CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009625	Brucella abortus 104M chromosome 1, complete sequence	0 crisprs	csa3,WYL,DEDDh	0	0	2	0
NZ_CP009626	Brucella abortus 104M chromosome 2, complete sequence	1 crisprs	csa3,cas3,DEDDh	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

545469 : 651634

Paenibacillus_phage(10.0%)

protease,tail,head,capsid,integrase,holin,transposase,portal

attL 644214:644228|attR 654105:654119

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_126955225.1\|545469_546226_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	4.7e-16	41.0
WP_054173984.1\|546597_547716_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_077281774.1\|548473_548626_-	hypothetical protein	NA	NA	NA	NA
WP_126358176.1\|548860_549223_-	hypothetical protein	NA	NA	NA	NA
WP_094866392.1\|549385_550148_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-21	40.8
WP_002975117.1\|550045_550363_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002963688.1\|550973_552329_+	phosphomannomutase	NA	NA	NA	NA
WP_002963689.1\|552399_553824_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	9.0e-53	30.8
WP_002963690.1\|553856_555029_+	AGE family epimerase/isomerase	NA	NA	NA	NA
WP_002969456.1\|555111_556221_+	glycosyltransferase	NA	NA	NA	NA
WP_109790518.1\|556569_556773_+	hypothetical protein	NA	NA	NA	NA
WP_002963692.1\|556912_558448_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-14	25.3
WP_002963693.1\|558468_559470_+	ABC transporter permease	NA	NA	NA	NA
WP_002969455.1\|559548_560511_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002963695.1\|560568_561621_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_016769677.1\|561628_562726_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_002966715.1\|562767_564075_-	xylose isomerase	NA	NA	NA	NA
WP_002966716.1\|564121_565573_-	xylulokinase	NA	NA	NA	NA
WP_002963699.1\|565605_566637_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002971540.1\|566898_567417_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002969452.1\|567323_567893_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_002963701.1\|568430_569894_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_002966717.1\|570045_571728_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	7.9e-40	30.6
WP_002969060.1\|571730_572327_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_002963705.1\|572517_573540_+	asparaginase	NA	NA	NA	NA
WP_002963706.1\|573584_574055_+	transcription elongation factor	NA	NA	NA	NA
WP_002963707.1\|574051_574441_-	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	3.5e-07	44.6
WP_002963708.1\|574437_574668_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_002963709.1\|574728_575721_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_002963710.1\|575876_576554_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_002963712.1\|577885_578248_-	hypothetical protein	NA	NA	NA	NA
WP_006210190.1\|578583_580095_+	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	1.4e-83	44.3
WP_002963714.1\|580284_581001_-	L,D-transpeptidase	NA	NA	NA	NA
WP_002971536.1\|581059_581302_+	hypothetical protein	NA	NA	NA	NA
WP_002963715.1\|581303_581957_-	haloacid dehalogenase type II	NA	NA	NA	NA
WP_002963716.1\|582179_582779_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.2e-38	42.6
WP_002963717.1\|582950_583286_-	hypothetical protein	NA	NA	NA	NA
WP_002963718.1\|583403_585512_-	S9 family peptidase	NA	NA	NA	NA
WP_002963720.1\|586084_586513_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	1.0e-20	47.6
WP_002969861.1\|586720_587032_-	hypothetical protein	NA	NA	NA	NA
WP_002966719.1\|587212_587668_+	hypothetical protein	NA	NA	NA	NA
WP_002969449.1\|587664_588459_+	hypothetical protein	NA	NA	NA	NA
WP_002966720.1\|588569_589886_+	amidase	NA	NA	NA	NA
WP_002963725.1\|589926_590352_-	SufE family protein	NA	NA	NA	NA
WP_002963726.1\|590431_590881_-	hypothetical protein	NA	NA	NA	NA
WP_002969448.1\|591171_593001_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	4.7e-22	28.9
WP_002971535.1\|592975_593944_+	peptidoglycan-binding protein	NA	NA	NA	NA
WP_002963729.1\|593957_594305_+	DUF1491 family protein	NA	NA	NA	NA
WP_002969865.1\|594315_595392_-	DUF2336 domain-containing protein	NA	NA	NA	NA
WP_002963731.1\|595589_596132_-	hypothetical protein	NA	NA	NA	NA
WP_002963732.1\|596124_596736_-	DUF1214 domain-containing protein	NA	NA	NA	NA
WP_002969866.1\|596742_598917_-	penicillin-binding protein 1A	NA	NA	NA	NA
WP_002963734.1\|599256_599769_+	hypothetical protein	NA	NA	NA	NA
WP_054173961.1\|599707_600955_+	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	1.9e-70	40.4
WP_002963736.1\|600986_602180_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	7.0e-67	40.0
WP_002963737.1\|602176_602554_+	hypothetical protein	NA	NA	NA	NA
WP_002963738.1\|602540_603209_+\|head,protease	HK97 family phage prohead protease	A0A2H4JAI0	uncultured_Caudovirales_phage	1.7e-30	41.1
WP_002966724.1\|603230_604505_+\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	2.8e-82	43.6
WP_002963740.1\|604669_605236_+	hypothetical protein	NA	NA	NA	NA
WP_002963741.1\|605232_605571_+\|head	phage head closure protein	NA	NA	NA	NA
WP_006072374.1\|605693_606101_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_002963743.1\|606141_606555_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_002963744.1\|606551_606893_+	gene transfer agent family protein	NA	NA	NA	NA
WP_002963745.1\|606936_607107_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_002970984.1\|607111_607657_+\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	2.8e-07	46.4
WP_006210193.1\|607659_608292_+	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	1.9e-47	47.1
WP_002963749.1\|609159_609582_+	peptidase P60	NA	NA	NA	NA
WP_002969445.1\|613513_613720_+	hypothetical protein	NA	NA	NA	NA
WP_002971526.1\|613881_614178_+	hypothetical protein	NA	NA	NA	NA
WP_002963753.1\|614256_614946_+	response regulator transcription factor	NA	NA	NA	NA
WP_002969444.1\|615020_616331_+	hypothetical protein	NA	NA	NA	NA
WP_002971524.1\|616424_616877_+	hypothetical protein	NA	NA	NA	NA
WP_002969443.1\|616977_618117_+	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_002963757.1\|618113_618611_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_002963758.1\|618630_620622_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_002963759.1\|620618_621095_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_054173962.1\|621236_622778_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	1.7e-28	29.8
WP_002963761.1\|622871_623579_+	response regulator transcription factor	NA	NA	NA	NA
WP_002966726.1\|623575_624982_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_002963763.1\|625104_628056_+	bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA	NA	NA	NA
WP_002966727.1\|628100_630212_-	hypothetical protein	NA	NA	NA	NA
WP_002963765.1\|630482_632834_-	PAS domain-containing protein	A0A1V0SGX0	Hokovirus	6.3e-27	34.8
WP_054173963.1\|633224_635876_-	aminopeptidase N	NA	NA	NA	NA
WP_002963767.1\|636101_637061_+	DMT family transporter	NA	NA	NA	NA
WP_002970986.1\|637065_638322_-	MFS transporter	NA	NA	NA	NA
WP_002963769.1\|638483_639356_-	uracil-DNA glycosylase	NA	NA	NA	NA
WP_002963770.1\|639744_641436_+	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_002969439.1\|641551_642520_-	AP endonuclease	NA	NA	NA	NA
WP_002963772.1\|642696_644199_-	AMP nucleosidase	NA	NA	NA	NA
644214:644228	attL	NA	NA	NA	NA
WP_002963775.1\|644765_645476_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA
WP_002963776.1\|645534_645882_-	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_002969438.1\|645878_646112_-	hypothetical protein	NA	NA	NA	NA
WP_002963778.1\|646381_646639_+	hypothetical protein	NA	NA	NA	NA
WP_002963779.1\|646698_647469_-	YitT family protein	NA	NA	NA	NA
WP_154018645.1\|647528_647801_-	hypothetical protein	NA	NA	NA	NA
WP_002963780.1\|648124_648775_+	hypothetical protein	NA	NA	NA	NA
WP_002963781.1\|648819_649194_-	DUF423 domain-containing protein	NA	NA	NA	NA
WP_002963782.1\|649211_650345_-	pyridoxal phosphate-dependent aminotransferase	A0A1X7QHI1	Faustovirus	9.1e-16	23.9
WP_002967515.1\|650707_651634_-\|integrase	site-specific integrase	A0A076YL28	Mesorhizobium_phage	2.9e-28	36.3
654105:654119	attR	NA	NA	NA	NA

DBSCAN-SWA_2

875452 : 887380

uncultured_Mediterranean_phage(90.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002968731.1\|875452_876304_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.4e-31	33.5
WP_002964011.1\|876296_877022_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.5e-43	45.7
WP_002964012.1\|877167_877386_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.5e-07	65.1
WP_002969412.1\|877496_878078_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_002964014.1\|878074_878899_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.8e-44	41.1
WP_002964015.1\|878975_880259_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.2e-104	47.2
WP_002966786.1\|880407_881175_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-39	40.2
WP_002964017.1\|881171_881840_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.2e-13	37.8
WP_002964018.1\|881984_882170_+	hypothetical protein	NA	NA	NA	NA
WP_002964019.1\|882218_883517_+	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	1.0e-18	41.1
WP_002964020.1\|883565_884432_-	ATP-binding protein	NA	NA	NA	NA
WP_002964021.1\|884592_884934_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.1e-12	40.2
WP_002969969.1\|885052_887380_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.2e-51	43.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009626

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009626_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009626_1

332558-332658

Orphan

Consensus_repeat	Method
ATGGACTTCTTGGAAGTCCATGCCGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009626_1

>merge|NZ_CP009626|1|332558-332658|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCCCCCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTTATGGACTTCTTAGAAGTCCATGCCGCCC

>NZ_CP009626|1|1|332558-332658|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCCC	CCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTT
ATGGACTTCTTAGAAGTCCATGCCGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009626.1\|WP_002966390.1\|330091_331483_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP009626.1\|WP_002966382.1\|337416_340335_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
NZ_CP009626.1\|WP_002972153.1\|326168_327299_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|183413
NZ_CP009626.1\|WP_002966378.1\|342770_344516_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP009626.1\|WP_002966383.1\|336083_337073_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP009626.1\|WP_002967189.1\|323148_323805_+\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NZ_CP009626.1\|WP_002968994.1\|321072_321900_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381357
NZ_CP009626.1\|WP_002966377.1\|344496_345060_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_CP009626.1\|WP_002966393.1\|327295_327991_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|237438
NZ_CP009626.1\|WP_002972151.1\|331632_331887_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009626.1\|WP_002966379.1\|342156_342630_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP009626.1\|WP_002971287.1\|340526_341198_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009626.1\|WP_002968826.1\|324651_326160_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223202
NZ_CP009626.1\|WP_002972147.1\|335147_335996_+\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
NZ_CP009626.1\|WP_002966396.1\|323923_324541_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP009626.1\|WP_002966386.1\|334370_334667_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP009626.1\|WP_002969286.1\|345145_346690_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP009626.1\|WP_002966392.1\|328063_329302_-\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NZ_CP009626.1\|WP_002966391.1\|329587_329989_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP009626.1\|WP_006084305.1\|341542_342103_+\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580

Protein	Function_ID	Function_description	E-value
NZ_CP009626.1\|WP_002966390.1\|330091_331483_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP009626.1\|WP_002966382.1\|337416_340335_+\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
NZ_CP009626.1\|WP_002972153.1\|326168_327299_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|183413	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	2.67267e-157
NZ_CP009626.1\|WP_002966378.1\|342770_344516_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	6.08227e-83
NZ_CP009626.1\|WP_002966383.1\|336083_337073_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	2.77791e-157
NZ_CP009626.1\|WP_002967189.1\|323148_323805_+\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	3.88001e-109
NZ_CP009626.1\|WP_002968994.1\|321072_321900_-\|aldo/keto-reductase	gnl\|CDD\|381357	cd19131, AKR_AKR5C2, Escherichia coli 2,5-diketo-D-gluconic acid reductase A (DkgA/YqhE) and similar proteins. Escherichia coli DkgA/YqhE is a founding member of aldo-keto reductase family 5 member C2 (AKR5C2). DkgA/YqhE (EC 1.1.1.274), also called 2,5-DKG reductase A, or 2,5-DKGR A, or 25DKGR-A, or AKR5C, catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG). It is also capable of stereoselective -keto ester reductions on ethyl acetoacetate and other 2-substituted derivatives.	3.08102e-178
NZ_CP009626.1\|WP_002966377.1\|344496_345060_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.21532e-78
NZ_CP009626.1\|WP_002966393.1\|327295_327991_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|237438	PRK13583, hisG, ATP phosphoribosyltransferase.	1.16784e-135
NZ_CP009626.1\|WP_002966379.1\|342156_342630_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	5.96751e-65
NZ_CP009626.1\|WP_002968826.1\|324651_326160_+\|histidine--tRNA-ligase	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	2.87411e-159
NZ_CP009626.1\|WP_002972147.1\|335147_335996_+\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.51221e-90
NZ_CP009626.1\|WP_002966396.1\|323923_324541_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	9.51794e-45
NZ_CP009626.1\|WP_002966386.1\|334370_334667_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.80408e-54
NZ_CP009626.1\|WP_002969286.1\|345145_346690_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.11164e-117
NZ_CP009626.1\|WP_002966392.1\|328063_329302_-\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.18971e-166
NZ_CP009626.1\|WP_002966391.1\|329587_329989_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.4232e-20
NZ_CP009626.1\|WP_006084305.1\|341542_342103_+\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	5.28453e-52

>NZ_CP009626.1|WP_002972151.1|331632_331887_-|hypothetical-protein
MRKELPIETAPKDGRKITVIWIDDDDQRNESIAQYRTLEQLRAGGGQWDEADTGWWTFTDNKTQRKIEPTAWIRETDDDESQED
>NZ_CP009626.1|WP_002966390.1|330091_331483_-|class-II-fumarate-hydratase
MAATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPVGFDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAPQ
>NZ_CP009626.1|WP_002966391.1|329587_329989_-|DoxX-family-protein
MSSITPKANGAATLIIRVFLSVLFIIAGYNKLTALDGTADYFASIGLPMPIVTAVVVGLIEFVGGLAILFGFKTRIAAVIVGLFTLGATLVAHMDFAEGMNLLIAQKNLAIAGGLFLLFLHGAGSLSIDARRG
>NZ_CP009626.1|WP_002966392.1|328063_329302_-|sugar-MFS-transporter
MATSIPTNNPLHTETSSQKNYGFALTSLTLLFFMWGFITCLNDILIPHLKNVFQLNYTQSMLIQFCFFGAYFIVSLPAGQLVKRISYKRGIVVGLIVAAIGCALFIPAASYRVYALFLGALFVLASGVTILQVAANPYVTILGKPETAASRLTLTQAFNSLGTTVAPVFGAVLILSAATDATVNAEADAVRFPYLLLALAFTVLAIIFAILKPPDVQEDEPALSDKKEGSAWQYRHLVLGAIGIFVYVGAEVSVGSFLVNFLSDPTVAGLSETDAAHHVAYFWGGAMVGRFIGSAAMRYIDDGKALAFNAFVAIILLFITVATTGHIAMWSVLAIGLFNSIMFPTIFSLALHGLGSHTSQGSGILCLAIVGGAIVPLIQGALADAIGIHLAFLMPIICYAYIAFYGLIGSKS
>NZ_CP009626.1|WP_002966393.1|327295_327991_+|ATP-phosphoribosyltransferase
MSVTLALPSKGRLKEKTLAVLEKAGYKVVLPDDDRNYRARVEGEDDLDILFLSASEIARELGYGSVDLGVTGEDLVRETLAHADERVAIEAQLGFGHADVVVAVPEVWRDVTTMADLDDVAADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDITSTGSTLRANRLKVLEDGIILRSQACLVSARRSHTSRRVEEIAARIRAGLEI
>NZ_CP009626.1|WP_002972153.1|326168_327299_+|ATP-phosphoribosyltransferase-regulatory-subunit
MVGSRTSPIFNALRVELNAREAELVEIPLIQPADPFLDMAGEDLRRRIFLTENENGDSLCLRPEFTIPVCRNHIALNAATPKRYAYLGEVFRQRRDGAAEFLQAGIEDLGAADEAASDARSLADALSCVKAIAPDAPLEIVLGDQSVFAGMLKALGLPQGWRKKLLRSFGDAHSMDLALAELTGTQRRDPLPESLAVLVAEGDEIGLARMLEAEMLEAGISPGAGRTPVEIARRLIEKEDLAATHFPAAALDLLRQFLAIRVSLDMAAVTLRAFAADNALDLGAVLQKFEARADAIAQAGIEMKDIIYDASFGRPLDYYTGLVYEIRDASNRQDGVLAGGGRYDRLLTMLGACEAIPGVGFSIWLDRLQALAGEKQ
>NZ_CP009626.1|WP_002968826.1|324651_326160_+|histidine--tRNA-ligase
MADKADKMKARLPRGFVDRVPDDLRAAEKMMATIREVYDLYGFEPVETPLVEYTDALGKFLPDQDRPNEGVFSFQDDDEQWLSLRYDLTAPLARYVAENFETLPKPYRSYRNGWVFRNEKPGPGRFRQFMQFDADTVGAPNVSADAEMCMMMADTLERLGIQRGDYAIRVNNRKVLDGVLDAIGLEGEGNAAKRLNVLRAIDKLDKFGPEGVRLLLGKGRLDESGDFTKGAQLPEAAIEKVLAFTAAGGADGAQTIANLQAVVAGNAKGEEGVQELADMQALFFAGGYEGRVKIDPSVVRGLEYYTGPVFEAELLFDVTNEDGQKVVFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVSRLMTALKNLGKLDVSDTVGPVVVLVMDKDTQNLGRYQKMVSDLRKAGIRAEMYVGGSGMKAQMKYADRRAAPCVVIQGSQEREAGEVQIKDLVEGKRLSAEIEDNVTWLESRPAQITVREDGLVDAVREILDAQARDRAEQSK
>NZ_CP009626.1|WP_002966396.1|323923_324541_+|LysE-family-translocator
MDLMSLVAFAGILVVAAGTPGPKVGALVARVISRGHKGVFPFMFGLWLGDAVWLSLAVWGLSALAHTFQTAFLVLKYAGVAYLIYLSWKMWFAPVDEEADENTIPRQGEGKRLFLSALGVTLGNPKIMVFYLAILPTVVDITHVSLTGWVELLLVMFMVLAAVDTAWVVLAAQARKFLRSPRMMRLANRTSAGMMAGAAVAIAAR
>NZ_CP009626.1|WP_002967189.1|323148_323805_+|DNA-3-methyladenine-glycosylase-I
MSDMAEARAGLVVGADGRTRCFWPGELPDYLAYHDNEWGVPVADDFRLFEKICLEGFQSGLSWLTILRKRENFRAAFDGFNFHRIATYDESDVERLLADKGIVRHRGKIVSVINNAGRAIELIEEKGSLAAYFWSFEPGAENRPAVVDYPTLVANPITATSTRISKDLKKRGWSFVGPTTVYAFMQAMGLVNDHIEGCHCRATIEKLRQNFKRPGKKL
>NZ_CP009626.1|WP_002968994.1|321072_321900_-|aldo/keto-reductase
MTVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLGQGKLLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLDMADGRIGPNPSVFSA
>NZ_CP009626.1|WP_002966386.1|334370_334667_-|co-chaperone-GroES
MADIKFRPLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILGIVG
>NZ_CP009626.1|WP_002972147.1|335147_335996_+|TIGR01459-family-HAD-type-hydrolase
MILPERLDDLTDRYDAIFCDVWGVVHNGETSFAPAIAALQRARAKGVTIILVTNSPRPHPGVVAQMSLLGVPEDAYDRVVTSGDVTRDLIAEGPRRIFHIGCERELAIYDGLDVELVEEFEAAGVVCTGLYDDEVETPEDYRELLQRLRARNLPFICANPDIMVERGPRLIWCAGALAREYGQLGGRTLIAGKPHRPIYEAALRAVESIRGGSVDKSRILGIGDGVLTDVKGAADFGLDVLYISGGVHAADYAVNGDLDMAKMEAFLEKHGHRPIASLHALV
>NZ_CP009626.1|WP_002966383.1|336083_337073_+|bifunctional-riboflavin-kinase/FAD-synthetase
MKKSSFQRLTGTEGLPPALHDCVVAIGNFDGVHRGHQAVLERALELAERESRPAVVLTFEPHPRSFFKQDQPVDRLTDAAEKAEILRLMGFDAVMEQPFTAEFSQRSAEDFVQHILVEKLRASRVVTGYDFHFGKGRRGTPEFLCEAGKKAGFSVTLVDAFTDEGGMLVSSTRIRNLLSEGEVAEAAGLLGYRYRICGEVIHGKKLGRTLGFPTANMALAPQTSLKHGIYAVRFRLDDAMLYDGVASFGRRPTVDDEGAPLLETFLFDFSGDLYGKTAAVSFFGFLRGEVKFDGLDPLIDQMKQDEAQARALLADVRPISGLDRMLSFN
>NZ_CP009626.1|WP_002966382.1|337416_340335_+|isoleucine--tRNA-ligase
MTDTTKIDYSKTLYLPQTEFPMRAGLPQREPLFVQRWEEMNLYKKLREQAKDRPLYVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGYNSNYVPGWDCHGLPIEWKIEEKYRAAGKNKDEVPINEFRKECREFASNWIKVQTEEFKRLAILGDFENPYTTMNFHAEARIAGELLKFAASGQLYRGSKPVMWSVVERTALAEAEVEYHDIESDMIWVKFPVAGEVATENDLSGSAVVIWTTTPWTIPGNRAVSYSSRIEYGLFEITEAENDFGPRPGERLVFADKLVEECCAKAKLQFKRLRSVSAEELGKIVLDHPLKGFGGGYEFVVPMLDGDHVTDDAGTGFVHTAPSHGREDFEAWMDNARQLEARGIDPNIPFPVGDDGFYTKDAPGFGPDREGGPARVIDDNGKKGDANKVVIEQLIAADKLFARGRLKHSYPHSWRSKKPVIFRNTPQWFVYMDKNLGDGTTLRSRALKAIDETRFVPAAGQTRLRSMIEGRPDWVLSRQRAWGVPICVFVDEEGNILQDDAVNKRIMDAFEKEGADAWFADGARERFLGARAGEGWTQVRDILDVWFDSGSTHTFTLEDRPDLKWPADVYLEGSDQHRGWFHSSLLESCGTRGRAPYNAVVTHGFTMDEHGKKMSKSLGNTVTPQDVIKESGADILRLWVMTTDYWEDQRLGKSIIQTNIDAYRKLRNTIRWMLGTLAHDEGENVAYADLPELERLMLHRLTELDELVRSGYDTFDFKRIARALVDFMNVELSAFYFDIRKDALYCDAPSSIRRKAALQTVREIFVRLTTWLAPMLPFTMEEAWLDRYPQSVSIHAEQFRPTPAEWRDDVLAEKWRKVRAVRRVVTGALELERADKRIGSSLEAAPVVYIADKSLSDSLEGLDFAEICITSGISVSDAAAPEGAFTLGDVKGVAVVPERAKGEKCARSWRYTTDVGADPEFPEVSARDAAALRELQALGKL
>NZ_CP009626.1|WP_002971287.1|340526_341198_+|hypothetical-protein
MKIEGRVLVLMTALAGLSLSGCVSSPTYGTDKSAGAQLLDDVSNMASFGQGKKKERIDYKPRPDLVRPAPGDKGYLPAPQQSLASSSDPNWPESPEQRRKRVRDEITAHRDDPNYVSPVLQDAPVADNIRTALPRGNSRREDYASRTPTSDPAKVAALKAARAQQNQGSATTRRYLSEPPLAYRQPASTAAVGELGPDEAQKERERKKAASGSRGWRDYLPWN
>NZ_CP009626.1|WP_006084305.1|341542_342103_+|cytochrome-b
MSSKTYIWDDRSGYGLVSRGFHWLMALLFLWQFASAILRVFAKDTPIYSFFWSAHFQLGFALLVLALLRGVWGLMNIHRRPHKDGAIGKLAVLGHLAIYVLMITIPSLALLRAYGSGRGFSFLGMPIFAKTDIQNAMLTAPANALHGPLGWVLLAAIVGHVAMALVYHFALRDDTLRYMTGHGTPN
>NZ_CP009626.1|WP_002966379.1|342156_342630_-|nucleoside-deaminase
MRKAASITKANSATPMDIALEEAHAAGERGEVPIGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEMLGSERLIDCDLYVTLEPCAMCAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQPTCHHAPEIYPGFCEADARKILKDFFREKR
>NZ_CP009626.1|WP_002966378.1|342770_344516_+|pseudouridine-synthase
MMAQGDAVTLLKGLYQMTTEDDNKGGKPPHGRKGHSDRPGRPDWDSRPRREGGDRDKPRKFGSRGAPVEEETSERIAKRLARAGIASRREAETMIAAGRIAVNGKVLESPAVNVKRTDIITVDGKPLRQTERTRLWLYHKPAGLVTTNRDPEGRPTVFEALPPEMPRVLSVGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQGANVWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLGDKLIEESGADFDAPVLNEFSNAAVQGRTRREMEEGELPQEGERRRAPREREWISSTGERRRGREEKTEKVEPRRRGNANVWMAPGARPKGEKEAAKPARVEHQQPHRSAKFSGDLQMRPRRFSEEERGGEESGERRYKRPEGRFEREGGRPDNREKYEKHEGAGKERRPGKRERAELRNAEGQTTERGKGGFEGRKPGKPGGPRSEGRFGGADRDTRSGPRGSGPRGAGDGPRRGHDGKPGGKPGGKPTGRPGGKPGTKPGGGGRSGGGGADRRR
>NZ_CP009626.1|WP_002966377.1|344496_345060_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNILAHSFPDKVEGVRVLDLFAGTGALGLEALSRGARYATFVEESAEGRGILRQNIEALGLQGHTKILRRDACQLGIVGTMEPFDLVFADPPYGRRMGEKAFLSALQGGWLNPDALLVLEEDAQAALELDDRFAVREERNYGGTVIRLIELKAAS
>NZ_CP009626.1|WP_002969286.1|345145_346690_+|insulinase-family-protein
MNTPHSGCLLLSTVLGFALALPLAGGAVRAEMQPAAPAETQPAPAAPAAPVAPAALPEIFRLDGVSNFTLPNGMQVVVIPDHRAPVVTQMVWYHVGAADEAPGVSGIAHFLEHLMFKGTKNHPAGEFSARIASIGGQENAFTSYDYTAYFQRVSPEALEMVMDFESDRMENLVLDEEAVKTEREVILEERRMRIDSNPGAMLMENTDAVLFYNHPYRKPVIGWQQEMEKLSLKNAIDFYNQYYTPNNATLVIAGDVTPERVRELAMKTWANVHKRAEVLLRERPQEPAKHAARVVTLHDERVSTPSFRISWLVPSYANEKRFANAKPGDAPALDLLSEILGGSQLSQLYQQLIVKQGIAAETGASYDGDALDDGTFSVYGVPRNGASLGDVEKAVAAQVDRIIRDGVTQAELDQARNRFLKAVIFARDSQTGMARIYGSALSVGQTVDDIQKWPDLIKSVTVDQIKDVARRYLVKDQAVTSYLLPPDTEAESARKKPNAPANDASASGAGGAIQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009625

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009626

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection