methyltransferase	A0A166YCK5	Gordonia_phage	4.6e-128	64.6
WP_057138067.1\|3741525_3742665_+	hypothetical protein	I1ZBF8	Salisaeta_icosahedral_phage	9.7e-34	34.2
WP_057138069.1\|3742664_3743033_+	hypothetical protein	G8I4T1	Mycobacterium_phage	4.4e-52	80.2
WP_057138070.1\|3743112_3744024_+	hypothetical protein	A0A1B3B1T0	Gordonia_phage	1.3e-41	62.6
WP_057138071.1\|3744093_3744276_+	hypothetical protein	NA	NA	NA	NA
WP_153995300.1\|3744460_3744619_+	hypothetical protein	W8EC86	Mycobacterium_phage	4.0e-07	55.6

DBSCAN-SWA_5

3855244 : 3860476

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057138076.1\|3855244_3856216_+	hypothetical protein	A0A059VL91	Mycobacterium_phage	1.6e-24	55.5
WP_057138077.1\|3856238_3856694_+	hypothetical protein	NA	NA	NA	NA
WP_057138078.1\|3856713_3857076_+	hypothetical protein	A0A1C9EGR9	Mycobacterium_phage	3.1e-50	82.4
WP_057138079.1\|3857218_3857887_+	M15 family metallopeptidase	A0A0K1LIU2	Mycobacterium_phage	6.0e-92	72.1
WP_057138080.1\|3857883_3859059_+	hypothetical protein	A0A1X9SFG9	Mycobacterium_phage	1.4e-123	70.9
WP_005061762.1\|3859198_3859495_+	hypothetical protein	NA	NA	NA	NA
WP_005061763.1\|3859491_3859872_+	DUF2746 domain-containing protein	G1JV83	Mycobacterium_phage	7.5e-07	35.8
WP_005061765.1\|3859936_3860476_-	hypothetical protein	A0A142K7G5	Mycobacterium_phage	4.9e-28	57.0

DBSCAN-SWA_6

4170664 : 4180156

Burkholderia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005112210.1\|4170664_4171789_-	acyltransferase	A9YX16	Burkholderia_phage	2.3e-19	28.4
WP_005085927.1\|4171785_4173054_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	3.3e-06	40.3
WP_005062157.1\|4173103_4173904_-	macrocin O-methyltransferase	A0A2R8FDY2	Brazilian_cedratvirus	4.9e-56	52.6
WP_017206146.1\|4174120_4174855_-	class I SAM-dependent methyltransferase	Q98VI8	Paramecium_bursaria_Chlorella_virus	4.0e-12	30.2
WP_005112211.1\|4175045_4176176_-	acyltransferase	A9YX16	Burkholderia_phage	4.1e-16	27.6
WP_005085923.1\|4176343_4177405_-	NAD-dependent epimerase/dehydratase family protein	A0A0E3IB24	Synechococcus_phage	4.1e-18	26.1
WP_005094865.1\|4177567_4178827_-	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	1.6e-05	39.2
WP_005062166.1\|4179289_4180156_+	glucose-1-phosphate thymidylyltransferase RfbA	H9NC64	Sphingomonas_phage	2.8e-89	57.5

DBSCAN-SWA_7

5139108 : 5154019

Mycobacterium_phage(92.31%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005070937.1\|5139108_5142735_-	hypothetical protein	A0A0B5H802	Mycobacterium_phage	3.7e-204	43.3
WP_005070934.1\|5142749_5143112_-	hypothetical protein	A0A2P1JR40	Mycobacterium_phage	1.7e-29	62.6
WP_005061733.1\|5143173_5143620_-	hypothetical protein	A0A0A7RVK9	Mycobacterium_phage	1.3e-26	43.0
WP_057138160.1\|5143719_5144799_-	hypothetical protein	G1JTF7	Mycobacterium_virus	5.4e-58	44.4
WP_005061729.1\|5144889_5145300_-	hypothetical protein	NA	NA	NA	NA
WP_005061728.1\|5145299_5145659_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_017207407.1\|5145658_5146066_-	hypothetical protein	NA	NA	NA	NA
WP_005061723.1\|5146065_5146428_-	hypothetical protein	A0A218M9J6	Mycobacterium_phage	3.2e-31	58.3
WP_005061721.1\|5146432_5146855_-	hypothetical protein	NA	NA	NA	NA
WP_005061719.1\|5146854_5147766_-	hypothetical protein	A0A2K9VEV5	Mycobacterium_phage	3.4e-138	80.7
WP_005061716.1\|5147782_5148160_-	hypothetical protein	W8EH90	Mycobacterium_phage	9.6e-47	82.4
WP_005123185.1\|5150448_5151861_-\|terminase	terminase	R4TCB6	Mycobacterium_phage	3.7e-152	57.2
WP_057138161.1\|5152009_5152411_-	hypothetical protein	A0A023ZWK1	Mycobacterium_phage	1.8e-06	33.0
WP_057138162.1\|5152571_5153024_-	AAA family ATPase	A0A1D8EX78	Mycobacterium_phage	2.2e-53	66.0
WP_057138219.1\|5153020_5153284_-	hypothetical protein	A0A1D8EX45	Mycobacterium_phage	3.7e-29	71.3
WP_057138163.1\|5153390_5153744_-	hypothetical protein	A0A088F7V7	Mycobacterium_phage	1.8e-15	50.7
WP_162259902.1\|5153740_5154019_-	hypothetical protein	G3M5G1	Mycobacterium_phage	1.1e-23	58.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013049

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection