CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP012918	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p4, complete sequence	0 crisprs	NA	0	0	2
NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	0 crisprs	csa3,RT	0	0	2
NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	3 crisprs	csa3	0	9	0
NZ_CP012919	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p5, complete sequence	0 crisprs	NA	0	0	1
NZ_CP012914	Azospirillum brasilense strain Sp 7 chromosome, complete genome	4 crisprs	DEDDh,DinG,csa3,cas3,cas2,cas1,cas4,cas7b,cas8c,cas5,WYL	2	6	2
NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

24238 : 66440

Burkholderia_virus(28.57%)

integrase,transposase

attL 45154:45172|attR 69411:69429

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_059399752.1\|24238_25639_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_059399753.1\|25973_26669_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	4.1e-19	38.7
WP_051140123.1\|27217_27649_-	hypothetical protein	NA	NA	NA	NA
WP_109111641.1\|27789_28928_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.2e-26	33.8
WP_035671909.1\|28991_29387_-	hypothetical protein	NA	NA	NA	NA
WP_158283101.1\|29618_30917_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_146206565.1\|30913_31798_+	hypothetical protein	NA	NA	NA	NA
WP_146206564.1\|31892_32399_+	hypothetical protein	NA	NA	NA	NA
WP_082413765.1\|32843_33224_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_158283147.1\|34220_36308_-	AAA family ATPase	NA	NA	NA	NA
WP_059399811.1\|36499_38167_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_035684106.1\|38157_39090_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_035684109.1\|39093_40542_+	TniQ family protein	NA	NA	NA	NA
WP_156355545.1\|40634_41243_-	hypothetical protein	NA	NA	NA	NA
WP_035684117.1\|41444_42248_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_035684120.1\|42262_43015_-	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	7.1e-09	26.9
WP_035684123.1\|43018_44170_-	thiolase family protein	NA	NA	NA	NA
WP_035684127.1\|44166_44571_-	OB-fold domain-containing protein	NA	NA	NA	NA
WP_059399760.1\|44804_45641_-	SDR family NAD(P)-dependent oxidoreductase	W8CYX9	Bacillus_phage	4.8e-06	40.0
45154:45172	attL	NA	NA	NA	NA
WP_035684131.1\|45902_46787_+	transcriptional regulator GcvA	Q6JIH3	Burkholderia_virus	8.7e-22	30.4
WP_081650398.1\|46856_48215_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.1e-51	34.4
WP_059399761.1\|48507_49398_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_035684134.1\|49444_50659_+	CoA transferase	NA	NA	NA	NA
WP_059399762.1\|50688_52125_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_035684137.1\|52147_52567_+	PaaI family thioesterase	NA	NA	NA	NA
WP_035684140.1\|52642_53527_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_146206586.1\|53750_54170_+	response regulator transcription factor	NA	NA	NA	NA
WP_081650399.1\|54299_54833_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_081650400.1\|54869_55808_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_035684149.1\|55924_56530_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_105217750.1\|56677_57316_-	Isoquinoline 1-oxidoreductase subunit	NA	NA	NA	NA
WP_059399764.1\|57318_59523_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_059399765.1\|59524_60001_-	(2Fe-2S)-binding protein	A0A0P0IVM8	Acinetobacter_phage	1.4e-05	31.5
WP_035684158.1\|60368_63311_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_059399766.1\|63399_64203_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_081650200.1\|64640_66440_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
69411:69429	attR	NA	NA	NA	NA

DBSCAN-SWA_2

115292 : 137321

Microcystis_phage(14.29%)

integrase,transposase

attL 112402:112418|attR 121949:121965

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
112402:112418	attL	NA	NA	NA	NA
WP_059399779.1\|115292_116975_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_059399780.1\|117153_118023_+	DUF1403 family protein	NA	NA	NA	NA
WP_035683687.1\|118074_118965_-	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	2.4e-27	38.2
WP_081650378.1\|119071_119926_-	formylglycine-generating enzyme family protein	A0A7H6	Microcystis_virus	1.3e-43	42.3
WP_059399782.1\|121931_122231_+	hypothetical protein	NA	NA	NA	NA
121949:121965	attR	NA	NA	NA	NA
WP_059399783.1\|122227_123061_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.0e-28	32.4
WP_081650376.1\|123290_123875_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_051141049.1\|123842_124361_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.2e-15	38.4
WP_059399784.1\|124546_125830_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.8e-45	36.4
WP_059399785.1\|125826_126699_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.9e-51	46.2
WP_146206581.1\|126619_127027_-	hypothetical protein	NA	NA	NA	NA
WP_035683484.1\|129723_129990_+	BrnT family toxin	NA	NA	NA	NA
WP_051141032.1\|129982_130360_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA
WP_035683464.1\|130479_130728_-\|transposase	transposase	NA	NA	NA	NA
WP_158283143.1\|130788_130893_-	hypothetical protein	NA	NA	NA	NA
WP_059399787.1\|132150_133170_+	replication initiation protein	NA	NA	NA	NA
WP_051141031.1\|133213_133861_+	ParA family protein	A0A0A8IL09	Aurantimonas_phage	3.4e-15	30.8
WP_059399788.1\|133847_134609_+	hypothetical protein	NA	NA	NA	NA
WP_155903770.1\|134658_135537_+	hypothetical protein	NA	NA	NA	NA
WP_081650364.1\|135822_136227_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_167555950.1\|136889_137321_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012915

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

342447 : 383769

Enterobacteria_phage(14.29%)

transposase,integrase

attL 374905:374925|attR 393848:393868

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035683708.1\|342447_343560_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_059399153.1\|343989_344619_-\|transposase	transposase	NA	NA	NA	NA
WP_035683705.1\|346139_346487_+	peptidoglycan-binding protein	NA	NA	NA	NA
WP_107685989.1\|346649_347204_+	redoxin domain-containing protein	NA	NA	NA	NA
WP_035683703.1\|347375_347669_-	hypothetical protein	NA	NA	NA	NA
WP_137165208.1\|348100_348349_+	hypothetical protein	NA	NA	NA	NA
WP_155903790.1\|348464_348611_+	hypothetical protein	NA	NA	NA	NA
WP_059399156.1\|348618_349326_+	YmfQ family protein	Q8W614	Enterobacteria_phage	7.7e-21	33.7
WP_051141053.1\|349352_351464_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_051141052.1\|351492_352038_+	hypothetical protein	NA	NA	NA	NA
WP_035683699.1\|352142_352616_+	hypothetical protein	NA	NA	NA	NA
WP_167555916.1\|352603_352780_+	hypothetical protein	NA	NA	NA	NA
WP_158283150.1\|352813_353326_+	peptidoglycan-binding protein	NA	NA	NA	NA
WP_137165207.1\|353495_354089_+	hypothetical protein	NA	NA	NA	NA
WP_079285348.1\|354134_355250_+	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	3.1e-16	26.2
WP_035683696.1\|355678_356377_+	hypothetical protein	NA	NA	NA	NA
WP_051141051.1\|356541_357075_+	hypothetical protein	NA	NA	NA	NA
WP_051141050.1\|357083_357353_+	YgjV family protein	NA	NA	NA	NA
WP_059399157.1\|357401_358472_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_035675751.1\|359040_359859_+	hypothetical protein	A0A0P1KLE3	Acinetobacter_phage	3.2e-10	38.0
WP_059399413.1\|360075_361416_-\|transposase	IS1380 family transposase	A0A1X9I6F6	Streptococcus_phage	3.0e-26	26.3
WP_035675754.1\|363007_364750_+	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	1.4e-36	27.5
WP_035675755.1\|364746_365682_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_035675757.1\|365678_367064_+	restriction endonuclease subunit S	A0A1V0SLK8	Klosneuvirus	4.0e-05	22.1
WP_035675758.1\|367060_370192_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_137165206.1\|370522_371137_-	hypothetical protein	NA	NA	NA	NA
WP_137165205.1\|371162_371537_+	hypothetical protein	NA	NA	NA	NA
WP_035675761.1\|371585_372281_+	hypothetical protein	NA	NA	NA	NA
WP_145611146.1\|372392_372908_-	hypothetical protein	NA	NA	NA	NA
WP_137165204.1\|373168_373402_-	hypothetical protein	NA	NA	NA	NA
WP_035675766.1\|373414_373771_-	hypothetical protein	NA	NA	NA	NA
WP_059399159.1\|373767_374487_-	hypothetical protein	NA	NA	NA	NA
WP_059399160.1\|374581_375514_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
374905:374925	attL	NA	NA	NA	NA
WP_155903515.1\|375971_376139_+	hypothetical protein	NA	NA	NA	NA
WP_035675771.1\|376201_376885_-	recombinase family protein	A0A1L2JY12	Aeribacillus_phage	2.4e-27	35.3
WP_137165203.1\|377111_377873_-	hypothetical protein	NA	NA	NA	NA
WP_079285352.1\|377910_378456_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_079285353.1\|378799_379336_-	AAA family ATPase	NA	NA	NA	NA
WP_137165202.1\|379366_380167_-	hypothetical protein	NA	NA	NA	NA
WP_079285354.1\|380160_380553_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_137165201.1\|380521_381343_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_059399161.1\|382020_383769_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
393848:393868	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1238503 : 1247274

Emiliania_huxleyi_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035678629.1\|1238503_1239952_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	5.2e-24	26.6
WP_059399307.1\|1240143_1240722_-	cold shock domain-containing protein	A0A1W6JNX5	Morganella_phage	7.7e-11	49.2
WP_059399308.1\|1240966_1241464_-	YchJ family protein	G9E3U3	Emiliania_huxleyi_virus	5.4e-05	62.2
WP_079285416.1\|1241621_1242410_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_035678617.1\|1242406_1243081_+	ribonuclease HII	D2TEQ2	Emiliania_huxleyi_virus	1.1e-19	35.6
WP_035678616.1\|1243171_1244257_+	site-specific DNA-methyltransferase	A0A1W6JJW1	Lactococcus_phage	1.5e-31	34.6
WP_035678614.1\|1244348_1244774_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_079285417.1\|1244778_1247274_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	7.2e-05	36.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP012917

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP012916

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012916_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012916_1

153884-154085

Orphan

Consensus_repeat	Method
GAGACGCTGACCGGCGGCATCGGCACCGACGTGGTGACGCTGGGCT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP012916_1

>merge|NZ_CP012916|1|153884-154085|PILER-CR
GAGACGCTGACCGGCGGCATCGGCACCGACGTGGTGACGCTGGGCTCCCTTGGGAACACGATGCTGGTGGGCGGCGTCGAGACGCTGACCGGCGGCATCGGCACTGACGTGGTGACGCTGGGCTCCCTTGGGAACACGATGCAGGTCGACGGCGTCGAGACGCTGACCGGTGGCACCGGCACCGACGTGGTGACGCTGGGCA

>NZ_CP012916|1|1|153884-154085|PILER-CR
GAGACGCTGACCGGCGGCATCGGCACCGACGTGGTGACGCTGGGCT	CCCTTGGGAACACGATGCTGGTGGGCGGCGTC
GAGACGCTGACCGGCGGCATCGGCACTGACGTGGTGACGCTGGGCT	CCCTTGGGAACACGATGCAGGTCGACGGCGTC
GAGACGCTGACCGGTGGCACCGGCACCGACGTGGTGACGCTGGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012916.1\|WP_059399471.1\|136437_138141_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP012916.1\|WP_051140751.1\|175761_176640_-\|triphosphoribosyl-dephospho-CoA-synthase	unknown	unknown	gnl\|CDD\|376637
NZ_CP012916.1\|WP_035680320.1\|168801_169635_+\|dihydrofolate-reductase-family-protein	unknown	unknown	gnl\|CDD\|224896
NZ_CP012916.1\|WP_079285675.1\|170150_170489_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012916.1\|WP_035680230.1\|141594_142698_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP012916.1\|WP_079285668.1\|172325_173423_-\|S-layer-protein	unknown	unknown	gnl\|CDD\|163144
NZ_CP012916.1\|WP_162471583.1\|175172_175700_-\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|378034
NZ_CP012916.1\|WP_035680235.1\|143930_144701_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NZ_CP012916.1\|WP_107685976.1\|132944_134393_+\|dihydropyrimidinase	unknown	unknown	gnl\|CDD\|184033
NZ_CP012916.1\|WP_035680329.1\|171348_172320_-\|quinoprotein-relay-system-zinc-metallohydrolase-2	unknown	unknown	gnl\|CDD\|275352
NZ_CP012916.1\|WP_035680334.1\|174459_175167_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240074
NZ_CP012916.1\|WP_014242213.1\|169779_169860_-\|pyrroloquinoline-quinone-precursor-peptide-PqqA	unknown	unknown	gnl\|CDD\|273976
NZ_CP012916.1\|WP_059399469.1\|134438_135851_+\|amidase	unknown	unknown	gnl\|CDD\|223232
NZ_CP012916.1\|WP_079285676.1\|173426_174425_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|224734
NZ_CP012916.1\|WP_035680232.1\|142728_143805_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270307
NZ_CP012916.1\|WP_035680326.1\|170513_171344_-\|quinoprotein-dehydrogenase-associated-SoxYZ-like-carrier	unknown	unknown	gnl\|CDD\|275350
NZ_CP012916.1\|WP_059399470.1\|135968_136322_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377736
NZ_CP012916.1\|WP_059399472.1\|138259_139789_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341257
NZ_CP012916.1\|WP_035680238.1\|144880_145765_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP012916.1\|WP_059399473.1\|139828_141598_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224097

Protein	Function_ID	Function_description	E-value
NZ_CP012916.1\|WP_059399471.1\|136437_138141_-\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.00416e-37
NZ_CP012916.1\|WP_051140751.1\|175761_176640_-\|triphosphoribosyl-dephospho-CoA-synthase	gnl\|CDD\|376637	pfam01874, CitG, ATP:dephospho-CoA triphosphoribosyl transferase. The citG gene is found in a gene cluster with citrate lyase subunits. The function of the CitG protein was elucidated as ATP:dephospho-CoA triphosphoribosyl transferase.	1.51378e-67
NZ_CP012916.1\|WP_035680320.1\|168801_169635_+\|dihydrofolate-reductase-family-protein	gnl\|CDD\|224896	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism].	8.27898e-18
NZ_CP012916.1\|WP_035680230.1\|141594_142698_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.9631e-149
NZ_CP012916.1\|WP_079285668.1\|172325_173423_-\|S-layer-protein	gnl\|CDD\|163144	TIGR03123, one_C_unchar_1, probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages. [Central intermediary metabolism, One-carbon metabolism].	8.37862e-108
NZ_CP012916.1\|WP_162471583.1\|175172_175700_-\|formaldehyde-activating-enzyme	gnl\|CDD\|378034	pfam08714, Fae, Formaldehyde-activating enzyme (Fae). Formaldehyde-activating enzyme is an enzyme required for energy metabolism and formaldehyde detoxification. It catalyzes the condensation of formaldehyde and tetrahydromethanopterin to methylene tetrahydromethanopterin.	2.03737e-96
NZ_CP012916.1\|WP_035680235.1\|143930_144701_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	2.53008e-55
NZ_CP012916.1\|WP_107685976.1\|132944_134393_+\|dihydropyrimidinase	gnl\|CDD\|184033	PRK13404, PRK13404, dihydropyrimidinase; Provisional.	0
NZ_CP012916.1\|WP_035680329.1\|171348_172320_-\|quinoprotein-relay-system-zinc-metallohydrolase-2	gnl\|CDD\|275352	TIGR04559, metallo-beta-lactamase_family_protein, quinoprotein relay system zinc metallohydrolase 2. By homology, members are Zn metallohydrolases in the same family as the SoxH protein associated with sulfate metabolism, Bacillus cereus beta-lactamase II (see PDB:1bc2), and, more distantly, hydroxyacylglutathione hydrolase (glyoxalase II). All members occur in genomes with both PQQ biosynthesis and a PQQ-dependent (quinoprotein) dehydrogenase that has a motif of two consecutive Cys residues (see TIGR03075). The Cys-Cys motif is associated with electron transfer by specialized cytochromes such as c551. All these genomes also include a fusion protein (TIGR04557) whose domains resemble SoxY and SoxZ from thiosulfate oxidation. A conserved Cys in this fusion protein aligns to the Cys residue in SoxY that carries sulfur cycle intermediates. In many genomes, the genes for PQQ biosynthesis enzymes, PQQ-dependent enzymes, their associated cytochromes, and members of this family are clustered. Note that one to three closely related Zn metallohydrolases may occur; this family represents a specific clade among them. Some members of this family have a short additional N-terminal domain with four conserved Cys residues. [Unknown function, Enzymes of unknown specificity].	8.4779e-153
NZ_CP012916.1\|WP_035680334.1\|174459_175167_+\|hypothetical-protein	gnl\|CDD\|240074	cd04723, HisA_HisF, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.	7.5783e-63
NZ_CP012916.1\|WP_014242213.1\|169779_169860_-\|pyrroloquinoline-quinone-precursor-peptide-PqqA	gnl\|CDD\|273976	TIGR02107, Coenzyme_PQQ_synthesis_protein_A, coenzyme PQQ precursor peptide PqqA. This model describes a very small protein, coenzyme PQQ biosynthesis protein A, which is smaller than 25 amino acids in many species. It is proposed to serve as a peptide precursor of coenzyme pyrrolo-quinoline-quinone (PQQ), with Glu and Tyr of a conserved motif Glu-Xxx-Xxx-Xxx-Tyr becoming part of the product. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0.00343478
NZ_CP012916.1\|WP_059399469.1\|134438_135851_+\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	5.92093e-130
NZ_CP012916.1\|WP_079285676.1\|173426_174425_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|224734	COG1821, COG1821, Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only].	1.76255e-32
NZ_CP012916.1\|WP_035680232.1\|142728_143805_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270307	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic binding domain that serves as the primary high-affinity receptor of an uncharacterized ABC-type polyamine transporter from Rhodopseudomonas palustris Cga009 and related proteins from other bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.42693e-85
NZ_CP012916.1\|WP_035680326.1\|170513_171344_-\|quinoprotein-dehydrogenase-associated-SoxYZ-like-carrier	gnl\|CDD\|275350	TIGR04557, hypothetical_protein, quinoprotein dehydrogenase-associated SoxYZ-like carrier. Members of this family are fusion proteins, with the N-terminal region similar to the sulfur oxidation protein SoxY (TIGR04488) and the C-terminal region similar to sulfur oxidation protein SoxZ (TIGR04490). Members occur exclusively in species with PQQ-dependent enzymes that have a Cys-Cys motif (TIGR03075) for electron transfer to c550 family cytochrome. By homology to the sulfur moiety-binding subunit SoxY, we predict the conserved Cys in the Gly-Gly-Cys motif binds some unknown adduct.	1.42837e-90
NZ_CP012916.1\|WP_059399470.1\|135968_136322_-\|hypothetical-protein	gnl\|CDD\|377736	pfam06938, DUF1285, Protein of unknown function (DUF1285). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. The structures revealed a conserved core with domain duplication and a superficial similarity of the C-terminal domain to pleckstrin homology-like folds. The conservation of the domain- interface indicates a potential binding site that is likely to involve a nucleotide-based ligand, with genome-context and gene-fusion analyses additionally supporting a role for this family in signal transduction, possibly during oxidative stress.	0.00787321
NZ_CP012916.1\|WP_059399472.1\|138259_139789_-\|AMP-binding-protein	gnl\|CDD\|341257	cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins.	3.41042e-145
NZ_CP012916.1\|WP_035680238.1\|144880_145765_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.63109e-61
NZ_CP012916.1\|WP_059399473.1\|139828_141598_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	3.52556e-67

>NZ_CP012916.1|WP_035680238.1|144880_145765_+|helix-turn-helix-domain-containing-protein
MAPRRPSSRQSDTESATAVADASVKEGGAARAGDPLMVMSVEKAFRVLNAFDAARPTMSLTQIASIVGLDKSAAQRFTHTLEKLGYLHKDPETKRFELTVKTLDLGHHYLRGNGLLERSMPYLMHLSKTTEETINLTMLDDTEIVFVSRFMSRHVLNTDVVLGMRMPAYCTAPGVAMLSRMPIEEAVHLIDRMDLHPYTPNTTWKREDLLAKIERSADLGYATAFEEYYHGDLSIAAAVVGPAGAPIGAINIAVSRSRFTPQEAEERFAPLVVAASSSISTIGRPAPPRKNGRR
>NZ_CP012916.1|WP_035680235.1|143930_144701_-|enoyl-CoA-hydratase/isomerase-family-protein
MFKFILTEVRGPVGIITLNRPEILNAWNAAMRDELVVAFEQFENQDGVRAIILTGAGDRAFGAGQDLNETKTFDADRAEEWVAEWERLYHRMRTLSKPLIIALNGVAAGSAFQVALLGDFRIGHAGVRMGQPEINSGIASTTGPWIMKEMIGLARTMDLTLSGRLMDAEESHRIGLINRIVPQDRVMAESLALAEELAAKPPVAMRLDKQRFREMTEAGFRDALAAGVRIQREAYASGEPARMMEEFLAKRAAKRA
>NZ_CP012916.1|WP_035680232.1|142728_143805_-|polyamine-ABC-transporter-substrate-binding-protein
MSKTSGFSMGRRSLMKGAAGVALGATLPAGLLRPAFAATQQITVADPGGPYSPAFRKSFYDPFEKATGIKVVNVAREAEPTAQFKAIVETKSYTWDVCTLTLSARDILMKQNLLEPLNFAAADVPGLMPDSLTSHWMGTDVYSTILGYRADKFASNAPQSWADFWNVEKFPGRRSLRKNPIDTLEQALLADGVPLDQLYPLDVDRAFKALDRIKPHVAVWWTGGAQSSQLIQSGEVDMIALWNARAQAVIDGGAPVKINWNQGLYSIEGWGIPRGNPRADAARQFIKFCADPARQAVFTEVLAYGPTNLDAYKSIPKERAPALPTFEDNLKVMTIAKEDWWGANRAKMNERFNAWILG
>NZ_CP012916.1|WP_035680230.1|141594_142698_-|ABC-transporter-ATP-binding-protein
MLSPLAQARTAPVQAGAAATPKLLVDGLTKRYGAITALEPTRLEVPAGEFLTLLGPSGSGKTTLLQMICGLVEPSGGRILIDGQDETRTPVHKRDIGLVFQHYALFPHLTVAENIGFPLRMRGVAPADLTRRVKEALEMVHLGHLAGRFPKELSGGQQQRVALARCFVYQPSVILMDEPLGALDKKLREHMQYEIKRLHRETGATIIYVTHDQEEALAMSDRICLMNHARIEQLGTPHDIYARPKTAFAADFIGVSNIFRGQVRRDGSGAPMLVTGNGSFRLSADTPDSQDGTLVVRPEQLDIDGEGDNEVRGEVVDTVYAGSETRVLVSLGGEETITVRLRRGTAPPRLGEVVAVRWRADAGVLVS
>NZ_CP012916.1|WP_059399473.1|139828_141598_-|ABC-transporter-permease-subunit
MSAATLNHDGAFAAARRRLRFGPLWLAAPGLAFLAIFFLFPVLRLLGLSVQDLETSAWTGDHYARIVATDVYFRVLMSTFRIAGLTALLSLLFGYPLAYWLAQLPERQRGLAILAVMVPFWTSYLVKTFAWMVILGRTGVINQILSGTGMSPLPLLHNEFGVMAGMVHAMLPLAVLTMLPVMTTLDRRLVQAAETLGAPPANAFWLVYFQLSLPGVAAAGLLTFISSLGFFIVPALLGGPQQTMLAQLIITQIQEMLNWAFAGALATFMLVAALVTCWVYDRLFGLSSLSGETSGRTGGGQGRLREAGMGILSALAKASTALGGPLGRLLGPKVMDRLLPLYSTAVIVFLVAPALVVVPIAFTTSPFLDFPPPGYGLEWFRVYFNSDLWVSATIRSFAVAFATAVLATLVAGLAALALARSSSRWRGAIFAFFLAPMIVPRIVIAVGLFYLFAQIGLVATDLGLIIGHTVLALPFAFVAISAVVKGHDWRLDQAAATLGANRFRTLMLVTVPLIRGGLVAAFLFAFITSFDELTVAIFVSGGVKTTLPKQMWDDMILQLNPTLAAVSVVVFAIVMALLLMAEWLRRPAR
>NZ_CP012916.1|WP_059399472.1|138259_139789_-|AMP-binding-protein
MSDFEEGFVRLFTQAARTGRARLFARFNGEALSFATLDRQSDGVAAELRRLGLKPGDRVALMLRNSPLVLSTLFGLAKAGLVWVPINAQQRGEGLRYILEHSEPGAIVAEAEFLPVIAETGAVPAGTPLIVQGDPSAALRLETLLESDAAFEEAPPAPDDTFAIMYTSGTTGRPKGVLVSHRMMRLAGEAVARVSAARDGDVLFVWEPLYHIGGAQMIVMPLIRAVSLAMVDRFSASRFWDQVREYGATHIHYLGGILQILLKQPVSPRDHDHPVRIAWGGGCPKETWTPFEERFGVQIRECYGMTEASSITTCNDEGVVGAVGRPMPWFSVELLDGAGKPVPQGERGEIVVRTDRPGAIFAGYFRNPEATARALKDGALRTGDLGSLDDNGTLLFHGRMTDSVRCKGENVSAWEVEHVAATHPSVEDCAIIGVAADVGEQDIKLFVKPKAGTTLDIPSLSGWLGKQLAPYQNPRYIAVVEEFERTPSQRIMKHKLSPALDGCWDRLAG
>NZ_CP012916.1|WP_059399471.1|136437_138141_-|HAMP-domain-containing-protein
MPLHRWFSNRKLLHKILVPVLVLLIVIASLVWTARSAISDLTSSTARITELVADRLGATIAVQSALGDAMDTEANAIVASSREAIDAANTQLTANIAKALSAIDTLAAAYDDPAERESIQAIKSIVGEYERVAQTTVQLARGFDTDGAIRVSIDVGRPVRQKLTAALGERVEQGMAETREAEKRATALSQQVMTRLYTVAGAGLLFAFGLLGSILLFFVVRPLHRLTSEMTSIAAGDLTVSIQGTERTDEVGLLARALQVFKSNGLDMRRLQEESDAQKRQMEADRRSAMLALADQFDANVQGVVQAVSQAARQLQSNAQTMTGAAETTTEQASSVAAATEQASANVATVAAASEQLGSSIGEIGRQVNGAATVARDAVAEGERTNALVERLASAAQKIGDVVNLIQNIASQTNLLALNATIEAARAGEAGKGFTVVAHEVKALATQTSQATEEIASQITEIQAITEGTVTAIRNIARTIADVDAIAGAIAAAVEEQTAATHEIGRNIQQAAQGTRLVSGNIGGVSQSATDVREAAAEVLDAANSLSRDSDLLRDEIHGFIARVRAG
>NZ_CP012916.1|WP_059399470.1|135968_136322_-|hypothetical-protein
MPSLSSGLNALIATVLRSHPSLRVLPVSRYTQDQAAAYAAANGRAIAHAVDERGRQSLLVAMTGLDYVSVCDLDHDLTVPAEQPVSLVVPELRGGLLARFTPRTAGDVCRIVEAVCP
>NZ_CP012916.1|WP_059399469.1|134438_135851_+|amidase
MSTPDLFRLSAADMAEGVRTRRFRARDLVAASLERIAALDGGLKSFITVAPDAALVAAEEADRRVEAGAPLGPLHGVPVGVKDLTLTAGLRTTYGSTLYADLIPDTDDLSVARLKAAGAIIVGKTNTPEFGFGAITGNELCGPTANPYDHDKTSGGSSGGSAAAVAAGLVPLAQGTDFGGSVRTPASFCGVVGLRPTPGRIPSPGRALAWDGLATQGFLARDVADAALALAAVSGPDPRDPTSLPVPEWTVPDLDALDPLSLRVAWSTDLGSALVDLGLAERFEAVMRGLEGRFGAFEEATPDCREAGAAFGTLRAAHIFHTYGRTLEQDGDRLSPSVAWNIARGKGLSAADYLRAEAQRSALYRRFAAFFRDHDILMTLSASVPPFPNAQGDVTEINGFRLSTIIDYLAITYTVSLIGFPCLSIPCGWTADGLPIGLQLIARPYEEERLLGCARFLEREVGFRHRWPPL
>NZ_CP012916.1|WP_107685976.1|132944_134393_+|dihydropyrimidinase
MRVAMNFDLVIRNGTVATASDVFKADVGVRGGRIAALGEGLAAGREEIDAAGLLVLPGGVDGHVHFDQPTGDGSVMADDFLTGTRSAAFGGTTTVLPFACQEKGKTLRAAVDDYHRRAAGKPLIDYAFHLIVTDPTEQVLGQELPALIREGYTSFKIYMTYDALKLNDRQILEVLDIARSEGAMVMMHAENADCIAWLTEKLERAGQTAPFFHGVSRPRVAEREATHRAISLAELVDVPILIVHVSGADAVEQIRWAQGRGLRIYAETCPQYLFLTADDLGGEGFEGAKCVCSPPPRDAANQKVIWDGLTGGAFQVFSSDHAPFRFDGPGGKKVHGEQAPFRCVPNGIPGVETRLPLLFSEGVMKGRMELTKFVELTAANPARMYGLHPRKGTIAVGADADIALWDPSRTVTITNGILHHNVDYTPYEGIEVTGWPVVTLSRGEVICRDGELLAEPGRGAFLPCGLPAPARPKGSPAPVLPF
>NZ_CP012916.1|WP_035680320.1|168801_169635_+|dihydrofolate-reductase-family-protein
MAACVLRLFPGPPEEVALAGLYVADALHRLGSASAPFVYASFVGSLDGRIALQDGEANHLPVEITSENDFRLFLELQAQADCLVTHGGYLRDLAAGRLDDVLQIGTRAVDRDLVRWRLENGLSAQPAIVIASASLDFPIPASVIRKKQRVLIATGRQAPQDRVDAFCARGYPVIIAGDGASVEGAPLVRELGTLGFRSVYLLTGPRMLSTMLRDGMLSRLYLTIAHRVVGGESFHTMATGPRLEAAGRLRLSSLYYDSAAPDGAGQWFARFEPLRPA
>NZ_CP012916.1|WP_014242213.1|169779_169860_-|pyrroloquinoline-quinone-precursor-peptide-PqqA
MKTWRKPKIRVIAVGTEINAYACAQL
>NZ_CP012916.1|WP_079285675.1|170150_170489_+|hypothetical-protein
MRNGVPVALLALLIGCGTAQAEDGYPTYARVDYVLGCMLSNGQGPDVVRKCSCSIDEIAAHFPYDSYVAVETARGMQEAPGERAALMRDVGWIKDLLNEFRQAQVAADLKCF
>NZ_CP012916.1|WP_035680326.1|170513_171344_-|quinoprotein-dehydrogenase-associated-SoxYZ-like-carrier
MTTPHRTIVTLAGPALAGAAWLCLGSAGALAASPQEERWDMLRDMYFAGRAVEDAGPLLSLEAPKRANDAAVVPVRIVTAPGSGVEVTAVHLIVDENPVPMAATFRFAHGNSPQAIDTRLRVNAYTNITAVAETGDGRLLRTTQFVKASGGCSAPALKNAQLAVARMGKMKLNLPDGITAGKPMTAQLLISHPNYTGMQYDQLNYYFIPAHYVKTVAIRYNGAPVLDVQSDISLSEDPSIHFSLVPEEQGTLDVTAEDSNGRIFQESWPIRANSGS
>NZ_CP012916.1|WP_035680329.1|171348_172320_-|quinoprotein-relay-system-zinc-metallohydrolase-2
MQDRTMAAAATFLRPSTRAALAGVWLFVWLLWAAPATADPLPVFEVAPGVFVHAGRHEETDAANAGDIANCGFVVGDDAVAVIDSGGSPIVGHRLREAIRVHTDLPIRYIVNTHMHPDHILGNVAFLPDRPDFVAHGNLQAALVARGEHYRQAFDAAVGAAAAAEVRIIPPTLVVSDRLELNLGGRVLDLVAWPVAHTDNDLTVLDRQTKTLWAGDLLFMERAPAIDGSVLGWLRTLDALAVEPAARVVPGHGPPSAPWSDAAGDLRRYLSRVVEGVRKVQAAHGTIQQAVETVAADEAPHWRLFESYNPRNVTAAFAELEWE
>NZ_CP012916.1|WP_079285668.1|172325_173423_-|S-layer-protein
MDGGALIGLDIGGAHLKAALFDETGTLRDLDQWPCPLWLGLGRLEQAVAAVVARWGQPCHVAATMTGELADLFDDRADGVRRIAATLRSALPATTLSVFAGPRGLVPVDAAPDCAEAVASANWYATALLAAAGGDGVLLDVGSTTTDIVPLVGSGPLHAGYSDAERLDSGELVYTGVVRTPVMAVARTVPYGGGRRALMAELFATMADVHRLTGTLPEGADQHPTADGRDHGVAASARRLLRMVGDDLELGGLPKALRLAGHLAERQLRQIEDALDQVLSRGLMADAPPLVGAGVGRFLVRRLAERRGSAYRDFEAHLPVAPALRERTGWFAPAVSVGWLAFDGAPHKHLCPVAGSADAVSYLPD
>NZ_CP012916.1|WP_079285676.1|173426_174425_-|ATP-grasp-domain-containing-protein
MHILVCEFVTGGGMPPDTAIPASLAREGNLMLHALLADLLEVPGVEVTVTRDARLPPLASPVRSITITDPRESWSLWEDLARQADGVWPIAPETDGALERFSRTVEVTGRHLLNSRADAVAVASSKAATAALLAAAGLPVVPVWRVRAVVADGPPGNGPWVVKPDDGAGCIDTRLIRDHADWRGWLAEADRSGFVVQPFQPGTPASLSMLCRDGRAWPLTANRQNVSLSGGRFSYGGGIVGGMALSPALTDLAQGVAVALPGLFGCVGVDVIVGPDGPTIIEVNPRLTTSSVGMRRATGLNVAAAVLDLSRDPPIPPPPVTRIEPILLTLEG
>NZ_CP012916.1|WP_035680334.1|174459_175167_+|hypothetical-protein
MFHVVPVIDLREGGVVHARRGDRGRYPPLRSLLCAGNDPVAVVGGLLRLHPFPVVYAADLDAIQGTGDNRPALARLKAAFPDVGFWVDAGFRSADAVRGFVASGLGDAVLGSESLDGFAPLTALKASPAWERVILSLDFRDRFVGLPDLLERPDLWPRRIIAMTLARVGSGEGPDWSRLAEIGRTKPQASLFAAGGVRNGDDLRDLAAHGSAGALVATALHDGRIGGADLDALSR
>NZ_CP012916.1|WP_162471583.1|175172_175700_-|formaldehyde-activating-enzyme
MPMWGGQSTKINRVLVGESLVGDGNEVAHIDLIMGPRGSAVETAFCNALTNNKDGFTALLAVVAPNLMCKPATILFNKVTIKGAEQAVQMFGPAQHAVAKAVADCVSEGTIPQDEIDNIFICVGVFIHWEAKDNAKIQDYNYRATKEAIERAVASFPSAQDLMSQKDKVKHPFAA
>NZ_CP012916.1|WP_051140751.1|175761_176640_-|triphosphoribosyl-dephospho-CoA-synthase
MIDWAPIPPDPASGVAGAYRAACHLELRALKPGNVHIHAEGHGMTVDQFLASAEATAPILAWPGLSVGERLHAAVRATREAVGCNTNLGILLLAAPLAQAALMPGNAPLRERLGHVLASLTVADADLAFQAITLAEPAGLGRVEGADVHAPARVTLLDAMREAQDRDTIARQYATGFADVFDTGVPSLRRWLEAGAEFEQATEMIYVEFLATLPDSHVIRKYGRERSEWLRARASELRENTAPDRAFTLTRSRLAELDRDLKYNGVNPGTTADIVVGCLFALWLMQSRSHPS

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Crispr_ID: NZ_CP012916_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012916_2

155489-155677

Orphan

Consensus_repeat	Method
GTGACGCTG---GGCAGCGCCGGCAACACGCTGCTG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP012916_2

>merge|NZ_CP012916|2|155489-155677|PILER-CR
GTGACGCTGGGCAGCGCTGGCGTCACGCTGCTGGTGGACGGTGTCGAGACGGTGACCGGCGGACTCGGCACCGACATGGTGGAACTGGGCAGCGCCGGCAACACGCTGCTGTTGGGTGGTATCGAAACGCTGGCCGGCGGCATCGGCACCGACGTGGTGACGCTGGGCGGCGGCGGCAACACGTTGCTG

>NZ_CP012916|2|2|155489-155677|PILER-CR
GTGACGCTGGGCAGCGCTGGCGTCACGCTGCTG	GTGGACGGTGTCGAGACGGTGACCGGCGGACTCGGCACCGACATGGTGGAA
CTGGGCAGCGCCGGCAACACGCTGCTGTTGGGT	GGTATCGAAACGCTGGCCGGCGGCATCGGCACCGACGTGGTGACG
CTGGGCGGCGGCGGCAACACGTTGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012916.1\|WP_059399471.1\|136437_138141_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP012916.1\|WP_051140751.1\|175761_176640_-\|triphosphoribosyl-dephospho-CoA-synthase	unknown	unknown	gnl\|CDD\|376637
NZ_CP012916.1\|WP_035680320.1\|168801_169635_+\|dihydrofolate-reductase-family-protein	unknown	unknown	gnl\|CDD\|224896
NZ_CP012916.1\|WP_079285675.1\|170150_170489_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012916.1\|WP_035680230.1\|141594_142698_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP012916.1\|WP_079285668.1\|172325_173423_-\|S-layer-protein	unknown	unknown	gnl\|CDD\|163144
NZ_CP012916.1\|WP_162471583.1\|175172_175700_-\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|378034
NZ_CP012916.1\|WP_035680235.1\|143930_144701_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NZ_CP012916.1\|WP_107685976.1\|132944_134393_+\|dihydropyrimidinase	unknown	unknown	gnl\|CDD\|184033
NZ_CP012916.1\|WP_035680329.1\|171348_172320_-\|quinoprotein-relay-system-zinc-metallohydrolase-2	unknown	unknown	gnl\|CDD\|275352
NZ_CP012916.1\|WP_035680334.1\|174459_175167_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240074
NZ_CP012916.1\|WP_014242213.1\|169779_169860_-\|pyrroloquinoline-quinone-precursor-peptide-PqqA	unknown	unknown	gnl\|CDD\|273976
NZ_CP012916.1\|WP_059399469.1\|134438_135851_+\|amidase	unknown	unknown	gnl\|CDD\|223232
NZ_CP012916.1\|WP_079285676.1\|173426_174425_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|224734
NZ_CP012916.1\|WP_035680232.1\|142728_143805_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270307
NZ_CP012916.1\|WP_035680326.1\|170513_171344_-\|quinoprotein-dehydrogenase-associated-SoxYZ-like-carrier	unknown	unknown	gnl\|CDD\|275350
NZ_CP012916.1\|WP_059399470.1\|135968_136322_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377736
NZ_CP012916.1\|WP_059399472.1\|138259_139789_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341257
NZ_CP012916.1\|WP_035680238.1\|144880_145765_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP012916.1\|WP_059399473.1\|139828_141598_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224097

Protein	Function_ID	Function_description	E-value
NZ_CP012916.1\|WP_059399471.1\|136437_138141_-\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.00416e-37
NZ_CP012916.1\|WP_051140751.1\|175761_176640_-\|triphosphoribosyl-dephospho-CoA-synthase	gnl\|CDD\|376637	pfam01874, CitG, ATP:dephospho-CoA triphosphoribosyl transferase. The citG gene is found in a gene cluster with citrate lyase subunits. The function of the CitG protein was elucidated as ATP:dephospho-CoA triphosphoribosyl transferase.	1.51378e-67
NZ_CP012916.1\|WP_035680320.1\|168801_169635_+\|dihydrofolate-reductase-family-protein	gnl\|CDD\|224896	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism].	8.27898e-18
NZ_CP012916.1\|WP_035680230.1\|141594_142698_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.9631e-149
NZ_CP012916.1\|WP_079285668.1\|172325_173423_-\|S-layer-protein	gnl\|CDD\|163144	TIGR03123, one_C_unchar_1, probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages. [Central intermediary metabolism, One-carbon metabolism].	8.37862e-108
NZ_CP012916.1\|WP_162471583.1\|175172_175700_-\|formaldehyde-activating-enzyme	gnl\|CDD\|378034	pfam08714, Fae, Formaldehyde-activating enzyme (Fae). Formaldehyde-activating enzyme is an enzyme required for energy metabolism and formaldehyde detoxification. It catalyzes the condensation of formaldehyde and tetrahydromethanopterin to methylene tetrahydromethanopterin.	2.03737e-96
NZ_CP012916.1\|WP_035680235.1\|143930_144701_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	2.53008e-55
NZ_CP012916.1\|WP_107685976.1\|132944_134393_+\|dihydropyrimidinase	gnl\|CDD\|184033	PRK13404, PRK13404, dihydropyrimidinase; Provisional.	0
NZ_CP012916.1\|WP_035680329.1\|171348_172320_-\|quinoprotein-relay-system-zinc-metallohydrolase-2	gnl\|CDD\|275352	TIGR04559, metallo-beta-lactamase_family_protein, quinoprotein relay system zinc metallohydrolase 2. By homology, members are Zn metallohydrolases in the same family as the SoxH protein associated with sulfate metabolism, Bacillus cereus beta-lactamase II (see PDB:1bc2), and, more distantly, hydroxyacylglutathione hydrolase (glyoxalase II). All members occur in genomes with both PQQ biosynthesis and a PQQ-dependent (quinoprotein) dehydrogenase that has a motif of two consecutive Cys residues (see TIGR03075). The Cys-Cys motif is associated with electron transfer by specialized cytochromes such as c551. All these genomes also include a fusion protein (TIGR04557) whose domains resemble SoxY and SoxZ from thiosulfate oxidation. A conserved Cys in this fusion protein aligns to the Cys residue in SoxY that carries sulfur cycle intermediates. In many genomes, the genes for PQQ biosynthesis enzymes, PQQ-dependent enzymes, their associated cytochromes, and members of this family are clustered. Note that one to three closely related Zn metallohydrolases may occur; this family represents a specific clade among them. Some members of this family have a short additional N-terminal domain with four conserved Cys residues. [Unknown function, Enzymes of unknown specificity].	8.4779e-153
NZ_CP012916.1\|WP_035680334.1\|174459_175167_+\|hypothetical-protein	gnl\|CDD\|240074	cd04723, HisA_HisF, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.	7.5783e-63
NZ_CP012916.1\|WP_014242213.1\|169779_169860_-\|pyrroloquinoline-quinone-precursor-peptide-PqqA	gnl\|CDD\|273976	TIGR02107, Coenzyme_PQQ_synthesis_protein_A, coenzyme PQQ precursor peptide PqqA. This model describes a very small protein, coenzyme PQQ biosynthesis protein A, which is smaller than 25 amino acids in many species. It is proposed to serve as a peptide precursor of coenzyme pyrrolo-quinoline-quinone (PQQ), with Glu and Tyr of a conserved motif Glu-Xxx-Xxx-Xxx-Tyr becoming part of the product. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0.00343478
NZ_CP012916.1\|WP_059399469.1\|134438_135851_+\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	5.92093e-130
NZ_CP012916.1\|WP_079285676.1\|173426_174425_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|224734	COG1821, COG1821, Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only].	1.76255e-32
NZ_CP012916.1\|WP_035680232.1\|142728_143805_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270307	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic binding domain that serves as the primary high-affinity receptor of an uncharacterized ABC-type polyamine transporter from Rhodopseudomonas palustris Cga009 and related proteins from other bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.42693e-85
NZ_CP012916.1\|WP_035680326.1\|170513_171344_-\|quinoprotein-dehydrogenase-associated-SoxYZ-like-carrier	gnl\|CDD\|275350	TIGR04557, hypothetical_protein, quinoprotein dehydrogenase-associated SoxYZ-like carrier. Members of this family are fusion proteins, with the N-terminal region similar to the sulfur oxidation protein SoxY (TIGR04488) and the C-terminal region similar to sulfur oxidation protein SoxZ (TIGR04490). Members occur exclusively in species with PQQ-dependent enzymes that have a Cys-Cys motif (TIGR03075) for electron transfer to c550 family cytochrome. By homology to the sulfur moiety-binding subunit SoxY, we predict the conserved Cys in the Gly-Gly-Cys motif binds some unknown adduct.	1.42837e-90
NZ_CP012916.1\|WP_059399470.1\|135968_136322_-\|hypothetical-protein	gnl\|CDD\|377736	pfam06938, DUF1285, Protein of unknown function (DUF1285). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. The structures revealed a conserved core with domain duplication and a superficial similarity of the C-terminal domain to pleckstrin homology-like folds. The conservation of the domain- interface indicates a potential binding site that is likely to involve a nucleotide-based ligand, with genome-context and gene-fusion analyses additionally supporting a role for this family in signal transduction, possibly during oxidative stress.	0.00787321
NZ_CP012916.1\|WP_059399472.1\|138259_139789_-\|AMP-binding-protein	gnl\|CDD\|341257	cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins.	3.41042e-145
NZ_CP012916.1\|WP_035680238.1\|144880_145765_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.63109e-61
NZ_CP012916.1\|WP_059399473.1\|139828_141598_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	3.52556e-67

>NZ_CP012916.1|WP_035680238.1|144880_145765_+|helix-turn-helix-domain-containing-protein
MAPRRPSSRQSDTESATAVADASVKEGGAARAGDPLMVMSVEKAFRVLNAFDAARPTMSLTQIASIVGLDKSAAQRFTHTLEKLGYLHKDPETKRFELTVKTLDLGHHYLRGNGLLERSMPYLMHLSKTTEETINLTMLDDTEIVFVSRFMSRHVLNTDVVLGMRMPAYCTAPGVAMLSRMPIEEAVHLIDRMDLHPYTPNTTWKREDLLAKIERSADLGYATAFEEYYHGDLSIAAAVVGPAGAPIGAINIAVSRSRFTPQEAEERFAPLVVAASSSISTIGRPAPPRKNGRR
>NZ_CP012916.1|WP_035680235.1|143930_144701_-|enoyl-CoA-hydratase/isomerase-family-protein
MFKFILTEVRGPVGIITLNRPEILNAWNAAMRDELVVAFEQFENQDGVRAIILTGAGDRAFGAGQDLNETKTFDADRAEEWVAEWERLYHRMRTLSKPLIIALNGVAAGSAFQVALLGDFRIGHAGVRMGQPEINSGIASTTGPWIMKEMIGLARTMDLTLSGRLMDAEESHRIGLINRIVPQDRVMAESLALAEELAAKPPVAMRLDKQRFREMTEAGFRDALAAGVRIQREAYASGEPARMMEEFLAKRAAKRA
>NZ_CP012916.1|WP_035680232.1|142728_143805_-|polyamine-ABC-transporter-substrate-binding-protein
MSKTSGFSMGRRSLMKGAAGVALGATLPAGLLRPAFAATQQITVADPGGPYSPAFRKSFYDPFEKATGIKVVNVAREAEPTAQFKAIVETKSYTWDVCTLTLSARDILMKQNLLEPLNFAAADVPGLMPDSLTSHWMGTDVYSTILGYRADKFASNAPQSWADFWNVEKFPGRRSLRKNPIDTLEQALLADGVPLDQLYPLDVDRAFKALDRIKPHVAVWWTGGAQSSQLIQSGEVDMIALWNARAQAVIDGGAPVKINWNQGLYSIEGWGIPRGNPRADAARQFIKFCADPARQAVFTEVLAYGPTNLDAYKSIPKERAPALPTFEDNLKVMTIAKEDWWGANRAKMNERFNAWILG
>NZ_CP012916.1|WP_035680230.1|141594_142698_-|ABC-transporter-ATP-binding-protein
MLSPLAQARTAPVQAGAAATPKLLVDGLTKRYGAITALEPTRLEVPAGEFLTLLGPSGSGKTTLLQMICGLVEPSGGRILIDGQDETRTPVHKRDIGLVFQHYALFPHLTVAENIGFPLRMRGVAPADLTRRVKEALEMVHLGHLAGRFPKELSGGQQQRVALARCFVYQPSVILMDEPLGALDKKLREHMQYEIKRLHRETGATIIYVTHDQEEALAMSDRICLMNHARIEQLGTPHDIYARPKTAFAADFIGVSNIFRGQVRRDGSGAPMLVTGNGSFRLSADTPDSQDGTLVVRPEQLDIDGEGDNEVRGEVVDTVYAGSETRVLVSLGGEETITVRLRRGTAPPRLGEVVAVRWRADAGVLVS
>NZ_CP012916.1|WP_059399473.1|139828_141598_-|ABC-transporter-permease-subunit
MSAATLNHDGAFAAARRRLRFGPLWLAAPGLAFLAIFFLFPVLRLLGLSVQDLETSAWTGDHYARIVATDVYFRVLMSTFRIAGLTALLSLLFGYPLAYWLAQLPERQRGLAILAVMVPFWTSYLVKTFAWMVILGRTGVINQILSGTGMSPLPLLHNEFGVMAGMVHAMLPLAVLTMLPVMTTLDRRLVQAAETLGAPPANAFWLVYFQLSLPGVAAAGLLTFISSLGFFIVPALLGGPQQTMLAQLIITQIQEMLNWAFAGALATFMLVAALVTCWVYDRLFGLSSLSGETSGRTGGGQGRLREAGMGILSALAKASTALGGPLGRLLGPKVMDRLLPLYSTAVIVFLVAPALVVVPIAFTTSPFLDFPPPGYGLEWFRVYFNSDLWVSATIRSFAVAFATAVLATLVAGLAALALARSSSRWRGAIFAFFLAPMIVPRIVIAVGLFYLFAQIGLVATDLGLIIGHTVLALPFAFVAISAVVKGHDWRLDQAAATLGANRFRTLMLVTVPLIRGGLVAAFLFAFITSFDELTVAIFVSGGVKTTLPKQMWDDMILQLNPTLAAVSVVVFAIVMALLLMAEWLRRPAR
>NZ_CP012916.1|WP_059399472.1|138259_139789_-|AMP-binding-protein
MSDFEEGFVRLFTQAARTGRARLFARFNGEALSFATLDRQSDGVAAELRRLGLKPGDRVALMLRNSPLVLSTLFGLAKAGLVWVPINAQQRGEGLRYILEHSEPGAIVAEAEFLPVIAETGAVPAGTPLIVQGDPSAALRLETLLESDAAFEEAPPAPDDTFAIMYTSGTTGRPKGVLVSHRMMRLAGEAVARVSAARDGDVLFVWEPLYHIGGAQMIVMPLIRAVSLAMVDRFSASRFWDQVREYGATHIHYLGGILQILLKQPVSPRDHDHPVRIAWGGGCPKETWTPFEERFGVQIRECYGMTEASSITTCNDEGVVGAVGRPMPWFSVELLDGAGKPVPQGERGEIVVRTDRPGAIFAGYFRNPEATARALKDGALRTGDLGSLDDNGTLLFHGRMTDSVRCKGENVSAWEVEHVAATHPSVEDCAIIGVAADVGEQDIKLFVKPKAGTTLDIPSLSGWLGKQLAPYQNPRYIAVVEEFERTPSQRIMKHKLSPALDGCWDRLAG
>NZ_CP012916.1|WP_059399471.1|136437_138141_-|HAMP-domain-containing-protein
MPLHRWFSNRKLLHKILVPVLVLLIVIASLVWTARSAISDLTSSTARITELVADRLGATIAVQSALGDAMDTEANAIVASSREAIDAANTQLTANIAKALSAIDTLAAAYDDPAERESIQAIKSIVGEYERVAQTTVQLARGFDTDGAIRVSIDVGRPVRQKLTAALGERVEQGMAETREAEKRATALSQQVMTRLYTVAGAGLLFAFGLLGSILLFFVVRPLHRLTSEMTSIAAGDLTVSIQGTERTDEVGLLARALQVFKSNGLDMRRLQEESDAQKRQMEADRRSAMLALADQFDANVQGVVQAVSQAARQLQSNAQTMTGAAETTTEQASSVAAATEQASANVATVAAASEQLGSSIGEIGRQVNGAATVARDAVAEGERTNALVERLASAAQKIGDVVNLIQNIASQTNLLALNATIEAARAGEAGKGFTVVAHEVKALATQTSQATEEIASQITEIQAITEGTVTAIRNIARTIADVDAIAGAIAAAVEEQTAATHEIGRNIQQAAQGTRLVSGNIGGVSQSATDVREAAAEVLDAANSLSRDSDLLRDEIHGFIARVRAG
>NZ_CP012916.1|WP_059399470.1|135968_136322_-|hypothetical-protein
MPSLSSGLNALIATVLRSHPSLRVLPVSRYTQDQAAAYAAANGRAIAHAVDERGRQSLLVAMTGLDYVSVCDLDHDLTVPAEQPVSLVVPELRGGLLARFTPRTAGDVCRIVEAVCP
>NZ_CP012916.1|WP_059399469.1|134438_135851_+|amidase
MSTPDLFRLSAADMAEGVRTRRFRARDLVAASLERIAALDGGLKSFITVAPDAALVAAEEADRRVEAGAPLGPLHGVPVGVKDLTLTAGLRTTYGSTLYADLIPDTDDLSVARLKAAGAIIVGKTNTPEFGFGAITGNELCGPTANPYDHDKTSGGSSGGSAAAVAAGLVPLAQGTDFGGSVRTPASFCGVVGLRPTPGRIPSPGRALAWDGLATQGFLARDVADAALALAAVSGPDPRDPTSLPVPEWTVPDLDALDPLSLRVAWSTDLGSALVDLGLAERFEAVMRGLEGRFGAFEEATPDCREAGAAFGTLRAAHIFHTYGRTLEQDGDRLSPSVAWNIARGKGLSAADYLRAEAQRSALYRRFAAFFRDHDILMTLSASVPPFPNAQGDVTEINGFRLSTIIDYLAITYTVSLIGFPCLSIPCGWTADGLPIGLQLIARPYEEERLLGCARFLEREVGFRHRWPPL
>NZ_CP012916.1|WP_107685976.1|132944_134393_+|dihydropyrimidinase
MRVAMNFDLVIRNGTVATASDVFKADVGVRGGRIAALGEGLAAGREEIDAAGLLVLPGGVDGHVHFDQPTGDGSVMADDFLTGTRSAAFGGTTTVLPFACQEKGKTLRAAVDDYHRRAAGKPLIDYAFHLIVTDPTEQVLGQELPALIREGYTSFKIYMTYDALKLNDRQILEVLDIARSEGAMVMMHAENADCIAWLTEKLERAGQTAPFFHGVSRPRVAEREATHRAISLAELVDVPILIVHVSGADAVEQIRWAQGRGLRIYAETCPQYLFLTADDLGGEGFEGAKCVCSPPPRDAANQKVIWDGLTGGAFQVFSSDHAPFRFDGPGGKKVHGEQAPFRCVPNGIPGVETRLPLLFSEGVMKGRMELTKFVELTAANPARMYGLHPRKGTIAVGADADIALWDPSRTVTITNGILHHNVDYTPYEGIEVTGWPVVTLSRGEVICRDGELLAEPGRGAFLPCGLPAPARPKGSPAPVLPF
>NZ_CP012916.1|WP_035680320.1|168801_169635_+|dihydrofolate-reductase-family-protein
MAACVLRLFPGPPEEVALAGLYVADALHRLGSASAPFVYASFVGSLDGRIALQDGEANHLPVEITSENDFRLFLELQAQADCLVTHGGYLRDLAAGRLDDVLQIGTRAVDRDLVRWRLENGLSAQPAIVIASASLDFPIPASVIRKKQRVLIATGRQAPQDRVDAFCARGYPVIIAGDGASVEGAPLVRELGTLGFRSVYLLTGPRMLSTMLRDGMLSRLYLTIAHRVVGGESFHTMATGPRLEAAGRLRLSSLYYDSAAPDGAGQWFARFEPLRPA
>NZ_CP012916.1|WP_014242213.1|169779_169860_-|pyrroloquinoline-quinone-precursor-peptide-PqqA
MKTWRKPKIRVIAVGTEINAYACAQL
>NZ_CP012916.1|WP_079285675.1|170150_170489_+|hypothetical-protein
MRNGVPVALLALLIGCGTAQAEDGYPTYARVDYVLGCMLSNGQGPDVVRKCSCSIDEIAAHFPYDSYVAVETARGMQEAPGERAALMRDVGWIKDLLNEFRQAQVAADLKCF
>NZ_CP012916.1|WP_035680326.1|170513_171344_-|quinoprotein-dehydrogenase-associated-SoxYZ-like-carrier
MTTPHRTIVTLAGPALAGAAWLCLGSAGALAASPQEERWDMLRDMYFAGRAVEDAGPLLSLEAPKRANDAAVVPVRIVTAPGSGVEVTAVHLIVDENPVPMAATFRFAHGNSPQAIDTRLRVNAYTNITAVAETGDGRLLRTTQFVKASGGCSAPALKNAQLAVARMGKMKLNLPDGITAGKPMTAQLLISHPNYTGMQYDQLNYYFIPAHYVKTVAIRYNGAPVLDVQSDISLSEDPSIHFSLVPEEQGTLDVTAEDSNGRIFQESWPIRANSGS
>NZ_CP012916.1|WP_035680329.1|171348_172320_-|quinoprotein-relay-system-zinc-metallohydrolase-2
MQDRTMAAAATFLRPSTRAALAGVWLFVWLLWAAPATADPLPVFEVAPGVFVHAGRHEETDAANAGDIANCGFVVGDDAVAVIDSGGSPIVGHRLREAIRVHTDLPIRYIVNTHMHPDHILGNVAFLPDRPDFVAHGNLQAALVARGEHYRQAFDAAVGAAAAAEVRIIPPTLVVSDRLELNLGGRVLDLVAWPVAHTDNDLTVLDRQTKTLWAGDLLFMERAPAIDGSVLGWLRTLDALAVEPAARVVPGHGPPSAPWSDAAGDLRRYLSRVVEGVRKVQAAHGTIQQAVETVAADEAPHWRLFESYNPRNVTAAFAELEWE
>NZ_CP012916.1|WP_079285668.1|172325_173423_-|S-layer-protein
MDGGALIGLDIGGAHLKAALFDETGTLRDLDQWPCPLWLGLGRLEQAVAAVVARWGQPCHVAATMTGELADLFDDRADGVRRIAATLRSALPATTLSVFAGPRGLVPVDAAPDCAEAVASANWYATALLAAAGGDGVLLDVGSTTTDIVPLVGSGPLHAGYSDAERLDSGELVYTGVVRTPVMAVARTVPYGGGRRALMAELFATMADVHRLTGTLPEGADQHPTADGRDHGVAASARRLLRMVGDDLELGGLPKALRLAGHLAERQLRQIEDALDQVLSRGLMADAPPLVGAGVGRFLVRRLAERRGSAYRDFEAHLPVAPALRERTGWFAPAVSVGWLAFDGAPHKHLCPVAGSADAVSYLPD
>NZ_CP012916.1|WP_079285676.1|173426_174425_-|ATP-grasp-domain-containing-protein
MHILVCEFVTGGGMPPDTAIPASLAREGNLMLHALLADLLEVPGVEVTVTRDARLPPLASPVRSITITDPRESWSLWEDLARQADGVWPIAPETDGALERFSRTVEVTGRHLLNSRADAVAVASSKAATAALLAAAGLPVVPVWRVRAVVADGPPGNGPWVVKPDDGAGCIDTRLIRDHADWRGWLAEADRSGFVVQPFQPGTPASLSMLCRDGRAWPLTANRQNVSLSGGRFSYGGGIVGGMALSPALTDLAQGVAVALPGLFGCVGVDVIVGPDGPTIIEVNPRLTTSSVGMRRATGLNVAAAVLDLSRDPPIPPPPVTRIEPILLTLEG
>NZ_CP012916.1|WP_035680334.1|174459_175167_+|hypothetical-protein
MFHVVPVIDLREGGVVHARRGDRGRYPPLRSLLCAGNDPVAVVGGLLRLHPFPVVYAADLDAIQGTGDNRPALARLKAAFPDVGFWVDAGFRSADAVRGFVASGLGDAVLGSESLDGFAPLTALKASPAWERVILSLDFRDRFVGLPDLLERPDLWPRRIIAMTLARVGSGEGPDWSRLAEIGRTKPQASLFAAGGVRNGDDLRDLAAHGSAGALVATALHDGRIGGADLDALSR
>NZ_CP012916.1|WP_162471583.1|175172_175700_-|formaldehyde-activating-enzyme
MPMWGGQSTKINRVLVGESLVGDGNEVAHIDLIMGPRGSAVETAFCNALTNNKDGFTALLAVVAPNLMCKPATILFNKVTIKGAEQAVQMFGPAQHAVAKAVADCVSEGTIPQDEIDNIFICVGVFIHWEAKDNAKIQDYNYRATKEAIERAVASFPSAQDLMSQKDKVKHPFAA
>NZ_CP012916.1|WP_051140751.1|175761_176640_-|triphosphoribosyl-dephospho-CoA-synthase
MIDWAPIPPDPASGVAGAYRAACHLELRALKPGNVHIHAEGHGMTVDQFLASAEATAPILAWPGLSVGERLHAAVRATREAVGCNTNLGILLLAAPLAQAALMPGNAPLRERLGHVLASLTVADADLAFQAITLAEPAGLGRVEGADVHAPARVTLLDAMREAQDRDTIARQYATGFADVFDTGVPSLRRWLEAGAEFEQATEMIYVEFLATLPDSHVIRKYGRERSEWLRARASELRENTAPDRAFTLTRSRLAELDRDLKYNGVNPGTTADIVVGCLFALWLMQSRSHPS

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Crispr_ID: NZ_CP012916_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012916_3

793348-793689

Orphan

Consensus_repeat	Method
GCGCGGGCTNNNGCTCCAT	CRT

5 spacers

The CRISPR arrays of NZ_CP012916_3

>merge|NZ_CP012916|3|793348-793689|CRT
GCGCGAGCAGAAACTCCATCCTCTGCTCGCCGCCGGATCGCCCCCCGGGCGGTGCGGACGGCAGGGCGCGGGCTGTCGCTCCATACCCGCGGGCTATCGCTCCATGGTGGGCGGGTGAACCTCCGCCGAAACGCGGGCTGTTGCTCCATAGTCCCGCGCACCGGCCGCAGCCTATGGCTCCAACGACCGCGAATCCGGAGGCGCGGGCTATCGCTCCAGGGGCGCGGGTTTCCACTCCAGGATTCCGATTCGGCGATGAAGCGCGGGCTGTCGCTCCATAGCGGCGGGCAAAGGCTCCAGGAGCGCGGGCCAGGGCTTCAACGGCGCGGGTTACCGCTCCAT

>NZ_CP012916|3|1|793348-793689|CRT
GCGCGAGCAGAAACTCCAT	CCTCTGCTCGCCGCCGGATCGCCCCCCGGGCGGTGCGGACGGCAGG
GCGCGGGCTGTCGCTCCAT	ACCCGCGGGCTATCGCTCCATGGTGGGCGGGTGAACCTCCGCCGAA
ACGCGGGCTGTTGCTCCAT	AGTCCCGCGCACCGGCCGCAGCCTATGGCTCCAACGACCGCGAATCCGGAG
GCGCGGGCTATCGCTCCAG	GGGCGCGGGTTTCCACTCCAGGATTCCGATTCGGCGATGAA
GCGCGGGCTGTCGCTCCAT	AGCGGCGGGCAAAGGCTCCAGGAGCGCGGGCCAGGGCTTCAACG
GCGCGGGTTACCGCTCCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012916.1\|WP_167555936.1\|789307_789478_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012916.1\|WP_059399567.1\|794692_795379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012916.1\|WP_059399565.1\|784750_788071_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274362
NZ_CP012916.1\|WP_059399566.1\|789935_790616_+\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|226868
NZ_CP012916.1\|WP_035679996.1\|788084_789152_-\|response-regulator	unknown	unknown	gnl\|CDD\|225971
NZ_CP012916.1\|WP_051140718.1\|804027_805092_-\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|224666
NZ_CP012916.1\|WP_079292173.1\|805181_805928_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP012916.1\|WP_035679948.1\|791821_793039_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012916.1\|WP_035679943.1\|795401_796442_-\|DctP-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270395
NZ_CP012916.1\|WP_035679879.1\|802849_804031_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NZ_CP012916.1\|WP_059399570.1\|801671_802853_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380548
NZ_CP012916.1\|WP_059399564.1\|782834_783773_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NZ_CP012916.1\|WP_035679874.1\|806820_807579_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270259
NZ_CP012916.1\|WP_059399563.1\|781635_782832_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein-ProV	unknown	unknown	gnl\|CDD\|226643
NZ_CP012916.1\|WP_035679951.1\|791346_791802_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP012916.1\|WP_059399568.1\|798643_799171_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP012916.1\|WP_035679953.1\|790798_791218_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP012916.1\|WP_035680004.1\|783835_784726_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
NZ_CP012916.1\|WP_079285571.1\|796457_798599_-\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NZ_CP012916.1\|WP_059399569.1\|799167_801669_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883

Protein	Function_ID	Function_description	E-value
NZ_CP012916.1\|WP_059399569.1\|799167_801669_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.14224e-21
NZ_CP012916.1\|WP_059399565.1\|784750_788071_-\|PAS-domain-S-box-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.92472e-118
NZ_CP012916.1\|WP_059399566.1\|789935_790616_+\|DUF1311-domain-containing-protein	gnl\|CDD\|226868	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown].	1.53641e-22
NZ_CP012916.1\|WP_035679996.1\|788084_789152_-\|response-regulator	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	8.46805e-104
NZ_CP012916.1\|WP_079292173.1\|805181_805928_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	9.86335e-19
NZ_CP012916.1\|WP_035679943.1\|795401_796442_-\|DctP-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270395	cd13677, PBP2_TRAP_SBP_like_6, Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold. This subfamily includes uncharacterized periplasmic substrate-binding proteins similar to TRAP transport systems such as SiaP (a sialic acid binding virulence factor) and TeaA (an ectoine binding protein). TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.62763e-152
NZ_CP012916.1\|WP_035679879.1\|802849_804031_-\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	2.54099e-101
NZ_CP012916.1\|WP_059399570.1\|801671_802853_-\|hypothetical-protein	gnl\|CDD\|380548	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.	1.32493e-21
NZ_CP012916.1\|WP_059399563.1\|781635_782832_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein-ProV	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	0
NZ_CP012916.1\|WP_059399564.1\|782834_783773_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	4.39239e-134
NZ_CP012916.1\|WP_035679874.1\|806820_807579_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270259	cd13541, PBP2_ModA_like_2, Substrate binding domain of molybdate-binding proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.16469e-96
NZ_CP012916.1\|WP_059399568.1\|798643_799171_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.26898e-05
NZ_CP012916.1\|WP_035679951.1\|791346_791802_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.88998e-22
NZ_CP012916.1\|WP_051140718.1\|804027_805092_-\|patatin-like-phospholipase-family-protein	gnl\|CDD\|224666	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	6.65077e-42
NZ_CP012916.1\|WP_035679953.1\|790798_791218_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	7.09174e-75
NZ_CP012916.1\|WP_035680004.1\|783835_784726_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.65481e-121
NZ_CP012916.1\|WP_079285571.1\|796457_798599_-\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	1.21501e-53

>NZ_CP012916.1|WP_035679948.1|791821_793039_-|hypothetical-protein
MSKIATPGALQLVLFELEDRSQSHLIALYDLAPRYVFASRDGGRSAETAPAKGNFVASIKREFTYHGSTFHLTIQPARLTRMVNRDDGAAQADGQTEIEYEVFPAEREQVVEHVVRRLAMDRSRLSLGGENRDKVQMRFTLYEIQRELKAVGHTLSIRDIRESLTILARSRIIIGKPAEGVKKGRGANLLESTAFPVLAIRSRPDLIGDEGGDEETHLQFNPLVSSAIRNLEFKPVSYQWLMRLKSPVSRWLYNRLSAEYDYSGAETPGDLGARAMTLSADEIIKNSGMNVWSRRRDTLRAVTSAVDALVEEGILTSAEKLYDKVGARIEGITYVMLPSAKFLAQVRKAQAVESANVAAMRAITGDDRRPTDFVPVTPAATVETRARRAKRLTEEPPRLPMAEAG
>NZ_CP012916.1|WP_035679951.1|791346_791802_+|MarR-family-transcriptional-regulator
MSTENDNPLLLANQACFALYSANLAMTRVYRPLLEALELTYPQYLAMLLLWEQDGQTMKALGERLLLDSGTLTPLLKRLEGQGLVTRGRDPADERLVRIHLTPQGTALRERATGLPERIAAAANCPLPDLAGLRDALLSLRDSLNAAADRD
>NZ_CP012916.1|WP_035679953.1|790798_791218_+|organic-hydroperoxide-resistance-protein
MKILYTTKATATGGRDGKAETDDGLLSVALAAPKELGGKGGATNPEQLFAAGYSACFLGAMKFVGNRDKITVPADVTVTAQVGIGPRDDGEGFGIAVDLTVSLPGLDKAAAEDLVARAHKVCPYSHATKGNIAVNTAIA
>NZ_CP012916.1|WP_059399566.1|789935_790616_+|DUF1311-domain-containing-protein
MLRPALLALGLLALPTAAAAAGFPCSKAATPTEKAICADPALSALDGRLATTYRAALERLSGASPEEGAAGAAVKADQRAWLRERDSCGADAACLRRAYDGRTAILSFRTDPATPPSPIGRYVGRFDHEGFIGIAAIALRNGTVAVSVSGAEPSAGRWVCDFSGIGRLDDKGRLTVGTPDAEGGGLILVAEEGGGVVIPDLEPNRAASGYWCGHNGSFIWTYRRAS
>NZ_CP012916.1|WP_167555936.1|789307_789478_-|hypothetical-protein
MNTDSFANPLSSTELRNIRRQAEALRAAYLRSLFRRLVAAFSRPGAATNGGLTAAR
>NZ_CP012916.1|WP_035679996.1|788084_789152_-|response-regulator
MQVVIVDDDPSTLFITSAVIRRIDDAEPIGMGNPLEALDWLAVNTPDLILIDHVMPDLDGMDVLERIRAQRHLADVPVVMITADTSVKLRVAALESGCTDFLTKPIIVPELLARAQNLLRLRLGQRMMRDQAAVLRSRVEEATAQLRQQAQELVARLARAAEYRDPETGLHIERMASYSRVIAESLGMDPDDCARLAEAAPMHDIGKIGIPDAILLKPGRLTDSEMQVMREHPAIGHAVLQGSGHPLISKAAEIALGHHEKYDGTGYPKGLRGEEIPLACRIVAIADVFDALTTARPYKRPWPLDIAKAYIVERSGSHFDPVCVNAFLRVWTTVLAIHDAHPDPDFTGTDGAAFR
>NZ_CP012916.1|WP_059399565.1|784750_788071_-|PAS-domain-S-box-protein
MPDTPASLSLPEHGHRAYALRSRALVSGVWMATLLLTAAAWTAALYLTDRDQRDALQRAERDTGNLAHIIAEQTTRAIAGTDRILSFIGYDLYRLGSQSPLLRDVMRNATLDSDLLLQLAYADGKGDLIQTSVDNAPARVNLADREHFRVHKEGTVQGLFISRPVFGRASGKWSIQLSRKVTAPDGGFGGMIVASLDPFYFGRTFDNLDVGHDGIISIIGRDGILRARSVMDDRIIGLDLGMSPILREAQEKTQGFLRSVSPVDGGVRLTSFRSLPNYPLIVSAGFGEAEFMAETWARQRAYTVGAGLTTALLFVLAALVTWQSRAQERAHATLDEAARHLRASKTKLRDIAETASDWFWEMDADLCFAGVSGAYAGSIRDPELYRGRRCEDIAQREAGDGAHWEEHRRTLEDRQPFRDFEFAVRGPDGDTRIWSLSGKPVFDDLGAFVGYRGSGSDVTERRRAERSLTDSERRYRAMFAAVGQPIVVTDQNAVITGFNPAAESLFGFREVEMIGRNVSVLMPDGHAVNHDRLFQEYQSSGRGSPSGVVREVPVRRADGALVPTEIALSSWRAGGREHFIGVFHDLSKAKQIEADLRRARDSAEHANRMKSEFLATISHEIRTPMNGVLGTLTLLDDDGLKPEERRLAGVARRSAESLLRLLDDILDFSKLEAGRIAIEEETCAPADLVEAVMAVFQPSAADKGLTLSCRMLPTVPEAVVTDPARLRQILFNLVGNAVKFTGTGHVAVRAHRGADLPDGRFLLEFEVEDSGIGIAAESIPSLFDRFTQADNSITRRYGGTGLGLAICKELCGLLGGTISVSSAPGKGSLFQFSVACAPGDPATLRHAAEAPSAAPLPPLRILAVDDNAVNRDIVRGLLVRGGHSVVTAADGDEAVRTVERSEEPFDVVLMDVQMPGMDGLTATRLIRALPAPRNGVPVIALTAHASGSSLPECVAAGMNGFVPKPLRPAALDAAIRAVISSPASKPVADAVPETAPVAELLDREQVESVAEALGPESWCEAVRGFSRTAREQVTLISAALANGEEHRRAAHMLKGLSWNVGAKQLGDLALALEKAPPDEALALARSLEGVLKDSVEALSEPLSEPL
>NZ_CP012916.1|WP_035680004.1|783835_784726_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MMALGVAAVIGSTALSSAGFAAANTAEGDKKPVRIGWTAWSDAEAVTKLAQRLIQERLDQPVELVLADIGLQYQGLAKGDLDFMMMSWLPTTHASYLDKVGKDIVPLGMLYTRARLGWAVPDYVPEDQVKTIADLAKPEIREKLKGKIQGIDPGSGLMQASEKALKDYSLDGYELVSASGAAMTAALGRAERREDWIAVTAWSPHWMFAKWKLRYLEDPKGSLGGLERVHVMARKDFYQEHPKVAEFLTRMYLPLEDLEKIMLEADDSSYDKAIDNYIANNKQRVDYWVTGEMPAS
>NZ_CP012916.1|WP_059399564.1|782834_783773_+|proline/glycine-betaine-ABC-transporter-permease
MDFKLPIGDWADAAVMFLLDHAQWLFDGIDLVVGAVADGVQSALTSLPGVALAAIVVLIGLWRNGWRFALFAAAALFVVAGLGMWHQTVDTLALVLTATAIALTIGVPLGIVAARNDRVETVVRPALDLMQTMPAFVYLIPAAMLFGLGRVPGIIATIIFAMPPVVRLTSLGIRQVPHELVEAGLAFGCTPRQLLFKVQMPTALPSIMAGINQTIMLSLSMVVIASMIGAGGVGNEVLRGIQRLDIGLGVEGGLAVVILAILLDRITQSFGTPDAGGRSPRSALRSLLTRRRADPPKDNAHLSPTHGVTEAG
>NZ_CP012916.1|WP_059399563.1|781635_782832_+|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein-ProV
MTAKIAVKGVTRIFGRHPRQALDLLKAGLSKEEIFKRTGQTVGVLDASFEVEAGEIFVIMGLSGSGKSTLVRMLNRLIDPTAGEIRIDGRDITKLSRAELTELRRRDLGMVFQSFALLPHLRVWENAAFGLEIAGESLKARRDKAQQALDAVGLGAYAESYPRELSGGMQQRVGLARALANEPSVLLMDEAFSALDPLIRTEMQDELLRLQAERQRTIVFISHDLDEAIRIGDRLAIMEGGQIIQVGRPDEILKQPANDYVRSFFRNIDVTKILTAGDIARRDQVTLIRHTGEGPRAAVRQLRERDREFGYVQDGRRRFHGVVSVETLVSAIERHNGSATLDEALLPGIEPLPVDLPMDEVLPRIASAPCPLPVVDGQGAYVGAISKTAYLETLGRTR
>NZ_CP012916.1|WP_059399567.1|794692_795379_+|hypothetical-protein
MTAQPRSAPPGGASPSVVTHLPSRPPLPFDPAAPAHERGLALAAALPVPLRTVLASGRVERRPRFGDRGFDGVTEEWTPPDGVSGQHALMARRALDELTGSILAPASPDHLLARVLALLSHYPAKGTAPEVEHLVALDWAEDLGEFPAWAVDAAARTWRRTQKWRPSIAEMRALCEEACAPEWALARRLSSIAVAGSASGGDGAGEGTGHGRAGRLRALAGGAVRRMG
>NZ_CP012916.1|WP_035679943.1|795401_796442_-|DctP-family-TRAP-transporter-solute-binding-subunit
MKSRWTARLLAACTVLALALAAAGVSAETVIKLAHPNRNDAFDNTAGAMAIVFKNHVEVATERRVRVEIFPEGQMGRDGDAVKLVRQGTIQSAISSVGGVAPLYPMLAVIDLPFAYSSVANAYDVFDGPFGHRLAEEIRRKAGLAVLGFGDPGGLFTITNSKRPIRQPEDMKGLKIRTMDLETHRTMIGSLGGTPVNVAWSDLYNALGTGAVDGQMNPVPIVRFARFDEVQRHLTLSNHLFLPYVWVMNAKFLDDLAPSDRAAVMNAARLGVVASRGLSRLIESSDRGLPPLAQRMEVHTLTPREAEAFRKVTQPAVRQAIERRFGAEGVEMLAAFERAIREERTP
>NZ_CP012916.1|WP_079285571.1|796457_798599_-|adenylate/guanylate-cyclase-domain-containing-protein
MSQTPYRIRLRVGIALAFLLTTVPLIAVMLSYLFHENSRSALEVASQSIARTTQTVTNDLNGLVSPVARVAEAMAGFGRIDRNGLRRIESLRYFSDALATLPQLASLYVGFAGDGAFFQMARLAPDGGRFGPAIPPPGSALALRMQDSSSGSFADSYFYLRSWGQVTGVERTEATEDPRTAPWYVAAQTVGTAVMSDAFVLPATRRPVVTVSYRMATDDGVPIGTIGADVSLDRLAARLDALRIGPSGAVFVIDGNGRVICHNRADLLVGGDGTTAALHTTATFPDPVLAEAVERRNGGAGDRFIAPLGPMGHDYIVEFATLADGIGGGWTVGVAVEVDEFVGSLRRATYRIVVIGAGLLAVSILLLLWLSHRLTRPMQDIVSETKRIRHFDLTGRFAVRTRVQEVAELAGAVEAMKGGLRRFGAYVPKALVRDIIVTGDGGELGGETRPLSILFSDIAGFTATSEAMPPQQVLDRLTTYFERMTACIHGHGGTVDKFIGDAIMAFWNAPRPDPDHAEHACLAALGCLSVNRAINDACLAAGMPPMPTRFGLHLGEVVVGNVGSSDRMQYTALGSHVNLASRIEGLNKVYGTSILVTGAVEQAVRGRFLFRPVDLAVPSGLSAPIELFELVGALDPHSAFARPPETHDLCRQWHVAVSLYRGRRWSAALELLQPLAGEPEVAALARLYIARCERLIADPPGDGWDPAEHFKSK
>NZ_CP012916.1|WP_059399568.1|798643_799171_-|GNAT-family-N-acetyltransferase
MSGLRFAPLTSDALGAVLELQRESCGPLMHPLGEAELSDMLAGPAAGHGVVLGALTDRGLAAFLAVQFPGRAAHNLGRDYGLPEGDLDRALHFTGILVHPDRRGQGLHRRLIETAAQGVLPPDRHRYWFATVRPENTASVRGMLSVGMRVFARRPKHDGHDRLLFVRDLSAPAGG
>NZ_CP012916.1|WP_059399569.1|799167_801669_-|MFS-transporter
MASSGAPSGRSGLLRAFLVSVLLVGVTLAFSLSINLGSFRQNHAGTLMAAFAVVGGKTVENVQDALGYGKPLDDFYGLEAILDQLAANLPGARGIGVAVADGRVVAIARGRPVEPVTEATLRRARAELERRPHWFRHDAGNGTYALYLPIRTPGEAERAGRPVDAPAGFLIIQSDSARVDDRVEDFRDRTLPQLLWTGLGTVGFLGLTGLVMAFGLRRAPEGRRVRLERLRRLLALGAMLAAQTAAAAECYTLISTAHLEAAEQATQIVARMIRNDLESVVRRGLDYGSLAGVDGYFERIRASMPTLQSIELALPGTTPPSHDARHIVGGVPFLSDMPDVTLRWPLAQDRGGEARELVAVVDGDRVATQLTEFGLDMATILVTSLLFMFEMDRVLGGRTWMARRSGDGRAVAGGTGNVAGSIRFSAFLMYFGAFLPVSFVPLLMTSFGAEPFPFLSPSQIAAAPLTAEMLCGVAAALAAGRLTGRFGWRAVSLAGFAAAAAGMALAAVAVVAADPLLFVLARGLSGAGGMAGLIAANALIGRLRGVSDTSALQSGLFAGMYAGVNCGAVSGALLSTTYGPVTVFAGGAVIPVAGLLYTAFGVPRLPGAVPPDAHCAPVPSPCGGTVHPRRRRIKVPLFLALISLPTAVAAMFLPFYLPLFIADLGLSSATVGRAYLLHGLCVVLAGPLLTRMAARRLPVPGVTLLSAAMIAGALALFGLQASLWTAFATVFLIGLAESFGLSAQMRHAELLAAREARRRDSVLALHVNTRKLGQAAGPLLFGTLAAAVPLGAGPEGVGMIGGLLAGSLLLFALLTWRRTVPSRTRRSQTEGGR
>NZ_CP012916.1|WP_059399570.1|801671_802853_-|hypothetical-protein
MNPQSSSDASGAAAMTRRGWMAGAAAAGLGVLCPSATALAATRPLPSVRDVPRRWRIGYAESMPYGNYAATLAAILGELERMGWTGGLSGMPYRPGQTDTATLWSWLATHADSPVLDFVADAHATNLTSDGAAALVMRLQEPSDIDLMIVMGTVAGIALATDAHRVPVLAFSCTNPIAAGIVAAETDTGRDHVWAHLDPRRFQRQLSIFHKTFQFRRLGIAYDDSPTGRAIASLPDIEATAERIGFELVERHVRAPIDHLDQYRYEVDLTAAWEALSREADAVYITYGRWPLDRFSSLVRPFLKRRIPTFSQLGPEEVERGALMSIARADMAGIGHFGAATLARVMAGEPLRHLPQVYFDTPSIAWNAATAAAIGYRIPFPALLAADSLHGVL
>NZ_CP012916.1|WP_035679879.1|802849_804031_-|alanine-racemase
MTGTRTGRRGSTTAWADIDLHALGRNLERLRRGLPSGQAVFGVVKADAYGHGAGPVGRALQRFGVDGLVVADMGEGITLRRAGVTAPILVIDPPLQSQLRLPALHRLGATVTSAAEARALATAANRAGRTVDVHVRVNTGFAGFGAAHADLIDVLAAVSVAPALRLEGLYTHLSGVYGPYEDGGLVELERFGEAVDAARGAGLLPPLVHALSSPALDRPLLTNAAARIGCTAVRCGAALFGIRMVDGEGSASLAPVMSVKARVTRVTVLEPGDVADYATAGAAPRRTPVAVLPFGFSDGHHLHRLAGGVLLIRGCPAPILARPFMSSLLADLTDIPSVQPGDEAVLIGRQGDHRITVEDIAARSGLRPSAVPLLGPRVVRRYRTSATGEEPPE
>NZ_CP012916.1|WP_051140718.1|804027_805092_-|patatin-like-phospholipase-family-protein
MPEQILPAPAIQSTSRTSVKPINLALQGGGAHGSFTWGVIDRILEDGRLTIDGIVGTSAGAMNCAVTAYGLTIGGPEGARSKLREFWRRISDEAKKGPLQPTPLDKMFSKGNMDFSPLWQMFDALSRMMSPYELNPMNQNPLRDVLSDVVDFKRLRKAPACKTFIAATDVCAGRLKVFGPKDISVDAVLASACLPFLFQAVQVGNAFYWDGGYSGNPPLFPLIDQCDSRDILIVQINPVRVPVPPRTAREIMDRVNTLSFNSSMMRELRVVDFVSKLIDSGELSPEKHKKMHIHTVDAEEVVEKLGVTSKLNADWDFLTYMFETGRHKAEEFLDQHFDKIGRESSTDISAKFLA
>NZ_CP012916.1|WP_079292173.1|805181_805928_-|sigma-70-family-RNA-polymerase-sigma-factor
MAGSPRLHSHTGENLHELDDSGLLERIATRDQTAFWVFWCRHYTDLFWTYHRLCKGNRQEIHDCLSGLCINLSEALPLYARSIIKTRTWLRRTAINHFIDRHRAHQRHPVLVGSLVEIASIADGTSGRDAMDPERTNADRALLAKVLESLDGIRDERMRQAARMRFIEEQPYADIAAELSISEELARKWIQQIRSYLRSAVPDHRDLLAKPPPDTPQSRRATKHGVLTRTRPPKPPSTPPSKTMKPAL
>NZ_CP012916.1|WP_035679874.1|806820_807579_-|molybdate-ABC-transporter-substrate-binding-protein
MDKTEERPGDAVNLFAAGSLKAVLGELGAMFEAREGIPVTAVFAPSGLLKDRLLWSGEGGLFASANMAHPHALADAGRATAVRPFASNQLCVIAQPEMDVTADTLLDRLLDPTTRLGTSTPQADPAGDYAWDVFRKAEALRPGSFAALDAKALRLTGGPDSESPPEGRNPYGWLMERRKADLFLTYRTNARLAALEIPGLTIIDLPAAIAVGADYGLTVLDGANRPCVEAFADCILSPLGQAVLRRHGFAAP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	86112-86143	0	1.0
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	153930-153961	0	1.0
NZ_CP012916_1	1.2\|154008\|32\|NZ_CP012916\|PILER-CR	154008-154039	32	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	86034-86065	0	1.0
NZ_CP012916_1	1.2\|154008\|32\|NZ_CP012916\|PILER-CR	154008-154039	32	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	154008-154039	0	1.0
NZ_CP012916_2	2.1\|155522\|51\|NZ_CP012916\|PILER-CR	155522-155572	51	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	84501-84551	0	1.0
NZ_CP012916_2	2.1\|155522\|51\|NZ_CP012916\|PILER-CR	155522-155572	51	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	155522-155572	0	1.0
NZ_CP012916_2	2.2\|155606\|45\|NZ_CP012916\|PILER-CR	155606-155650	45	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	84429-84473	0	1.0
NZ_CP012916_2	2.2\|155606\|45\|NZ_CP012916\|PILER-CR	155606-155650	45	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	155600-155644	0	1.0
NZ_CP012916_3	3.1\|793367\|46\|NZ_CP012916\|CRT	793367-793412	46	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	255229-255274	0	1.0
NZ_CP012916_3	3.1\|793367\|46\|NZ_CP012916\|CRT	793367-793412	46	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	793367-793412	0	1.0
NZ_CP012916_3	3.2\|793432\|46\|NZ_CP012916\|CRT	793432-793477	46	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	255164-255209	0	1.0
NZ_CP012916_3	3.2\|793432\|46\|NZ_CP012916\|CRT	793432-793477	46	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	793432-793477	0	1.0
NZ_CP012916_3	3.3\|793497\|51\|NZ_CP012916\|CRT	793497-793547	51	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	255094-255144	0	1.0
NZ_CP012916_3	3.3\|793497\|51\|NZ_CP012916\|CRT	793497-793547	51	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	793497-793547	0	1.0
NZ_CP012916_3	3.4\|793567\|41\|NZ_CP012916\|CRT	793567-793607	41	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	255034-255074	0	1.0
NZ_CP012916_3	3.4\|793567\|41\|NZ_CP012916\|CRT	793567-793607	41	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	793567-793607	0	1.0
NZ_CP012916_3	3.5\|793627\|44\|NZ_CP012916\|CRT	793627-793670	44	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	793627-793670	0	1.0
NZ_CP012916_3	3.5\|793627\|44\|NZ_CP012916\|CRT	793627-793670	44	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	254971-255014	0	1.0
NZ_CP012916_3	3.5\|793627\|44\|NZ_CP012916\|CRT	793627-793670	44	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	600673-600716	2	0.955
NZ_CP012916_3	3.5\|793627\|44\|NZ_CP012916\|CRT	793627-793670	44	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	65907-65950	2	0.955
NZ_CP012916_3	3.5\|793627\|44\|NZ_CP012916\|CRT	793627-793670	44	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	39505-39548	3	0.932
NZ_CP012916_3	3.4\|793567\|41\|NZ_CP012916\|CRT	793567-793607	41	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	125211-125251	4	0.902
NZ_CP012916_3	3.4\|793567\|41\|NZ_CP012916\|CRT	793567-793607	41	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	39445-39485	4	0.902
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	350214-350245	7	0.781
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	367635-367666	7	0.781
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	356453-356484	7	0.781
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	345739-345770	7	0.781
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	356453-356484	7	0.781
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	351843-351874	7	0.781
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	351832-351863	7	0.781
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	356465-356496	7	0.781
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	356486-356517	7	0.781
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	356452-356483	7	0.781
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	350241-350272	7	0.781
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	350239-350270	7	0.781
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	350234-350265	7	0.781
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP021029	Rhizobium sp. TAL182 plasmid pRetTAL182e, complete sequence	103742-103773	8	0.75
NZ_CP012916_1	1.2\|154008\|32\|NZ_CP012916\|PILER-CR	154008-154039	32	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	179901-179932	8	0.75
NZ_CP012916_1	1.2\|154008\|32\|NZ_CP012916\|PILER-CR	154008-154039	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2177578-2177609	8	0.75
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	585491-585522	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	261765-261796	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1694360-1694391	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	394581-394612	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	362889-362920	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	256504-256535	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	127415-127446	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	381265-381296	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	270383-270414	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	1574507-1574538	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	366178-366209	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	542740-542771	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	426442-426473	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	256592-256623	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	517413-517444	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	18267-18298	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	280433-280464	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1620622-1620653	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	256513-256544	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	51859-51890	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	368263-368294	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	976075-976106	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	1359373-1359404	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	367438-367469	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	24273-24304	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	377731-377762	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	364206-364237	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	258251-258282	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	363295-363326	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	380158-380189	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1739820-1739851	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	1234108-1234139	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	715541-715572	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	358303-358334	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	364440-364471	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	367456-367487	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	380158-380189	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	379725-379756	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	364066-364097	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	380157-380188	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1739766-1739797	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	426476-426507	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	359070-359101	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	379725-379756	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	364066-364097	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1731820-1731851	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	278458-278489	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	380158-380189	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	379725-379756	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1670606-1670637	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	359073-359104	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	379729-379760	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	364066-364097	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	364066-364097	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	364066-364097	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	380158-380189	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	1730425-1730456	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	66616-66647	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	380158-380189	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	359073-359104	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	377714-377745	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	377675-377706	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	371057-371088	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	370669-370700	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	362577-362608	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	380158-380189	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	359073-359104	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	379725-379756	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	450747-450778	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	380153-380184	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	359073-359104	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	359073-359104	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	380158-380189	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	364069-364100	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	1712503-1712534	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	380158-380189	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	380158-380189	9	0.719
NZ_CP012916_1	1.1\|153930\|32\|NZ_CP012916\|PILER-CR	153930-153961	32	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	1712503-1712534	9	0.719
NZ_CP012916_2	2.2\|155606\|45\|NZ_CP012916\|PILER-CR	155606-155650	45	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	85920-85964	10	0.778
NZ_CP012916_2	2.2\|155606\|45\|NZ_CP012916\|PILER-CR	155606-155650	45	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	154109-154153	10	0.778
NZ_CP012916_1	1.2\|154008\|32\|NZ_CP012916\|PILER-CR	154008-154039	32	NZ_LR594669	Variovorax sp. SRS16 plasmid 4	254977-255008	11	0.656
NZ_CP012916_1	1.2\|154008\|32\|NZ_CP012916\|PILER-CR	154008-154039	32	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	237641-237672	11	0.656

1. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
cccttgggaacacgatgctggtgggcggcgtc	Protospacer
********************************

2. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 0, identity: 1.0

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
cccttgggaacacgatgctggtgggcggcgtc	Protospacer
********************************

3. spacer 1.2|154008|32|NZ_CP012916|PILER-CR matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

cccttgggaacacgatgcaggtcgacggcgtc	CRISPR spacer
cccttgggaacacgatgcaggtcgacggcgtc	Protospacer
********************************

4. spacer 1.2|154008|32|NZ_CP012916|PILER-CR matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 0, identity: 1.0

cccttgggaacacgatgcaggtcgacggcgtc	CRISPR spacer
cccttgggaacacgatgcaggtcgacggcgtc	Protospacer
********************************

5. spacer 2.1|155522|51|NZ_CP012916|PILER-CR matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

gtggacggtgtcgagacggtgaccggcggactcggcaccgacatggtggaa	CRISPR spacer
gtggacggtgtcgagacggtgaccggcggactcggcaccgacatggtggaa	Protospacer
***************************************************

6. spacer 2.1|155522|51|NZ_CP012916|PILER-CR matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 0, identity: 1.0

gtggacggtgtcgagacggtgaccggcggactcggcaccgacatggtggaa	CRISPR spacer
gtggacggtgtcgagacggtgaccggcggactcggcaccgacatggtggaa	Protospacer
***************************************************

7. spacer 2.2|155606|45|NZ_CP012916|PILER-CR matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

ttgggtggtatcgaaacgctggccggcggcatcggcaccgacgtg	CRISPR spacer
ttgggtggtatcgaaacgctggccggcggcatcggcaccgacgtg	Protospacer
*********************************************

8. spacer 2.2|155606|45|NZ_CP012916|PILER-CR matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 0, identity: 1.0

ttgggtggtatcgaaacgctggccggcggcatcggcaccgacgtg	CRISPR spacer
ttgggtggtatcgaaacgctggccggcggcatcggcaccgacgtg	Protospacer
*********************************************

9. spacer 3.1|793367|46|NZ_CP012916|CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

cctctgctcgccgccggatcgccccccgggcggtgcggacggcagg	CRISPR spacer
cctctgctcgccgccggatcgccccccgggcggtgcggacggcagg	Protospacer
**********************************************

10. spacer 3.1|793367|46|NZ_CP012916|CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 0, identity: 1.0

cctctgctcgccgccggatcgccccccgggcggtgcggacggcagg	CRISPR spacer
cctctgctcgccgccggatcgccccccgggcggtgcggacggcagg	Protospacer
**********************************************

11. spacer 3.2|793432|46|NZ_CP012916|CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

acccgcgggctatcgctccatggtgggcgggtgaacctccgccgaa	CRISPR spacer
acccgcgggctatcgctccatggtgggcgggtgaacctccgccgaa	Protospacer
**********************************************

12. spacer 3.2|793432|46|NZ_CP012916|CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 0, identity: 1.0

acccgcgggctatcgctccatggtgggcgggtgaacctccgccgaa	CRISPR spacer
acccgcgggctatcgctccatggtgggcgggtgaacctccgccgaa	Protospacer
**********************************************

13. spacer 3.3|793497|51|NZ_CP012916|CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

agtcccgcgcaccggccgcagcctatggctccaacgaccgcgaatccggag	CRISPR spacer
agtcccgcgcaccggccgcagcctatggctccaacgaccgcgaatccggag	Protospacer
***************************************************

14. spacer 3.3|793497|51|NZ_CP012916|CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 0, identity: 1.0

agtcccgcgcaccggccgcagcctatggctccaacgaccgcgaatccggag	CRISPR spacer
agtcccgcgcaccggccgcagcctatggctccaacgaccgcgaatccggag	Protospacer
***************************************************

15. spacer 3.4|793567|41|NZ_CP012916|CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

gggcgcgggtttccactccaggattccgattcggcgatgaa	CRISPR spacer
gggcgcgggtttccactccaggattccgattcggcgatgaa	Protospacer
*****************************************

16. spacer 3.4|793567|41|NZ_CP012916|CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 0, identity: 1.0

gggcgcgggtttccactccaggattccgattcggcgatgaa	CRISPR spacer
gggcgcgggtttccactccaggattccgattcggcgatgaa	Protospacer
*****************************************

17. spacer 3.5|793627|44|NZ_CP012916|CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 0, identity: 1.0

agcggcgggcaaaggctccaggagcgcgggccagggcttcaacg	CRISPR spacer
agcggcgggcaaaggctccaggagcgcgggccagggcttcaacg	Protospacer
********************************************

18. spacer 3.5|793627|44|NZ_CP012916|CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

agcggcgggcaaaggctccaggagcgcgggccagggcttcaacg	CRISPR spacer
agcggcgggcaaaggctccaggagcgcgggccagggcttcaacg	Protospacer
********************************************

19. spacer 3.5|793627|44|NZ_CP012916|CRT matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 2, identity: 0.955

agcggcgggcaaaggctccaggagcgcgggccagggcttcaacg	CRISPR spacer
ggtggcgggcaaaggctccaggagcgcgggccagggcttcaacg	Protospacer
.*.*****************************************

20. spacer 3.5|793627|44|NZ_CP012916|CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 2, identity: 0.955

agcggcgggcaaaggctccaggagcgcgggccagggcttcaacg	CRISPR spacer
aacggcgggcaaaggctccaggagcgcgagccagggcttcaacg	Protospacer
*.**************************.***************

21. spacer 3.5|793627|44|NZ_CP012916|CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 3, identity: 0.932

agcggcgggcaaaggctccaggagcgcgggccagggcttcaacg	CRISPR spacer
ggcggcgggcaatggctccaggagcgcgggccagggcttcaatg	Protospacer
.*********** *****************************.*

22. spacer 3.4|793567|41|NZ_CP012916|CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 4, identity: 0.902

gggcgcgggtttccactccaggattccgattcggcgatgaa	CRISPR spacer
gaccgcgggttcccgctccaggattccgattcggcgatgaa	Protospacer
*. ********.**.**************************

23. spacer 3.4|793567|41|NZ_CP012916|CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 4, identity: 0.902

gggcgcgggtttccactccaggattccgattcggcgatgaa	CRISPR spacer
gaccgcgggttcccgctccaggattccgattcggcgatgaa	Protospacer
*. ********.**.**************************

24. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccttgg---gaacacgatgctggtgggcggcgtc	CRISPR spacer
---ttgaactgaacacgatgatggcgggcggcggc	Protospacer
   ***.   ********** ***.******** *

25. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 7, identity: 0.781

cccttgg---gaacacgatgctggtgggcggcgtc	CRISPR spacer
---ttgaactgaacacgatgatggcgggcggcggc	Protospacer
   ***.   ********** ***.******** *

26. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccttgg---gaacacgatgctggtgggcggcgtc	CRISPR spacer
---ttgaactgaacacgatgatggcgggcggcggc	Protospacer
   ***.   ********** ***.******** *

27. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccttgg---gaacacgatgctggtgggcggcgtc	CRISPR spacer
---ttgaactgaacacgatgatggcgggcggcggc	Protospacer
   ***.   ********** ***.******** *

28. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 7, identity: 0.781

cccttgg---gaacacgatgctggtgggcggcgtc	CRISPR spacer
---ttgaactgaacacgatgatggcgggcggcggc	Protospacer
   ***.   ********** ***.******** *

29. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccttgg---gaacacgatgctggtgggcggcgtc	CRISPR spacer
---ttgaactgaacacgatgatggcgggcggcggc	Protospacer
   ***.   ********** ***.******** *

30. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccttgg---gaacacgatgctggtgggcggcgtc	CRISPR spacer
---ttgaactgaacacgatgatggcgggcggcggc	Protospacer
   ***.   ********** ***.******** *

31. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccttgg---gaacacgatgctggtgggcggcgtc	CRISPR spacer
---ttgaactgaacacgatgatggcgggcggcggc	Protospacer
   ***.   ********** ***.******** *

32. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccttgg---gaacacgatgctggtgggcggcgtc	CRISPR spacer
---ttgaactgaacacgatgatggcgggcggcggc	Protospacer
   ***.   ********** ***.******** *

33. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccttgg---gaacacgatgctggtgggcggcgtc	CRISPR spacer
---ttgaactgaacacgatgatggcgggcggcggc	Protospacer
   ***.   ********** ***.******** *

34. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccttgg---gaacacgatgctggtgggcggcgtc	CRISPR spacer
---ttgaactgaacacgatgatggcgggcggcggc	Protospacer
   ***.   ********** ***.******** *

35. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccttgg---gaacacgatgctggtgggcggcgtc	CRISPR spacer
---ttgaactgaacacgatgatggcgggcggcggc	Protospacer
   ***.   ********** ***.******** *

36. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccttgg---gaacacgatgctggtgggcggcgtc	CRISPR spacer
---ttgaactgaacacgatgatggcgggcggcggc	Protospacer
   ***.   ********** ***.******** *

37. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP021029 (Rhizobium sp. TAL182 plasmid pRetTAL182e, complete sequence) position: , mismatch: 8, identity: 0.75

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
ggctgtggaacacgatgctggtggccgtcggg	Protospacer
  **  ****************** ** **

38. spacer 1.2|154008|32|NZ_CP012916|PILER-CR matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccttgggaacacgatgcaggtcgacggcgtc	CRISPR spacer
tcggcacgaacacgatgcagatcgacagcgtc	Protospacer
.*  .. *************.*****.*****

39. spacer 1.2|154008|32|NZ_CP012916|PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccttgggaacacgatgcaggtcgacggcgtc	CRISPR spacer
tcggcacgaacacgatgcagatcgacagcgtc	Protospacer
.*  .. *************.*****.*****

40. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
gtgccgacaacacgattctggtgagcggcgtc	Protospacer
 . ..*. ******** ******.********

41. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

42. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

43. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

44. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

45. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

46. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

-----cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
acaagcc-----gatcacgatgctggtgggcgccgcg	Protospacer
     **     ** ***************** **.

47. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

48. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

49. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

50. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

51. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

52. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

53. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

54. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

55. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

56. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

57. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

58. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

59. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

60. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

61. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

62. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

63. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

64. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

65. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

66. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

67. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

68. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

69. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

70. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

71. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
atccgcgccacacgatgctgctggtcggcgtc	Protospacer
 .*.  *  *********** *** *******

72. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

73. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

74. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

75. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

76. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

77. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

78. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

79. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

80. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

81. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

82. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

83. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

84. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

85. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

86. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

87. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

88. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

89. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

90. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

91. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

92. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

93. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

94. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

95. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

96. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

97. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
atccacgccacacgatgctgctggtcggcgtc	Protospacer
 .*.  *  *********** *** *******

98. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

99. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

100. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

101. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

102. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

103. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

104. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

105. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

106. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

107. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

108. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

109. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

110. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

111. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

112. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

113. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

114. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

115. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

116. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

117. spacer 1.1|153930|32|NZ_CP012916|PILER-CR matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

cccttgggaacacgatgctggtgggcggcgtc	CRISPR spacer
tcgagctgaacacgatgatggcgggcggcggc	Protospacer
.*     ********** ***.******** *

118. spacer 2.2|155606|45|NZ_CP012916|PILER-CR matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.778

ttgggtggtatcgaaacgctggccggcggcatcggcaccgacgtg	CRISPR spacer
gtgttccggctggagacgctgaccggcggcatcggcaccgacgtg	Protospacer
 **  . *  * **.******.***********************

119. spacer 2.2|155606|45|NZ_CP012916|PILER-CR matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 10, identity: 0.778

ttgggtggtatcgaaacgctggccggcggcatcggcaccgacgtg	CRISPR spacer
gtgttccggctggagacgctgaccggcggcatcggcaccgacgtg	Protospacer
 **  . *  * **.******.***********************

120. spacer 1.2|154008|32|NZ_CP012916|PILER-CR matches to NZ_LR594669 (Variovorax sp. SRS16 plasmid 4) position: , mismatch: 11, identity: 0.656

cccttgggaacacgatgcaggtcgacggcgtc	CRISPR spacer
tgggctggaacacgaagctggtcgacggccga	Protospacer
.   . ********* ** **********

121. spacer 1.2|154008|32|NZ_CP012916|PILER-CR matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 11, identity: 0.656

cccttgggaacacgatgcaggtcgacggcgtc	CRISPR spacer
tgggctggaacacgaagctggtcgacggccga	Protospacer
.   . ********* ** **********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP012914

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012914_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012914_1

1966418-1966505

Unclear

Consensus_repeat	Method
CGGTCACGACCACCATCACCATGAC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP012914_1

>merge|NZ_CP012914|1|1966418-1966505|CRISPRCasFinder
TGGGCACGACCATGATCACGGTCACGACCACCATCACCATGACCACGGGCACGGCGACGCCTGCGGTCCCGACTGCGGTCACGACCAC

>NZ_CP012914|1|1|1966418-1966505|CRISPRCasFinder
TGGGCACGACCATGATCACGGTCAC	GACCACCATCACCATGACCACGGGCACGGCGACGCCTG
CGGTCCCGACTGCGGTCACGACCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012914.1\|WP_079285212.1\|1972448_1973483_-\|conjugal-transfer-protein-TraG	unknown	unknown	gnl\|CDD\|206779
NZ_CP012914.1\|WP_059398823.1\|1973682_1975074_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP012914.1\|WP_035674169.1\|1957412_1959890_+\|ligase-associated-DNA-damage-response-DEXH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|274994
NZ_CP012914.1\|WP_059398820.1\|1963034_1965068_+\|PhoX-family-phosphatase	unknown	unknown	gnl\|CDD\|225752
NZ_CP012914.1\|WP_035674155.1\|1966957_1968541_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012914.1\|WP_059398822.1\|1972115_1972349_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012914.1\|WP_035674171.1\|1954697_1955048_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012914.1\|WP_035674090.1\|1971086_1971911_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293801
NZ_CP012914.1\|WP_035674176.1\|1953040_1953367_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012914.1\|WP_035674078.1\|1976999_1977455_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226903
NZ_CP012914.1\|WP_158283111.1\|1955138_1955483_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP012914.1\|WP_035674138.1\|1969732_1970974_-\|transporter	unknown	unknown	gnl\|CDD\|238537
NZ_CP012914.1\|WP_051140252.1\|1959895_1960579_+\|ligase-associated-DNA-damage-response-endonuclease-PdeM	unknown	unknown	gnl\|CDD\|274996
NZ_CP012914.1\|WP_059398818.1\|1953369_1954209_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|234689
NZ_CP012914.1\|WP_035674163.1\|1961440_1962898_+\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|223492
NZ_CP012914.1\|WP_035674083.1\|1975236_1976172_-\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|181919
NZ_CP012914.1\|WP_035674080.1\|1976206_1976818_-\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|235555
NZ_CP012914.1\|WP_035674166.1\|1960684_1961173_-\|fasciclin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225214
NZ_CP012914.1\|WP_035674160.1\|1965189_1965696_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP012914.1\|WP_059398821.1\|1968552_1969569_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133028

Protein	Function_ID	Function_description	E-value
NZ_CP012914.1\|WP_079285212.1\|1972448_1973483_-\|conjugal-transfer-protein-TraG	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	1.40046e-13
NZ_CP012914.1\|WP_059398823.1\|1973682_1975074_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.92457e-37
NZ_CP012914.1\|WP_035674138.1\|1969732_1970974_-\|transporter	gnl\|CDD\|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	1.4062e-91
NZ_CP012914.1\|WP_059398820.1\|1963034_1965068_+\|PhoX-family-phosphatase	gnl\|CDD\|225752	COG3211, PhoX, Predicted phosphatase [General function prediction only].	0
NZ_CP012914.1\|WP_035674169.1\|1957412_1959890_+\|ligase-associated-DNA-damage-response-DEXH-box-helicase	gnl\|CDD\|274994	TIGR04121, ATP-dependent_helicase, DEXH box helicase, DNA ligase-associated. Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H.	0
NZ_CP012914.1\|WP_035674078.1\|1976999_1977455_+\|membrane-protein	gnl\|CDD\|226903	COG4520, LipA, Surface antigen [Cell envelope biogenesis, outer membrane].	3.98276e-15
NZ_CP012914.1\|WP_158283111.1\|1955138_1955483_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.9706e-14
NZ_CP012914.1\|WP_035674090.1\|1971086_1971911_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293801	cd07715, TaR3-like_MBL-fold, MBL-fold metallo-hydrolase domain of Myxococcus xanthus TaR3 and related proteins; MBL-fold metallo-hydrolase domain. Myxococcus xanthus Tar3 may function as an ammonium regulator/effector protein involved in biosynthesis of the antibiotic TA. Some are members of this subgroup are annotated as ribonucleases. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.40033e-110
NZ_CP012914.1\|WP_051140252.1\|1959895_1960579_+\|ligase-associated-DNA-damage-response-endonuclease-PdeM	gnl\|CDD\|274996	TIGR04123, hypothetical_protein, metallophosphoesterase, DNA ligase-associated. Members of this protein family are an uncharacterized putative metallophosphoesterase associated with a DNA ligase, a helicase, and a putative exonuclease. It may play a role in DNA repair. Its system is present in about 12 % of prokaryotic reference genomes.	1.51231e-86
NZ_CP012914.1\|WP_059398818.1\|1953369_1954209_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	7.78125e-27
NZ_CP012914.1\|WP_035674163.1\|1961440_1962898_+\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	0
NZ_CP012914.1\|WP_035674083.1\|1975236_1976172_-\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|181919	PRK09509, fieF, CDF family cation-efflux pump FieF.	5.26199e-102
NZ_CP012914.1\|WP_035674080.1\|1976206_1976818_-\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|235555	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase.	1.89089e-120
NZ_CP012914.1\|WP_035674166.1\|1960684_1961173_-\|fasciclin-domain-containing-protein	gnl\|CDD\|225214	COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane].	4.85767e-56
NZ_CP012914.1\|WP_035674160.1\|1965189_1965696_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	3.30108e-38
NZ_CP012914.1\|WP_059398821.1\|1968552_1969569_-\|glycosyltransferase	gnl\|CDD\|133028	cd04185, GT_2_like_b, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	3.16766e-56

>NZ_CP012914.1|WP_035674160.1|1965189_1965696_+|transcriptional-repressor
MTTDPHSTAGPASRHGHDHAHCIADALTRADALCAERGARLTALRRQVLELVWNSHKPRGAYAILEDLSQREGKATAPLTVYRALEFLVEHGLVHRIESLNAYIGCAAPGAVHSGQFLVCETCGNAVEIDDPRIRAAIGTIATEHGFQVSRPTVEVRGTCTDCQEKTP
>NZ_CP012914.1|WP_059398820.1|1963034_1965068_+|PhoX-family-phosphatase
MDTHDLPQKGTKYLTFEGREDIGSNPSENPTMGDVINARLGRRDMMRGMLSGAAVSALIGPAALLSPTRGAEAAVTGAPRPAKASFSFQEVAHGVDADHHVASGYNADILIRWGDPVVPGAPAFDPMNQTAEAQSKQFGYNNDFVGYAPLPLGSRSPDRALLCVNHEYTDEEVMFPGVGVEQQKDKFARMTKALVDIEMAAHGGTVVEIRKVRGKWVTVADSRYNRRITGETACAITGPAAGHALMKTSYDPTGTMVRGMLNNCSGGMTPWGTWLSAEENFNGYFWGKVEDTNPNAKVLKRYGFPGEWYNWGVHHDRFDIAKEPNESNRFGWIVEIDPYDPTSTPKKRTALGRFKHEACQIALGKDGTVVAYTGDDERFDYVYKFVAAKKFDPRNRAANMDILETGTLYVAKFKADASVEWLPLVHGQGPLTAEKGFPDQATVLINARLAADALGATKMDRPEDIEVNAVTGKVYVILTNNSRRKPEQVDATNPRAENNWGHIVEILPDNGNHAATKAEWTILVRGGNPADGTVGAQFHADTSANGWFSCPDNAAVDHRGRLWITTDQGENWKKASGTADGVWAVETEGNLRGLSKMFYRVPVGAEMCGPCFTTDDKTLFVAVQHPATDGVDQWEGFKGKLSSFEDPATRWPDFKPNMPPRPSVVAITKKDGGVIGL
>NZ_CP012914.1|WP_035674163.1|1961440_1962898_+|deoxyribodipyrimidine-photo-lyase
MTTDQSPILVWFRNDLRLADNPALSAAAEDGAPVIPVYIREKDAHDPWLPGAASRWWLHGSLERLGKALAKLGSPLVLRSGDPAAVLAALAEETGADTVLCNRRAGPTAIARDRRVGERLSARGVTVHPHNAALLFEPGSIRTKSDTPFRVFTPFWKALLSMPEPPHPTHAPGKLTPPAKPVSSESLKDWGLLPTAPDWAGGLRERWEPGEEAARERLADFLDGPVAAYPAERDRPDHDGTSAMSPHLAFGEIGPRQIWHATRHAADQRHELAAGAEAFLRELGWREFNHHLLREEPGIPDTPLDARFARFPWRTDKAGLRAWQRGRTGYPIVDAGMRQLWQTGWMHNRVRMIVGSFLIKDLLIPWQEGEAWFWDTLVDADIANNAGNWQWVAGCGADAAPFFRVFNPILQGEKFDPEGNYVRRYVPELEKLPNRWIHKPWEAPDEALRQAGVKLGKDYPRPIVDHGTARDRALAAFQEIKKAGD
>NZ_CP012914.1|WP_035674166.1|1960684_1961173_-|fasciclin-domain-containing-protein
MSRLSRLLTAATVALPLSLAAISAKAADIVDTAVAAGQFKTLVQAVQAAGLADTLKGNGPFTVFAPTDEAFAKLPAGTVENLLKPENREKLRSVLTYHVVSGKVTSADIAGKTASPKTVQGTTVDIDATKGGVMVDNAKVVKPDIMASNGVIHVIDTVMMPN
>NZ_CP012914.1|WP_051140252.1|1959895_1960579_+|ligase-associated-DNA-damage-response-endonuclease-PdeM
MDTTMTLRGAALAPDASGALVWPAERTLVVADLHLEKGSAFAARGRMLPPYDTRATLGRLADLVERLAPERVICLGDSFHDRRAASRMEAGDVARLRDLTGRVADWLWVTGNHDPEPPEGFGGRILDELALGPLTFRHEAVPGAVGELSGHLHPVAAVVVPGRRVRERCFAFDGGKLILPAFGAFAGGLNVLDPAVSGLLAARFEVHLLARGKVHRFPRSRLSPDKA
>NZ_CP012914.1|WP_035674169.1|1957412_1959890_+|ligase-associated-DNA-damage-response-DEXH-box-helicase
MPLPIPLLPANVQGWFRSRGWEPHPHQLAMVEAAAAGDSALLIAPTGGGKTLAGFLPSLIDLAERPREGLHTLYISPLKALAVDIQRNLEEPVAEMRLPIRTETRTGDTPESKRRRQRANPPHILMTTPESLALMIAYADAATIFRHLRCVIIDELHALAGTKRGDLLALGLARLSRLAPQARRVGLSATVAEPAQLLAWLSKTGQADGGDVRLVTGRAGASAEVEILTTRERLPWSGRMAMHALKEVYQRIRAHRTTLVFVNTRAQAELVFQELWRRNDDSLPIALHHGSLAAEQRRKVEAAMAAGKLRAVVATSSLDLGIDWAAVDLVVQIGAPKGASRLVQRIGRANHRLDEPSRALLVPANRFEVLECRAALDAVAAMSLDGERPRPGGLDVLAQHMLGMACAEPYRPDDLYDEVVCAAPYAGLARDEFDDVLDFVATGGYALGNYERFHRLKLREDGRMAVAGPAVARQYRMNVGTITQEAMLRVRLSRGPVLGEVEEHFIQGLTPGDTFVFAGQLLKFLGIREMEAQVAKGGSGEPKVPAYAGGRLPLTTALADRVRAMLADPAQWSGLPEDVQEWLRLQRWRSVLPARDGLLVESFPKAGKRFLVVYAFEGRNAHQTLGMLLTRRMERMGCGPLGFVATDYVLAVWSLRTPTNSNGDMDGLFDQDMLGDDLEAWMDESSMLRRTFRNVALITGVIDRRHPGQEKSGRQVTFSSDLIYDVLRKHDPGHVLLRATRADAAGGLTDVRRLSDFLIRVKGRITHKDLDRISPLAVPVILEIGRERVDGSATDELLEQAAADLVAEAMPELGSDGDSQGRLTL
>NZ_CP012914.1|WP_158283111.1|1955138_1955483_+|helix-turn-helix-domain-containing-protein
MERTQEFGRMLRTLREQRNLTQEDLAELIDRSVQAVSKMERGLTLPKLETLIRISEKLNVPLRELVSAFDPNESADQTRISFEALIIESSRRLDIRDLSIVAKVVDAFPNKKKS
>NZ_CP012914.1|WP_035674171.1|1954697_1955048_-|hypothetical-protein
MRLSGVLLIIWGGLLVPLTLPWTWGYRKQLGLIASLDEMTMSFLGDRLSYAYVVSFSVILVGLGLSWIAFATVWDPPYPRARGVSEKEQAPPSTTPRKSSLEEVMGDRPIDPMRLH
>NZ_CP012914.1|WP_059398818.1|1953369_1954209_+|methyltransferase-domain-containing-protein
MPDLSTCPIDGDAERARWTASADAWDRWADPMADLADKLNQPLLDAAGVTAGDRVLDLASGAGEPALSAALRTGPDGLVVGSDLVPGMMAGARRRAAGIADGLRPAFAAADMTALPFAAASFDRVTCRFGIMFVPDVAAALAELRRVLRPGGRAAFMVWGPRAGNALFDTVGDAVAAQLGEDRSLDPLFRFAAPGLLAEAMRAAGFATVSETDITPVRKAPQGQPFWRATLEMSFGHRLHDLTAGQRADLDAEVTRRFDAQAQGGTIPLPIHVRIVAGA
>NZ_CP012914.1|WP_035674176.1|1953040_1953367_+|hypothetical-protein
MELPSGDWIWALAIAALLTGATVSVIVLAAVGSIRRSVNEGAARQSQQIRKLAETVATLNAQQQAAEGRVQALTEANRKLAEEVAALNERLRDADSAPRITGTARLLH
>NZ_CP012914.1|WP_035674155.1|1966957_1968541_-|hypothetical-protein
MFRDFTLDGRAASRAESVYVWPAALLILVAASIPVWMFEIPALGDYVNHVTRMYALAHLDQDPALAQFYMVRWAIIPNLVMDIVVPPLAKLIGVHTASRLFVTASYLVLVTGSIALYRAVWGRVELGPLAAGLFLYTLSTYMGLFNYLFGLGLALWGIAGWIVMRERAPWQRGLASLGVVLLLFISHLFALGLYGLTLLAFEGWRLWQSGGWREPRRALPDALAFGLPFLIVPPLLLMSPSSGFADAVLWVGTAKLMGFDFLFGGYADTVGYVTGIAVGLGIAWGLWSGALRLHPVGAITIALGLVVYAAMPLVLFGSWFADSRLPIGIAFVALGFVRWELATSAMRAGFLAVVVALSLLRSADAGVGLAKVDPLLEEVRQSLQRIEPGSTVLATYADETLHKSIFRATQFTDDRALSFGLHHAPVLALMERSSLVPIAFTHPGKQVLLLKPDYADLDGDFTYMPRIGYVADAVRQPGLRDNHYWADWPRRFGYVYVLFSEPGRANPVPEHLTLVQEGRYFQLYKVK
>NZ_CP012914.1|WP_059398821.1|1968552_1969569_-|glycosyltransferase
MSEAQTPRTLDTGAQERPRETPWETPVVAVVVTHNRLALLKTCLAAIHGQEPRPDRIVVVDNGSSDGTAEWLAEQRVVMPELLVVRQANIGSAGAYHTAFATALELGARWIWSTDDDGIPAPGALAELLRQGERHDLDLVGPTVVAAEDRGDLAFTMQGFTKADAFTAAAQDGIVPGTIALFNGTLLRRRVFERIGNIKREMFIWGDEWEFTLRARRAGLRDGTAVHALHVHPRNRRTQRPLAGGFLGTVEEMPENRAPYFFRNMGYIHATYERKSIARMMVKYTLYYLLHRRADVKGLRGFWTHYRAGLQNRYPQDLQASPTAAAPAVPPQSYPKSV
>NZ_CP012914.1|WP_035674138.1|1969732_1970974_-|transporter
MTLTVVALFVITYVGMALGRFPGLRIDRTGIALVAAILLLAIGALESGQVTEAIDFPTLFILFGLMVLSAQYAASGFYDWCALRVAQAARSPARLLAVTVAVGGGLSAILANDVVVFAMTPMLCVGLLARRLDPRPYLIGLAGAANAGSAATVIGNPQNILIGQMGHLDFWRFLAVCGVPALVGLVVVYVVVWLAWRGRFGEPEDHTTGEGGAEPVTLDRAQLGKAVVATLVLLGLFTTDLPHEIGVLLVAGAMLISRRLASRGMLGMVDWHLLVLFAALFAINHALKLTGLPAEFVSGLEAAGWLPDRLAVMTPLALAASNSIGNVPAVILLLAAWPSPPEGALYGLAILSTLAGNLLIPGSLANIIVVERAAASGVRLGFVEHARCGIPMTLLSMGFAVLWLWGTGWMRLS
>NZ_CP012914.1|WP_035674090.1|1971086_1971911_-|MBL-fold-metallo-hydrolase
MGFSVTFWGVRGTVPCPLPSHMGFGGNTSCVEVQAGDQRIVIDAGTGIRMLGKRLLKESATEATLLMSHTHLDHICGFPFFAPAYSKGFHLRIVSGHLKGNPGIEATMARQMERPLFPVPMRTMGSNIVFDEITAGDRFALGEGVQVRTALLNHPDGATGYRIEHLGKSFAYVTDTEHVPGHPDRNILDLIDGADLVLYDSTYTDEEWQNRIGWGHSTWTEGVRLAQAAGVKQLVLFHHDPDHDDAVMTAIEAAAQAVFPDCFAAREGMTVTLA
>NZ_CP012914.1|WP_059398822.1|1972115_1972349_-|hypothetical-protein
MQALRQIVTVPEQEDDLVAEAIRDVLVADVIDQATKDRLVDGLTVLKAGLACPDTGCTGCYHRRSCERFIESILWTS
>NZ_CP012914.1|WP_079285212.1|1972448_1973483_-|conjugal-transfer-protein-TraG
MPERIVALSRAVSDLATRKMDEIQAVTNTTKILALNALIEAMRAGEAGRGFAVVAQEVKAISERITGIGGELRAQMAVQTDELNTLGNRLVSQLRGGRLADLALNMIDIMDRNLYERSCDVRWWATDSAMVDCAADPSEANRRHAAQRLGVILGAYTVYLDLWVIDARGVVLANGRPDRYRRAVGGSVASESWFREAMATRSGTEFAVADIGTSDLLERATVATYATAIRAGGEESGPVIGVLGVFFDWQKQSQSVVDSVRLTDEERSRSRCLLVDSRHRVIAASDRRGVLTESFPLRTGGHGHGSYSDEQRRVVGFAVTPGYETYNGLGWFGVIVQDSVGSCE
>NZ_CP012914.1|WP_059398823.1|1973682_1975074_-|methyl-accepting-chemotaxis-protein
MDSAIGGRSHLIADIATEAGNLGIEIADIAGHVEEVNGRLGHQANVFAQLRGTGNKMSESTQRISAAATVARSVTEQARQEVESSHDRVQRSMDDIHALVAAVGGIEGQIAGLQEALDRVGRVAKEIFVIAKQTNLLALNATIEAARAGEAGRGFAVVANEVKALSKKTSEATTEIDATLKYLNDQAQRLMAESAASAGKARAVSEGTTAIGAVIETVGRAMSELNGETDKIDAASSEIGANCDELQHEIDDLAVGVQLSSDNLAQARDRVNTLVGMSERLIGITAELDVETVDTPFIRMVSDAASRISADFEDALARGEVREGDLFDSNYQPIPGSNPQQHMTRFTEFCDRMLPRVLDSLLGQSERIVFCVAVDSNGYLPTHNRRFSQPQGADPTWNAANCRNRRIFNDRVGLAAGRSTKPFLLQTYRRDMGGGQYALMKDVSAPITVRGRHWGGLRLAYKV
>NZ_CP012914.1|WP_035674083.1|1975236_1976172_-|cation-diffusion-facilitator-family-transporter
MSEARLHRLRRYATYASVSVSLTLILAKLAAYLATDSVSILSSLIDSSTDMMASVVTLLGVRTALRPPDEAHRFGHGKAEALAALAQAAFIGGSALFLTIEAVRRLITPQPVGEGAVGIAVMLLSILLTAGLITFQRHVVTATGSVAVGADRLHYSGDLLMNAAVILAILLTGWTGISAFDPLFGLGIAAFLLYGARKVAREALNVLMDRELPAEERERIAALVMAQPDVAGMHDLRTRSSGIGAFIELHLELDPLLSVARAHDITDRVEASLREAFPGAEVLIHQEPAGLQDERLDHRIADGRVGEDGAG
>NZ_CP012914.1|WP_035674080.1|1976206_1976818_-|pyridoxamine-5'-phosphate-oxidase
MSESNDRDPYALFQDWMDEATRSEINDPNAMALATADAQGAPSVRMVLLKGVDPRGFVFYTNTESRKGEQLLANANAALCFHWKTLKRQVRVEGAVEQVSDSEADAYFESRPRESRIGAWASQQSRPLEGRFELEKRVAQFAAKFGLGAVPRPPHWTGFRILPRRIEFWQDRPFRLHERILYLREGDPAAQEPARWTTERLFP
>NZ_CP012914.1|WP_035674078.1|1976999_1977455_+|membrane-protein
MFVKKLVPAAMAIALLAGCVSTSQEATKNAETVGGRISSTYGNASGKVASSGTGPLLGAFIGGAAIQPSDAAAAETAAKRAYAAPVGDKIGWTNPATGHYGSLTTTREGYNNAGQYCREFHQTVTTKSQTELAYGTACKQADGTWKIVANS

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Crispr_ID: NZ_CP012914_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012914_2

2425440-2426609

TypeI

I-C

Consensus_repeat	Method
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CRT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	PILER-CR
GTTTCAATCCACGCCCTCGCACGGAGGGCGAC	CRISPRCasFinder

17 spacers

cas2,cas1,cas4,cas7b,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP012914_2

>merge|NZ_CP012914|2|2425440-2426609|CRT,PILER-CR,CRISPRCasFinder
CTTGAGGAAGCAGCCCTCGCACGAAGGGCGACTACTGCCTGTTCGTCGACGAGGCCCACCGCTACAAGTTTCAATCCACGCCCTCGCACGGAGGGCGACGTTGTGAAGTCCAGCACGGACCCGGTGCAGGTGGCGTTTCAATCCACGCCCTCGCACGGAGGGCGACACGACGCCTGGAAGCAGGCCGCTGTGTGGAAGGTGTTTCAATCCACGCCCTCGCACGGAGGGCGACGCCTTGGCGGCGTCGAAGTCCATCCACACGACGGTGTTTCAATCCACGCCCTCGCACAGAGGGCGACCCTCAACGGCGTGGCGTCGAGCATCGCGACCGCACTGTTTCAATCCACGCCCTCGCACAGAGGGCGACCGCTGCCGAGCAACACGCCGCCCCGGCCAGCCCGGTTTCAATCCACGCCCTCGCACAGAGGGCGACGTCCGGTGCCCAGGCTGTCCCCGGCCTGGAGCGTGTTTCAATCCACGCCCTCGCACAGAGGGCGACGAAACTCCGCGGCCACTCCCGCCCCCACAGGATCGTGTTTCAATCCACGCCCTCGCACAGAGGGCGACCGCGCCATCCTCGCCTGAGGGGCCAGATGAGGAGGGTTTCAATCCACGCCCTCGCACAGAGGGCGACAGGCCGCCCCAGGACTTCATGAGGCCGGACTTGTGTTTCAATCCACGCCCTCGCACAGAGGGCGACGACCGCCGTGAAGCTAGAGTTTCGATAGTGGTTAGCGTTTCAATCCACGCCCTCGCACAGAGGGCGACGCGCCCATGACGAAGCTCGCTGACATTTGCCGCAAGTTTCAATCCACGCCCTCGCACAGAGGGCGACATGCGGGTCTACCGCCATGGATCGACCGAGCGCCAGTTTCAATCCACGCCCTCGCACAGAGGGCGACCGCGCCGAAACGTGCCATGCCCACGCTGGCAGCAGTTTCAATCCACGCCCTCGCACAGAGGGCGACCGCGCCGAAACGTGCCATGCCCACGCTGGCAGCAGTTTCAATCCACGCCCTCGCACAGAGGGCGACGTGACGTGCGTTGGGGCGAGCGTGCACACCTTCCTGTTTCAATCCACGCCCTCGCACAGAGGGCGACGGCCGTGAGCTGGACGATCTTGTACTGAGAGGGGATGGTTTCAATCCACGCCCTCGCACAGAGGGCGAC

>NZ_CP012914|2|1|2425440-2426609|CRT
CTTGAGGAAGCAGCCCTCGCACGAAGGGCGAC	TACTGCCTGTTCGTCGACGAGGCCCACCGCTACAA
GTTTCAATCCACGCCCTCGCACGGAGGGCGAC	GTTGTGAAGTCCAGCACGGACCCGGTGCAGGTGGC
GTTTCAATCCACGCCCTCGCACGGAGGGCGAC	ACGACGCCTGGAAGCAGGCCGCTGTGTGGAAGGT
GTTTCAATCCACGCCCTCGCACGGAGGGCGAC	GCCTTGGCGGCGTCGAAGTCCATCCACACGACGGT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CCTCAACGGCGTGGCGTCGAGCATCGCGACCGCACT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CGCTGCCGAGCAACACGCCGCCCCGGCCAGCCCG
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GTCCGGTGCCCAGGCTGTCCCCGGCCTGGAGCGT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GAAACTCCGCGGCCACTCCCGCCCCCACAGGATCGT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CGCGCCATCCTCGCCTGAGGGGCCAGATGAGGAGG
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	AGGCCGCCCCAGGACTTCATGAGGCCGGACTTGT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GACCGCCGTGAAGCTAGAGTTTCGATAGTGGTTAGC
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GCGCCCATGACGAAGCTCGCTGACATTTGCCGCAA
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	ATGCGGGTCTACCGCCATGGATCGACCGAGCGCCA
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CGCGCCGAAACGTGCCATGCCCACGCTGGCAGCA
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CGCGCCGAAACGTGCCATGCCCACGCTGGCAGCA
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GTGACGTGCGTTGGGGCGAGCGTGCACACCTTCCT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GGCCGTGAGCTGGACGATCTTGTACTGAGAGGGGATG
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC

>NZ_CP012914|2|1|2425507-2426609|PILER-CR
GTTTCAATCCACGCCCTCGCACGGAGGGCGAC	GTTGTGAAGTCCAGCACGGACCCGGTGCAGGTGGC
GTTTCAATCCACGCCCTCGCACGGAGGGCGAC	ACGACGCCTGGAAGCAGGCCGCTGTGTGGAAGGT
GTTTCAATCCACGCCCTCGCACGGAGGGCGAC	GCCTTGGCGGCGTCGAAGTCCATCCACACGACGGT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CCTCAACGGCGTGGCGTCGAGCATCGCGACCGCACT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CGCTGCCGAGCAACACGCCGCCCCGGCCAGCCCG
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GTCCGGTGCCCAGGCTGTCCCCGGCCTGGAGCGT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GAAACTCCGCGGCCACTCCCGCCCCCACAGGATCGT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CGCGCCATCCTCGCCTGAGGGGCCAGATGAGGAGG
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	AGGCCGCCCCAGGACTTCATGAGGCCGGACTTGT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GACCGCCGTGAAGCTAGAGTTTCGATAGTGGTTAGC
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GCGCCCATGACGAAGCTCGCTGACATTTGCCGCAA
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	ATGCGGGTCTACCGCCATGGATCGACCGAGCGCCA
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CGCGCCGAAACGTGCCATGCCCACGCTGGCAGCA
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CGCGCCGAAACGTGCCATGCCCACGCTGGCAGCA
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GTGACGTGCGTTGGGGCGAGCGTGCACACCTTCCT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GGCCGTGAGCTGGACGATCTTGTACTGAGAGGGGATG
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC

>NZ_CP012914|2|2|2425507-2426609|CRISPRCasFinder
GTTTCAATCCACGCCCTCGCACGGAGGGCGAC	GTTGTGAAGTCCAGCACGGACCCGGTGCAGGTGGC
GTTTCAATCCACGCCCTCGCACGGAGGGCGAC	ACGACGCCTGGAAGCAGGCCGCTGTGTGGAAGGT
GTTTCAATCCACGCCCTCGCACGGAGGGCGAC	GCCTTGGCGGCGTCGAAGTCCATCCACACGACGGT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CCTCAACGGCGTGGCGTCGAGCATCGCGACCGCACT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CGCTGCCGAGCAACACGCCGCCCCGGCCAGCCCG
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GTCCGGTGCCCAGGCTGTCCCCGGCCTGGAGCGT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GAAACTCCGCGGCCACTCCCGCCCCCACAGGATCGT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CGCGCCATCCTCGCCTGAGGGGCCAGATGAGGAGG
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	AGGCCGCCCCAGGACTTCATGAGGCCGGACTTGT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GACCGCCGTGAAGCTAGAGTTTCGATAGTGGTTAGC
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GCGCCCATGACGAAGCTCGCTGACATTTGCCGCAA
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	ATGCGGGTCTACCGCCATGGATCGACCGAGCGCCA
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CGCGCCGAAACGTGCCATGCCCACGCTGGCAGCA
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	CGCGCCGAAACGTGCCATGCCCACGCTGGCAGCA
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GTGACGTGCGTTGGGGCGAGCGTGCACACCTTCCT
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC	GGCCGTGAGCTGGACGATCTTGTACTGAGAGGGGATG
GTTTCAATCCACGCCCTCGCACAGAGGGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012914.1\|WP_035671734.1\|2429814_2431614_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP012914.1\|WP_035671731.1\|2431610_2432318_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP012914.1\|WP_059398900.1\|2428142_2428826_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP012914.1\|WP_035671737.1\|2428839_2429808_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP012914.1\|WP_035671746.1\|2422059_2422467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012914.1\|WP_059398898.1\|2417790_2419482_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|223442
NZ_CP012914.1\|WP_035671740.1\|2427076_2428120_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP012914.1\|WP_035671764.1\|2423716_2424130_-\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|223470
NZ_CP012914.1\|WP_051140109.1\|2436828_2437791_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP012914.1\|WP_035671771.1\|2420541_2421324_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP012914.1\|WP_051140111.1\|2422546_2423650_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP012914.1\|WP_035671773.1\|2420040_2420286_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180033
NZ_CP012914.1\|WP_035671748.1\|2419478_2420060_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226995
NZ_CP012914.1\|WP_079285540.1\|2437830_2438580_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270248
NZ_CP012914.1\|WP_014239598.1\|2420294_2420555_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|181682
NZ_CP012914.1\|WP_035671722.1\|2438745_2439432_-\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|235119
NZ_CP012914.1\|WP_051140115.1\|2424313_2424982_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP012914.1\|WP_059398899.1\|2421313_2422045_-\|beta-ketoacyl-synthase-chain-length-factor	unknown	unknown	gnl\|CDD\|379349
NZ_CP012914.1\|WP_035671728.1\|2432988_2435304_-\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP012914.1\|WP_035671741.1\|2426779_2427070_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NZ_CP012914.1\|WP_035671734.1\|2429814_2431614_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP012914.1\|WP_035671731.1\|2431610_2432318_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.50735e-109
NZ_CP012914.1\|WP_059398900.1\|2428142_2428826_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	4.7557e-45
NZ_CP012914.1\|WP_035671737.1\|2428839_2429808_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.36697e-143
NZ_CP012914.1\|WP_035671740.1\|2427076_2428120_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP012914.1\|WP_059398898.1\|2417790_2419482_-\|AMP-binding-protein	gnl\|CDD\|223442	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism].	8.02261e-36
NZ_CP012914.1\|WP_014239598.1\|2420294_2420555_-\|acyl-carrier-protein	gnl\|CDD\|181682	PRK09184, PRK09184, acyl carrier protein; Provisional.	1.46979e-27
NZ_CP012914.1\|WP_035671764.1\|2423716_2424130_-\|excinuclease-ABC-subunit-A	gnl\|CDD\|223470	COG0393, COG0393, Uncharacterized conserved protein [Function unknown].	0.00354899
NZ_CP012914.1\|WP_051140109.1\|2436828_2437791_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.47996e-48
NZ_CP012914.1\|WP_051140111.1\|2422546_2423650_-\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	3.76192e-58
NZ_CP012914.1\|WP_035671773.1\|2420040_2420286_-\|acyl-carrier-protein	gnl\|CDD\|180033	PRK05350, PRK05350, acyl carrier protein; Provisional.	1.28155e-34
NZ_CP012914.1\|WP_035671748.1\|2419478_2420060_-\|hypothetical-protein	gnl\|CDD\|226995	COG4648, COG4648, Predicted membrane protein [Function unknown].	2.79562e-22
NZ_CP012914.1\|WP_079285540.1\|2437830_2438580_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270248	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold. This domain is found in solute binding proteins that serve as initial receptors in the ABC transport, signal transduction and channel gating. The PBP2 proteins share the same architecture as periplasmic binding proteins type 1, but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction.	5.88199e-31
NZ_CP012914.1\|WP_051140115.1\|2424313_2424982_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.74286e-15
NZ_CP012914.1\|WP_035671722.1\|2438745_2439432_-\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|235119	PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional.	1.27454e-120
NZ_CP012914.1\|WP_035671771.1\|2420541_2421324_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.08609e-37
NZ_CP012914.1\|WP_059398899.1\|2421313_2422045_-\|beta-ketoacyl-synthase-chain-length-factor	gnl\|CDD\|379349	pfam13723, Ketoacyl-synt_2, Beta-ketoacyl synthase, N-terminal domain.	2.90193e-68
NZ_CP012914.1\|WP_035671728.1\|2432988_2435304_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.32933e-58
NZ_CP012914.1\|WP_035671741.1\|2426779_2427070_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.96216e-33

>NZ_CP012914.1|WP_051140115.1|2424313_2424982_-|TetR/AcrR-family-transcriptional-regulator
MTESFPAGVRAGRPSKEGTVETSNRIIDITAQLFAAQGFAATSIKQVASACGTGEDAIYRHFPSKAALFEAVVERMRVRTLDGLETEIDSAGGEGDALSRLKRVARWFLTVNLEPDMVALNRIALSEAILHGEDRRDEGESDPITDRLVALVAAAQWDGKLGGDDPRVIAAHLLHSIVLGPSNDAMLGRATYASTEAQGRFFDQAWALFLRGAGRSLPAGAR
>NZ_CP012914.1|WP_035671764.1|2423716_2424130_-|excinuclease-ABC-subunit-A
MIVTANFPALARDERLMFPVEAALSTAAAQGKLDRGVRLYFGDQKHPKTVANLGEWATNKKTNAFNKSDREACEWVFLSAVLELQERARKQGGDAVINIKSNYKNTETVSSTEYMCGAGSIMAGVALKGTVVKLGAK
>NZ_CP012914.1|WP_051140111.1|2422546_2423650_-|alpha/beta-hydrolase
MRRRLLLAAAFAAAALTGACTADPPPPPPAVTATPVLTGGAMIANDGAPIPLHTWPAESALRAVIVAVHGMNDYGLAFDRPARLWARAGIATYAIDQRGFGKAMERGHWYGGERMADDVVALSRLARERHPGVPVYLLGESMGGAVVVLAAARAERGLLSGIVLSAPAVWGTGFRATVTLDAAMILGSLVPDMTVPPLRVATPSTDDPMVLRRMREDPLIIHRTRFQTLAGIVDLMHDARFEARKVDVPVLLMLGDLDVHVPRDGVAALAKSLPPDTRIALYPKGRHLLMRTLDGDRVTQDVAAWVSDTRRALPSGADARAQACPALMTRPHRGCPPPRAAAPRPPKPAIDGKTGNRLPTPATAPQN
>NZ_CP012914.1|WP_035671746.1|2422059_2422467_-|hypothetical-protein
MTLKTGIRALFLILATLAVLGGCNRRQPIYRVTDQPIPAASRDLPAAALQRTIMEAAIDRGWSAEWKAPGEILATKAWKDHEAVVEIRYSHESYTIDHVSTTNLLEHGETVHHAYNKLVRALEDEIERRLRQAKH
>NZ_CP012914.1|WP_059398899.1|2421313_2422045_-|beta-ketoacyl-synthase-chain-length-factor
MTETLRVAIRGWCAWAPDRSTRAAWRDWAGAPAMPDDAPPPALPMMLRRRTSPIGQKLIAAALACGDAAHTARYVLASGHGELARTVGIIDSLRQGELPSPAEFSLSVHHGLAGLLSIHTGNRRGHTALAAGPDSFGFGLLEAAASVVETPSEPVLLLYADAPMPDEYAPFHTAADEALPLAVALALGPADGEGEGLALRCAPATGEPPAESTALDFLRFLLSGAPQAASHGARIDWVWRRAD
>NZ_CP012914.1|WP_035671771.1|2420541_2421324_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MLTRFLDRLWRRAATGFAFAFLFGGGAILAPTVFPLVALTSPAGAVRRQRCQHLVHLIFRFYIRMLRVLRVIDLKVEGAERLRDGRGKLVVANHPSLLDVVLLMALMPRAQCIVKKELWESRWLGGMVRGAGYIRNDLDPEALLDACRAALEAGDGLIIFPEGTRTVPGEPVRFRRGFANLATLLEAEVQPVTITCDPPTLIKGEKWWMIPPRRPIFRVMVGDRLDVTGLLGYQYRSLAARKLVRSLEDYFAERLADGKA
>NZ_CP012914.1|WP_014239598.1|2420294_2420555_-|acyl-carrier-protein
MEKLERELKTLIVDALKLEDIAPEEIDSEEPLFNDGLGLDSIDALELGVALRKAYGIKIESVTDDVKQHFANVRSLARFIQSQRAE
>NZ_CP012914.1|WP_035671773.1|2420040_2420286_-|acyl-carrier-protein
MTPDEIYARLQSYLEDMFEVPPEKISREARLFEDLDLDSIDAVDLVVKLQELTGRKFKPEEFKSVRTVGDVLDRVHALLQE
>NZ_CP012914.1|WP_035671748.1|2419478_2420060_-|hypothetical-protein
MPSSRNRLPPFGVAALVVAGALYPVLVYGGRALVPPLAFVAVALALIGARFAICSSPAARVWRLPLAAAAVLVGVLAALDGALAAKAYPVALSLGTAAVFGASLLRPPSLVERFARLQEPDLPPAGQAYCRTVTVVWTVWLVANAAVAGALALWGSDEAWALWTGLIAYIVMGLLFGGEVLIRRSMRRRHAGA
>NZ_CP012914.1|WP_059398898.1|2417790_2419482_-|AMP-binding-protein
MTAIPLSRLLAVGRPDDAPVADDVTFARFRADVAGNAARLKGCRRGLLVAPDGYWGAVGLLALLHAGAEVTIPPNAQPGTLAALTADGAVPVGGDLGGNLGPGGEGMALAPLDPGTPLTFFTSGSTGEPKRVVRTLGMLEADALATESVLGRLAGPSARVHATVPHQHVYGLNFRLLWPLVTGRPFASAMHELWETALAALDAGSVLVTSPAHLTRLAGIAPLPPSRRPALVLSAGAPLPEPAAREAAAIFGTPVTEIFGSTETGAIAHRRREAGDPSWRPLPGVVAGRTPDGRLRVGATHVEGGEHVGSDLVEMTEDGGFRVLGRADRIAKVEGKRVSLPEVEAQLRRSPLVADAAALMLEQLCAVVVPSAEGAARLADLGAFRFGRLLRRELSAVQEPAGLPRRWRFVSRLPDGALGKRRHADIAALFEESALPEIALSEIATHRPTAPDVRAVRPLADGVELDLFIPGDLAQLDGHFPGMPIVPGVAQIDWAVTFANTHLGLGIEVAQSLQVKFRRVTVPDTMVTLALRHAPARRRLTFEYRCGDETLSSGSIGVEGIAP
>NZ_CP012914.1|WP_035671741.1|2426779_2427070_-|CRISPR-associated-endonuclease-Cas2
MLMLITYDVNTQDASGRRRLRRVARACQDFGQRVQFSVFECDVDPAQWAVLRARLIGEINQETDSLRFYHLGANAARRIEHVGAKPVLDLGGALIF
>NZ_CP012914.1|WP_035671740.1|2427076_2428120_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQHLNTLFITTDGAWLRKDGANIVVEVERAEIGRVPIHMMGGIVCFGRVGMSPPLMGHCAESGVAVSFLSEHGKFMARVEGPCSGNVLLRRRQYRIADDPAAGLVIVRAIVAAKAANQRAVLRRALRDHGTGRSQDAGHARLDDAQRRLGDVARRVAEAPDIDAARGHEGDAANAYFGVFDHLVRRTDGTFRFGGRSRRPPLDPCNALLSFLYAILGHDCRSALESVGLDPQVGFLHRDRPGRASLALDLMEEFRSTLADRVALTLINRQQLGEKDFIRMDGGAVLLRDDSRKAVLTAYQERKKDEITHPFLNEKVSLGLVPHIQAQLLARHLRGDLDGYPPFLWK
>NZ_CP012914.1|WP_059398900.1|2428142_2428826_-|CRISPR-associated-protein-Cas4
MDAAPMDTDDLLPLSALQHHLFCPRQCALIHVERQWRENRLTAEGRLLHESVDAGGREVRGGVRTVRSMPLRSHRLGLAGVADVVELHGPERRPFPVEYKRGRPKAHRADEVQLCAQAICLEEMFGTAIAEGALFYGETRRRVAVALDAALRDLTERTAAAVREMVRTGTTPPPVYEARKCQSCSMLDLCRPRRLSHPPAVALWLARQLGEPDRPEGDGETADTRSP
>NZ_CP012914.1|WP_035671737.1|2428839_2429808_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MPANQKSPIQNRYEFVYLFDVTNGNPNGDPDAGNLPRLDPETNKGLVTDVCLKRKIRNYAALSRDGEPRYGIYVQEGAILNEKHRAAYAAVRPDDKDVATAKKLSPKGEEETAVRRFMCDNFFDVRSFGAVMSTSINCGQVRGPVQMSFAHSVEPILPLEISITRMAATSEKELKERKEGEAAEDERRENRTMGRKHVVPYGLYRSHGYISASLAGRTGFDEDDLELLWTALEQMFDHDRSAARGEMAGRRLFLFRHDSVLGNAPAHRLFDLVTVKRRFQGADYDLDGGGLDNLPPARRFADYTVSADTAGVPAGVTLIEKF
>NZ_CP012914.1|WP_035671734.1|2429814_2431614_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MTLFAALNGYYDRLAERGDVPPFGFSMERISYAVVLSSGGEPVEVTDLRILSGKKPKPRPLMVPQFFGRSGTKPPPYFLCDHTRFLFGVGADKATGARAASPAYFAAFKERHLAAIDGSNDEGLVALRNFLTHWTPDAFRAPLFDDAMLDQYMVFMLDGDRNAAGQPRFLHDRPAARRLWEKELAAKKGDEGFCLVTGEWGPVTALHPLIKGVWGAQVGGARIVSFNSNAFTSYAKSDGLNAPVSDAVTFGYGTALNTLLKEGSGNRLQVGDATVAFWADTSGGEKAAQKAETLFSDLLDPPRPEDAEEAQRIKDVLTPVSQGRPVREIDPMLDERTRFFILGLSPNIARLSVRFWLEDSFGAIAEHIGRHWRDLEIKPDPWRTAPSVWALLRETALMGKSDNVAPLLGGEVMRAVLTGGRYPRSLLAAVITRIRAGDEITGAKAAICKACLNRDSRLGSTKEEELPVSLNRDEANAGYRLGRLFAVLENTQRAALGKVNASIRDRYFGAASATPASVFPMLLRNSTHHLAVLRKGDKARLGGWFEGEIGEILGGLGASFPRSLRIEDQGRFAIGYYHQRYAGKTDAAIPAADTTDSED
>NZ_CP012914.1|WP_035671731.1|2431610_2432318_-|type-I-C-CRISPR-associated-protein-Cas5
MAYGVKLHVWGERACFTRPEMKVERMSYDIMTPSAARGILEAIHWKPAIRWVIDAIHVLKPIRFQSIRRNEVSGLVPKSFVTAAMKAGAVHDLRMDAAENRQQRAATVLVDVAYVIEAHFDLTDRAGAEDTPAKHLSMFNRRAAQGQCFHQPCFGTREFPAHFALLDGDLPPSALPDDQRNRDLGWMLLDMRHDRDSRVGNQHCCTAHCTPLFFHAALRDGAVAVPPPESVEVRS
>NZ_CP012914.1|WP_035671728.1|2432988_2435304_-|CRISPR-associated-endonuclease-Cas3''
MAKNVHAHSVFGQSEDAWEPLADHLKAVASKAAELAAPFGGGGVAEAMGALHDAGKANPAFQAYIRGLGPGVDHSTAGAVIAAERYGPVLGRMMAFGIAGHHAGLANGRIPGGGLSSLNDRLAGCRPHRLEPEQDVAPAGADLSAPVLSEGFSHSFSLPFLIRMLFSCLIDADRLETERFYAEFRKEEVDRGCPLTIGDLRGRLDRHLSRFEGESGPVNALRAEVLAAARAGSEQAPGLFSLTVPTGGGKTLASLAFALDHAERHNLRRVIYVIPFTSIVEQTADVFRTALGDRDAVQEHHSGFDFGPGPDKGKRAADDSEEEGRDGIAKLRRAAENWDRPIVVTTAVQFFESLFSNRTSPCRKLHAIAGSVVILDEAQTLPLKYLLPCLEALRELARGYRTSVVLCTATQPAVTVDSGFKGGLERVRELAPDPQGLYRRLKRVTVERIREPLGDEELAERLRAERQVLCIVNNRRHARDLLRQVANGLNEPRSARHLSTCLCAAHRRAELAAIRKDLKSGAPVRLVATSLVEAGVDFSFPTVYRALAGLDSIAQAAGRCNRNGELPEPGRVFVFSSPEGENRKPPPELSQFAEVAASILRTHDDPLGLDTIRAYFQRLYWQRGREELDAALVGEGAEPIKGILEALRLYQRGQDYPFADIAKAFRIIESPLVPVIVPYGPADDPDAVPRLLRNLDHVSAEKTGGIARALQPYLVQIPRSARNALIAAGAAEYVRKGEFGEQFVRLVNDDLYHPDVGLDWDDPTFRNLDLF
>NZ_CP012914.1|WP_051140109.1|2436828_2437791_-|serine-hydrolase
MVAKDGRIVYHRAAGHADREAGTEMREDAIFRLASVTKPFVTAAAMRLAENGRLDLDAPVARWLPDFRPTLPDGSIPDITIRQLLTHTSGLGYAFREPAEGPYHRLNVSDGLDQPGLSLEESLARLSAAPLHFAPGTGWRYSLGIDDTGFPVHAPSRLAKAYADGNPEPVPMTDGMAVPLMGLAATFAPSRIFDASSYPSGGAGMAGTASDVLRFLEAIRTGGGPILKPETVGLMVHDQVGATAQTQGPGWGFGYGWAVLDDPALTGTPQAAGTLQWGGAYGHSWFIDRKNGLSVVALTNTAFEGMAGAFPTDVRNAVYE
>NZ_CP012914.1|WP_079285540.1|2437830_2438580_-|transporter-substrate-binding-domain-containing-protein
MRTTVRVCLAGVARLLVVALILASAPARAENWTVASEDYFPPYNFTERGKRTGMDTEIVDAMLKDIGVYPVHRPMAWPEVVRAHDENAVDVAFQFFTSPRRLERGHLIGPYRVGATVLMVRSNSEITYTGIDDLRGLRIGVVDGFEYTPEFDKSSLFEKVRSSSNVVSFRRLLLGRVDAIAGDLQVLRYLADSEGRTGSVKILPTPLAMVPRYISVPKLRAEKAERLQAAYEKLKRDGTIDAIVRRWER
>NZ_CP012914.1|WP_035671722.1|2438745_2439432_-|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MNQTFASNPLSSTSSAGLLDRFGTAEERVIRAVEAIRQGGGVVVVDDEDRENEGDVIYAAETITAEQMALLIREGSGIVCLILTDADARRLDLPPMVGSNTARFGTAFTVSIEAREGVSTGVSAADRVTTIRTAIADGCRPEDLARPGHVFPIRAHAGGLAARRGHTEATIELTTLAGRRPAGVLCEVMNPDGTMARLPELVAFAERHGMPVVTIEDLVGAMRLRAAA

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Crispr_ID: NZ_CP012914_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012914_3

2436095-2436596

TypeI

I-C

Consensus_repeat	Method
GTTTCAATCCACGCCCTCGCACGGAGGGCGAC	PILER-CR
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	CRT

7 spacers

cas3,cas5,cas8c,cas7b,cas4,cas1,cas2

The CRISPR arrays of NZ_CP012914_3

>merge|NZ_CP012914|3|2436095-2436596|PILER-CR,CRISPRCasFinder,CRT
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAACAGCGAAAACTGGTTCCGCAGTCCAAACTCGGACGGTCGCCCTCCGTGCGAGGGCGTGGATTGAAACGCCAGGACCTCGCCGACAATCGGGTGGCCGAGATCGTCGCCCTCCGTGCGAGGGCGTGGATTGAAACTGCCCCATGAAGATGGGCTCCAGGGCGGGCTTGAGGTCGCCCTCCGTGCGAGGGCGTGGATTGAAACAGCACGAAGGCCGCCGGCTCGGCGATGCCGACATGCGGTCGCCCTCCGTGCGAGGGCGTGGATTGAAACCCGCTGGCGTCCAGTGCCTCAAGCCAGTAGTAGCGGTCGCCCTCCGTGCGAGGGCGTGGATTGAAACTCGACGACCTCGATGGCCGGTTTGAAGCCGTCCTCGTCGCCCTCCGTGCGAGGGCGTGGATTGAAACCGTCCGCGTCCGCTTGGTCAGAGCGGGCGCGGCGGGTCGCCCTCCGTGCGAGGGCCTGGATTGAAAC

>NZ_CP012914|3|2|2436095-2436596|PILER-CR
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	AGCGAAAACTGGTTCCGCAGTCCAAACTCGGACG
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	GCCAGGACCTCGCCGACAATCGGGTGGCCGAGATC
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	TGCCCCATGAAGATGGGCTCCAGGGCGGGCTTGAG
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	AGCACGAAGGCCGCCGGCTCGGCGATGCCGACATGCG
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	CCGCTGGCGTCCAGTGCCTCAAGCCAGTAGTAGCG
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	TCGACGACCTCGATGGCCGGTTTGAAGCCGTCCTC
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	CGTCCGCGTCCGCTTGGTCAGAGCGGGCGCGGCGG
GTCGCCCTCCGTGCGAGGGCCTGGATTGAAAC

>NZ_CP012914|3|3|2436095-2436596|CRISPRCasFinder
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	AGCGAAAACTGGTTCCGCAGTCCAAACTCGGACG
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	GCCAGGACCTCGCCGACAATCGGGTGGCCGAGATC
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	TGCCCCATGAAGATGGGCTCCAGGGCGGGCTTGAG
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	AGCACGAAGGCCGCCGGCTCGGCGATGCCGACATGCG
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	CCGCTGGCGTCCAGTGCCTCAAGCCAGTAGTAGCG
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	TCGACGACCTCGATGGCCGGTTTGAAGCCGTCCTC
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	CGTCCGCGTCCGCTTGGTCAGAGCGGGCGCGGCGG
GTCGCCCTCCGTGCGAGGGCCTGGATTGAAAC

>NZ_CP012914|3|2|2436095-2436596|CRT
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	AGCGAAAACTGGTTCCGCAGTCCAAACTCGGACG
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	GCCAGGACCTCGCCGACAATCGGGTGGCCGAGATC
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	TGCCCCATGAAGATGGGCTCCAGGGCGGGCTTGAG
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	AGCACGAAGGCCGCCGGCTCGGCGATGCCGACATGCG
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	CCGCTGGCGTCCAGTGCCTCAAGCCAGTAGTAGCG
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	TCGACGACCTCGATGGCCGGTTTGAAGCCGTCCTC
GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC	CGTCCGCGTCCGCTTGGTCAGAGCGGGCGCGGCGG
GTCGCCCTCCGTGCGAGGGCCTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012914.1\|WP_051140111.1\|2422546_2423650_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP012914.1\|WP_035671731.1\|2431610_2432318_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP012914.1\|WP_059398900.1\|2428142_2428826_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP012914.1\|WP_035671737.1\|2428839_2429808_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP012914.1\|WP_035671751.1\|2445537_2445816_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224583
NZ_CP012914.1\|WP_035671740.1\|2427076_2428120_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP012914.1\|WP_035671728.1\|2432988_2435304_-\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP012914.1\|WP_035671715.1\|2444997_2445453_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP012914.1\|WP_059398904.1\|2443408_2444635_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP012914.1\|WP_035671764.1\|2423716_2424130_-\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|223470
NZ_CP012914.1\|WP_051140109.1\|2436828_2437791_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP012914.1\|WP_035671734.1\|2429814_2431614_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP012914.1\|WP_059398903.1\|2442849_2443428_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_CP012914.1\|WP_035671720.1\|2439799_2441488_-\|alpha-glucosidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|200473
NZ_CP012914.1\|WP_079285540.1\|2437830_2438580_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270248
NZ_CP012914.1\|WP_059398902.1\|2441683_2442859_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NZ_CP012914.1\|WP_035671722.1\|2438745_2439432_-\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|235119
NZ_CP012914.1\|WP_051140115.1\|2424313_2424982_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP012914.1\|WP_014239544.1\|2444695_2444905_-\|dodecin-family-protein	unknown	unknown	gnl\|CDD\|225896
NZ_CP012914.1\|WP_035671741.1\|2426779_2427070_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NZ_CP012914.1\|WP_051140111.1\|2422546_2423650_-\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	3.76192e-58
NZ_CP012914.1\|WP_035671731.1\|2431610_2432318_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.50735e-109
NZ_CP012914.1\|WP_059398900.1\|2428142_2428826_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	4.7557e-45
NZ_CP012914.1\|WP_035671737.1\|2428839_2429808_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.36697e-143
NZ_CP012914.1\|WP_035671751.1\|2445537_2445816_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	3.12171e-23
NZ_CP012914.1\|WP_035671740.1\|2427076_2428120_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP012914.1\|WP_035671728.1\|2432988_2435304_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.32933e-58
NZ_CP012914.1\|WP_035671715.1\|2444997_2445453_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.20582e-57
NZ_CP012914.1\|WP_059398904.1\|2443408_2444635_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	3.9092e-78
NZ_CP012914.1\|WP_035671764.1\|2423716_2424130_-\|excinuclease-ABC-subunit-A	gnl\|CDD\|223470	COG0393, COG0393, Uncharacterized conserved protein [Function unknown].	0.00354899
NZ_CP012914.1\|WP_051140109.1\|2436828_2437791_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.47996e-48
NZ_CP012914.1\|WP_035671734.1\|2429814_2431614_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP012914.1\|WP_059398903.1\|2442849_2443428_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.75782e-66
NZ_CP012914.1\|WP_035671720.1\|2439799_2441488_-\|alpha-glucosidase-C-terminal-domain-containing-protein	gnl\|CDD\|200473	cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase. Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP012914.1\|WP_079285540.1\|2437830_2438580_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270248	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold. This domain is found in solute binding proteins that serve as initial receptors in the ABC transport, signal transduction and channel gating. The PBP2 proteins share the same architecture as periplasmic binding proteins type 1, but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction.	5.88199e-31
NZ_CP012914.1\|WP_059398902.1\|2441683_2442859_+\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.063e-17
NZ_CP012914.1\|WP_035671722.1\|2438745_2439432_-\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|235119	PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional.	1.27454e-120
NZ_CP012914.1\|WP_051140115.1\|2424313_2424982_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.74286e-15
NZ_CP012914.1\|WP_014239544.1\|2444695_2444905_-\|dodecin-family-protein	gnl\|CDD\|225896	COG3360, COG3360, Uncharacterized conserved protein [Function unknown].	3.68579e-30
NZ_CP012914.1\|WP_035671741.1\|2426779_2427070_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.96216e-33

>NZ_CP012914.1|WP_035671728.1|2432988_2435304_-|CRISPR-associated-endonuclease-Cas3''
MAKNVHAHSVFGQSEDAWEPLADHLKAVASKAAELAAPFGGGGVAEAMGALHDAGKANPAFQAYIRGLGPGVDHSTAGAVIAAERYGPVLGRMMAFGIAGHHAGLANGRIPGGGLSSLNDRLAGCRPHRLEPEQDVAPAGADLSAPVLSEGFSHSFSLPFLIRMLFSCLIDADRLETERFYAEFRKEEVDRGCPLTIGDLRGRLDRHLSRFEGESGPVNALRAEVLAAARAGSEQAPGLFSLTVPTGGGKTLASLAFALDHAERHNLRRVIYVIPFTSIVEQTADVFRTALGDRDAVQEHHSGFDFGPGPDKGKRAADDSEEEGRDGIAKLRRAAENWDRPIVVTTAVQFFESLFSNRTSPCRKLHAIAGSVVILDEAQTLPLKYLLPCLEALRELARGYRTSVVLCTATQPAVTVDSGFKGGLERVRELAPDPQGLYRRLKRVTVERIREPLGDEELAERLRAERQVLCIVNNRRHARDLLRQVANGLNEPRSARHLSTCLCAAHRRAELAAIRKDLKSGAPVRLVATSLVEAGVDFSFPTVYRALAGLDSIAQAAGRCNRNGELPEPGRVFVFSSPEGENRKPPPELSQFAEVAASILRTHDDPLGLDTIRAYFQRLYWQRGREELDAALVGEGAEPIKGILEALRLYQRGQDYPFADIAKAFRIIESPLVPVIVPYGPADDPDAVPRLLRNLDHVSAEKTGGIARALQPYLVQIPRSARNALIAAGAAEYVRKGEFGEQFVRLVNDDLYHPDVGLDWDDPTFRNLDLF
>NZ_CP012914.1|WP_035671731.1|2431610_2432318_-|type-I-C-CRISPR-associated-protein-Cas5
MAYGVKLHVWGERACFTRPEMKVERMSYDIMTPSAARGILEAIHWKPAIRWVIDAIHVLKPIRFQSIRRNEVSGLVPKSFVTAAMKAGAVHDLRMDAAENRQQRAATVLVDVAYVIEAHFDLTDRAGAEDTPAKHLSMFNRRAAQGQCFHQPCFGTREFPAHFALLDGDLPPSALPDDQRNRDLGWMLLDMRHDRDSRVGNQHCCTAHCTPLFFHAALRDGAVAVPPPESVEVRS
>NZ_CP012914.1|WP_035671734.1|2429814_2431614_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MTLFAALNGYYDRLAERGDVPPFGFSMERISYAVVLSSGGEPVEVTDLRILSGKKPKPRPLMVPQFFGRSGTKPPPYFLCDHTRFLFGVGADKATGARAASPAYFAAFKERHLAAIDGSNDEGLVALRNFLTHWTPDAFRAPLFDDAMLDQYMVFMLDGDRNAAGQPRFLHDRPAARRLWEKELAAKKGDEGFCLVTGEWGPVTALHPLIKGVWGAQVGGARIVSFNSNAFTSYAKSDGLNAPVSDAVTFGYGTALNTLLKEGSGNRLQVGDATVAFWADTSGGEKAAQKAETLFSDLLDPPRPEDAEEAQRIKDVLTPVSQGRPVREIDPMLDERTRFFILGLSPNIARLSVRFWLEDSFGAIAEHIGRHWRDLEIKPDPWRTAPSVWALLRETALMGKSDNVAPLLGGEVMRAVLTGGRYPRSLLAAVITRIRAGDEITGAKAAICKACLNRDSRLGSTKEEELPVSLNRDEANAGYRLGRLFAVLENTQRAALGKVNASIRDRYFGAASATPASVFPMLLRNSTHHLAVLRKGDKARLGGWFEGEIGEILGGLGASFPRSLRIEDQGRFAIGYYHQRYAGKTDAAIPAADTTDSED
>NZ_CP012914.1|WP_035671737.1|2428839_2429808_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MPANQKSPIQNRYEFVYLFDVTNGNPNGDPDAGNLPRLDPETNKGLVTDVCLKRKIRNYAALSRDGEPRYGIYVQEGAILNEKHRAAYAAVRPDDKDVATAKKLSPKGEEETAVRRFMCDNFFDVRSFGAVMSTSINCGQVRGPVQMSFAHSVEPILPLEISITRMAATSEKELKERKEGEAAEDERRENRTMGRKHVVPYGLYRSHGYISASLAGRTGFDEDDLELLWTALEQMFDHDRSAARGEMAGRRLFLFRHDSVLGNAPAHRLFDLVTVKRRFQGADYDLDGGGLDNLPPARRFADYTVSADTAGVPAGVTLIEKF
>NZ_CP012914.1|WP_059398900.1|2428142_2428826_-|CRISPR-associated-protein-Cas4
MDAAPMDTDDLLPLSALQHHLFCPRQCALIHVERQWRENRLTAEGRLLHESVDAGGREVRGGVRTVRSMPLRSHRLGLAGVADVVELHGPERRPFPVEYKRGRPKAHRADEVQLCAQAICLEEMFGTAIAEGALFYGETRRRVAVALDAALRDLTERTAAAVREMVRTGTTPPPVYEARKCQSCSMLDLCRPRRLSHPPAVALWLARQLGEPDRPEGDGETADTRSP
>NZ_CP012914.1|WP_035671740.1|2427076_2428120_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQHLNTLFITTDGAWLRKDGANIVVEVERAEIGRVPIHMMGGIVCFGRVGMSPPLMGHCAESGVAVSFLSEHGKFMARVEGPCSGNVLLRRRQYRIADDPAAGLVIVRAIVAAKAANQRAVLRRALRDHGTGRSQDAGHARLDDAQRRLGDVARRVAEAPDIDAARGHEGDAANAYFGVFDHLVRRTDGTFRFGGRSRRPPLDPCNALLSFLYAILGHDCRSALESVGLDPQVGFLHRDRPGRASLALDLMEEFRSTLADRVALTLINRQQLGEKDFIRMDGGAVLLRDDSRKAVLTAYQERKKDEITHPFLNEKVSLGLVPHIQAQLLARHLRGDLDGYPPFLWK
>NZ_CP012914.1|WP_035671741.1|2426779_2427070_-|CRISPR-associated-endonuclease-Cas2
MLMLITYDVNTQDASGRRRLRRVARACQDFGQRVQFSVFECDVDPAQWAVLRARLIGEINQETDSLRFYHLGANAARRIEHVGAKPVLDLGGALIF
>NZ_CP012914.1|WP_051140115.1|2424313_2424982_-|TetR/AcrR-family-transcriptional-regulator
MTESFPAGVRAGRPSKEGTVETSNRIIDITAQLFAAQGFAATSIKQVASACGTGEDAIYRHFPSKAALFEAVVERMRVRTLDGLETEIDSAGGEGDALSRLKRVARWFLTVNLEPDMVALNRIALSEAILHGEDRRDEGESDPITDRLVALVAAAQWDGKLGGDDPRVIAAHLLHSIVLGPSNDAMLGRATYASTEAQGRFFDQAWALFLRGAGRSLPAGAR
>NZ_CP012914.1|WP_035671764.1|2423716_2424130_-|excinuclease-ABC-subunit-A
MIVTANFPALARDERLMFPVEAALSTAAAQGKLDRGVRLYFGDQKHPKTVANLGEWATNKKTNAFNKSDREACEWVFLSAVLELQERARKQGGDAVINIKSNYKNTETVSSTEYMCGAGSIMAGVALKGTVVKLGAK
>NZ_CP012914.1|WP_051140111.1|2422546_2423650_-|alpha/beta-hydrolase
MRRRLLLAAAFAAAALTGACTADPPPPPPAVTATPVLTGGAMIANDGAPIPLHTWPAESALRAVIVAVHGMNDYGLAFDRPARLWARAGIATYAIDQRGFGKAMERGHWYGGERMADDVVALSRLARERHPGVPVYLLGESMGGAVVVLAAARAERGLLSGIVLSAPAVWGTGFRATVTLDAAMILGSLVPDMTVPPLRVATPSTDDPMVLRRMREDPLIIHRTRFQTLAGIVDLMHDARFEARKVDVPVLLMLGDLDVHVPRDGVAALAKSLPPDTRIALYPKGRHLLMRTLDGDRVTQDVAAWVSDTRRALPSGADARAQACPALMTRPHRGCPPPRAAAPRPPKPAIDGKTGNRLPTPATAPQN
>NZ_CP012914.1|WP_051140109.1|2436828_2437791_-|serine-hydrolase
MVAKDGRIVYHRAAGHADREAGTEMREDAIFRLASVTKPFVTAAAMRLAENGRLDLDAPVARWLPDFRPTLPDGSIPDITIRQLLTHTSGLGYAFREPAEGPYHRLNVSDGLDQPGLSLEESLARLSAAPLHFAPGTGWRYSLGIDDTGFPVHAPSRLAKAYADGNPEPVPMTDGMAVPLMGLAATFAPSRIFDASSYPSGGAGMAGTASDVLRFLEAIRTGGGPILKPETVGLMVHDQVGATAQTQGPGWGFGYGWAVLDDPALTGTPQAAGTLQWGGAYGHSWFIDRKNGLSVVALTNTAFEGMAGAFPTDVRNAVYE
>NZ_CP012914.1|WP_079285540.1|2437830_2438580_-|transporter-substrate-binding-domain-containing-protein
MRTTVRVCLAGVARLLVVALILASAPARAENWTVASEDYFPPYNFTERGKRTGMDTEIVDAMLKDIGVYPVHRPMAWPEVVRAHDENAVDVAFQFFTSPRRLERGHLIGPYRVGATVLMVRSNSEITYTGIDDLRGLRIGVVDGFEYTPEFDKSSLFEKVRSSSNVVSFRRLLLGRVDAIAGDLQVLRYLADSEGRTGSVKILPTPLAMVPRYISVPKLRAEKAERLQAAYEKLKRDGTIDAIVRRWER
>NZ_CP012914.1|WP_035671722.1|2438745_2439432_-|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MNQTFASNPLSSTSSAGLLDRFGTAEERVIRAVEAIRQGGGVVVVDDEDRENEGDVIYAAETITAEQMALLIREGSGIVCLILTDADARRLDLPPMVGSNTARFGTAFTVSIEAREGVSTGVSAADRVTTIRTAIADGCRPEDLARPGHVFPIRAHAGGLAARRGHTEATIELTTLAGRRPAGVLCEVMNPDGTMARLPELVAFAERHGMPVVTIEDLVGAMRLRAAA
>NZ_CP012914.1|WP_035671720.1|2439799_2441488_-|alpha-glucosidase-C-terminal-domain-containing-protein
MIKDLWYKNAVIYNLSLGTFMDANGDGIGDFQGLQRRLDYLQGLGVTCVWLGPFQPSPMRDHGYDVADYYNVDPRYGTLGDFVEFSHACKQRGIRLIIDLVVNHTSDQHPWFQAARKDPGSPYRDWYVWSDKKPSDADQGVVFPGVQKTTWSWDKEARAYYFHRFYEFQPDLNTANPEVQAELLKVMGFWIELGVSGFRMDAVPFVIATKGPDVKKPKQQFDMLRTFREFVQWRCGDAVLLAEANVLPTVDQEYFGDDGDRMQMVFNFQVNQTLFYALATADTRPLAKALDVTRVPRPSTNQWGLFLRNHDELDLGRLTEAQRKRVFDAFGPDKDMQLYDRGIRRRLAPMLRGDRRWLELAYSLLFTLPGTPVLRYGDEIGMGDDLSLPERECARTPMQWSNEPQGGFTKADDPVHPVISGGAYGYERINAAHQRREPSSLLNWTERIIRMRKECPEIGWGDFQVLPTGSNAVLAIRYDWRNNSVLVVHNLDDRPHEVVLAVDGAGKSPRLVNLLAEDHNDPEEDGRHRLVLEPYGYRWYRLGGLDYLLRRTEGPVGGAKRS
>NZ_CP012914.1|WP_059398902.1|2441683_2442859_+|calcium-binding-protein
MKRAMRQNAPQNSGTQTTTTQAVSYAYGNNAGALAAAPAAPVPTSFAPVTINYAETRADGGFGWDVKYDLGFDGTAFTVQTRIHLTGDDAGSLKQVWEQGIEGIWGDKYSLSDGTNSYAIRFDVQFVAAGTQHYNVNVSNSYGRCDMLNWCTQTDWGPDYQDELAAHEFGHMIGAFDEYAGGATYGNFAATGTIMSDLTPTLRPNYMNSIDYYAEQFTGKTFQIVEMPKNLTLTGNTWADSLYGGAGNDTLSGLSGNDQLFGGAGNDLLWGDAGNDTLRGQAGNDALHGGSGADLLMGDEGNDTLWGDAGNDTLWGGSGADLFVFTRGGGQDRIADFSRAQNDRIQIASNMTYRLGSDGSGSALLDFGGGDRLTLAGIAPNQVTSAFFTYG
>NZ_CP012914.1|WP_059398903.1|2442849_2443428_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIVGGKHRGRRLAAPGGSDTRPTTDRTRESLFNILSHADWGPDGADLLEGAVVVDAFCGTGALGLEALSRGAAHASFLDLGRAALDAVRANVAALGEGANAAILRADATRPPPPPGRPCTLAFLDPPYGQDLAPRALAGLTKAGWLAPGAVLVVEVAGRDPLPLPPGFAELDERRYGDTRVQFLRYGMPQP
>NZ_CP012914.1|WP_059398904.1|2443408_2444635_-|rRNA-pseudouridine-synthase
MDTPDFEHSKAMPGAADADAGEPDAGERIAKRLARAGLCSRRDAERWITDGRVAVNGTTLDSPACVVRSGDVVQVDGKVIPEPEPARLWRYYKPSGLVTTARDEKGRTTVFERLPPDMPRVISVGRLDLTTEGLLLLTNDGELARFLELPATGWTRRYRVRVFGEVNEVKLAELAKGPTIEGVKYGPIEAVLDRIQGRNAWLTVSLKEGKNREIRKVMEALDLQVNRLIRVAYGPFQLGKLEESAVEEVPKRVVREQVSRFFTGADPAEEGKAKGKTSAAKTATKSESAGAEGAKGRSAAPAKAAKPRDAKAGWAKAEPKAASDRRGPAKPASGGYASGKPASNKPASARMDGKPAGKPGTLTLKGGKPGGGGKPGPKPRGAGGAGGASGGGASGGRGPERTRADRRR
>NZ_CP012914.1|WP_014239544.1|2444695_2444905_-|dodecin-family-protein
MSNHVYKKVEIVGTAETTIDDAIRNGIERASKTLKNVDWFEVGEIRGHVSGGKVAHFQVVMKVGFRLEE
>NZ_CP012914.1|WP_035671715.1|2444997_2445453_+|nucleoside-deaminase
MSRPPSPMDIAFDEAEAAASRGEVPVGAVLVDPATGAVLARAGNRTEELNDPTAHAEVLAIRAACAALGEPRLPGLDLYVTLEPCALCAAAISFARLRRVYFGAYDPKGGGVVHGPRFYHQPTCHHAPDVYGGIDETRAGEMLREFFRGRR
>NZ_CP012914.1|WP_035671751.1|2445537_2445816_-|nucleotidyltransferase-family-protein
MPAGVSAEDIKALASRFGAGNLRVFGSRATGRARPGSDLDLLVELEPGRDLFDLIELKHALEERTGAAVDVVTERGLSPYMRDGILQSARSL

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Crispr_ID: NZ_CP012914_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012914_4

2799474-2799539

Orphan

Consensus_repeat	Method
CCACCTCGATCGTTGAAGCCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012914_4

>merge|NZ_CP012914|4|2799474-2799539|CRISPRCasFinder
CCACCCCGATCGTTGAAGCCGCGGTTGCCGAACCCGCGGTCGCCCCCACGGTCGTTGCGGTCGCCG

>NZ_CP012914|4|4|2799474-2799539|CRISPRCasFinder
CCACCCCGATCGTTGAAGCCGCGG	TTGCCGAACCCGCGGTCG
CCCCCACGGTCGTTGCGGTCGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012914.1\|WP_104675346.1\|2804923_2805907_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP012914.1\|WP_059398967.1\|2790611_2792636_-\|type-VI-secretion-system-membrane-subunit-TssM	unknown	unknown	gnl\|CDD\|274531
NZ_CP012914.1\|WP_059398968.1\|2792613_2793957_-\|DotU-family-type-IV/VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|180801
NZ_CP012914.1\|WP_035670897.1\|2801722_2802454_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|225040
NZ_CP012914.1\|WP_035670887.1\|2804150_2804927_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224049
NZ_CP012914.1\|WP_035670956.1\|2797329_2798961_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl\|CDD\|100087
NZ_CP012914.1\|WP_137165137.1\|2800238_2800787_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234609
NZ_CP012914.1\|WP_059399066.1\|2789301_2789952_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP012914.1\|WP_035670890.1\|2803618_2804146_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP012914.1\|WP_035670951.1\|2800023_2800239_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237864
NZ_CP012914.1\|WP_014239131.1\|2789967_2790612_-\|type-VI-secretion-system-associated-protein-TagF	unknown	unknown	gnl\|CDD\|370730
NZ_CP012914.1\|WP_035670899.1\|2800953_2801730_+\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|379721
NZ_CP012914.1\|WP_167555909.1\|2796627_2797272_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NZ_CP012914.1\|WP_059398970.1\|2794771_2795791_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP012914.1\|WP_035670893.1\|2802583_2803495_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP012914.1\|WP_104675347.1\|2805918_2806827_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP012914.1\|WP_035670880.1\|2806826_2807846_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP012914.1\|WP_014239127.1\|2794461_2794632_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012914.1\|WP_158283108.1\|2794058_2794460_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP012914.1\|WP_051140061.1\|2795959_2796454_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692

Protein	Function_ID	Function_description	E-value
NZ_CP012914.1\|WP_104675346.1\|2804923_2805907_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.01123e-140
NZ_CP012914.1\|WP_059398967.1\|2790611_2792636_-\|type-VI-secretion-system-membrane-subunit-TssM	gnl\|CDD\|274531	TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. [Cellular processes, Pathogenesis].	4.53878e-173
NZ_CP012914.1\|WP_059398968.1\|2792613_2793957_-\|DotU-family-type-IV/VI-secretion-system-protein	gnl\|CDD\|180801	PRK07033, PRK07033, DotU family type VI secretion system protein.	1.83737e-101
NZ_CP012914.1\|WP_035670897.1\|2801722_2802454_+\|metallophosphoesterase	gnl\|CDD\|225040	COG2129, COG2129, Predicted phosphoesterases, related to the Icc protein [General function prediction only].	4.59146e-30
NZ_CP012914.1\|WP_035670887.1\|2804150_2804927_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224049	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.06217e-117
NZ_CP012914.1\|WP_035670956.1\|2797329_2798961_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl\|CDD\|100087	cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP012914.1\|WP_137165137.1\|2800238_2800787_-\|hypothetical-protein	gnl\|CDD\|234609	PRK00068, PRK00068, hypothetical protein; Validated.	0.000118842
NZ_CP012914.1\|WP_059399066.1\|2789301_2789952_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	7.96627e-35
NZ_CP012914.1\|WP_035670890.1\|2803618_2804146_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	6.12453e-18
NZ_CP012914.1\|WP_035670951.1\|2800023_2800239_-\|hypothetical-protein	gnl\|CDD\|237864	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional.	0.006939
NZ_CP012914.1\|WP_014239131.1\|2789967_2790612_-\|type-VI-secretion-system-associated-protein-TagF	gnl\|CDD\|370730	pfam09867, DUF2094, Uncharacterized protein conserved in bacteria (DUF2094). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.41764e-51
NZ_CP012914.1\|WP_035670899.1\|2800953_2801730_+\|nucleotidyltransferase-family-protein	gnl\|CDD\|379721	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase. This family is likely to be an uncharacterized group of nucleotidyltransferases.	6.83907e-05
NZ_CP012914.1\|WP_051140061.1\|2795959_2796454_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	1.67369e-74
NZ_CP012914.1\|WP_059398970.1\|2794771_2795791_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP012914.1\|WP_035670893.1\|2802583_2803495_+\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	5.20193e-10
NZ_CP012914.1\|WP_104675347.1\|2805918_2806827_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.00859e-106
NZ_CP012914.1\|WP_035670880.1\|2806826_2807846_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.87445e-117
NZ_CP012914.1\|WP_158283108.1\|2794058_2794460_+\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	2.60358e-14
NZ_CP012914.1\|WP_167555909.1\|2796627_2797272_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	8.73722e-41

>NZ_CP012914.1|WP_035670956.1|2797329_2798961_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MVPVTCPTTPFDGQKPGTSGLRKAVKVFEQPRYLENFVQSIFDCVDGLSGSTLVIGGDGRYHNRTAVQTILRMAAANGVARAVVGRGGILSTPAASCVIRKRGAIGGVILSASHNPGGPDGDFGIKFNAANGGPAPESMTDAFFARSKAIAEFKTLESPDLDLDRLGETSLGGMAVEVIDPVADYAELMESLFDMAAIRKLFASGFRMVFDAMHAVTGPYATEILERRLGAPAGTVINGTPLEDFGGHHPDPNLAHAEELVERLFGPDAPDFGAASDGDGDRNMILGRNIFVSPSDSLAVLAANATHVPAFKGGLAGVARSMPTSRAVDRVAAKLGISCYETPTGWKFFGTLLDAGRINLCGEESFGTGADHVREKDGLWAVLMWLNVLAARGLSVAALMDEHWGTYGRTYYGRHDYEAIPQEAADALIAELRGTLPSLAGTDLGGRKVAAADEFAYTDPVDGSRSERQGLRVGFEDGSRIVYRLSGTGTSGATLRVYFERYEPVGGEHGLDAPVALKPLADLAAELAGIERHTGRTKPDVAT
>NZ_CP012914.1|WP_167555909.1|2796627_2797272_+|dienelactone-hydrolase-family-protein
MTASDGHRLTAYEARPVGPEKGRLLIVQEIFGINSHIRRVCDGYAADGYRTLAPALFDRAQRGVELPYDEAGVQRGRELMGAVSVDDALTDVAAGLAHLGGAEGAAVAGYCWGGTIAWAAASRLPVRAAIAYYGGGIGNRLDEAPRAPVLLHFGETDHAIPLTVAEAVRQRHPGAITHLYPAGHGFNCDERASYDAASATLAKRRTLGLLQAVF
>NZ_CP012914.1|WP_051140061.1|2795959_2796454_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MSAPADRSPTAGPFDLTPPTPEQRAVLVERLSDEERHVLLSHGTEAPFCGGLLDNKNPGTYACRLCGLPLFRSGTKFESGTGWPSFTAPYENAHLKLVQDNSYGMVRVETLCARCGSHQGHVFPDGPPPTGMRFCINSVSLAFLPEGQPLARSVQDWVEEGAAF
>NZ_CP012914.1|WP_059398970.1|2794771_2795791_-|LLM-class-flavin-dependent-oxidoreductase
MPTDHTARPPLSVLDLAPVPEGSTPGDALRNTLDLARHAERLGYRRYWLAEHHNMTGIASAATSVVIGHVAAGTATIRVGAGGIMLPNHSPLVIAEQFGTLEALFPGRIDLGLGRAPGTDQMTLRALRRDPSVAEQFPQDVLELQALLGPVQPGQRVQAVPGAGSNVPLWILGSSLFGGQLAAAFGLPYAFASHFAPDALMRALQVYRENFTPSAQLDRPYAMVGVNVVAAETDAEARRLFTSAQQSFARLIRGTRGQLPPPIDDIESFWSPLEKAQAMNMLSCSFVGSAETVRRGLDSFLAETGADEIMVASAIHDHAARVRSYEILAEVHGALRAAA
>NZ_CP012914.1|WP_014239127.1|2794461_2794632_-|hypothetical-protein
MAEFPHASRVNVTLDLPLDVYRRLEQQARYMSVTVEALLKTILAQQLYDSSLRNMD
>NZ_CP012914.1|WP_158283108.1|2794058_2794460_+|STAS-domain-containing-protein
MQIAEEVRGDVTILRPVGPIDSAAAPRFEARLSAALAPAAADAASDAPGKTPAGLVLDLSAVTQLTPAGLRSLLLAVRQARPGAGSAGGRADVRIVLAAVPGPIRGVLEEAGLAALLESHGDLDAAVRAASRQ
>NZ_CP012914.1|WP_059398968.1|2792613_2793957_-|DotU-family-type-IV/VI-secretion-system-protein
MESDGRFGGGAGLRDGGEFSAESGGGPRALPAFLAAGPAVAPEDRPKAEAPPDQPARLRGALNPLLAAAGPLLDLAGSLRERSGHENPEGLRDVILAEVRRFEEEAAAIGVPPEEVRVARFALCTMLDDVVRATPWGARCRWAREGLAVVVDPGAGGPDRFFDLLDTMLSDPRLHRLELELFYACLSLGFEGKFRDKPRGAHDLAHLRDELFRVLRRLRGERERALSPQWRGVAERFRPLGHVLPPWLAAVAVATLLGGLFLTLSASLGGRADAVVARLGALLPDRPLELVRAVPPPPPSAGPALAVRVTALLQPEIRSGAVAVLAGDDGALVIRIEGAGMFATGSDAIRARYRAVVDRVGQALGPEAGRVVVVAHTDDQTPRGGGLPTPEALTEARAVAVLKILERTLGAERLTAEGRGEREPLAPNTTPANRGANRRVDVRLYPE
>NZ_CP012914.1|WP_059398967.1|2790611_2792636_-|type-VI-secretion-system-membrane-subunit-TssM
MSASTPNRPRSMSEPSPHTRSKKSQSKVRRADPAMAPRLRWWTTLAVALSVGLLGWAVMPLLGFGGLARLLPALVLLALWYALNRHEDGRQSAANARFVEALAASRDPELKASLDELGTVRERLDAVIDRLKTQRFGARWGGQYLYQLPWYLVIGAPGSGKTTALANARLGAALGGGLDGMPVQNLGGTRNCDWWFTDEAVLIDTAGRYTTQDSRRAIDGRVWSGLLDLLKEHRPRQPVNGVLLTISLTDLAGWSDAERHNHAITIRQRLGELRAHLGIRVPVYLLCTKADLVDGFTTYFDPLDRAERAQIWGITFPVEDAPPGPLASFHAQYAALLRRLEERLPERLHQEPDIQRRGDAFAFPLRMAGFEAALADLVDTAFTAEAEEAVPLLRGIYLTSATQPGASAESPAQTFFLERLLPEVVFPEANMVGVDRALERARRRRHVWALGGTAAAGLLLGLAGLSSHRANEALLARAEAAVAVAEERLRALDTPPRSLTRVEDSDFLAVLPALDALRALPAGWTGRAERRASLLGFGLSQGERVGLPAEDVYRRALRSVFLSRIVLRLEEQLRTGWARPDLLRQSLRAYAMIGGREPLDPAVLAEWLAADWQRTLPGAAHEAERRALGDHLAALVEAGFAPVPPDEALVSRVLDVLGQPTAPMPRIPNNGGAG
>NZ_CP012914.1|WP_014239131.1|2789967_2790612_-|type-VI-secretion-system-associated-protein-TagF
MSPGFAVGFHGKVPARGDFVGYGLPRGVLLPWDAWLTEVLDAAVRQLGSPWERLFQSAPVWRFALSPGLCGEPPLAGIMMPSADRVGRQYPFTIVGTLPYGTDLAVVPVACLHWFTRAESIAADACRAGADVDALPARMAILGRPEPNGADPTVATVVEERVGPLPPRASLWWSRGGGRVPPSVLTCCGLPRSSRAAAFIDGAWERRGWDDLDG
>NZ_CP012914.1|WP_059399066.1|2789301_2789952_+|OmpA-family-protein
MFPTIGLLSLGLVLPAGPALAQSAAPAVPLGPNPSECEIQAALFGAAGPGCPSIVMKRPPPPPVAVATPPPPVSAPAQAPGPVAVPALPGPPPDPPVAALKAGLRAAFRINFDFNSARIRTDSRAVLDRIGAVMTAPEAAKARFRIVGHTDAVGGDAANRALSQRRADAVAEYLAERHGVRRDRLDTAGMGAREPLLPKKPKAAENRRVEIVNLGG
>NZ_CP012914.1|WP_035670951.1|2800023_2800239_-|hypothetical-protein
MATTRMMAELMAADLSVAGPIPPSPPTPDMPVPPPGMPDMPGDPSRPPIKEPPDAIPVPPEEPPPNPERLG
>NZ_CP012914.1|WP_137165137.1|2800238_2800787_-|hypothetical-protein
MARHPIPQGLLLAAGLVLCGAGPALAQGSCAALVDRFAAENNLSASPPPVATPPGSSGSTAGDGSLPSGSSGTTPDQLARSGGVVAPPASGDQAVIEPPRTGAPMPTAPAVRPDAAPNSGSSMESGSMGQAARNAQIESLVTAARSAAKDGNEQLCMESLDKARGLTRAAPGATGGTMGGGG
>NZ_CP012914.1|WP_035670899.1|2800953_2801730_+|nucleotidyltransferase-family-protein
MDGNRESRGREGRADVSAEAEAFYTESLKVLKESGIPFLLGGTYALSAYTGITRPTKDIDIFCRGGDFPRILAHFQDRGFGTEIEDERWIGKVLHGDLFFDVIFNSAAAINPVNDRWFEEDHRALVCGADVQLIPPTEMVFSKAFVQMRHKYDGPDVAHMILKQHAHIDWKRLLGHMEQYWEVLLMHVLNFRFIYPTERDHIPAWLLQELLDRLNERAKLPVPQTRICRGRLFSREDYRIDVTDWGFADVVGEETKHG
>NZ_CP012914.1|WP_035670897.1|2801722_2802454_+|metallophosphoesterase
MVEHIRAEGTIKVAAIGDIHVGETSTHPYRELFQEIADRADVLALAGDLTNHGKPREAEVLAEDLRAIGIPVVAVLGNHDHECGHVEELQRILEQAGVRFLDGNPVEIRGVGFAGVKGFGGGFENRMLDAFGEPAIKQFVQESLNEAMRLESALRQLETERTMVVLHYAPIAETVRGEPTEIYPFLGSSRLAETIDRFHVQAVVHGHAHHGSYAGKTLRGTPVYNVAQTIEKESGRPYALIEL
>NZ_CP012914.1|WP_035670893.1|2802583_2803495_+|DMT-family-transporter
MLTANLAALGAALCWAASGLIAIGPVRAIGSVAFNRLRMSIVFVGTALAATLLGGWQTLDLQGAAILALSGAVGIVMGDTALFWALGRIGPRRNSVIYATNAPITALLAWAVLGEALGPWTAVGIALVTAGVMLAIFFRASPVPNGTGTVPHDWESVRGRLLIGVGACLIAAVCQAAGSVIARPVMAAGADPIAAAAVRVGMSGLLLFAGGLLPGQRFGFGPGLTPRIFAQVVVNGFIGLGLGMTLLLIGLAHGNAGVVATLSATSPVLILPMLWVWTRQRPGAGAWAGAIVAVLGVALIVNR
>NZ_CP012914.1|WP_035670890.1|2803618_2804146_+|winged-helix-turn-helix-transcriptional-regulator
MASPRRKRSGADPAAPVLHLTRFLPYRLSVLSNTVSHTVAKLYEKRFGITIPEWRVIAVLGGGETLSAGEIAQRTAMDKVQVSRAISRMLDSGLILRESGATDRRKAQLTLTPKALAIYTEIVPLALAYERELTGALTEEEMGQLDGLLAKLQAQADALAARPTPLPAPHPPDAG
>NZ_CP012914.1|WP_035670887.1|2804150_2804927_-|ABC-transporter-ATP-binding-protein
MIDVKDLRVTFGHGADAVAAVQGVSFAVREGESFGLVGESGSGKSTVLRAVVGLNHDWTGSIAVAGAVQSRRREKGFFKSCQMVFQDPYGSLHPRHTIDRILAEPIAIHGLRDADARIDRVLRDVGLGPQFRFRYPHQLSGGQRQRVAIARALVLEPRVLLLDEPTSALDVSVQAEILNLLKRLRAEHALTYVLVSHNLAVVATMCDRLAVMNRGRIVEEMDVEALRRGAAREDYTRQLLRASQGYDRAAADSFKDFA
>NZ_CP012914.1|WP_104675346.1|2804923_2805907_-|ABC-transporter-ATP-binding-protein
MSETPLLEVENLRISFPTRTGVTQAVRGVSFTVGREKLGIVGESGSGKSMTGRAILRLVPPPGIVTADTLSFQGEDLLTLPENRLRGIRGRRISMVMQDPKFSLNPVMTIGAQIAEAYRVHSSAGKAEAKRRALEMLEAVRIRNPERVYGLYPHEVSGGMGQRIMIAMMLIPNPDLLIADEPTSALDVTVQMQVLAIMDELCSSRGMGMIFISHDLNLVASFCDRIIIMYAGRVVETCRASELHAAKHPYTRGLLDSLPRLDDTRAELPVLARDPSWLEDFPPSPPGGEGRGEGASASPEGSGKAQPPHPNPLPGGERGHGPVEGGR
>NZ_CP012914.1|WP_104675347.1|2805918_2806827_-|ABC-transporter-permease
MHVTENGLRAWLTAETPQSRGQARLGRVYLGWLAFTRNRLAMIGLGIVLLLVLMAALAPLLAPYDPYMQDLSQRLLPPSAAHWLGTDAFGRDILSRILYGSRLTLMIVALVAVTAPVAGLLIGTVAGYLGGWVDAVLMRVTDIFLAFPKLILALAFVSALGPGIENAIIAIAITSWPPYARIARAETITIRKSDFISAARLQGASTPRIILGHVVPLCSSSLIVRVTLDMAGIILTAAGLGFLGLGAQPPAPEWGAMIATGRQYVLEQWWVATMPGIAIFVVSLGFNLLGDGLRDVLDPKGQ
>NZ_CP012914.1|WP_035670880.1|2806826_2807846_-|ABC-transporter-permease
MPGRRHAIRGAGLLVSVALTVLGLLLVTFLIGRVVPIDPVIAVVGDRVSADTYARVRQELGLDLPLWQQFLRYVGDVLQGDFGTSVLTSRPVLEDILRVFPATLELATAALVVGVLLGIPAGVMAAVHRGRWPDHLIRVIGLIGHSIPIFWLGLMALLVFYARLDWAPGPGRVDVFYEGLVDPVTGVITVDALLAGESDVFWSALHHLVLPAGILGLYSVAYIARMTRSFMLDQLRQEYITTARVKGMSEARVIWRHALGNIAVPLTTVVALSYASLLEGSVLTETVFAWPGLGLYITNSLLSADMNAVLGGTLVVGAVFIGLNLLSDLLYRLLDPRAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP012914_3	3.7\|2436530\|35\|NZ_CP012914\|PILER-CR,CRISPRCasFinder,CRT	2436530-2436564	35	NZ_CP012916.1	287185-287219	0	1.0
NZ_CP012914_4	4.1\|2799498\|18\|NZ_CP012914\|CRISPRCasFinder	2799498-2799515	18	NZ_CP012914.1	387257-387274	2	0.889
NZ_CP012914_4	4.1\|2799498\|18\|NZ_CP012914\|CRISPRCasFinder	2799498-2799515	18	NZ_CP012914.1	2522974-2522991	2	0.889
NZ_CP012914_4	4.1\|2799498\|18\|NZ_CP012914\|CRISPRCasFinder	2799498-2799515	18	NZ_CP012916.1	382372-382389	2	0.889
NZ_CP012914_4	4.1\|2799498\|18\|NZ_CP012914\|CRISPRCasFinder	2799498-2799515	18	NZ_CP012917.1	82894-82911	1	0.944

1. spacer 3.7|2436530|35|NZ_CP012914|PILER-CR,CRISPRCasFinder,CRT matches to position: 287185-287219, mismatch: 0, identity: 1.0

cgtccgcgtccgcttggtcagagcgggcgcggcgg	CRISPR spacer
cgtccgcgtccgcttggtcagagcgggcgcggcgg	Protospacer
***********************************

2. spacer 4.1|2799498|18|NZ_CP012914|CRISPRCasFinder matches to position: 387257-387274, mismatch: 2, identity: 0.889

ttgccgaacccgcggtcg	CRISPR spacer
ttcccgaagccgcggtcg	Protospacer
** ***** *********

3. spacer 4.1|2799498|18|NZ_CP012914|CRISPRCasFinder matches to position: 2522974-2522991, mismatch: 2, identity: 0.889

ttgccgaacccgcggtcg	CRISPR spacer
ttgccgaagccgccgtcg	Protospacer
******** **** ****

4. spacer 4.1|2799498|18|NZ_CP012914|CRISPRCasFinder matches to position: 382372-382389, mismatch: 2, identity: 0.889

ttgccgaacccgcggtcg	CRISPR spacer
ttgccgaagtcgcggtcg	Protospacer
******** .********

5. spacer 4.1|2799498|18|NZ_CP012914|CRISPRCasFinder matches to position: 82894-82911, mismatch: 1, identity: 0.944

ttgccgaacccgcggtcg	CRISPR spacer
ttgccgaactcgcggtcg	Protospacer
*********.********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012914_3	3.7\|2436530\|35\|NZ_CP012914\|PILER-CR,CRISPRCasFinder,CRT	2436530-2436564	35	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	287185-287219	0	1.0
NZ_CP012914_3	3.7\|2436530\|35\|NZ_CP012914\|PILER-CR,CRISPRCasFinder,CRT	2436530-2436564	35	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	761415-761449	0	1.0
NZ_CP012914_3	3.7\|2436530\|35\|NZ_CP012914\|PILER-CR,CRISPRCasFinder,CRT	2436530-2436564	35	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	293200-293234	1	0.971
NZ_CP012914_2	2.1\|2425472\|35\|NZ_CP012914\|CRT	2425472-2425506	35	NZ_CP049749	Rhodococcus fascians A21d2 plasmid pA21d2, complete sequence	133392-133426	7	0.8
NZ_CP012914_2	2.1\|2425472\|35\|NZ_CP012914\|CRT	2425472-2425506	35	MN657140	Cryobacterium sp. strain ANT_H26B plasmid pA26BH1, complete sequence	23416-23450	7	0.8
NZ_CP012914_2	2.10\|2426074\|34\|NZ_CP012914\|CRT,PILER-CR,CRISPRCasFinder	2426074-2426107	34	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	169515-169548	7	0.794
NZ_CP012914_2	2.1\|2425472\|35\|NZ_CP012914\|CRT	2425472-2425506	35	MK937591	Microbacterium phage Cinna, complete genome	24557-24591	8	0.771
NZ_CP012914_2	2.6\|2425807\|34\|NZ_CP012914\|CRT,PILER-CR,CRISPRCasFinder	2425807-2425840	34	NZ_LR594691	Variovorax sp. WDL1 plasmid 3	362344-362377	8	0.765
NZ_CP012914_2	2.6\|2425807\|34\|NZ_CP012914\|CRT,PILER-CR,CRISPRCasFinder	2425807-2425840	34	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	519978-520011	8	0.765
NZ_CP012914_2	2.6\|2425807\|34\|NZ_CP012914\|CRT,PILER-CR,CRISPRCasFinder	2425807-2425840	34	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	311129-311162	8	0.765
NZ_CP012914_2	2.6\|2425807\|34\|NZ_CP012914\|CRT,PILER-CR,CRISPRCasFinder	2425807-2425840	34	NZ_AP014810	Methylorubrum populi strain P-1M plasmid pMPPM01, complete sequence	29450-29483	8	0.765
NZ_CP012914_2	2.7\|2425873\|34\|NZ_CP012914\|CRT,PILER-CR,CRISPRCasFinder	2425873-2425906	34	NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	436454-436487	8	0.765
NZ_CP012914_2	2.1\|2425472\|35\|NZ_CP012914\|CRT	2425472-2425506	35	AX955019	Sequence 1 from Patent WO03093461	19259-19293	9	0.743
NZ_CP012914_3	3.4\|2436327\|37\|NZ_CP012914\|PILER-CR,CRISPRCasFinder,CRT	2436327-2436363	37	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	373578-373614	9	0.757
NZ_CP012914_2	2.1\|2425472\|35\|NZ_CP012914\|CRT	2425472-2425506	35	NZ_CP051294	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence	169471-169505	10	0.714
NZ_CP012914_2	2.1\|2425472\|35\|NZ_CP012914\|CRT	2425472-2425506	35	NZ_CP033363	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence	169471-169505	10	0.714
NZ_CP012914_2	2.1\|2425472\|35\|NZ_CP012914\|CRT	2425472-2425506	35	MG641885	Salmonella phage PMBT28, complete genome	27344-27378	10	0.714
NZ_CP012914_2	2.7\|2425873\|34\|NZ_CP012914\|CRT,PILER-CR,CRISPRCasFinder	2425873-2425906	34	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1357567-1357600	11	0.676
NZ_CP012914_2	2.7\|2425873\|34\|NZ_CP012914\|CRT,PILER-CR,CRISPRCasFinder	2425873-2425906	34	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	488365-488398	11	0.676
NZ_CP012914_2	2.7\|2425873\|34\|NZ_CP012914\|CRT,PILER-CR,CRISPRCasFinder	2425873-2425906	34	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	774802-774835	11	0.676

1. spacer 3.7|2436530|35|NZ_CP012914|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtccgcgtccgcttggtcagagcgggcgcggcgg	CRISPR spacer
cgtccgcgtccgcttggtcagagcgggcgcggcgg	Protospacer
***********************************

2. spacer 3.7|2436530|35|NZ_CP012914|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtccgcgtccgcttggtcagagcgggcgcggcgg	CRISPR spacer
cgtccgcgtccgcttggtcagagcgggcgcggcgg	Protospacer
***********************************

3. spacer 3.7|2436530|35|NZ_CP012914|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 1, identity: 0.971

cgtccgcgtccgcttggtcagagcgggcgcggcgg	CRISPR spacer
cggccgcgtccgcttggtcagagcgggcgcggcgg	Protospacer
** ********************************

4. spacer 2.1|2425472|35|NZ_CP012914|CRT matches to NZ_CP049749 (Rhodococcus fascians A21d2 plasmid pA21d2, complete sequence) position: , mismatch: 7, identity: 0.8

tactgcctgttcgtcgacgaggcccaccgctacaa	CRISPR spacer
gactacctgttcgtcgacgaagcccacgagttcaa	Protospacer
 ***.***************.****** . * ***

5. spacer 2.1|2425472|35|NZ_CP012914|CRT matches to MN657140 (Cryobacterium sp. strain ANT_H26B plasmid pA26BH1, complete sequence) position: , mismatch: 7, identity: 0.8

tactgcctgttcgtcgacgaggcccaccgctacaa	CRISPR spacer
gactacctgttcgtcgacgaagcccacgaattcaa	Protospacer
 ***.***************.****** . * ***

6. spacer 2.10|2426074|34|NZ_CP012914|CRT,PILER-CR,CRISPRCasFinder matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 7, identity: 0.794

aggccgccccaggacttcatgagg---ccggacttgt	CRISPR spacer
gggccgccccaggacttcaccaggcgcccggcct---	Protospacer
.******************. ***   **** **

7. spacer 2.1|2425472|35|NZ_CP012914|CRT matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 8, identity: 0.771

tactgcctgttcgtcgacgaggcccaccgctacaa	CRISPR spacer
tacgcgccgttcgtggacgaggcccgccgctacct	Protospacer
***   *.****** **********.*******

8. spacer 2.6|2425807|34|NZ_CP012914|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LR594691 (Variovorax sp. WDL1 plasmid 3) position: , mismatch: 8, identity: 0.765

cgctgccgagcaacacgccgccccggccagcccg	CRISPR spacer
cgctgccgagcagcccgccgccccgataggccgc	Protospacer
************.* **********.. .***

9. spacer 2.6|2425807|34|NZ_CP012914|CRT,PILER-CR,CRISPRCasFinder matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 8, identity: 0.765

cgctgccgagcaacacgccgccccggccagcccg	CRISPR spacer
ccttgccgagcgacatgccgccccggccgaccgt	Protospacer
* .********.***.************..**

10. spacer 2.6|2425807|34|NZ_CP012914|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 8, identity: 0.765

cgctgccgagcaacacgccgccccggccagcccg	CRISPR spacer
cgctgccgagcaactcggcgccccgatcgaaacg	Protospacer
************** ** *******..*..  **

11. spacer 2.6|2425807|34|NZ_CP012914|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP014810 (Methylorubrum populi strain P-1M plasmid pMPPM01, complete sequence) position: , mismatch: 8, identity: 0.765

cgctgccgagcaacacgccgccccggccagcccg	CRISPR spacer
caaggccgagcaccgcgccgccccggcccgtgcg	Protospacer
*.  ******** *.************* *. **

12. spacer 2.7|2425873|34|NZ_CP012914|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.765

--gtccggtgcccaggctgtccccggcctggagcgt	CRISPR spacer
cggtc--atgcccaggctggccccggcctcgatctg	Protospacer
  ***  .*********** ********* ** *

13. spacer 2.1|2425472|35|NZ_CP012914|CRT matches to AX955019 (Sequence 1 from Patent WO03093461) position: , mismatch: 9, identity: 0.743

tactgcctgttcgtcgacgaggcccaccgctacaa	CRISPR spacer
gacctgctgatcgtcgacgaggcccaccactgcgt	Protospacer
 **.  *** ******************.**.*.

14. spacer 3.4|2436327|37|NZ_CP012914|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 9, identity: 0.757

agcacgaaggccgccggctcggcgatgccgacatgcg	CRISPR spacer
tacgcgaaggcagccggcacggcgatgccgtcctaca	Protospacer
 .*.******* ****** *********** * *.*.

15. spacer 2.1|2425472|35|NZ_CP012914|CRT matches to NZ_CP051294 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence) position: , mismatch: 10, identity: 0.714

tactgcctgttcgtcgacgaggcccaccgctacaa	CRISPR spacer
gccttcctgttcgtcgacgaggcgcacgccaccgg	Protospacer
  ** ****************** ***  *  *..

16. spacer 2.1|2425472|35|NZ_CP012914|CRT matches to NZ_CP033363 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence) position: , mismatch: 10, identity: 0.714

tactgcctgttcgtcgacgaggcccaccgctacaa	CRISPR spacer
gccttcctgttcgtcgacgaggcgcacgccaccgg	Protospacer
  ** ****************** ***  *  *..

17. spacer 2.1|2425472|35|NZ_CP012914|CRT matches to MG641885 (Salmonella phage PMBT28, complete genome) position: , mismatch: 10, identity: 0.714

tactgcctgttcgtcgacgaggcccaccgctacaa	CRISPR spacer
gactggctgttcgtcgacgaagcccaagacctctc	Protospacer
 **** **************.*****  .*. *

18. spacer 2.7|2425873|34|NZ_CP012914|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.676

gtccggtgcccaggctgtccccggcctggagcgt	CRISPR spacer
ccgcgatgcccaggctttccccggccttcacgaa	Protospacer
 . **.********** **********  *  .

19. spacer 2.7|2425873|34|NZ_CP012914|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.676

gtccggtgcccaggctgtccccggcctggagcgt	CRISPR spacer
ccgcgatgcccaggctctccccggccttcacgaa	Protospacer
 . **.********** **********  *  .

20. spacer 2.7|2425873|34|NZ_CP012914|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 11, identity: 0.676

gtccggtgcccaggctgtccccggcctggagcgt	CRISPR spacer
ccgcgatgcccaggctttccccggccttcacgaa	Protospacer
 . **.********** **********  *  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

601808 : 643782

Enterobacteria_phage(25.0%)

integrase,transposase

attL 599277:599296|attR 648931:648950

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
599277:599296	attL	NA	NA	NA	NA
WP_167555880.1\|601808_602027_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_059398587.1\|602314_602569_-	hypothetical protein	NA	NA	NA	NA
WP_035683858.1\|602613_603402_-	DNA/RNA non-specific endonuclease	H6X497	Enterobacteria_phage	1.5e-28	32.1
WP_107685985.1\|604073_604481_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_051141069.1\|604491_604920_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_051141068.1\|605075_606491_+	iron-containing redox enzyme family protein	NA	NA	NA	NA
WP_035683850.1\|606487_606823_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_051141067.1\|606809_608117_+	amino acid permease	NA	NA	NA	NA
WP_051141066.1\|608198_608648_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_059398589.1\|608829_609255_+	hypothetical protein	NA	NA	NA	NA
WP_059398590.1\|609546_610371_+	3'-5' exonuclease	NA	NA	NA	NA
WP_059398591.1\|610440_611091_-	hypothetical protein	NA	NA	NA	NA
WP_035676969.1\|611352_611997_+	hypothetical protein	NA	NA	NA	NA
WP_079285244.1\|612089_612773_+	thiaminase II	NA	NA	NA	NA
WP_035677048.1\|612830_613190_+	DUF4186 domain-containing protein	NA	NA	NA	NA
WP_035677053.1\|613367_613949_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	5.0e-34	48.4
WP_137165173.1\|614143_614749_-	hypothetical protein	NA	NA	NA	NA
WP_035677054.1\|615651_616842_+	hypothetical protein	NA	NA	NA	NA
WP_158283106.1\|616856_618518_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_079285246.1\|618502_618985_+	Mov34/MPN/PAD-1 family protein	NA	NA	NA	NA
WP_104675443.1\|619098_620164_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_035676977.1\|620301_621309_-	patatin-like phospholipase family protein	A0A1B2LRS3	Wolbachia_phage	1.1e-20	27.2
WP_059398593.1\|621986_623207_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.5e-43	44.4
WP_076612189.1\|624311_625982_-\|transposase	ISL3-like element ISAzba9 family transposase	NA	NA	NA	NA
WP_035683365.1\|626495_628835_+	AAA family ATPase	NA	NA	NA	NA
WP_035683363.1\|628831_630790_+	ATP-dependent helicase	NA	NA	NA	NA
WP_035683362.1\|631051_631420_-	DUF427 domain-containing protein	NA	NA	NA	NA
WP_035683360.1\|631668_632301_+	DNA polymerase III subunit epsilon	NA	NA	NA	NA
WP_035683358.1\|632568_633531_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_104675504.1\|633632_634829_+	MFS transporter	NA	NA	NA	NA
WP_143265649.1\|635130_635460_-	hypothetical protein	NA	NA	NA	NA
WP_137165175.1\|635499_635778_-	hypothetical protein	NA	NA	NA	NA
WP_035683354.1\|635962_636451_-	hypothetical protein	NA	NA	NA	NA
WP_137165176.1\|636447_638553_-	hypothetical protein	NA	NA	NA	NA
WP_137165177.1\|638549_640790_-	hypothetical protein	NA	NA	NA	NA
WP_137165178.1\|640794_641940_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_156355532.1\|642150_642312_+	hypothetical protein	NA	NA	NA	NA
WP_059399031.1\|642441_643782_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
648931:648950	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2888082 : 2907872

Stx2-converting_phage(50.0%)

integrase,transposase

attL 2888525:2888544|attR 2899306:2899325

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035670709.1\|2888082_2888481_+\|transposase	transposase	NA	NA	NA	NA
WP_035670722.1\|2888477_2888636_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
2888525:2888544	attL	NA	NA	NA	NA
WP_137165139.1\|2891409_2891859_-	hypothetical protein	NA	NA	NA	NA
WP_059398986.1\|2892408_2893512_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_137165140.1\|2894002_2895538_+	hypothetical protein	NA	NA	NA	NA
WP_035683817.1\|2895548_2897108_+	hypothetical protein	NA	NA	NA	NA
WP_059398987.1\|2897293_2898940_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.5e-125	51.5
WP_059398988.1\|2899024_2899372_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	9.5e-33	57.9
2899306:2899325	attR	NA	NA	NA	NA
WP_059398593.1\|2899612_2900833_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.5e-43	44.4
WP_167555881.1\|2900872_2901052_+	hypothetical protein	NA	NA	NA	NA
WP_107685996.1\|2901184_2901337_-\|transposase	transposase	NA	NA	NA	NA
WP_035683386.1\|2901393_2901780_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_137165141.1\|2902198_2903467_+	hypothetical protein	NA	NA	NA	NA
WP_137165142.1\|2903469_2904576_+	hypothetical protein	NA	NA	NA	NA
WP_079285690.1\|2904589_2905195_+	30S ribosomal protein S5	NA	NA	NA	NA
WP_079285689.1\|2905290_2905590_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_059398990.1\|2905768_2906203_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_051141077.1\|2906162_2906396_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_059398991.1\|2906588_2907872_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	7.3e-46	36.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_CP012919

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

112524 : 120179

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051141003.1\|112524_113517_+	AAA family ATPase	E9LUK9	Lactobacillus_phage	3.0e-15	31.2
WP_051141002.1\|113506_114376_+	ParB/RepB/Spo0J family partition protein	S5VTK0	Leptospira_phage	2.8e-09	33.3
WP_035683236.1\|114528_115932_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	2.8e-51	32.2
WP_035683234.1\|115964_117290_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.3e-82	41.0
WP_035683232.1\|117557_117854_-	hypothetical protein	NA	NA	NA	NA
WP_035683231.1\|117939_119187_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	A0A2D2W2B8	Stenotrophomonas_phage	1.7e-15	28.7
WP_035683243.1\|119186_120179_-	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	A0A2P1ELS8	Moumouvirus	8.7e-39	33.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage