CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010517	Cupriavidus gilardii CR3 chromosome 2, complete sequence	3 crisprs	DEDDh,csa3	0	4	1	0
NZ_CP010516	Cupriavidus gilardii CR3 chromosome 1, complete sequence	2 crisprs	csa3,DinG,DEDDh,WYL,cas3	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010517_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010517_1

880605-880706

Orphan

Consensus_repeat	Method
GCCGCGACGGCCTGCTCCCTCTCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010517_1

>merge|NZ_CP010517|1|880605-880706|CRISPRCasFinder
GCCGCGACGGCCTGCTCCCTCTCCCGCAAGCGGGAGAGGGAGCCGTCAGCGAGCACGAGCGCGTACGCCTTCGAAGCCGCGACGACCTGCTCCCTCTCCCGC

>NZ_CP010517|1|1|880605-880706|CRISPRCasFinder
GCCGCGACGGCCTGCTCCCTCTCCCGC	AAGCGGGAGAGGGAGCCGTCAGCGAGCACGAGCGCGTACGCCTTCGAA
GCCGCGACGACCTGCTCCCTCTCCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010517.1\|WP_053823793.1\|883276_884080_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270217
NZ_CP010517.1\|WP_053823796.1\|886618_887581_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP010517.1\|WP_006576330.1\|874165_874639_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP010517.1\|WP_053823787.1\|876171_877557_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182324
NZ_CP010517.1\|WP_053823792.1\|882166_883048_-\|Ku-protein	unknown	unknown	gnl\|CDD\|238408
NZ_CP010517.1\|WP_170265856.1\|878918_879488_-\|N-acetyltransferase	unknown	unknown	unknown
NZ_CP010517.1\|WP_053823797.1\|887646_889329_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010517.1\|WP_053823788.1\|877661_878864_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP010517.1\|WP_053823791.1\|881306_882170_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP010517.1\|WP_053823783.1\|871353_872250_+\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	unknown	unknown	gnl\|CDD\|131370
NZ_CP010517.1\|WP_144426015.1\|870211_871357_+\|TauD/TfdA-family-dioxygenase	unknown	unknown	gnl\|CDD\|367137
NZ_CP010517.1\|WP_053824598.1\|884841_885594_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP010517.1\|WP_053823790.1\|879607_880468_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377177
NZ_CP010517.1\|WP_053823784.1\|872311_873262_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP010517.1\|WP_053823795.1\|885675_886374_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP010517.1\|WP_053823794.1\|884147_884801_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP010517.1\|WP_144425941.1\|889370_889841_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010517.1\|WP_082371866.1\|889749_890259_-\|DUF4142-domain-containing-protein	unknown	unknown	gnl\|CDD\|379301
NZ_CP010517.1\|WP_053823786.1\|874901_875975_+\|4-hydroxyphenylpyruvate-dioxygenase	unknown	unknown	gnl\|CDD\|273528
NZ_CP010517.1\|WP_053823785.1\|873297_873996_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|237220

Protein	Function_ID	Function_description	E-value
NZ_CP010517.1\|WP_053823793.1\|883276_884080_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.54857e-129
NZ_CP010517.1\|WP_053823796.1\|886618_887581_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	6.3498e-135
NZ_CP010517.1\|WP_006576330.1\|874165_874639_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.83537e-41
NZ_CP010517.1\|WP_053823787.1\|876171_877557_+\|amino-acid-permease	gnl\|CDD\|182324	PRK10238, PRK10238, aromatic amino acid transporter AroP.	0
NZ_CP010517.1\|WP_053823794.1\|884147_884801_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	7.63071e-75
NZ_CP010517.1\|WP_053823792.1\|882166_883048_-\|Ku-protein	gnl\|CDD\|238408	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.	8.10716e-114
NZ_CP010517.1\|WP_053823788.1\|877661_878864_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP010517.1\|WP_053823791.1\|881306_882170_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.3454e-18
NZ_CP010517.1\|WP_053823783.1\|871353_872250_+\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	gnl\|CDD\|131370	TIGR02317, Methylisocitrate_lyase, methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.	6.82217e-91
NZ_CP010517.1\|WP_144426015.1\|870211_871357_+\|TauD/TfdA-family-dioxygenase	gnl\|CDD\|367137	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. This family consists of taurine catabolism dioxygenases of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent taurine dioxygenase. This enzyme catalyzes the oxygenolytic release of sulfite from taurine. TfdA from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.	2.32846e-27
NZ_CP010517.1\|WP_053824598.1\|884841_885594_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.51893e-149
NZ_CP010517.1\|WP_053823790.1\|879607_880468_-\|hypothetical-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	8.87994e-07
NZ_CP010517.1\|WP_053823784.1\|872311_873262_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	7.20842e-128
NZ_CP010517.1\|WP_053823795.1\|885675_886374_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	6.13796e-34
NZ_CP010517.1\|WP_082371866.1\|889749_890259_-\|DUF4142-domain-containing-protein	gnl\|CDD\|379301	pfam13628, DUF4142, Domain of unknown function (DUF4142). This is a bacterial family of unknown function.	5.17451e-46
NZ_CP010517.1\|WP_053823786.1\|874901_875975_+\|4-hydroxyphenylpyruvate-dioxygenase	gnl\|CDD\|273528	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see . In some bacterial species, this enzyme has been studied as a hemolysin. [Energy metabolism, Amino acids and amines].	3.06245e-162
NZ_CP010517.1\|WP_053823785.1\|873297_873996_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|237220	PRK12828, PRK12828, short chain dehydrogenase; Provisional.	5.1719e-63

>NZ_CP010517.1|WP_053823790.1|879607_880468_-|hypothetical-protein
MELTQNFVKAKRPCADGYKWFLRNRHDGSDYQRLLDALVDAGRVGDACWLLDQFGPTDAALTLDALNAGALVFAGTLVVRGAIDVDSVVRAGRTIRAGGGIRAGTAIIAGEDIDCAGNLYSGGAIEAGGDIKAAWGIDVATFLDAKGSVRAGWDISAGEHIHVGRNLRAGDSIAAQHAIRCGGTLKADGDLQGHGISAGQGIEAGGAIRSSHHIEAGWGIKATGSIVADSAIKAGEGVQTDEEIITGPGYGIHAGLNVRIDIWDVSARIVARSKPQNLVSGAWQTG
>NZ_CP010517.1|WP_170265856.1|878918_879488_-|N-acetyltransferase
MRIDVEHAPDALEAELQALYDRLYLPGDCLHGIAATPSAQPGLVLRYREADGEYYFYVEDTVRRRLAGYTVFNRLVELDRRADRHLRAPHSKFAPPYQRRGLASAIYRSYLDAGHCLITGARQSPGAHALWEALAHNYERGYVDLRSKTLCYLGPEVYEPVLSELHTRMVLLGRGWTIPALASATGMVM
>NZ_CP010517.1|WP_053823788.1|877661_878864_+|aspartate/tyrosine/aromatic-aminotransferase
MFAHIDAYPGDPILSLNENFAQDPRQDKVNLTIGVCFDDEGRLPLMAAVREAEAALVADQGPRPYLPMAGIPGYRQAVQQLVFGADSAALAENRVATIQTLGGSGALRVGADFLKRYFPEAQVWISDPSWDNHRVVFERAGFQVNSYPYYDDATGGLRFDAMIDALRQVPKGHVVLLHACCHNPTGVDLNESQWREVIAVVKSRGLLPFVDMAYQGFGTSLDDDAFVIHELVREGVPCLVANSFSKNFSLYGERCGGLSVVCANAEEAGRVLGQLTGAVRANYSNPPTHGARIVGKVLTTPALRQSWEAELAAMRDRIAAMRTAIHDNLQRLAGGADLSRYLAQRGMFTYTGLSAEQVDTLRAEHGVYLVRSGRMCVAGLNHGNVAVVAKAIAGVMGAKG
>NZ_CP010517.1|WP_053823787.1|876171_877557_+|amino-acid-permease
MHADNTDRALHRGLKNRHIQLIALGGAIGTGLFLGIAQTIKMAGPSVLLGYAIAGIVAFFIMRQLGEMVVDEPVAGSFSYFANKYYGNFAGFMSGWNYWVLYILVSMAELSAVGIYVQYWWPEIPTWASALAFFLIINAVNLASVKSFGEAEFWFSIIKVAAIIGMIGFGGYLLVSGEAGPQATVANLWQHGGFFPNGVSGLVMAMAVIMFSFGGLELVGITAAEADSPEKTIPKATNQVIYRILIFYVGALGVLLSLYPWENVASGGSPFVLIFHALNSNWVANVLNVVVLTAALSVYNSGVYCNSRMLFGLARQGNAPKALLKVNRRGIPVVALGASAAATAVCVLINYLIPGKAFQLLMGLVVSALIINWAMISVIHLKFRAHKRSAGVTTRFQSFGYPLTNYLCLVFMAGILVIMYLTPDLRLSVYLIPVWLGVLAVCYRLRNKDAAQALPQGAPVR
>NZ_CP010517.1|WP_053823786.1|874901_875975_+|4-hydroxyphenylpyruvate-dioxygenase
MSDLFDNPMQLMGFEFVEFASPTPNVLEPLFEQMGFTLVARHRSKDVVLYRQGDVNFIVNREPNSLAAYFAAEHGPSACGMAFRVKDSHKAYARALELGAQPIEIPTGPMELRLPAIKGIGGAPLYLIDRFEDGKSIYDIDFEFVEGVDRRPVGHGLKLIDHLTHNVYRGRMAYWADFYEKLFNFREIRYFDIKGEYTGLTSKAMTAPDGKIRIPLNEESQKGGGQIEEFLMAFNGEGIQHIAFLCDNLIEVIDNLQMSGVPLATAPNQYYYENLEKRLPGHGQPVDQLQARGILLDGTTEGGQRRLLLQIFSKPLLGPVFFEFIQREGDEGFGEGNFKALFESLERDQIERGVLTV
>NZ_CP010517.1|WP_006576330.1|874165_874639_-|Lrp/AsnC-family-transcriptional-regulator
MHSIELDRTDRRLLDVLQEHGRASNLELAEAINLSPAQTLRRHRRLEESGIIKRYEARLDGAMLGFGVVAFIHVTMERGHIRDLSKFKGLVTELAQIQECFSVTGDIDYVLKVVARDLKSLSDFLLDTLMRIPGVSGVRSSVCLDEIKCTSAMPLEL
>NZ_CP010517.1|WP_053823785.1|873297_873996_-|SDR-family-NAD(P)-dependent-oxidoreductase
MAFDFHDKTVLITGAAGNLGRAVADAFARAGARLVLVDRPGVSPALPAGEHLAVEADLLDAAAVKRVVEQAIGSARRIDVVCNLAGGFGMGPVVGEGADAQWERMFDLNLRTVLNVSRAVVPHMIAAGGGRIVNVGANSSARGLAQMGAYCASKDALARLTEALSAEVRDQGIHVNAVLPSVLDTPENRAAMPDADASRWVDPAALADAILFLASDAARAIHGALLPVVNRA
>NZ_CP010517.1|WP_053823784.1|872311_873262_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MQRRDFLGLLAAAAILPRVAQAAAVTRMMVGATPGGGTDLVARALAAELEQRLKQSFIVENRGGAAGNIAAMAVAKADPDGGTLLLSYTSHAINPALFDKKPFDPLKDFTPISLIATSPLVLVSRPDLGVGNARELIALAKSRPGKLSLAVAGVGSANHLAGEMFKREAGIEMISVPYKGAAPAVADVVAGQADLLLGNVATVQPLLQAGKIKGLGVSTAQRLPSMPELAPIAEVVPNFDYSSWYGLLGPAGMPADAVAQLGKAVRAAVASPAMRKRLQGEGLVPVGSDAAEFTRFLQSEIARWAKVVAVTGTRVS
>NZ_CP010517.1|WP_053823783.1|871353_872250_+|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein
MNRTIVEAGRSRSLKERLRSPEPVLAPGVYDALSALLAEQAGFEALYLSGGAVAYTLLGRSDVGLTTATETADVLARIADRVSLPIIVDGDTGYGNALNTQRTVRAFERAGAAMIQLEDQGFPKRCGHLAGKSLVSTAEMCGKLRAALDARHDAGTLILARTDAVAVEGLDAAIERAEAYLACGVDALFVEAVVSAEDMGRVCERFAARIPLLANMVEGGKTPIQSASELGRRGYRIVIYPGGTVRFASRQLQRYFAGLKAAGTTRAFAGEMNDFDALNALIGTPELLDTGRRYAGED
>NZ_CP010517.1|WP_144426015.1|870211_871357_+|TauD/TfdA-family-dioxygenase
MQRPQPWTARQASEDRSWVLRLNEAQVQGMREALAHAKAVNKPLLEMEQADFPLNDAARDVLRQAIDTTQGRWGMCLLKGFPVDEWTEQEARLAYWGMSLHMGVARTQNRASEIMNDVRNEGGEYKVKGGRGYNTNAGLDFHQDSCDVVGLLCRRTAKAGGTSKVISSIALYEEVQRRRPDLIPVLKGTFFHSYQGTQDPSQPPYYRCPIFGSHPEYFAARTNRKNTAAAQRDFPELPRLTAQQIEALDLLDELMPSELLCYTMELEQGDMQLLNNYVTLHSRTPFEDHDEPDRKRHLFRLWLAVPGSQPLPDDWKEYYGDVRAGSVRGGVRGSAITQAFLDYERRQAAALNMLFEPWRPQVRQEDMARILANYTNAVAAT
>NZ_CP010517.1|WP_053823791.1|881306_882170_-|tetratricopeptide-repeat-protein
MSAVGKDSFTLKDIEGKFGVSRGTVASLTRAGLLEPAKGSRGERKYSFQDVVLIRTADSLKKANVPPRRVTRALQRLKAWSQDRPLSGVRVAAVGNGVVVSEAHRQWEVETGQLVMELQPSRSQPGAVLSIQSARKAEDRADDRADVGTDAGTDAGTWFQLGCQLEAQDMREAEQAYRRAIAIAPDYTDPYLNLGCLLTEAGRVQEAESLYRDAVAAIGDEPLLHFNLGVTLEDLERYEDALRSYHRCIDIAPDMADAHFNAARLHEQLGDAHRAIRHFNQYRKYCR
>NZ_CP010517.1|WP_053823792.1|882166_883048_-|Ku-protein
MAARSIASLSLSFGLVSIPVRVFSATESKSGVGFNLLHKGCGSRLRQQYVCQREGVVVERADMVKGYEFEKDRYVVFTPEELDALETGARHTIDIVAFMPTGAIDPIYFDKAYYLAPDKRGAKPYSLLTEAMRKTGTCALATWVWKGKQYMVQVRANDDGLVLQQLLYADEVRSMADLNVERTDIRPAELTLAEQLIEQSTVEAYDPAAYQDEEKQRVLAEIDKKIEGKKITVSATAERPSEGGEVIDLMAALKASLSKSQAAAKKPAREAAPRKGARRAAEPATPIRRTARK
>NZ_CP010517.1|WP_053823793.1|883276_884080_+|amino-acid-ABC-transporter-substrate-binding-protein
MKTLKALLIVSAVALFAACGKSEQAPAAAGGASAPAAAARTVVVGLDDNFPPMGFRDGNNEIVGFDIDMAKEAARRLGMTVEFKPIDWSAKEAELNGKRVDVLWNGLTITEERKKNISFTAPYMSNHQIIVVGSGSPIKAKADLAGRIVGAQDGSSAVDAIRKEAQVAASIKELKTFGDNVTALMDLSAGRLDAIVVDEVVGRYLVSKRAGEYRVLDENFGTEDYGVGLRKDDAELLAQLDKTLAEMKQDGTAARIAQQWFGANLIK
>NZ_CP010517.1|WP_053823794.1|884147_884801_+|amino-acid-ABC-transporter-permease
MDYVLSLLGPMAQGARITLSLFFITLALSVPLGLALALARLSAWRPLSVAVNGYIWLMRGTPLMLQLLFVYFALPLLPVVGVRLPDFPAAVVAFALNYAAYFAEIFRAGIQSVDRGQYEASKALGMSYLQTMRRVVLPQMVRRVLPPVSNETITLVKDTSLIYVLALNDILRTARGIVQRDFTTTPFLVAAAFYLLMTLLLTWMFQSLEKRYAAHDQ
>NZ_CP010517.1|WP_053824598.1|884841_885594_+|amino-acid-ABC-transporter-ATP-binding-protein
MIDARDIVKSFGANRVLHGVSLTLRKGEVVAVIGPSGSGKSTLLRCLNHLETIDGGSIEIEGETLAEPGADQRSRYVPDAEVRRICRKMGMVFQSFNLFPHMTVLQNIIEAPMTVKGIAREAIVPTADALLRKVGLLDKRDNYPSRLSGGQKQRVAIARALAMEPDIMLFDEPTSALDPELTGEVLRTMRQLADDHMTMLVVTHEMGFAREVAHRVVFMDQGRIVESAPSEAFFRAPQHPRTREFLAHML
>NZ_CP010517.1|WP_053823795.1|885675_886374_-|GntR-family-transcriptional-regulator
MASQIERVTMELRRRILAGELQAGERIREVQFSGELGVSRTPLRLALGELEKEGLLERLPTRGFRVRQVTLDEVAMAIDVRGTLEGMAARLLAEQGVTREVLEELQACVDEGRLLVEQALLGRDTPVDTARWAAMNARFHRALVEGAANPALASALDHIARTPMAGPGALGAAGVQPSLELAFVQRAQFDHEDVVRAIVAHEGARAEALMREHARRSRDNKRALVQGLHPAT
>NZ_CP010517.1|WP_053823796.1|886618_887581_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MAIAIASGLLAGAAPAFAASEPYPSKAIRLIVPFPAGGGGDTLARLVMTRVGKELGQTLVIENVAGAGGNIGSQAAAKAAPDGYTLLYGTNGTFAINHALYKRTGFDAMQDFVPVAQLTRIATMVVTRPGFPAKTFPELLQVLKANPGKYTVASAGNGTTSHLASELLKASTGVSMVHVPYRGGALALTDLMGGQVDLMIEVMPNVMPAVRAGKLQGLAVTTAQRVPSFPNVPTVAEQGVAGFEVSAWDGIFVPKGTPAEVAAKVHAAIQKALADPALRQQLLDRGAEPVPQSSAAFAQFVRAEYERWGALVKRSGASVD
>NZ_CP010517.1|WP_053823797.1|887646_889329_+|hypothetical-protein
MTANLATNADRNLNANPDTRSPAADDRSGLPHYDRPPLKDSRRPRCPPFVEITDADQLLPYLEHVARRPYNHGLNACWDLKEGERVLLRVDNWHSELTIQACQRILEKYKVKYEIQKVDRGPIPTWVGADEVDYYLFRTRELAQWMDMWEEEEKKQQYDKILMGYGGPVLAERFIKIQRMPFITPEILASPAHAMPIEVINAIDRWTWDRIRTARRARITDPEGTDISFTNHDDYWDARREFYHPDLTAATWRGNEHFGKTYLPGHITGRPWMFHPFKEDGCGVIAGTTNHIAPCDWTQLVVENSKITRINAGGEFGDKLRNVMEQTRDIQYPTFPGKGLMYWWEASIGTNPHIHRPRKDFPSGFVNCLYERVRSGVIHMGFGTIISSMAEREAARMGHLVGHWHLHLYFPTYTTERSGDNENIIENGRLLALDDPAIRKLCAKYGDPDLWLDESWNPAVPGINMQGDYWSHYAKDPLHWVKTELEVCRNYHPMFMRMVDADAKYCEGEGARWWKGGCCNHSGVQAPVLPGNCCGTEGSAVQDAAPAQAGHCCHGGAASD
>NZ_CP010517.1|WP_144425941.1|889370_889841_+|hypothetical-protein
MAADLALDGLWRGATLYLQRCATSGPWIDPTVFGQWTADHLRAFPVSSAAMMLGCGLPRAGIRNGTSAMALRIAAMVVAMPVLCAPGLQAAAAMPPNLQVAAYLATMWLLTLAIDGGLPALRARRGLTCRCRPSCSGRAPSADAAPDPARAWRQRP
>NZ_CP010517.1|WP_082371866.1|889749_890259_-|DUF4142-domain-containing-protein
MPATTATDESGTRGTARDTSKLVRADRSFLENAAQGGLAEVEGSKLAEQKASSADVKSFAARMIKDHTMVNEELTKLASSKGYTPPTEPSVVQRTELKGLSALDGERFDKMYASRIGVAAHEKTVKLFQEAAKNAKDPDIKAFAAKHVPDLEQHLQMARDLNKKVGNDK

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Crispr_ID: NZ_CP010517_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010517_2

1787414-1787544

Orphan

Consensus_repeat	Method
GCAGTGGTCACCTTCTTCGCAGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP010517_2

>merge|NZ_CP010517|2|1787414-1787544|CRISPRCasFinder
GCAGCAGTGGTTTTCTTCGCCGCGATGGTCTTCTGCACGGCGGCCGTCCTCTTCGCAGTGGTCACCTTCTTCGCAGCGCTCACCTTCTTTGCAGCGCTCACCTTCTTTGCAGCGGTCACCTTCTTCGCAGC

>NZ_CP010517|2|2|1787414-1787544|CRISPRCasFinder
GCAGCAGTGGTTTTCTTCGCCGC	GATGGTCTTCTGCACGGCGGCCGTCCTCTTC
GCAGTGGTCACCTTCTTCGCAGC	GCTCACCTTCTTTGCAGCGCTCACCTTCTTT
GCAGCGGTCACCTTCTTCGCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010517.1\|WP_053824711.1\|1799085_1799925_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378976
NZ_CP010517.1\|WP_144425991.1\|1794881_1795577_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP010517.1\|WP_053824371.1\|1786270_1787287_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133415
NZ_CP010517.1\|WP_053824378.1\|1796284_1797607_+\|amidase	unknown	unknown	gnl\|CDD\|235921
NZ_CP010517.1\|WP_053824379.1\|1797746_1799084_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP010517.1\|WP_053824370.1\|1785233_1786124_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377216
NZ_CP010517.1\|WP_053824374.1\|1790980_1792816_+\|CocE/NonD-family-hydrolase	unknown	unknown	gnl\|CDD\|273375
NZ_CP010517.1\|WP_053824364.1\|1774265_1774997_-\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223750
NZ_CP010517.1\|WP_053824367.1\|1782721_1783273_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|380339
NZ_CP010517.1\|WP_082371816.1\|1783427_1784387_+\|twin-arginine-translocation-pathway-signal-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP010517.1\|WP_053824373.1\|1789620_1790592_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NZ_CP010517.1\|WP_043436516.1\|1789056_1789533_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NZ_CP010517.1\|WP_053824366.1\|1781764_1782619_+\|D-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|238799
NZ_CP010517.1\|WP_053824369.1\|1784431_1785202_+\|aldolase	unknown	unknown	gnl\|CDD\|180832
NZ_CP010517.1\|WP_144426031.1\|1780341_1781388_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP010517.1\|WP_053824377.1\|1795610_1796288_+\|DUF2848-domain-containing-protein	unknown	unknown	gnl\|CDD\|371339
NZ_CP010517.1\|WP_053824375.1\|1792951_1793887_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183045
NZ_CP010517.1\|WP_082371886.1\|1775140_1777864_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP010517.1\|WP_053824376.1\|1793907_1794579_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225496
NZ_CP010517.1\|WP_053824708.1\|1778123_1780130_-\|alkaline-phosphatase-D-family-protein	unknown	unknown	gnl\|CDD\|226070

Protein	Function_ID	Function_description	E-value
NZ_CP010517.1\|WP_053824711.1\|1799085_1799925_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378976	pfam12852, Cupin_6, Cupin. This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.	1.47399e-26
NZ_CP010517.1\|WP_144425991.1\|1794881_1795577_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.76237e-45
NZ_CP010517.1\|WP_053824371.1\|1786270_1787287_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133415	cd04788, HTH_NolA-AlbR, Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	2.67328e-30
NZ_CP010517.1\|WP_053824378.1\|1796284_1797607_+\|amidase	gnl\|CDD\|235921	PRK07056, PRK07056, amidase; Provisional.	0
NZ_CP010517.1\|WP_053824379.1\|1797746_1799084_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.62904e-95
NZ_CP010517.1\|WP_053824370.1\|1785233_1786124_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377216	pfam04072, LCM, Leucine carboxyl methyltransferase. Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence.	8.67195e-46
NZ_CP010517.1\|WP_053824374.1\|1790980_1792816_+\|CocE/NonD-family-hydrolase	gnl\|CDD\|273375	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c., putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. [Unknown function, Enzymes of unknown specificity].	8.22718e-77
NZ_CP010517.1\|WP_053824364.1\|1774265_1774997_-\|glutathione-peroxidase	gnl\|CDD\|223750	COG0678, AHP1, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	3.76553e-91
NZ_CP010517.1\|WP_053824367.1\|1782721_1783273_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	2.69493e-28
NZ_CP010517.1\|WP_082371816.1\|1783427_1784387_+\|twin-arginine-translocation-pathway-signal-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	9.06438e-122
NZ_CP010517.1\|WP_053824373.1\|1789620_1790592_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	7.62912e-120
NZ_CP010517.1\|WP_043436516.1\|1789056_1789533_+\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	2.95976e-07
NZ_CP010517.1\|WP_053824366.1\|1781764_1782619_+\|D-amino-acid-aminotransferase	gnl\|CDD\|238799	cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.	9.11285e-130
NZ_CP010517.1\|WP_053824369.1\|1784431_1785202_+\|aldolase	gnl\|CDD\|180832	PRK07090, PRK07090, class II aldolase/adducin domain protein; Provisional.	0
NZ_CP010517.1\|WP_144426031.1\|1780341_1781388_+\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	3.25265e-05
NZ_CP010517.1\|WP_053824377.1\|1795610_1796288_+\|DUF2848-domain-containing-protein	gnl\|CDD\|371339	pfam11010, DUF2848, Protein of unknown function (DUF2848). This bacterial family of proteins has no known function.	4.45962e-105
NZ_CP010517.1\|WP_053824375.1\|1792951_1793887_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|183045	PRK11233, PRK11233, nitrogen assimilation transcriptional regulator; Provisional.	1.17591e-64
NZ_CP010517.1\|WP_082371886.1\|1775140_1777864_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.21714e-69
NZ_CP010517.1\|WP_053824376.1\|1793907_1794579_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	3.7948e-60
NZ_CP010517.1\|WP_053824708.1\|1778123_1780130_-\|alkaline-phosphatase-D-family-protein	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	1.84834e-82

>NZ_CP010517.1|WP_053824371.1|1786270_1787287_-|MerR-family-transcriptional-regulator
MLLKVGTLAKQTGLTVRALHHYDRIGLLKPSGRSAAGYRLYNRDDVARLHAIQVLRQSGLSLAAIGALLAGDGPPRHRIVTQQIEALDREIARATELRGRLVLLQTVLAAGGEPELEHWLAALREMRAYREYFSDAELATIFREWVATEAEWQPLLAEIRGAMARQWPADAIGTQALAARWMHLAMRWMQGDMERAVRWGEMIKQAAQQGFGGIDAAMVAYMESAVALRMAAWLRHLSPDELARLDKRLEPEWQALAQRARALIAAGTDPSAAASRTLLHDWDALVDRMVGHEAGLREKLLKAYRDEPLLQIGHMVDAEVREFVEAVRAHAGEAGRRR
>NZ_CP010517.1|WP_053824370.1|1785233_1786124_-|class-I-SAM-dependent-methyltransferase
MSQTETTALAQGRPSTTALMMAIARAVHQLLDEPIVLPDPVALPILGPELERAVRDDPYRYNDPMARPMRAAVVARAMVADAELAEASRAGVRQCVVLGAGLDTLAWRVPATDDGMRVFEVDHPATQAWKQDLMRQAALSLPDWAKSVSADLQHASLQGVLEEAGFRGDRPACFVWLGVTPYLTDSAIEATLRHVASLPPGTRIVFDYRVDAGVLPSFERVMAAHMAEQVAALGEPWLSAFVPEQLVQRLTAMGFGSVTDLDAPALNARYFPRRKDGLQTAGGGLRVLCARVGEGR
>NZ_CP010517.1|WP_053824369.1|1784431_1785202_+|aldolase
MADTFDLKKDELIARAQGEMQTRLTVPERSLREKVALTCRILFDGGHDSGLAGQITARADEPGRYYTQRLGLGFDEITAENLLLVDEDLRVLEGGGMPNPANRFHSWIYRARPDVNCIIHTHPFHAATLSMLEVPLMVSHMDTCVLYGDCAFLEKWPGVPVGNEEGEIISAALGDKRAILLAHHGLLVAATSVEEACVMALLFERAARMQLAAMAAGTIKPLPEALAAEAHDWILTPRRSQLTFEYYARRTLAARG
>NZ_CP010517.1|WP_082371816.1|1783427_1784387_+|twin-arginine-translocation-pathway-signal-protein
MVAVASCCLMTVNAAAAEPFPAKPIRLVVPFGAGGITDNIARLVGQEWSGALGQTVLIENRPGAGGLLAAQAAAKAAPDGYTVFMGTVGTQIVNPLIYPAGKLPYSPDSQFTPLGMVSKSPFMLAVATGVPARDLKEFLAYARNHPDRLDYGSAGSASAPHMSMELLKLLSGTKINHVPYKSGAEAVNAAIGGHVAAVIDAVPVVMPQVKAGKLRALAIANGTRSTAAPTVPTSQEAGLPSFETSSWNALYVPAGTPADVVEKLSSTLRTTLARPGLRGRLAAQGSEALAGTQQEYAAMMAAEKKKWAAVVDAAKIKAE
>NZ_CP010517.1|WP_053824367.1|1782721_1783273_-|helix-turn-helix-domain-containing-protein
MVNLAHRLRTLRRQRGFSLETLAEQTGLTRSYLSKLERGLSSPSIATILKIADAYGMGTGQLLGDARDSAHEVVCVSRAGEREPLSPSAREGTYRYEAIAAQRKVKAMEPFIMYPPREFPDEARSAHSGEEFLFVLKGQVEVMLGEQTIALSVGDSLYFDADLPHRIRTVGRAQAEVLVTTAK
>NZ_CP010517.1|WP_053824366.1|1781764_1782619_+|D-amino-acid-aminotransferase
MNSSSDAIVYLNGELTPLSEARIPVLDRGFIFGDGVYEVIPVYAGKPFRAAQHLARLSRSLDAIGIPNPHDETQWSALIARVMQANPMPDQMIYIQVTRGVAKRMHAFPKEVTPTVFIMANPMSLPPAAATERGVACVTMEDKRWLHCQIKSTSLLGNVLAAQNAAEHGVTEAIQFRDGMLTEASASNVWVVKDGTVSAPPKDNLILEGIRYGLIEELCARFEIPLVSRPVTRDEVFAADEVLLSSASKEILPVVTIDGKTIGSGTPGPVFKRLYAAYQQAKTA
>NZ_CP010517.1|WP_144426031.1|1780341_1781388_+|alpha/beta-hydrolase
MEEQKRHPIRNANRNLFRQALAHLPYKTIGAAAVLTAAGFLSYWTYLGINQGRLLFDARRRPPRELPEGITAYSHTIPGGMLRGYVYRGDAHCAVTDLLFYLPGRGEDVLETMQFLHWLPAEVGFATFDYRGLGHSDGSPSEAAAVADASQFLLHLRRVLPGTRVHVVGRSLGTGVAIQLADLQDFESLQLITPYDSLLELVRKRFPLVPLRQLMRHHFDSISHCKKVVQRTKVLLAEVDDVVPHECSERLMAAWPGPVAVETIPGSNHSDIIAHQSTWQALSEFALLFARRPDLDAHGNRLDETPAPAPTPEPAPASEHTAANDSGGGLEPPGLPVAAAPLRTDGAS
>NZ_CP010517.1|WP_053824708.1|1778123_1780130_-|alkaline-phosphatase-D-family-protein
MDRRQFLKWGSFITVSVATTGLAGCGGGDDNPDPPEPDLFDFRHGVASGDPRPDSVVLWTRVEGNNGRRHVNVRLQVSTQEDFSTLVVNDHLRALPEWDYTLRTKVTGLNAATTYYYRFRVGSRFSPVGRTRTAPAAGTPLSQLKFAFVSCQDWSINHWAGMEELAQQDLDFIVHTGDYIYEAVADGAPVNLVEGRHTPLSLPDGTTLPSGFRYATTLEDYRYLYKAYRSDARLQALHARFPMIAIWDDHEFSDDCWQDRQSYDADDDQTPQTARRRAANQAWFEFLPADVTLDLNNPSFQNIQIYRSFTFGNLATLLMTDERLYRADHLISEANAGGDVGSRFFIRRDTLKAAEDAKIAAAGGALTPVSMLGDAQRAWWQDRIGGAATTWKLWGNQVSLLRMQADLTEAIAELMVLRLIASNTALTPLRDQMETALTADLRAAVSSGTYPNNVAYANLRQLLSTQAGIDAANFDANIKPTLDSRLPPASLLATYVLNADQWDGYDAERRNLMAFLKTNNVRNVVALTGDIHAFFAGVVMDDYDAATPTPVMVDLVGAGLSSNTLMSTYKSVVDNDPRLAEIKALIYEEVSGAVVNTLNRTLQHFNPWMRYVETNVTGYAIVTLTPDRLNCAFHILKGLVDGNAPPQPATASVTTVEVPAGSAVVNVV
>NZ_CP010517.1|WP_082371886.1|1775140_1777864_-|insulinase-family-protein
MPAAAPTSPVPVATAEGITEYRLPNGLRVLLAPDAAQPTTTVNITYLVGSRHENYGESGMAHLLEHLLFKGTPSLPDGATGRQMASRGMQFNGTTAYDRTNYFATFAASEENLDWLLRMEADRMVNSTISRSALDSEMTVVRNELERGENSPTGVLLRQLAASAYHWHNYGKAPIGARSDIEHVGIDALQAFYRRYYQPDNAVLVITGQFDPQRTLASVSRYFGAIPRPARVLTEQYTVEPPQEGPREILLQRPGDIQVVAAQYHIGPGAHPDTAAMTLLVDILTAIPGGRLYHGLVEQRKAASQAGFVRALKQPGSVVFLAQVGKAQPLEPARTGLLELVEGIAARPITQEELDRAQRRARNGYERMLNDPASYGVALSEAIAKGDWRLMLIARDQIERVTVDDVNRVARHYLQRANRTLGQFIPVDVPGYVAIPPAPDLAELTRDYRGKPGAAPVAPFAPTPANIEAHTVRATLPNGLAMAMLPKPARGQRVQGQLVLRMGDVNSLRGLDAVGTLTAGMLMRGAGGRDRQQLIDAFEALSATVGVSGDAERVTVSFQAPREHLPQVLTLLRDVLREPSLPPAEFEVLRTTAIAGIQSQVRQPEALAPVVLGRHGNPYPRGDPRYVSTLEESIADLRAVQLEQVRDFHRRFYGASHAQFALVGDFDAAAVRRQVETLFGDWNAPMPFVRVERDFVPLHPASLAVPTPHKANASFIAALPIGMTMDHPDYAALAIANRIFGGSSMKSRLADRLRQQEGISYGATSYLRIGALDTAGRFGVQASFAPQNLPRLKAGVQRELRRFLREGVTEDELAEAKSGLRQQGLVTRSRDEALASILAYQLFVGQTMAFTAELERRIEQATVEQVNAAIRRYLGPDRFVEVYAGAWPDAGGAADPGKVAASPESGL
>NZ_CP010517.1|WP_053824364.1|1774265_1774997_-|glutathione-peroxidase
MLQSREGQRVPNVTFRVRENNEWKNLNTAELFDNKTVVVFSLPGAFTPTCSSTHLPRYNELAPVFARHGVDAILCVSVNDTFVMNEWAKDQESENIVMIPDGNGEFTDGMGMLVDKTDLGFGKRSWRYSMLVKNGVVDKMFIEPEEPGDPFKVSDADTMLAYVAPNAKKPDQVVVFSKEGCPFCAKAKQLLADNGYQYVDVPLEHKIRGKVLGAVSGTMTAPQVFINGKLIGGAEQVEQYLAA
>NZ_CP010517.1|WP_043436516.1|1789056_1789533_+|YtxH-domain-containing-protein
MHGNRPGLLPFAVAAAVGAAIMYLFDPQSGRRRRAELRDKAEASRHDMQDLAEKQAKRITDRMQGIAAKVRSATGLGKHAADDDTIAERVRAEMGRLVGHPGAIDVAVVGGRVWLSGHILSSEHEALLAAVRGVAGVQDIDDRLTVHDEAGNVPELQS
>NZ_CP010517.1|WP_053824373.1|1789620_1790592_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MYRSLMGATMAALMTLSGAAVAQDAYPNRPVRLIVPQSAGSGGDVVARMLGDKLGQELGQSVVVDNRAGANGIIGTSFVAKQPADGYTLLLTGVSQVSFNQHLYKSLPYDPQKDFTFIAPVVDTPFVLVTSKASGITSIAQFIEKAKSKPGGLTFGSAGVGNSTHLAMEMLADKAGIKLTHAAYKGSGPALTGVIAGEVDAMVSVVGSALPQITGGNVVPVAIVGQKRAKELPNVPTVKEAGLDVPVMPGWYALLGPANMDAKVVARLNASVQAFLSDPQVKSKLASLYLEPLAGSADAIKQRAVTDAKVWGEFIKRRGIQNS
>NZ_CP010517.1|WP_053824374.1|1790980_1792816_+|CocE/NonD-family-hydrolase
MSDIDLRGNAWKTPASAYLETRPSRYAIPDSPLSCHVTMRDGCRLAVDVFVPQPLEAEDSPASYPTIVVFTPYFRRFRLREPGAEPSPNTAKYRDAFVPKGYAVVVVDVRGTGASFGTRDALRSPTERDDYFEIADWIVAQPWSNGRIGSTGISYLGAAACFLASTGHPAVKAIAPLFAVSDIYSEQLYPGGLLSKVWVQAYDELMVALDQDDRALLARYPYFNDPRFDGPERVDADTDGSLVQAAIEQHRNNFALADLAPEFAFRDGATQHDPALDSGSCSPYRYLEGIAQDVAVYSVSGWYDGGGYANGAITRFLSLPNHDSRLLLGPWDHGARTNISPWRSHAASDFPMLAEVLRFFDHHLMQLPTGLEQEARVHYYSVHDEQWHAAPTWPPAERAQRLYLTADAESLSPACPATESDRDTMASFNWSTGRQTRYERLGAANIEDYYPDWSERQRDLLSFDGAVLTAPLSIAGHVVLNIGLAGSQPDAALHVFLSEVEASGEVRYITEGMLRALHRKTAPCPPEYRTTWPYRTFAKADAARLVPGQTERLHFAMLPVAWTLAAGSRLRLSIAGADRGHFPQVPYGRPPRLSIRLGGELASYLDLPIRG
>NZ_CP010517.1|WP_053824375.1|1792951_1793887_+|LysR-family-transcriptional-regulator
MDLKQLRYFARIVELESITAAADALHIAQPSLSQHVANLEAELDARLLVRGPSGTRPTDTGHILYRHAKMVLRQMEEAKAAVQHGRDVPCGHVTVGLPTSTSRVLALPLLRHVTEHFPDITLEIVEGSSADLAESLALQKLDLAVAMDVQQRPNMQSTPLLDEQLMLVGRPIAGHPHAITLAQAAALPLLLPSFPNSVRVLCDRALVSAGLQCRLVAETSAVSVLLSAVREGLGWTILPWSALAGDEESQLAAMSISDATLERRVSLCLSSSASLSLACRSVEAALQAIVSQMVESGQWKGVRLIGGALPG
>NZ_CP010517.1|WP_053824376.1|1793907_1794579_-|alpha/beta-fold-hydrolase
MTITPGTTTRTLIRGEAGDIELLIDAPKEAVQGIAVVGHPHPMQGGTADHKVPHQLARELTAHGFLAVRPNFRGVGGTQGEHDAGVGETNDMLAVVDHLREQYPDLPLALAGFSFGAFVAALASVQLAERGITIDHLILTGMPSGPVANHRSYDTPAVQANALVMHGENDERVALSAIFDWARPQQLPVVVVPGADHFFSGKLPVLRRQVASYLERPASSAEA
>NZ_CP010517.1|WP_144425991.1|1794881_1795577_+|GntR-family-transcriptional-regulator
MATSIRLVGTDDENGKQTASQTGAAMREMAYTEIKRRIISCEFRPGEPLNEAQVATMLGLGRTPVHQALHRLEVEGLVSIMPRKGVLVTPLSLNEVLDMIEVRATNEVLCATLACERGHDSDFKAMRDIVDRSPPLIAGRDIPALASLDLKFHTAMSAASRNRVLAELLRGLHEKQARFWFLSLSDPQHLENVYQEHLEIVDALERRDVPAVREAVRTHIDEFRKNIIRTL
>NZ_CP010517.1|WP_053824377.1|1795610_1796288_+|DUF2848-domain-containing-protein
MPTLHFQVAGGGELALDIQRLIIAGWTGRDLAAVQHHIEELQAIGVKPPASVPTFYPLAASLLTTAEVIEVPRDDSSGEIEVVLLQSNDGLYVGVGSDHTDRKVEAYDVTVSKQMCDKPVGTQVWRFEDVADHWDSLEMRCWRVRDGERALYQEGKVTRLLDPRELIQRLTGESSLPPGTAMFCGTQAVIGELGHGEAFEVELHDPVRNRTLRHAYRVQTLAVAE
>NZ_CP010517.1|WP_053824378.1|1796284_1797607_+|amidase
MSEPTIAALAAQLAAGQTTSVALTEQALARIGSHRSAGGAAFVEVDEAGALAAARAADQARAAGLVASPLAGLPVSIKDLFDVRGQVTRAGSRVLDGNAPAAADSPAVARLRAAGAVLIGRTNMSEFAFSGLGLNPHYGTPRSPFDAERIAGGSTSGGAVSVAEGMAVAALGTDTGGSIRIPSAFCGLTGFKPTARRVPLDGAVPLSTSLDSAGPLGRSVACCAAMDAVLSGETLDARPASLAGLRLYVTRDFVCDGVDADVAQAFEDMLSRLSAQGARIVPFDFPELRRLPEINAGGGLTAAEAWALHRDWLTRDGERYDQRVAQRIRRGAQQSAADYITLLAERRAMQQCVAERLRDADAWLMPTVAVAAPRLDALERDEDFFATNALVLRNPSVINFLDGCAVSLPAAPGIGLSVCGLHGSDARVLQVAGSIEPLLR
>NZ_CP010517.1|WP_053824379.1|1797746_1799084_+|MFS-transporter
MSSAMSGAAGALENAPPTEVARQCEVAYRKIAIRLIPFLVFLFILAWIDRVNVGFAKLQMLQDLQFSEAVYGFGAGIFFLGYFLFEVPSNLLLEKIGARKTLARITILWGLASMAMIFVTTPMQFYALRFLLGVFEAGFFPGVVLYLTYWFPAARRARINGLFMTSFAIAGVIGGPLAGFIMTTMDGVDGLANWQWLFVLEGIPSVLAGIAVMMYLPEKPANARWLSDTEKQLVTRTIEAENRDPAKHSTLRAAFANSRVWICAAIYFCVVSGNATIAFWSPSIIKELGVQGNLQIGLVSAIPFIAGTIAMVLNGIHSDRSGERRMHCAMATLLAAVGLTLTGLWLHSAMLALVALTLASIGILAAFPVFWSLPSAFLAGTAAAGGIALINSIGNLAGFVAPYMIGWFKTNTGQLSSGLYFVAFLEACATVLVLAAIRGRAAVAR
>NZ_CP010517.1|WP_053824711.1|1799085_1799925_-|AraC-family-transcriptional-regulator
MDRLTALLDRFRVRTRLFHTGKLCGRSTFEPLPGRAFLHVLRRGEMEVRHRPGETDVPRFHLAEPTLLLYPRPVHHQFINPPEDGSDFTCATLDFDGGERNPIVQSLPSLVRVPLDAVEGLGPALDLLFAEADQVRCGSRVLADRLFEVVLIQLLRWIIDHPAEVGVTSGLIMGLSDPRLAKALVALHRSPYEDWSLARMASTAGMSRSAFAAAFKEATGTTPAAYLTDWRLSLGASMMRSGRPVNLIATELGFASASSFSKAFRQRMGVSPRKWLAQS

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Crispr_ID: NZ_CP010517_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010517_3

2037936-2038262

Orphan

Consensus_repeat	Method
CGCAGAAACGGGTACG	PILER-CR

6 spacers

The CRISPR arrays of NZ_CP010517_3

>merge|NZ_CP010517|3|2037936-2038262|PILER-CR
CGCAGAATCGGGTACGGCTTCCCGATGCACGGCCGTCCTCCGCGTATCGACGCCCGCAGAAACGGGTACGCAATGCCGGTCCTGGCGAAGGCTCGGAGCGCGCAGAAACGGGTACGCGGCCGCAGGTTCTGGCTACCGATCGGCCGGCCTCGCGCGGCGGCGCACGCAGAAACGGGTACGGTCCGAGCGATTTTTTCCTTGGGACGCAGAAACAGGTACGGCTTGTTGCGTCCGCTTGCTACCGTCCGACACGCGGCTGCCTGCCGCAGAAACGGGTACGCGGAAGGACCGGCTGATTCCCCGCCTTGATGCGCAGAAACGGGTACG

>NZ_CP010517|3|1|2037936-2038262|PILER-CR
CGCAGAATCGGGTACG	GCTTCCCGATGCACGGCCGTCCTCCGCGTATCGACGCC
CGCAGAAACGGGTACG	CAATGCCGGTCCTGGCGAAGGCTCGGAGCG
CGCAGAAACGGGTACG	CGGCCGCAGGTTCTGGCTACCGATCGGCCGGCCTCGCGCGGCGGCGCA
CGCAGAAACGGGTACG	GTCCGAGCGATTTTTTCCTTGGGA
CGCAGAAACAGGTACG	GCTTGTTGCGTCCGCTTGCTACCGTCCGACACGCGGCTGCCTGC
CGCAGAAACGGGTACG	CGGAAGGACCGGCTGATTCCCCGCCTTGATG
CGCAGAAACGGGTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010517.1\|WP_170265859.1\|2035774_2037094_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP010517.1\|WP_006576725.1\|2037515_2037719_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP010517.1\|WP_144426000.1\|2032809_2033169_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010517.1\|WP_053824502.1\|2028745_2030320_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_CP010517.1\|WP_053824503.1\|2030490_2031462_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NZ_CP010517.1\|WP_053824500.1\|2024807_2026070_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP010517.1\|WP_053824740.1\|2034764_2035091_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010517.1\|WP_053824501.1\|2026461_2028654_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227113
NZ_CP010517.1\|WP_053824504.1\|2031738_2031921_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010517.1\|WP_053824739.1\|2020714_2022430_-\|N-acetylglutaminylglutamine-synthetase	unknown	unknown	gnl\|CDD\|132147

Protein	Function_ID	Function_description	E-value
NZ_CP010517.1\|WP_170265859.1\|2035774_2037094_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	8.94022e-171
NZ_CP010517.1\|WP_006576725.1\|2037515_2037719_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	5.98184e-36
NZ_CP010517.1\|WP_053824502.1\|2028745_2030320_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_CP010517.1\|WP_053824503.1\|2030490_2031462_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	2.43947e-46
NZ_CP010517.1\|WP_053824500.1\|2024807_2026070_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.94881e-76
NZ_CP010517.1\|WP_053824501.1\|2026461_2028654_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227113	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism].	0
NZ_CP010517.1\|WP_053824739.1\|2020714_2022430_-\|N-acetylglutaminylglutamine-synthetase	gnl\|CDD\|132147	TIGR03103, trio_acet_GNAT, GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.	0

>NZ_CP010517.1|WP_006576725.1|2037515_2037719_+|cold-shock-protein
MKTGIVKWFNDAKGFGFIKPDEGGDDLFAHFSEIQGSGFKSLQENQRVSFEVKNGPKGLQAANITPL
>NZ_CP010517.1|WP_170265859.1|2035774_2037094_-|NCS2-family-permease
MAAPSRRSPLERLFRLREHQTNVRTEILAGVTTFLTMAYIIFVNPTILGDAGMPKDAVFVATCVAAALGTLIMGFYANYPIAMAPGMGLNAYFAYTVVKGMGLPWEAALGAVFISGCLFLLVTLLRVREMIVNGIPHSIRVAITAGIGLFLAIVALKNAGIVTASPATLVTLGDLHQPSAVLAIVGFLAIVALDRLKVKGAILIGILLTTLLSFAFGGNTFHGIVSAPPSIDPTLFKLDITAALSIGIINVVLVFFLVELFDATGTLMGVANRAGLLKAGKMDRLNKALMADSTAIMAGSFLGTSSTTAYIESASGVQAGGRTGLTAVTVAVLFLACLFIAPLAGTVPAYATAPALLYVSCLMLRELVEIDWNDATEVVPAVLTALGMPFTYSVANGVAFGFVTYAGLKLLTGRAKDVPVMVWIIAAVFVFKFYYLPGH
>NZ_CP010517.1|WP_053824740.1|2034764_2035091_-|hypothetical-protein
MADAVAAVLAADDSVPPAIRQAVQGLLQRHRQLEADVARLRAQREEWIVNVLTYQALYHRYSGQTLHDPSDRLMRERDSMRRTIREQLRSGTTPTAMFDLPPHSVSSV
>NZ_CP010517.1|WP_144426000.1|2032809_2033169_+|hypothetical-protein
MKIRLCALAAMAIVCTSAAAGSFSHLDRSDDAEIHSHTALSNDIYVRGFGLSLGVLGAGAEEGEGLPPGRQAAVDDDGSMRQAARMPIDLLAASGDSVGYGGGLGSGCWKPASSLAPRR
>NZ_CP010517.1|WP_053824504.1|2031738_2031921_+|hypothetical-protein
MIRLPTASLRTVRLGTLALGIAALLASAGCDRSQPGPKPISGDAPAAETAPSTHPPVRKE
>NZ_CP010517.1|WP_053824503.1|2030490_2031462_-|YihY/virulence-factor-BrkB-family-protein
MFQPDPEHRNGRRRGLARMLPDRYTLRRTAMVVTAAVQSWFAHRAASKGAALSFYMLFSLAPILVLVISIAGLFFGAEAARGEIFAQLEGLLGTQGAAAIQQILAATHRAGGSGMAALIATGILIVGATSAFAELKASLDDIWEADATPAGGWRALVRTRLLSFGLVLVLALMLLVSLVVNAAIAVVQRFWDGMWFESWLAPVATTISSGFSFVVVSVLFAVVFKMLPRVRVTWRDVTMGAIITAVLFSIGKRLIGIYLGNSAVASSYGAAGSVVALMLWVYYSAQIFFFGAELTHQYALQFGSLRERQRRGEAPEPVGAGNR
>NZ_CP010517.1|WP_053824502.1|2028745_2030320_-|peptide-chain-release-factor-3
MSSLVSEIARRRTFAIISHPDAGKTTLTEKLLWFGGAIQVAGEVRARKADRHATSDWMELEKQRGISVTSSVMQFPYREHIVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDSVNGVEAQTIKLLNVCRLRDTPILTFINKLDREGRSPIELLDEIEDVLKIQCAPMTWPIGMGKSFRGVYHLIDDKVQLFDPHGDKGTAAILDGLDNPELDRVLGSQAEELRIEIELVRGASHAFDKAAFLAGKQTPVYFGSAINNFGVQSLLDALCDLSPPPQPRATDSRTVQPEEAKFSGFVFKIQANMDPRHRDRIAFVRVCSGRFTRGMKLLHVSAGKTVAINNAITFMAQDRNTTEEAYAGDIIGVPNHGTIRLGDVFTEGEPLKFTGIPSFAPEFFRRARLNNPLKVKQLQKGLQQLAEEGATQMFRPIASNELVLGAVGILQFDVVAHRLEHEYGVDAIFESHECATARWLKGDPAEIEKLIEKAGHNVALDGAGDHVYLAPSMVNLRLTQERFPNLQFMETREIV
>NZ_CP010517.1|WP_053824501.1|2026461_2028654_+|TonB-dependent-siderophore-receptor
MQAAFRLTAAAAGVALLCLSSSARAAEPVVTAQASPQAQAQAQAHAAPAAADADKTLSTVTVVGNWLDQPNETKVLEHPGARSIADRRTIEESGATNVREVLRRMPGVQVQDSNGTGGSDISLNVGVRGLASRLSPRSTVLLDGIPLAVAPYGQPQLSMAPLSMGNIDTIDVVRGAGSVRYGPQNVGGIINFVTRPIPQTFAAQASVETEIATHGGNVKTMPSLFIGGTNDNGLGGALMYSGVHGDGYRRGNDRVDIDDLMLKGSYRISSTDQITASYHYYEALADMPGGLTAAQYAADPFQSVRPYDTFAGRRNDVSLKYSHQDNNRKFEVLTYYTDSFRGSQIESESAGRRRLGSFPRHYHTFAVEPRYSQLFRGANVSHEVSVGYRYLRESSDEQASRTAFYTPGTVDPTTIASPMYQWRSGGTTANAVYIDDTINVGNWTITPGLRYEMIRSNVTDHFTQRRTDIKSDEPLPSLAVMYHVSDNWKLFGNAGVSFGPLQYFQIAQTTNGLAPEKAKTYELGTHFNANGWGGELTLFNIDFDDELQLRGGTMGSPDAWTNLGATRHRGVESSLRYDFGTLSKTLAGLSAYAGYTYTEATYNHGTFAGRDLPFYSRHVATAGVRYSRNRWTLNVDGFAQSRQHSPGDPTDGTPYRTEESANGALGDIPGYALVHMRLGYDFGKSMSNLKVAVGVKNLFDRRYFTRSTDNNLGKYVGMPRTFYVQATLAF
>NZ_CP010517.1|WP_053824500.1|2024807_2026070_-|MFS-transporter
MPSAPASTTPAASDPDSVFRDPGFRMFWCARLCTTIGYQILTVAVGWQMYDLTGDALMLGLVGLVQFLPSVVLLLMSGHVADRFDRRQIVRICQLTEAAIALGMAAASLAGWVRHEHIFIFVALLGATRAFETPTLQALLPSVVTPRQLPRAVALSSSATQTAIIVGPALGGFAYVAGPGVVYGIGALLFLAAATLITLLRLRQRPQRLTAPVSISTLFAGFAYIRSRPVLLGAISLDLFAVLLGGATALLPIYARDILHTGPWGLGLLRSSPAIGALATAIWLARHPLERKVGRVMFGAVALFGLATICFGLSTLLPLSMLALVVLGASDMISVVVRSTLVQLDTPDDMRGRVGAVNSVFIGASNQLGEFESGVTAAWLGPVGAVLLGGVGTLVVVAVWMRLFPALANRNRLHDSPGAS
>NZ_CP010517.1|WP_053824739.1|2020714_2022430_-|N-acetylglutaminylglutamine-synthetase
MHDAGGAPVQQDPAMQPSPAPAPVSARPNAMLDCGWGRLMFAPSFESPARLAAELQQEAPGRRDIALYVEAPQLLLAEAPQTLFLDPSLLFRRTLEDGDAAVATGAAGVTIRRLSTRADIAAINRLYASRHMVPLDPATVWRQRDHDAVVYLIAEDESTGDIIGSAMGVDHLLAFGDERGGSSLWCLVVDPQTHLAGVGQALVRELIALFAARGRKHLDLSVLHDNQHAIGLYHKLGFVQVDGFVVKHKNAINEPLFAGSSECDNLNPYAALIVKEARRRGIGVEIIDADAGIFSLRYGGREILCRESLSELTGAVAMTWCQDKALTRKRLEQVGLKVPAQRQIGTDAENLAFLAEHGSVVVKPAFGEQGRGISVDVRTEEHLRSAIETAHAEGGTVLLESFCPGQDLRIVVIGYEVVAAAIRKPAEVVGDGQADLKTLIERHSARRSAATGGESRIPLDAETERCLAAQGLTLQSVPAAGERVPVRKTANLHTGGTLHDVTAQLHPVLREAAQTAARALRIPVVGLDFLVPAADQPEYVIIEANERPGLANHEPQPTAERFVDLLFPFTS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010517_3	3.6\|2038216\|31\|NZ_CP010517\|PILER-CR	2038216-2038246	31	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	614101-614131	5	0.839
NZ_CP010517_2	2.1\|1787437\|31\|NZ_CP010517\|CRISPRCasFinder	1787437-1787467	31	JF412297	EBPR siphovirus 2, partial sequence	46754-46784	6	0.806
NZ_CP010517_2	2.2\|1787491\|31\|NZ_CP010517\|CRISPRCasFinder	1787491-1787521	31	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	833172-833202	7	0.774
NZ_CP010517_3	3.2\|2038006\|30\|NZ_CP010517\|PILER-CR	2038006-2038035	30	NZ_KY503037	Pseudomonas fluorescens strain PC24 plasmid pPHE24, complete sequence	95114-95143	7	0.767
NZ_CP010517_3	3.2\|2038006\|30\|NZ_CP010517\|PILER-CR	2038006-2038035	30	NZ_MH061177	Pseudomonas fluorescens strain P69 plasmid pG69, complete sequence	104918-104947	7	0.767
NZ_CP010517_2	2.1\|1787437\|31\|NZ_CP010517\|CRISPRCasFinder	1787437-1787467	31	NZ_CP031752	Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence	112204-112234	8	0.742
NZ_CP010517_2	2.1\|1787437\|31\|NZ_CP010517\|CRISPRCasFinder	1787437-1787467	31	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	856025-856055	8	0.742
NZ_CP010517_2	2.2\|1787491\|31\|NZ_CP010517\|CRISPRCasFinder	1787491-1787521	31	NZ_CP007256	Rhodococcus erythropolis R138 plasmid pCRE138, complete sequence	28284-28314	8	0.742

1. spacer 3.6|2038216|31|NZ_CP010517|PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 5, identity: 0.839

cggaaggaccggctgattccccgcc--ttgatg	CRISPR spacer
cggaaggaccggcggattccccatccgttga--	Protospacer
************* ********..*  ****

2. spacer 2.1|1787437|31|NZ_CP010517|CRISPRCasFinder matches to JF412297 (EBPR siphovirus 2, partial sequence) position: , mismatch: 6, identity: 0.806

gatggtcttctgcacggcggccgtcctcttc	CRISPR spacer
gatggtcttccgcaaggcggccgtcgattac	Protospacer
**********.*** **********  .* *

3. spacer 2.2|1787491|31|NZ_CP010517|CRISPRCasFinder matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

gctcaccttctttgcagcgctcaccttcttt	CRISPR spacer
gatcaccttcttggcatcgctcacctgcacc	Protospacer
* ********** *** ********* * ..

4. spacer 3.2|2038006|30|NZ_CP010517|PILER-CR matches to NZ_KY503037 (Pseudomonas fluorescens strain PC24 plasmid pPHE24, complete sequence) position: , mismatch: 7, identity: 0.767

caatgccggtcctggcgaaggctcggagcg	CRISPR spacer
aaatgccggtccttgcgaaggcgcagcaag	Protospacer
 ************ ******** *.* . *

5. spacer 3.2|2038006|30|NZ_CP010517|PILER-CR matches to NZ_MH061177 (Pseudomonas fluorescens strain P69 plasmid pG69, complete sequence) position: , mismatch: 7, identity: 0.767

caatgccggtcctggcgaaggctcggagcg	CRISPR spacer
aaatgccggtccttgcgaaggcgcagcaag	Protospacer
 ************ ******** *.* . *

6. spacer 2.1|1787437|31|NZ_CP010517|CRISPRCasFinder matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 8, identity: 0.742

gatggtcttctgcacggcggccgtcctcttc	CRISPR spacer
gaaggtcttctgcagggcggccgtgacgccc	Protospacer
** *********** *********  . ..*

7. spacer 2.1|1787437|31|NZ_CP010517|CRISPRCasFinder matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 8, identity: 0.742

gatggtcttctgcacggcggccgtcctcttc	CRISPR spacer
ctcgatattctgcacggcggccggcctgtta	Protospacer
  .*.* **************** *** **

8. spacer 2.2|1787491|31|NZ_CP010517|CRISPRCasFinder matches to NZ_CP007256 (Rhodococcus erythropolis R138 plasmid pCRE138, complete sequence) position: , mismatch: 8, identity: 0.742

gctcaccttctttgcagcgctcaccttcttt	CRISPR spacer
gctcaccttctttgcgccgctcaccggtgcg	Protospacer
***************. ********  . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1682566 : 1711124

Burkholderia_phage(46.43%)

capsid,terminase,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144425982.1\|1682566_1683574_-	hypothetical protein	A9YX14	Burkholderia_phage	1.7e-61	36.3
WP_053824282.1\|1683583_1685077_-	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	1.8e-64	34.3
WP_053824283.1\|1685079_1686261_-\|plate	baseplate J/gp47 family protein	A9YX12	Burkholderia_phage	1.1e-170	79.6
WP_053824284.1\|1686260_1686614_-	hypothetical protein	A9YX11	Burkholderia_phage	7.6e-46	79.5
WP_053824285.1\|1686622_1687339_-	hypothetical protein	A9YX06	Burkholderia_phage	6.9e-86	67.3
WP_144425983.1\|1687349_1688003_+	hypothetical protein	NA	NA	NA	NA
WP_053824287.1\|1687999_1688983_-	hypothetical protein	A9YX04	Burkholderia_phage	2.3e-108	68.8
WP_053824288.1\|1688979_1689294_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.4e-11	35.9
WP_053824694.1\|1689290_1689863_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.6e-21	41.2
WP_053824289.1\|1689871_1691707_-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	A0A0M4REK7	Salmonella_phage	3.0e-45	37.2
WP_053824695.1\|1691696_1691885_-	hypothetical protein	NA	NA	NA	NA
WP_053824290.1\|1692341_1692785_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	1.6e-40	55.2
WP_053824291.1\|1692796_1694272_-	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	1.1e-109	47.5
WP_053824292.1\|1694281_1694875_-	hypothetical protein	A9YX29	Burkholderia_phage	1.2e-78	73.2
WP_053824293.1\|1694878_1695250_-	hypothetical protein	A9YX28	Burkholderia_phage	4.1e-50	75.6
WP_053824294.1\|1695252_1695732_-	hypothetical protein	A9YX26	Burkholderia_phage	8.5e-48	64.8
WP_053824295.1\|1695758_1696145_-	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	2.2e-46	67.7
WP_053824297.1\|1696537_1697572_-	DUF2184 domain-containing protein	A0A0N7IRF2	Acinetobacter_phage	2.3e-127	67.3
WP_053824298.1\|1697585_1698080_-	hypothetical protein	A0A0P0I8F3	Acinetobacter_phage	2.6e-36	54.3
WP_082371803.1\|1699419_1700061_-\|capsid	minor capsid protein	A9YWZ8	Burkholderia_phage	1.1e-74	66.0
WP_082371804.1\|1700002_1701571_-	DUF1073 domain-containing protein	A0A0P0I486	Acinetobacter_phage	1.3e-161	63.8
WP_053824300.1\|1701567_1702575_-\|terminase	phage terminase large subunit	G0ZND4	Cronobacter_phage	5.4e-60	52.8
WP_053824301.1\|1702525_1702981_-	hypothetical protein	Q716H4	Shigella_phage	6.0e-19	40.0
WP_053824302.1\|1703313_1703742_-	hypothetical protein	C7BGG3	Burkholderia_phage	6.1e-13	38.1
WP_053824303.1\|1703793_1704225_-	hypothetical protein	NA	NA	NA	NA
WP_053824304.1\|1704214_1704481_-	hypothetical protein	NA	NA	NA	NA
WP_082371805.1\|1704470_1705136_-	restriction alleviation protein, Lar family	Q6V7U1	Burkholderia_virus	2.6e-10	42.1
WP_053824306.1\|1705128_1705548_-	hypothetical protein	A0A1R3Y5U4	Salmonella_virus	8.0e-10	51.7
WP_144425985.1\|1705540_1705738_-	hypothetical protein	NA	NA	NA	NA
WP_144425986.1\|1705730_1706000_-	hypothetical protein	NA	NA	NA	NA
WP_082371883.1\|1705999_1706431_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_082371806.1\|1706694_1707105_-	DUF1064 domain-containing protein	Q3HQZ9	Burkholderia_phage	2.0e-45	66.2
WP_053824308.1\|1707104_1708469_-	replicative DNA helicase	O80281	Escherichia_phage	3.5e-86	43.8
WP_053824309.1\|1708465_1709272_-	hypothetical protein	A0A1J0MCP9	Streptomyces_phage	1.4e-18	39.7
WP_158507298.1\|1709272_1709434_-	hypothetical protein	NA	NA	NA	NA
WP_053824310.1\|1709439_1709643_-	hypothetical protein	NA	NA	NA	NA
WP_158507299.1\|1709663_1710188_+	hypothetical protein	NA	NA	NA	NA
WP_053824312.1\|1710357_1710561_-	hypothetical protein	NA	NA	NA	NA
WP_158507300.1\|1710638_1711124_+	helix-turn-helix domain-containing protein	A0A0P0J076	Acinetobacter_phage	1.0e-08	46.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP010516

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010516_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010516_1

2229497-2229587

Orphan

Consensus_repeat	Method
GCGGGAGAGGGAGCACACACCGGGCAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010516_1

>merge|NZ_CP010516|1|2229497-2229587|CRISPRCasFinder
GCGGGAGAGGGAGCACACACCGGGCAGTTGCCAACGCGATCGGTTTGCTGCCCTCGCCCGCTTGCGGGAGAGGGGGCACACACCGGGCAGT

>NZ_CP010516|1|1|2229497-2229587|CRISPRCasFinder
GCGGGAGAGGGAGCACACACCGGGCAGT	TGCCAACGCGATCGGTTTGCTGCCCTCGCCCGCTT
GCGGGAGAGGGGGCACACACCGGGCAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010516.1\|WP_053822148.1\|2233497_2234160_+\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|367555
NZ_CP010516.1\|WP_053822139.1\|2209334_2216270_+\|Ig-like-domain-repeat-protein	unknown	unknown	gnl\|CDD\|380205
NZ_CP010516.1\|WP_053822151.1\|2237324_2238425_-\|putative-sulfate-exporter-family-transporter	unknown	unknown	gnl\|CDD\|225411
NZ_CP010516.1\|WP_053822143.1\|2221529_2223575_-\|VC_2705-family-sodium/solute-symporter	unknown	unknown	gnl\|CDD\|274698
NZ_CP010516.1\|WP_082371504.1\|2239493_2240726_-\|Kef-family-K(+)-transporter	unknown	unknown	gnl\|CDD\|182633
NZ_CP010516.1\|WP_053822150.1\|2236096_2236504_-\|heme-binding-protein	unknown	unknown	gnl\|CDD\|225734
NZ_CP010516.1\|WP_006579474.1\|2234973_2235387_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP010516.1\|WP_082371640.1\|2226083_2227034_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP010516.1\|WP_053822149.1\|2235625_2235970_+\|hemin-uptake-protein-HemP	unknown	unknown	gnl\|CDD\|378463
NZ_CP010516.1\|WP_082371503.1\|2218001_2220356_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|274550
NZ_CP010516.1\|WP_043441654.1\|2227121_2227670_+\|TIGR00645-family-protein	unknown	unknown	gnl\|CDD\|179964
NZ_CP010516.1\|WP_053822138.1\|2208074_2209040_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP010516.1\|WP_053822152.1\|2238527_2239457_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182768
NZ_CP010516.1\|WP_053822146.1\|2229682_2230519_+\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP010516.1\|WP_053822142.1\|2220360_2221533_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP010516.1\|WP_023263789.1\|2234206_2234935_+\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
NZ_CP010516.1\|WP_053822144.1\|2223667_2225650_-\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_CP010516.1\|WP_053822140.1\|2216524_2218009_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP010516.1\|WP_053822147.1\|2230607_2232908_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223540
NZ_CP010516.1\|WP_053822145.1\|2227887_2229411_+\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|224862

Protein	Function_ID	Function_description	E-value
NZ_CP010516.1\|WP_053822148.1\|2233497_2234160_+\|energy-transducer-TonB	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	8.44977e-21
NZ_CP010516.1\|WP_053822139.1\|2209334_2216270_+\|Ig-like-domain-repeat-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	5.57472e-12
NZ_CP010516.1\|WP_053822151.1\|2237324_2238425_-\|putative-sulfate-exporter-family-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	3.24259e-75
NZ_CP010516.1\|WP_053822143.1\|2221529_2223575_-\|VC_2705-family-sodium/solute-symporter	gnl\|CDD\|274698	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.	3.5022e-124
NZ_CP010516.1\|WP_082371504.1\|2239493_2240726_-\|Kef-family-K(+)-transporter	gnl\|CDD\|182633	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional.	0
NZ_CP010516.1\|WP_053822150.1\|2236096_2236504_-\|heme-binding-protein	gnl\|CDD\|225734	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only].	6.91015e-45
NZ_CP010516.1\|WP_006579474.1\|2234973_2235387_+\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	3.99501e-46
NZ_CP010516.1\|WP_082371640.1\|2226083_2227034_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.64247e-17
NZ_CP010516.1\|WP_053822149.1\|2235625_2235970_+\|hemin-uptake-protein-HemP	gnl\|CDD\|378463	pfam10636, hemP, Hemin uptake protein hemP. This is a bacterial family of proteins that are involved in the uptake of the iron source hemin.	7.10883e-14
NZ_CP010516.1\|WP_082371503.1\|2218001_2220356_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP010516.1\|WP_043441654.1\|2227121_2227670_+\|TIGR00645-family-protein	gnl\|CDD\|179964	PRK05208, PRK05208, hypothetical protein; Provisional.	1.20926e-98
NZ_CP010516.1\|WP_053822138.1\|2208074_2209040_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.90056e-21
NZ_CP010516.1\|WP_053822152.1\|2238527_2239457_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182768	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional.	1.12573e-104
NZ_CP010516.1\|WP_053822146.1\|2229682_2230519_+\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	6.82125e-118
NZ_CP010516.1\|WP_053822142.1\|2220360_2221533_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	2.6492e-91
NZ_CP010516.1\|WP_023263789.1\|2234206_2234935_+\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	2.03425e-55
NZ_CP010516.1\|WP_053822144.1\|2223667_2225650_-\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_CP010516.1\|WP_053822140.1\|2216524_2218009_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	8.10056e-44
NZ_CP010516.1\|WP_053822147.1\|2230607_2232908_-\|AAA-family-ATPase	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	5.05274e-35
NZ_CP010516.1\|WP_053822145.1\|2227887_2229411_+\|fumarate-hydratase	gnl\|CDD\|224862	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion].	1.35072e-142

>NZ_CP010516.1|WP_053822145.1|2227887_2229411_+|fumarate-hydratase
MTVIKQEDLIQSVADSLQYISYYHPMDYITSLGRAYELEQSPAAKDAIAQILTNSRMCAEGKRPICQDTGIVTVFVKVGMDVRWDGATMGLTDMINEGVRRGYTHPDNVLRASIVNPPEGGRKNTKDNTPAVIHYEIVPGDKVDIQVAAKGGGSENKSKFVMLNPSDSIVDWVLKTVPTMGAGWCPPGMLGIGIGGTAEKAMVMAKESLMESIDIQDIIARGPKDWIEELRVELYEKVNALGIGAQGLGGLATVLDVKIMAAPTHAASKPVAMIPNCAATRHVHFTLDGSGPARLEAPDLSQWPKVEWAPNTETSKRVDLNTLTPEEVASWKPGQTLLLNGKMLTGRDAAHKRIADMLAKGEKLPIDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTETMLSQTGLIAMIGKAERGPVAIEAIQKHKSAYLMAVGGAAYLVSKAIRGAKVLAFEDLGMEAIYEFDVKDMPVTVAVDSSGTSVHKTGPAEWQARIGKIPVAAL
>NZ_CP010516.1|WP_043441654.1|2227121_2227670_+|TIGR00645-family-protein
MASNLSPEPHRMRPIPRLIFASRWLQLPLYLGLIVAQGVYVYHFLMEVWHLLAHVTEYDENKIMLVVLGLIDVVMISNLLIMVIVGGYETFVSRLGIDNHPDEPEWLDHVNAGVLKVKLSMALIGISSIHLLKTFIDAGQRDTHTIMWQVVIHVAFLFSAIAMAWVDKMITHSHPALQDRGL
>NZ_CP010516.1|WP_082371640.1|2226083_2227034_+|DMT-family-transporter
MALVGSNVGLGKAIVAHVPILLFALLRFVIAIVCLSPWYRPARMRRVSRREWFNLFLQAFFGTFLFTLLMLGGVRLTSAMSAGVITSTIPATVAILSWLVLRERLSRRTVLAVLLAVAGIAVLNIARGGQPGGAGADALLGNLMVMGAVVCESIYVILSRRLAQTLAAIEICAYTHLIGGLLMLPLGLVPLLDFDAGAVPLHVWAMVLWYALSASVFSFWLWMKGIRHVPAQLAGVFTSVLPIAAALYGIVFLGETPGWAHGVALVCVLAGIALASWPGKLARAAAARGDGSGQARGIASAGIEPEPGATVQSRGR
>NZ_CP010516.1|WP_053822144.1|2223667_2225650_-|acetate--CoA-ligase
MSAIESVMQEHRVFPPPESFAKSAAISGMDAYRALCEEAERDYEGFWARHAREQLVWAKPFTKVLNESNAPFYKWFEDGQLNASYNCLERNLENGNADKVAIVFEADDGTVTRVTYRELHARVCQLANGLKALGIKKGDRVVIYMPMSIEGVCAMQACARIGATHSVVFGGFSAKSLQERLVDVGAVALLTADEQMRGGKALPLKAIADEALALGGCEAVKHVLVYRRTGGKVNWVEGRDRWLDEVCAGQPETCEAEPVDAEHPLFVLYTSGSTGKPKGVQHSTGGYLLWALMTMKWTFDIKPDDLYWCTADIGWVTGHTYIAYGPLAAGATQLMFEGIPTYPNAGRFWDMIARHKVSVFYTAPTAIRSLIKAAEADQAVHPKQYDLSSLRLLGTVGEPINPEAWMWYHENIGRGRCPIVDTFWQTETGGHMITPLPGATPLVPGSCTLPLPGIMAAVVDETGQDVPNGSGGILVVKRPWPAMIRTIWGDPERFKKSYFPAELGGKLYLAGDGAVRDKETGYFTIMGRIDDVLNVSGHRMGTMEIESALVANPIVAEAAVVGRPDDTTGEAICAFVVLKRARPTDDEAAQIANELRNWVAKEIGPIAKPKDIRFGDNLPKTRSGKIMRRLLRSLAKNEEITQDTSTLENPAILEQLRQAK
>NZ_CP010516.1|WP_053822143.1|2221529_2223575_-|VC_2705-family-sodium/solute-symporter
MAQSRFRRRLLLYYGLFTLGLFGFIGMMGLLERSNADALWLGYVFLFITIAIYACIGLICRTADLHEYYVAGRRVPAMFNGMAIAADWMSAASFIGLAGILFASGYEGLAYVMGWTGGYCLVAFLLAPYLRKYGGYTIPDFLAARYGNGKPGGNLPVRGIAVLAASLCSFVYLVAQIQGVGLVVTRFIGVDFAVGVFFGLAGILVCSFLGGMRAVTWTQVAQYIVMIVAFLTTVSMIAWKHHGEAVPQLGYGTVLTDVAQRERELLRDPGELAVREHYRQQAIELQERIARLPQSFDEVRDGLNARLLELRARNAPLREIKAVERERADYPQDPAAALQQWTQQREEALARSQPPVPATEPYPSPSEAERKTERLNFVLLTFCLMLGTASLPHILTRLYTTPSVKESRNSVAWAVFFIALLYVSAPTLAALVKYQFLHHLVGTPYADLPAWVMQWRRIDPPVFGIRDVNGDGIVQWAEVMIQPDMIVLAAPEIAGLPYVISGLVAAGALAAALSTADGLLLTIANALSHDVFYHMVDRGASQQRRVTTAKILLLGVALFAAYVTSLRPGNILFLVGAAFSLAASSFFPVLVLAIFWKRTTAAGAFAGMLAGLSVSIYYIFVNYPFFTRMTGIFGDRWFGVDPIASGAFGVPAGFAVAIAVSLLTRRNAPVIDRLVTYLRKG
>NZ_CP010516.1|WP_053822142.1|2220360_2221533_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MDKIPMRARFEDGAGGARLLLWLGIGAIAAFLLWSAFASLDEVAVGEGKVTPASKGQIIQSLEGGILAELAVREGDVVEAGQQLATLDPVQARSSMEETLERIAALQARAARLHAEMNDAESVNFPAELARDTAVVERERQLFVANRRAFRENLANLRQQLRLAEQELQIALPLLRTGATNEVEILRLRQKVAEFATKLDSTQSEYYVALKADYAKTMADLGPLLKVREGRADQLRRTAITSPARGIVKDIRVSTIGGVITPGGVLMEIVPLGDQLLIEARLSPRDIAFIHPNQEATVKITAFEPSIYGTLPARVDRISPDTIEDQVDRRIYYYRVYVLTQHAFLETKDGKRHPILPGMVATAEIRTGRRTVMDYLVKPLNRAAEALRER
>NZ_CP010516.1|WP_082371503.1|2218001_2220356_+|type-I-secretion-system-permease/ATPase
MNDPTPLSALAQAAQTSPSPPSPPSSPSSPTSPPSPTPSPRQADAEAEASLQPWIDAMLLAARQLNAPASPEQLRNAAAWAARGQPQREAAVVELAASAGLSAQFVDLPPASLSPVMLPVLVPLGQGTTPTVGMVIAVVNGVATLLLPMDGKPVERSLTLDALAREASGRPLLVQARAARRGDRLDAYLRAAPDSWLTGIFTTHWRTMLDLGLGSLFGNLLAVGTSLFAMQVWDRVVPARSLHTLWVLASGVALALALELLIRTARVSITDHFGKRVDIKLSAMFFARVLDIRNDARPRSPGTLIAQLRDLEQLRELLTSSTLGVLIDLPFVAAFLFIIWVLGGWLVAIPLAAIPLLILPGLLAQIPLARLSREGMAEAALRNAILMESIYRAEDIKSLQAEPRFRGLWDHANHVNGEIGLKQRFIAGLLVNVSQTVQQVAYVGVVIAGVYGILDGNLSFGAVLACSILTSRTIAPLAQIPAVLGRIQNARVGKKALDELLRLPVDHDPDKDAYHKPLLRGGYRFENVAFGFDPQEKPVLTIPQLRIAPGERIAILGRVGAGKSTLLRLAGGLAAPTHGRIVLDDTPMALIDVADIRRDIGCVLQESSPFYGTLRENLLIANPLASDEQLLRALRLACADQLLLNQPHGLDLRIRENGIGLSGGQKQVLVLARTFLRDPQVLLLDEPTASLDEGTELAVIERMRQWMGRRTLIVATHRYPVLSLVDRIIVVERGRIVRDGPKDEVLAQLKRTAPPRSAASAQPPTQPSAQPSSPAPAQTAPAAE
>NZ_CP010516.1|WP_053822140.1|2216524_2218009_+|TolC-family-protein
MALLANGARTRQRPLLSRLPAGYTLRTAPPPATLSVLAALAVLAVPCAGPASAAPYTAAAAASASAATAPASPDRMPGPSTPQRIALDGLTLRNAVGIAIARHPDISRANAVVTQNLSEISVAKAAWYPKIEYGVQPGYGGSFGSGGNDLGSRASVGASQLLYDFGRTRSKISAADANLGKSQHQLADTVETVAANTADTFVELAASQAVIAAAQRQVESMNETRARIGERVRAGLSVSSDRDLAEVATLRASAEVLKARNRFDVAATRLAELIGARPRQVADLANTGGVIERITRDGGGGRDDQIDDTPSVLAARAAVDAAAANVDLAKAERYPSVSVGVSRSLSTGRANANDDTWVGLSIRGDFSLGRLAQHRIAAAQAQERAAADALENQRLRTRTALYAAQTEAEGAAARLASYRNVIELSRSSRNLYWQEYMLNKRSLTEVITRDREIFLAEEEWINAMADGIRARIKAYAAVGKFVELLRQQEGARDE
>NZ_CP010516.1|WP_053822139.1|2209334_2216270_+|Ig-like-domain-repeat-protein
MASSAVLQNHIDVAVPAGTSTVAAPEGAANFLVAGNKDNVANYAREGNDLLIEFKDGQTLRIQGFFANGVNFNNLVFVEGDSRWLATFDQALMASGDNVLESAVVYEPIADGSAALLGILGLAAGAGVIAAAAGGGGGGGGGDSRAAPARPTVSLLDDQAPGTGTIANGSATNDATPTLQGTGAVPNGRIQISIDGQPPVTVNADASGNWTYTPPALPSGQHRIVVTQSGSDGKTSEPTVIDVAIDTTAPATPTLNPSNGATLSGTAEAGSTVGIDLNGDGAPDATVIADGNGNWTYTPTSPLPDGTTVTVVATDPAGNTSEPATTTVDGQPPATPTVNPTNGTTLSGTAEAGSTVGIDLNGDGAPDATVTADGGGNWTYTPTSPLPDGTTVTVTATDPAGNTSGPATTTVDAAAPAAPAISGVTDDMDPVSGPLTSGGSTNDTTPTIAGTAEANSTVQIFNGTTLLGTVVADGSGNWTFSPTTPLADGTYSLTATATDAVGNVSGPGTAFVITVDTAAPAAPAITQATGTTLAGTAEAGSIIAIDLNGDGAPDATVTADGGGNWTYTPATPLADGTTVSVTAADAAGNSSGPVTATIDSMAPTAPAIAGVTDDMDPVSGPVTSGGSTNDATPTIAGTAEANSTVQIFNGTTLLGTVVADGSGNWTFTPTAPLADGSYSLTATATDAAGNTSPASTAFDLTIDTAPPAVPVIVQANGNTIAGTADANSTIAIDTNGDGTPDATVTADGAGNWTYTPATPLADGATVTVTATDPAGNASAPATATVDAAAPAAPTIAPTNGTVLQGTAEADSTVNIDTNGDGTADTTVTAHGAGNWTYTPSTPLPDGTVVEVTATDAAGNVSPPATATVDAAAPAAPVITTVVDDVDPVSAPLTSGDSTNDATPTIAGTAEANSTVQIFNGTTLLGTATADGSGNWTFSPTTPLADGSYSLTAVATDAAGNSGPASAAFGFTVDTAAPAVPVIAQANGTTITGTAEADSIIAIDTNGDGTADGTVTADGDGNWSFTPAAPLADGTVVSVTATDAAGNASGPATAAVDALPPAAPTIAPTNGTVLTGTAEANSTVNIDTNGDGTPDATVTADGAGNWTHTPATPLPDGTVVAVTATDAAGNTSAPATATVDAAAPAVPTIAPTNGTVLEGTAEADSIVGIDTDGDGTPDATVTADGAGNWTYTPATPLADGTVVSVTATDAAGNVSPPATATVDAAAPAAPAIATVVDDADPVSAPLTSGDSTNDTTPTISGTAEANSTVQIFNGSTLLGTASADGSGNWTFSPTTPLADGPYSLTVTATDAAGNTSPASGAFDFTVDTAPPSTPVITQANGGTIAGTAEANSTVAIDTNGDGTPDVTVTADASGNWTHAPTTPIADGTTISVTAADAAGNVSAPATIAIDSVAPAAPTIAPTNGTLLQGTAEANSTVNIDTDGDGTPDATVTADGAGNWTYTPATPLADGTVVNVTATDAAGNISPPASATVDAVAPGTPTIQPTDGTLLQGTADANSTVDIDTNGDGTPDATVTADGTGNWTYTPATPLADGTVVNVTARDAAGNVSAPATATVDALPPAAPTIEPTNGTVLAGTAEANSTVEIDTNGDGTPDATVTADGAGNWSHTPATPLPDGTVVSVTATDATGNTSAPATATVDALPPAAPVIAPTNGTVIAGTAEANSTIEIDTNGDGTPEATVTADGAGNWSYTPATPLPDGTVVSATATDAAGNTGAPGSATVDAVVPAVPAIASVTDDVDPVSGALTSGDTTNDGTPTIAGTAEANSTVRIFNGTMLIGTTTADGTGNWSFTPTAPLADGAYALTVTATDAAGNASPASAAFNLTVDTAAPAATVAITGVTDDTGTAGDWITGDTTPTFSGTLSAPLAAGDRVEVSYDGGNTWTQATVNGTSWSWAAANHQFADGNHSVTVRVIDAAGNLGTTDTQAFTISTNVAPEVSAQESGGLLGIVDANVLGLIDLSSQQVFGASDYNNNIQQVVLRYGGLLGLPLQRLGYNADLAAELGINVVPLHDPGILGVIAASSTLTITSVGGGPIDTLRLNELLGSVTIEGGLLGVSLDVLSNFTITATDTTGLTDTANATQLASAEVLAGLLGSSQSSAIIEGTASADTVDGTSGSDRLYGYAGDDTLNGGDGNDLLRGGAGNDTLNGGNGNDLLIGGAGNDTMTGGAGGDVFLYEVTANDGTGGNGSDVITDFTVGTAPGQAGSDVIDLSSLLVGYTADGDGPAHYVNGAATIDAGDNIGDFLSVTNDGANTVISIDRDGGGTAFGSETLITLNNVNTDLETLLANRQVLV
>NZ_CP010516.1|WP_053822138.1|2208074_2209040_+|helix-turn-helix-transcriptional-regulator
MAQTRIGTDAIVASSVAQAQDWLGRHYPGITIEADGGEPRLEIQIDYLDGMAVHTLATDTPLCLRLPCQHDGYLLYTQADGQLSLATEQDGLRPLPAGTAVADARRVTAWGFGPGRYEAILIDAASVHGRLSQSIERPVMHRVKFAPPEGSVPSGVRFAGELVRAAGRYSKADGGPQAIAPDIVQSLQDAVIFAMLKEIPHNYSVYLARRHAGPSPRHVRRAIEYIHANARAALGLADIALAARVSIRTLQAGFARFKGFTPMGYVKRVRLEGVHADLRTAGAEQSIADIARRWGFSHLGQFARDYRMAFGETPSQTRRGD
>NZ_CP010516.1|WP_053822146.1|2229682_2230519_+|glutamate-racemase
MSPSPIGIFDSGLGGLSVLREVRALLPHETLLYLADSRYAPYGEKPQGFVQARTLQACEWLAAQGCKALVVACNTATAHGIQALRERLPLPIVGVEPGLKPAVAASRSKVVGVLATANTLASDKFARLLHSLQDQCRFVCQPGGGLVARIEQGDIDGPLVRERLQTCLAPMLEAGADTLVLGCTHYPFLSETVRELIGERMTLIDTGVAVARQLQRKLAEHGLAADAGSGVDAGASPIAVARYCTTSDAEHLRRMARALLHVDAAAETVVIEPAPITP
>NZ_CP010516.1|WP_053822147.1|2230607_2232908_-|AAA-family-ATPase
MDFTRSIDEDRPALLRAAPGAGATTALDWMCAQFALRVVCALGPRFNLRSNINDVLTVSAQELVWPYGVVMRVQRFLAARCADMPAWRGAARLTPEEFLERHGQWNSAFDEGALFYYLDEYVKHHAKDMFTVFEVSAAALAARLDGERVLLVRNIDMLSHVLDLPDHERKLLLFAALAKYKRDLRAVMVDCKVAHSQEAFQILAGLTGATAAQVAASLRPGSRLETLNLIEQPLPENSVTDLGDLMRLSDRLLHVLLGNYADEAEMMAVFTRPAAPPTLSSTDYPHVESDARYLTALLANATRQHAEGVNVLIYGPPGTGKTEFARLLAREAGCELYEVDCLDRDGNSLSGKDRYRSLQVSQAFLRGRANTALLFDEVEDVFPGSARELMSLFGQEDTRGSVNGKAWVNQTLERNPVPVIWISNSIRQIDPAYLRRFHFHLELRIPPPQVRENIIRKYLGGLAVSDAFIASLAARRTLTPAQVQSAARFVQLAQPGIGEPVETLILRQLEHADRAMGLRPEAETRPVVTHYRLDRLNLETRYRVERIIRALQARRRGTLCFYGPPGTGKTALAEHIAAALELPLMMRRASDLMSKYVGETEQQIAAMFARAEEDGAVLLLDEADSFMQSRQQAVRNYEVSEVNEMLQGMERFNGIFVCTTNLFDRLDEAALRRFSFKIRFMPLLPAQRESMFVDEALDGDASALDDAMRRELAGLDGLTPGDFATVKRQCALLGEALTPDEFLAQLRQEHAVKPEVRERRQVGFVR
>NZ_CP010516.1|WP_053822148.1|2233497_2234160_+|energy-transducer-TonB
MFDQRFLKITLAVLLFHAGLLYLIQSGLARKMTEAVIAPEIIARIIPLEPPQQPAPEPPKPQPKPETPPKQVKVTKPTPQPKPQPKPEPRIEPTPALPPTPTAVEAPPHRRPARSPPPPEPAPVATGPRAVGIGEIQCTPPQPTYPSQSRRMGETGKTVVRLTTDDTGKVVKTAVVSSSGSSRLDQAAIDAVQRMRCKPYVENGRAIAVTAQQPIAFELN
>NZ_CP010516.1|WP_023263789.1|2234206_2234935_+|MotA/TolQ/ExbB-proton-channel-family-protein
MQDLGLSHLWAQGDFVMRATAIILLVMSLASWIVILTKAWDLVRLKKMAQGAEKRFWHSDDFDHALETLGSSESNPFRTLALTGKEAAQHHRASQPQLHDVMDISDWLTRSLKSAIDDAVSRMQSGLAILASVGSTAPFVGLFGTVWGIYHALIGIGASGVPTIDKVAGPVGEALIMTAFGLAVAIPAVLGYNALTRGNKAVISKLNRFAHDLHAYFVTGARVRPTGARTADDNAVRLAVKN
>NZ_CP010516.1|WP_006579474.1|2234973_2235387_+|biopolymer-transporter-ExbD
MAFGTLDDDDDAVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRATNQPNDPKPQNINLSIDAAGKVFWNQQEIDDATLQNNIAQAAQQQPQPELHLRADRDVRYERVAEVMAAAQHGGLGKIGFITEPKQ
>NZ_CP010516.1|WP_053822149.1|2235625_2235970_+|hemin-uptake-protein-HemP
MSTLALPLTQPREVTRRRLSLRRVVVNQDPAPNARREAAAPSAMATVKSAVARLEALVRDNRSANAAAQAAPAQTAEAVPLEALMRGATTLPILHNGEVYTLRKTRYGKLILTK
>NZ_CP010516.1|WP_053822150.1|2236096_2236504_-|heme-binding-protein
MQQKSVLTAEDVKKVMAAAEAEAKAHHWAVSIAIVDDGGHLLALQRLDGAAPISAYIATEKARTSALGRRESKIYEDMINNGRNSFMTAPVLQGMLEGGVPIIAGDQVVGAVGVSGVKSSEDAQIGRAGIAALGL
>NZ_CP010516.1|WP_053822151.1|2237324_2238425_-|putative-sulfate-exporter-family-transporter
MPTTSIPAAAPAAAPAPSIPWRYRLLTLAPLGAIAWLALILSGLPALSQLGVSPLMLAMCAGMVACNTLPRHWLAPLAPGMQLARQTLLRLGVALYGLRLTFGSIEALGVGGVVAPLLMLAATLCVGVWIGTRWLGLTRREAVVVSAGSAVCGAAAAIAVASIARTDDRQTAVAVATVVLFGTVGMLLYPYLYELVTNVWHWQVGERAFGIYTGATLHEVAQVIVAGKAVGETAGDAAVLAKMVRVLALGPLLLVLALWPRADDRAQGTDAGRRGIDWARIRAAVPWFALGFVAVLAINSFGLVPGEWKPALVAFDNWLLACAMLAIGLHTRIGDLLRAGRKPMLLAALLFVFLVGAGALLCAVLL
>NZ_CP010516.1|WP_053822152.1|2238527_2239457_+|LysR-family-transcriptional-regulator
MQHRPLRLTLRQLAVFVAVVQHGSTTAAAEAVAMSQSAVSAALADLERALDRRLFDRVAKRLTINETGRQFFPRALSLLDQAHELERFAADAGVQLRIAASNTIGSYLLPALLTGFRQAQQQPCALDLRIGNTHDVLQDLLRLDADIGLIEGTCHEPELSSVHWCDDEMVVVVGAGHPLARADGDLDALREADWLVRERGSGTREIVEQRLAPLLGPLRFALELGNAEAIKRAVMSGFGVSCLSLHVVRDELERGTLVALRRGLPRLVRPWHLVVHQDKYPTQGLLAFTEYLRQTAPQLELEELEQQEG
>NZ_CP010516.1|WP_082371504.1|2239493_2240726_-|Kef-family-K(+)-transporter
MHHATPLISTIVGGIVLAFVLGALAGRLRLPPLIGYLCAGVVVGPHTPGYTADQALAPELAELGVILLMFGVGLHFSIRDLMAVRKIAIPGAVAQIGIATLLGMGVAWGFGWSWGQGLVYGLALSVASTVVLLKALQDRDLVDSEQGRIAVGWLVVEDLAMVLALVLLPALSGLLVPAGSGGEAPDASVTDILLTVSLTLGKVAAFVAVMLVIGRRFIPWMLERIVWTGSRELFRLGVLATALGVAFGAYSLFGVSFALGAFFAGMVLAESEFSHRAAEESLPLRDAFAVLFFVSVGMLFDPMVLVRDPWGVLATVSIIVVGKSLAALGIVRMFGYSNRTGMTIAASLAQIGEFSFILASLGVFLQILPERAQSLILAGALLSIVLNPLLFRWLDRYVARQSEAGEAQAA

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Crispr_ID: NZ_CP010516_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010516_2

2544907-2545010

Orphan

Consensus_repeat	Method
CGCCAGCCGTCCCCGATTGTGTTCTCCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010516_2

>merge|NZ_CP010516|2|2544907-2545010|CRISPRCasFinder
CGCCAGCCGTCCCCGATTGTGTTCTCCCTCCCTTCTGTACATCGCGCACGCGGGAGAGGGGAGAAAACCAGCGCCGCCAGCCGTCCCCGATTGTGTTCTCCCTC

>NZ_CP010516|2|2|2544907-2545010|CRISPRCasFinder
CGCCAGCCGTCCCCGATTGTGTTCTCCCTC	CCTTCTGTACATCGCGCACGCGGGAGAGGGGAGAAAACCAGCGC
CGCCAGCCGTCCCCGATTGTGTTCTCCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010516.1\|WP_082371525.1\|2533054_2534440_-\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|234714
NZ_CP010516.1\|WP_053822325.1\|2547306_2548827_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|182376
NZ_CP010516.1\|WP_144425825.1\|2542925_2544797_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NZ_CP010516.1\|WP_082371528.1\|2551757_2552399_+\|chalcone-isomerase-family-protein	unknown	unknown	gnl\|CDD\|374318
NZ_CP010516.1\|WP_053822318.1\|2536689_2537805_+\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|179349
NZ_CP010516.1\|WP_053823177.1\|2554289_2555186_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP010516.1\|WP_053823176.1\|2553738_2554197_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NZ_CP010516.1\|WP_053822317.1\|2535403_2536024_+\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
NZ_CP010516.1\|WP_053822319.1\|2537985_2538795_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NZ_CP010516.1\|WP_053822324.1\|2546114_2547134_+\|bile-acid:sodium-symporter	unknown	unknown	gnl\|CDD\|372642
NZ_CP010516.1\|WP_053822327.1\|2549349_2550558_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NZ_CP010516.1\|WP_053822328.1\|2550628_2551522_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP010516.1\|WP_053822323.1\|2545057_2545951_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP010516.1\|WP_053822321.1\|2539880_2541608_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010516.1\|WP_053822329.1\|2552511_2553483_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	unknown	unknown	gnl\|CDD\|270295
NZ_CP010516.1\|WP_053822320.1\|2539139_2539805_+\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
NZ_CP010516.1\|WP_053822322.1\|2541957_2542716_+\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|187629
NZ_CP010516.1\|WP_053822326.1\|2548820_2549333_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|223873
NZ_CP010516.1\|WP_006579104.1\|2537785_2537974_+\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|225391
NZ_CP010516.1\|WP_053823174.1\|2536039_2536468_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|376792

Protein	Function_ID	Function_description	E-value
NZ_CP010516.1\|WP_082371525.1\|2533054_2534440_-\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	0
NZ_CP010516.1\|WP_053822325.1\|2547306_2548827_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	1.51113e-84
NZ_CP010516.1\|WP_144425825.1\|2542925_2544797_+\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP010516.1\|WP_082371528.1\|2551757_2552399_+\|chalcone-isomerase-family-protein	gnl\|CDD\|374318	pfam16036, Chalcone_3, Chalcone isomerase-like. Chalcone_3 is a family of largely bacterial members.	1.37644e-68
NZ_CP010516.1\|WP_053822318.1\|2536689_2537805_+\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|179349	PRK01906, PRK01906, tetraacyldisaccharide 4'-kinase; Provisional.	0
NZ_CP010516.1\|WP_053823177.1\|2554289_2555186_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	1.0452e-164
NZ_CP010516.1\|WP_053822322.1\|2541957_2542716_+\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|187629	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs. HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	6.76668e-132
NZ_CP010516.1\|WP_053823176.1\|2553738_2554197_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	2.38132e-39
NZ_CP010516.1\|WP_053822317.1\|2535403_2536024_+\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	5.79048e-46
NZ_CP010516.1\|WP_053822327.1\|2549349_2550558_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP010516.1\|WP_053822328.1\|2550628_2551522_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.67215e-41
NZ_CP010516.1\|WP_053822323.1\|2545057_2545951_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.24259e-67
NZ_CP010516.1\|WP_053822319.1\|2537985_2538795_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	2.6337e-138
NZ_CP010516.1\|WP_053822329.1\|2552511_2553483_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	gnl\|CDD\|270295	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	5.53195e-154
NZ_CP010516.1\|WP_053822320.1\|2539139_2539805_+\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	1.64709e-139
NZ_CP010516.1\|WP_053822324.1\|2546114_2547134_+\|bile-acid:sodium-symporter	gnl\|CDD\|372642	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137). These family members are 7TM putative membrane transporter proteins. The family is similar to the SBF family of bile-acid symporters, pfam01758.	4.23632e-119
NZ_CP010516.1\|WP_053822326.1\|2548820_2549333_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	9.88081e-52
NZ_CP010516.1\|WP_006579104.1\|2537785_2537974_+\|Trm112-family-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	1.58696e-25
NZ_CP010516.1\|WP_053823174.1\|2536039_2536468_+\|biopolymer-transporter-ExbD	gnl\|CDD\|376792	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.	4.93652e-34

>NZ_CP010516.1|WP_144425825.1|2542925_2544797_+|gamma-glutamyltransferase
MATDGQAGRHAGRAAAGGLRGPAGRQGRRHHGGAGPGHPRRQHPAPGTTALPPAPEGASGWTDKPGWTASSFMVAAANPLATQAGYDMLKAGGTAIDAAIATQMVLNLVEPNSSGIGGGAFLMHFDGKQVQAYDGRETAPAAATERLFYGPDGKVMPFRQGLVGGRSVGAPGVLRMLELAHRQHGKLPWRRLFEPAIRLAEQGFAISPRLATIIAQDQDLMKDPTARAYFYNADGTPKAAGTVLRNPELAAVLRSVAARGADAFYRGDVARDIAAKVRSHPTNPGLLTARDIADYRPKVRQPICTDYRRWTVCGMPPPSSGGIAVAQMLGILQALPPARQIGAARPQRNDVGLEPSVEGAHLFAEAGRLAYADRNQYVADTDFVPLPGGDWRSLVDPRYLASRAALIGERSMGKASAGTPAGATVALGRDRAPEFPSTSHISVVDRYGNALSMTTTIEDQFGSRQMVRGFLLNNQLTDFSFVAEEDGKPVANRVQPGKRPRSSMAPTLVFDRQTRELVMTAGSPGGSAIINYVAKTLVGTLDWDLNVQQAISLPNVGSRNGPTELEKGRVSDALVEGLKARGHDVRVMDQTSGLQGIMRVRVNGKPMWFGGADPRREGVAMGD
>NZ_CP010516.1|WP_053822322.1|2541957_2542716_+|3-hydroxyacyl-CoA-dehydrogenase
MQIRDNVFIVTGGASGLGAGTARMLAEQGGKVVIADLNEAAGTALAEELGGRFVRCDVTSEADGQAVVDAAVGMGRLAGLINCAGIATANKTVGKNGPHPLDAFEKTIRINLIGTFNMIRLAAAAMVQNTPDDGGERGIIVNTASVAAFDGQIGQAAYAASKGGVVGMTLAVARDLSRDGVRCMTIAPGIFETPMLLGMPQEVQDALGKMVPFPPRLGRPAEYAQLVQAIIGNTMLNGEVIRLDGAIRMQPK
>NZ_CP010516.1|WP_053822321.1|2539880_2541608_-|hypothetical-protein
MHSTPGAGAIRLDLAEPQGTFGAVRQFIRDLRVGRPTLRLDTTGISLMSSAVQEAEPLFEAADAMSPDLVQASDVLPAGDAVLGVVDLVRTAAGKVRTAQQLRASEPGYRRAVAALARTRLPEHVERRKTALKAARHWIGACLSTPARHDGTPAPALAAHRLPRHGAAYLPDTFRQALTAGNGDAVALGQAAMDVIDRELALIDGQRDAMLRQHGADLLGHDAVTRNDRRATRRLRGSAIACLRDSSLQALRVGYETSPIPASGWEAPLDLGLIPGDMLSLGLGAAIGLAQVGCGIGELAEARRHDATLRKVDAAIRDNLRRLSADPVRRRRLQSPAATEALHWFARGQRRWRERARGLARRAAVRIAYGVGTVLLSGAGMATMVVAGTAALATPAAPLLVALGGVLGGAWFLFTLIRIAMRFARRRADMWERERLAHAIRSGAARGLCADTLAQCSLAQLEALRHESQALSGNRHWQAAVLARRLLIDDPAGNTAGNSAGKIAGKAARLEASALLQALGMSRMSTTLLKHAGFELAYRTIFHHLHGDGAQAAWHDGTFHRVQASGVAGVPAPGG
>NZ_CP010516.1|WP_053822320.1|2539139_2539805_+|adenylate-kinase
MRLILLGAPGAGKGTQAKFICEKFGIPQISTGDMLRAAVKAGTALGIEAKKVMDAGGLVSDDIIIGLVKDRLKQDDCRNGYLFDGFPRTIPQAEAMKEAGVPIDYVLEIDVPFDAIIERMSGRRVHAASGRTYHLKYNPPKTPGVDDETGEPLIQRDDDKEETVRKRLDVYAQQTRPLVDYYSDWAAKGAPGASVAPPQYRKISGVGSVDEITARVFEALK
>NZ_CP010516.1|WP_053822319.1|2537985_2538795_+|3-deoxy-manno-octulosonate-cytidylyltransferase
MSLADFTVVIPARLASTRLPNKPLADIAGKPMIVRVAERARTSSARRTVVATDADSVRAACAEHGIEALLTRTDHATGTDRLAEVATLLSLDDDAIVVNVQGDEPLIAPALIDAVAGHLAAHPDCAIATAAHPLHEIGEVFNPNVVKVVCDSAGRALYFSRAPIPWARDAWSGVPSAPAASAQVPLPDMPVLRHIGLYAYRAGFLRRFPALAAAPVEQTEALEQLRAMWHGERIAVLATDAAPAPGVDTPADLERVRALWSETSAAIGR
>NZ_CP010516.1|WP_006579104.1|2537785_2537974_+|Trm112-family-protein
MDNRLLEILVCPLCKGKLEYDRAAQELICHADKLAYPIRDGIPVMLADEARQSVPGRAIDPT
>NZ_CP010516.1|WP_053822318.1|2536689_2537805_+|tetraacyldisaccharide-4'-kinase
MPAARHLLSDFVTRQWQRRGWFAWLMLPFAGVFAAISALRRLAYRRGWFKSTRLPMPVVVVGNVTVGGTGKTPAVIALADALCEAGLRPGVVSRGYGVKLERPRRVKATSKAEDVGDEPLLIARSTDVPVWVFPDRVACAQAMLVSHPGINVLLLDDGLQHYRLQRDFEIVMFDGRMGGNGWLLPAGPLREPLSRRRDATLINDPYFRATPDRPEVYGMRLELEQAWQLADPTMVRPLSTFAGRRVLAAAGIGNPERFFASLRGAGLQPDTLPLPDHYDFAEDPFVDHPAAQAAEAILITEKDAVKCDRLREPLDPRIWVVPTRPVIDPGLIDRIRRTVIARCQAAPTAATGAAAAAASHTKEHQDGQPAA
>NZ_CP010516.1|WP_053823174.1|2536039_2536468_+|biopolymer-transporter-ExbD
MRFRTRARRDEPEINLIPLIDVLLVILIFLMITTTYSRYTELRIQLPTAEAQSSQQRPREIVVSVSASGEYAIDKERVGVRDVAGLTERLRALAGTAAAQAPVLIVSADAQASHQSVVNVMEAARIAGLSRLTFATQSGGTR
>NZ_CP010516.1|WP_053822317.1|2535403_2536024_+|MotA/TolQ/ExbB-proton-channel-family-protein
MFSIIEAAGWPIWPLLVASVIALALIVERSLSLKRSKVLPARLYDQALTVARQRRATPDVVDSLERDSPLGRVLAAGLRHVIAQPDTSRDAAKDAVEEAGRAVAHELERYLNALGTIASVAPLMGLLGTVIGMIEIFGSQGGTGANPEQLAHGISVALYNTAFGLMVAIPALIFWRYFRRRVDDYVAELESRAATFLDAILPQRRA
>NZ_CP010516.1|WP_082371525.1|2533054_2534440_-|exodeoxyribonuclease-VII-large-subunit
MSEPFSFPPSPVTRTAPGGREVIPVGELNHAIASVLERNFPLAWVRGEISNLTRASSGHWYFSLKDARAQIRCVMFRGRNQHVDFPVREGEAVEVRALVSMYEARGEVQLNVEAMRRAGVGNLYEAFLRLKDKLARDGLFDPARKRPIPSHPHTIGVVTSLQAAALRDVLTTLRRRAPHIQVLVYPVPVQGAGAADKIAAMLDTVSARAECDVVILCRGGGSIEDLWSFNEEVVAHAVARCALPVVCGVGHETDFTIADFVADVRAPTPTGAAELVSPDRAHLLAQAARARDALGQCMRRQLERRAQHLDWLARRVRSPQAQLQERRGQLDNLARHLRAAWRDNLVARRHRLQLWSMRWRAQRPDASAGQAELARLVTRMHAASERQHERAAQRLHRAAGALELLAPQRTLERGYAVLLDPRGKALRAPSELRAGGRLEVHLAEGVADIGIASVQAKLLDL
>NZ_CP010516.1|WP_053822323.1|2545057_2545951_-|LysR-family-transcriptional-regulator
MNYTLRQLRVFLAVASHGSFSRAADAVGLTQPAVSRGVAELEEALGLRLLDRTTREVVLTDAGQALVPALERLLGQLDDTLEETRQLGERYRGRVVIASAPTISARLMPLYVAACARQYPEVRLSVRDNVQADGLEQIRAGAVDFGVLIDPLASEGLETVPLGTDPFCFVCRDDDPLAKRDTVSWSALDGVPLVLLDFASGSRPLIDRVFAMHGVTPRVVQELGHSASVFGMVQAGIGASVLPSFSLPLPAASNLVWRPLVPQEQRRIVMVRREDRSLSPAAAAVWEMVRTMPIPAA
>NZ_CP010516.1|WP_053822324.1|2546114_2547134_+|bile-acid:sodium-symporter
MSFLLNPFKKLYDLIDGFVLIMLAAIAVALAAPELGTGDGPLHLGLVTSLGVALVFFLHGAALSRDKLVAGAKHWRLHTFVQVFTYVVFPLIGAALMFALHDQLPADLLLGVFFLCALPSTVSSSVAMTSMARGNVPGAIFNATISGLIGMALTPLLMGLVISASGASMPLGKALTGVALQLLLPFALGQLARPVIGAWLGRHKAITSKIDRGVIVLIVYSSFCDATAEGLWHQYSWQTIASVMALAAVLLFAILATTTFVARRLGFAIEDEITAVFCGSKKSLANGIPMAKILFAGHPALGLLVLPLMVYHQLQLIVCSVMASRYANREQIEGAVARA
>NZ_CP010516.1|WP_053822325.1|2547306_2548827_-|N-acetylmuramoyl-L-alanine-amidase
MLIKRLATDRPDELLLARRKWLAQCLKAGAGTVVLTLAGPQIAAGAGIVAVRVWPAEDYTRVTIESDERLAAVHTMVRNPDRLVVDIDGLDLSPTLRELVAKITPNDPYIQSVRVGQNRPRVVRLVFDLKEDISPQVFTLGPIGQYRNRLVFDLYPVNPPDPLWKLVRETEDKQRRFASTPATDSADSVAGAPPSSEEDAIAALVRQFEDQAKTPATPPLPANPPVAATRPKPPAGSPATQPPQPQAPLAQDKPGKNDPADDPAPSRFKMRRLLTVAIDPGHGGEDPGAIGAAGSREKDVVLQIAKRLRAKIDAQPNMRAMMTRDADFFVPLNVRVQKARRVKADLFVSIHADAFVKPEARGASVFALSERGASSSAARWLANKENAADLIGGANMNNKDAQVARVLLDLSTTAQINDSLRVGKAVLSEIGGMHQLHKAHVEQAGFAVLKAPDIPSILIETAFISNPEEERKLNDEAHQEQLANAILRGIRGYFARNPPLSRSPSV
>NZ_CP010516.1|WP_053822326.1|2548820_2549333_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MPLLEERTVILPDEAATGRLGAALAGAVRALPPQTVHVQLSGDLGAGKTTLSRAVLRALGHAGKVRSPTYTLCEPYQVARADGSPLTVYHFDLYRFADPEEWLDAGFRDCFAEPAFNLVEWPEKAAALLGEPDLHLLLQSDTSPSDEAADRRVAILRAYTPTGLLLLHAC
>NZ_CP010516.1|WP_053822327.1|2549349_2550558_+|tRNA-epoxyqueuosine(34)-reductase-QueG
MIDRAAQAPDAVLSGTPAAQHATGADPHALVAQIRAWGAALGFDDVRVADVDLSHAEAGLLEWLAQGCHGDMDYMANHGLKRARPAELVPGTVRAIVARMPYLPASTDAEDDDDGGDWRAREFARLAQVEAGGTAATISLYARGRDYHKVLRTRLQQLAGRIEGAIGPFGYRVFTDSAPVMEVALAGQGGLGWRGKHTLLLDRDGGSMFFLGEILVDLPLPVDPPASAHCGQCRRCIDICPTQAIVGPYRLDARRCISYLTIEHKGAIPEELRAPMGNRVYGCDDCQLACPWNKFAHRATLPDFAVRNGFDAPDMVELFGWSEEEFNRRLEGSPIRRIGHERWLRNLAVGLGNALRGAGAPAQAERIRAALLARAEHPSALVREHVAWALAQRPQSPQPRPR
>NZ_CP010516.1|WP_053822328.1|2550628_2551522_-|AEC-family-transporter
MSPALLMVPDFSLILIGWLLVRYTSFDRGFWSGVERLVYFVLFPALLLQATNSAVFDFSTTSAMLGLAVLTTVFGMAAGYAVKWVLRPNPVDFASGLQTAFRFNSYIALALASRLGGSEGLAMMAVIVGCVVPMCNVAAVWALARHGEARLWRELARNPLILATAGGLITNLIGLHPPEVLGMTLARLGSASTALGLMTVGAGLQMRGAVGTVGPVAWWTGVKLLAMPAFAWAVGRHLPLSPLQLQIAVLYAAMPTASSAYILAVRMGGNGPMVAAAISAMTVSAIFTAPLWLALVS
>NZ_CP010516.1|WP_082371528.1|2551757_2552399_+|chalcone-isomerase-family-protein
MPAPRHPSARAPLDRTARTARRLRQWLAICCVAVAGALPVAASAIEIEGVRLDEATRLGGKELQLNGAGLRSVFIVKGYVAALYLPEKVRNAAVVLGAKGPKRLQIRPLREVESSTFVKALNEGMRENHNEAQLEKFADRLHQLEQAMNQVGTARKGDVIDFDYTPDSGTVIAVNGTPRGKPIPGEDFYQAVLRIFLGERPVDRDLKRGLLGG
>NZ_CP010516.1|WP_053822329.1|2552511_2553483_+|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE
MQSKHIALALGLAACASLAQAQSNYPSKPIKLIIPFAPGGTTDIVGRGAADQMSKILGQPVVVENRAGGGGSIGADAIAKAAPDGYTIGISTVSTMAVNPACNPKLSYDPIKDFKPITNLANVANVIAVNPNFPAKDYKEFLAALKANPGKYSYASSGTCGFGHMLGEQFKVSTKTFMVHIPYRGAGPALNDVLAGQVPIMVDNLPSSMPHIKAGKLRPIVVAAEKRLDSLPNVPTFGEMGLKEPNDPAWYGLVAPAGTPDDIIKKLNEAAVKALQDKGFRERLIAAGAEPSGNSPAQHAAEIKKEFDKMRNLVKVQNIKLEQ
>NZ_CP010516.1|WP_053823176.1|2553738_2554197_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MLAAPFGRIGVRADAQCIHAIHFLPERFALRGADLPPIRQLAAQLEAYYADPDAPLDVPLAGTGTEFQRRVWQAIRTVRCGRTATYGELAANVGGTARAVGQACGDNPFPLVVPCHRVVGAKGLGGFAHHGEDGFHLEVKRWLLRHERVMLL
>NZ_CP010516.1|WP_053823177.1|2554289_2555186_+|site-specific-tyrosine-recombinase-XerD
MAADLTLVDRFCDALWLEDGLARNTIDAYRRDLALLARWLRGERGVALLAADDGALSGYFAARHPDTRASSANRRLAVFRRFYRWALREHLVQADPCLLLRAAKQPPRFPKTLSEAQVEALLQAPDIDTPLGLRDRTMLELMYASGLRVSELTQMKTVEIGLNEGVARVVSGKGNKERLVPFGAEAGVWLRRYLASARPALLGQRGSDALFVTQRGEAMTRQAFWYLIKRYARQAEIHAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRVLHQQHHPRG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

597923 : 604513

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053821167.1\|597923_598988_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.8e-89	48.9
WP_053821168.1\|598977_599895_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	5.3e-22	32.8
WP_053821169.1\|599905_600784_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.0e-100	59.9
WP_053821170.1\|600780_601368_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.9e-51	57.9
WP_053821171.1\|601472_602888_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.9e-55	30.8
WP_053821172.1\|602889_603720_+	ABC transporter permease	NA	NA	NA	NA
WP_053821173.1\|603724_604513_+	ABC transporter ATP-binding protein	F2Y302	Organic_Lake_phycodnavirus	8.6e-05	28.2

DBSCAN-SWA_2

817309 : 829130

Acidithiobacillus_phage(40.0%)

protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053821288.1\|817309_819193_+\|protease	ATP-dependent zinc metalloprotease FtsH	C7U047	Ostreococcus_tauri_virus	2.1e-105	41.3
WP_028914928.1\|819189_819630_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	4.5e-11	37.9
WP_053821289.1\|819705_820176_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_053821290.1\|820183_821146_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_053821291.1\|821169_822324_+	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	2.1e-28	29.9
WP_170265834.1\|822405_822873_-	lysozyme	K4I410	Acidithiobacillus_phage	1.4e-63	77.6
WP_053821292.1\|822869_823346_-	hypothetical protein	K4ICR8	Acidithiobacillus_phage	2.1e-75	88.0
WP_053821293.1\|823342_823642_-	hypothetical protein	K4I011	Acidithiobacillus_phage	1.5e-23	67.9
WP_053821294.1\|823709_824063_-	DUF2793 domain-containing protein	A0A1X9IAR6	Xanthomonas_phage	6.7e-34	58.5
WP_053821295.1\|824064_826287_-\|tail	phage tail protein	A0A1L2C8W7	Pseudomonas_phage	1.1e-171	44.5
WP_053821296.1\|826283_826508_-	hypothetical protein	NA	NA	NA	NA
WP_053821297.1\|826504_826723_-	hypothetical protein	A0A0S0N2N8	Pseudomonas_phage	2.4e-10	50.0
WP_053821298.1\|826707_827436_-	hypothetical protein	NA	NA	NA	NA
WP_144425749.1\|827457_827694_-	hypothetical protein	NA	NA	NA	NA
WP_144425876.1\|827840_829130_+	recombinase family protein	K4ICM1	Acidithiobacillus_phage	2.9e-135	56.4

DBSCAN-SWA_3

848866 : 857845

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053821314.1\|848866_850240_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	8.3e-72	36.4
WP_082371610.1\|850291_851242_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	6.5e-15	27.6
WP_053821316.1\|851268_852264_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	1.1e-28	32.8
WP_053821317.1\|852495_852882_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_053821318.1\|853228_854527_+	pyrimidine permease	Q9KX94	Enterobacteria_phage	2.8e-146	65.4
WP_053821319.1\|854638_855541_+	cysteine synthase CysM	C3U2M1	Lactococcus_phage	5.7e-53	43.0
WP_053821320.1\|855607_856720_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_053821321.1\|856921_857845_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	2.8e-39	34.0

DBSCAN-SWA_4

1264678 : 1273574

Salmonella_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034021473.1\|1264678_1266268_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	7.1e-67	34.0
WP_158507255.1\|1266264_1266438_-	hypothetical protein	NA	NA	NA	NA
WP_144425772.1\|1266603_1266885_-	hypothetical protein	NA	NA	NA	NA
WP_144425773.1\|1266887_1267370_-	hypothetical protein	NA	NA	NA	NA
WP_053821597.1\|1267581_1267935_-	hypothetical protein	J9RWD8	Pseudomonas_phage	4.1e-31	65.7
WP_144425774.1\|1267970_1268366_-	hypothetical protein	NA	NA	NA	NA
WP_053821598.1\|1268411_1268852_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_082371434.1\|1268955_1269204_+	helix-turn-helix domain-containing protein	D0UIL8	Aggregatibacter_phage	1.6e-10	51.4
WP_082371435.1\|1269856_1271002_+	hypothetical protein	A0A0M4REK7	Salmonella_phage	4.0e-35	45.6
WP_053821600.1\|1271001_1271577_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	1.2e-19	37.2
WP_053821601.1\|1271576_1271894_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	8.2e-15	39.4
WP_053821602.1\|1272586_1272850_-	hypothetical protein	NA	NA	NA	NA
WP_053821603.1\|1272929_1273574_-	SOS response-associated peptidase family protein	C7BGE4	Burkholderia_phage	6.7e-48	47.9

DBSCAN-SWA_5

1527526 : 1597385

Salmonella_phage(25.0%)

integrase,transposase

attL 1551873:1551888|attR 1598228:1598243

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_053821761.1\|1527526_1530526_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_053821762.1\|1530518_1530863_+	hypothetical protein	NA	NA	NA	NA
WP_017514071.1\|1531286_1531751_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_017514072.1\|1531750_1532101_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_034021473.1\|1532132_1533722_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	7.1e-67	34.0
WP_053821763.1\|1534433_1534772_-	copper-binding protein	NA	NA	NA	NA
WP_053821764.1\|1534768_1537939_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_053821765.1\|1537935_1539504_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_082371456.1\|1541437_1541638_-	hypothetical protein	NA	NA	NA	NA
WP_116359815.1\|1542236_1542455_-	hypothetical protein	NA	NA	NA	NA
WP_035862553.1\|1543429_1543732_+	hypothetical protein	NA	NA	NA	NA
WP_144200244.1\|1543911_1544310_+	hypothetical protein	NA	NA	NA	NA
WP_053823083.1\|1544492_1545371_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_082371626.1\|1545706_1546192_+	CzcE family metal-binding protein	NA	NA	NA	NA
WP_053821769.1\|1546321_1546558_+	hypothetical protein	NA	NA	NA	NA
WP_082371457.1\|1546886_1548596_+	phosphoethanolamine--lipid A transferase	NA	NA	NA	NA
WP_082371458.1\|1548603_1549416_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_053823084.1\|1549380_1550646_-	hypothetical protein	NA	NA	NA	NA
WP_082371459.1\|1550821_1551097_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_082371460.1\|1551110_1553552_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	5.1e-88	36.4
1551873:1551888	attL	NA	NA	NA	NA
WP_053823085.1\|1553616_1554033_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_053821772.1\|1554094_1554625_+	c-type cytochrome	NA	NA	NA	NA
WP_082371627.1\|1555245_1555443_+	hypothetical protein	NA	NA	NA	NA
WP_082371461.1\|1555657_1556005_-	CzcE family metal-binding protein	NA	NA	NA	NA
WP_053821774.1\|1556390_1556867_-	cupredoxin family protein	NA	NA	NA	NA
WP_053821775.1\|1556936_1557854_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_053823086.1\|1557861_1558248_-	copper homeostasis periplasmic binding protein CopC	NA	NA	NA	NA
WP_144425887.1\|1558286_1559234_-	copper resistance protein B	NA	NA	NA	NA
WP_053821776.1\|1559632_1561519_-	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_053821777.1\|1561721_1562408_+	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	4.6e-31	34.4
WP_053821778.1\|1562404_1563799_+	heavy metal sensor histidine kinase	A0A1V0SGX0	Hokovirus	5.6e-07	27.7
WP_082371462.1\|1563889_1564957_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_115737200.1\|1565024_1566083_-	porin	NA	NA	NA	NA
WP_053821780.1\|1567016_1567301_-	periplasmic Cu(I)/Cu(II)-binding protein CopK	NA	NA	NA	NA
WP_144200242.1\|1567389_1567776_-	hypothetical protein	NA	NA	NA	NA
WP_082371628.1\|1568014_1568887_-	copper resistance protein B	NA	NA	NA	NA
WP_053821781.1\|1569003_1570941_-	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_062799392.1\|1571206_1571533_+	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_053821782.1\|1571730_1573545_+	glycoside hydrolase family 15 protein	NA	NA	NA	NA
WP_053821783.1\|1573545_1574541_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_144425791.1\|1574562_1575537_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_053821785.1\|1575513_1578480_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.2
WP_053821786.1\|1578482_1579043_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.3e-50	87.9
WP_053821787.1\|1579282_1579825_+	chromate resistance protein ChrB	NA	NA	NA	NA
WP_053821788.1\|1579843_1581487_+	phosphoethanolamine--lipid A transferase MCR-5.1	NA	NA	NA	NA
WP_170265907.1\|1581483_1582719_+	MFS transporter	NA	NA	NA	NA
WP_053821791.1\|1583172_1583526_+	copper-binding protein	NA	NA	NA	NA
WP_179949070.1\|1583928_1584585_-	sterol desaturase family protein	NA	NA	NA	NA
WP_053821792.1\|1584985_1585618_+	cation transporter	NA	NA	NA	NA
WP_170265910.1\|1585696_1588732_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	4.4e-150	43.9
WP_053821794.1\|1588721_1589216_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_062799357.1\|1589343_1590036_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_053821795.1\|1590032_1590458_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_082371466.1\|1591138_1591657_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_165835815.1\|1591547_1592788_-\|transposase	IS3-like element ISRme15 family transposase	Q8W6R2	Burkholderia_virus	2.5e-131	80.2
WP_144425792.1\|1592836_1593154_-	hypothetical protein	NA	NA	NA	NA
WP_053823089.1\|1593571_1595497_+	FTR1 family protein	NA	NA	NA	NA
WP_004635317.1\|1595634_1595949_+	DoxX family membrane protein	NA	NA	NA	NA
WP_004635319.1\|1595879_1597385_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1598228:1598243	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3202885 : 3276099

Acidithiobacillus_phage(36.11%)

head,holin,portal,integrase,capsid,terminase,tail

attL 3196019:3196037|attR 3239535:3239553

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3196019:3196037	attL	NA	NA	NA	NA
WP_053822716.1\|3202885_3204643_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	1.5e-62	30.1
WP_053822717.1\|3204785_3206123_+	MHS family MFS transporter	NA	NA	NA	NA
WP_053822718.1\|3206126_3206897_-	hypothetical protein	NA	NA	NA	NA
WP_053822719.1\|3206899_3207079_-	hypothetical protein	NA	NA	NA	NA
WP_053822720.1\|3207821_3208685_-	DUF3800 domain-containing protein	A0A1W6JTE9	Pseudomonas_phage	1.3e-59	44.4
WP_045785178.1\|3209027_3209390_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_144425850.1\|3209474_3209747_+	hypothetical protein	NA	NA	NA	NA
WP_053822721.1\|3209848_3210475_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_082371568.1\|3210572_3210923_-	glycosyltransferase	NA	NA	NA	NA
WP_080324167.1\|3211127_3212012_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009238667.1\|3212008_3213019_-	2-hydroxyacid dehydrogenase	M1NSB9	Streptococcus_phage	1.3e-16	27.8
WP_009238668.1\|3213042_3213840_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_046983516.1\|3213852_3214713_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020200553.1\|3214715_3215534_-	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.4e-26	37.2
WP_123876282.1\|3217127_3217439_-	hypothetical protein	NA	NA	NA	NA
WP_082371569.1\|3217435_3218335_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	7.6e-50	39.6
WP_186449262.1\|3218748_3219222_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_053822724.1\|3219244_3220363_-	Fic family protein	NA	NA	NA	NA
WP_053822725.1\|3220516_3221128_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_053823232.1\|3221229_3221697_+	hypothetical protein	NA	NA	NA	NA
WP_053822726.1\|3221835_3223395_+	recombinase family protein	E5DV73	Deep-sea_thermophilic_phage	4.2e-11	28.0
WP_053822727.1\|3223391_3224291_+	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_053822728.1\|3224287_3225172_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_081092653.1\|3225253_3226537_+	hypothetical protein	NA	NA	NA	NA
WP_081092646.1\|3226703_3227864_-	DNA modification methylase	NA	NA	NA	NA
WP_053822731.1\|3227806_3229915_-	DUF87 domain-containing protein	NA	NA	NA	NA
WP_053822732.1\|3229926_3231069_-	hypothetical protein	NA	NA	NA	NA
WP_053822733.1\|3231180_3231384_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_053822734.1\|3231428_3233801_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_053822735.1\|3233800_3235198_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_053822736.1\|3235184_3238184_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_053822737.1\|3238190_3238481_-	hypothetical protein	NA	NA	NA	NA
WP_053822738.1\|3238559_3239024_-	lysozyme	K4I410	Acidithiobacillus_phage	2.9e-69	80.7
WP_053822739.1\|3239020_3239497_-	hypothetical protein	K4ICR8	Acidithiobacillus_phage	1.7e-77	90.5
WP_053822740.1\|3240353_3241982_-\|tail	phage tail protein	A0A125SA60	Pseudomonas_phage	6.5e-116	44.9
3239535:3239553	attR	NA	NA	NA	NA
WP_053822741.1\|3242454_3242667_-	hypothetical protein	NA	NA	NA	NA
WP_053822742.1\|3242663_3242894_-	hypothetical protein	A0A0S0N2N8	Pseudomonas_phage	5.5e-13	50.7
WP_053822743.1\|3242903_3243707_-	phage BR0599 family protein	A0A2D2W238	Stenotrophomonas_phage	1.7e-56	41.9
WP_144425851.1\|3243703_3245386_-	hypothetical protein	A0A076FRD9	Pseudomonas_phage	6.4e-66	31.7
WP_053822745.1\|3245386_3245617_-	hypothetical protein	A0A172PZY6	Pseudomonas_phage	8.3e-09	40.8
WP_053822746.1\|3245613_3246528_-	hypothetical protein	NA	NA	NA	NA
WP_053822747.1\|3246535_3247507_-	hypothetical protein	W8VMF4	Pseudomonas_phage	7.0e-25	29.8
WP_053822748.1\|3247509_3250707_-	tape measure protein	A0A125RNI9	Pseudomonas_phage	4.5e-36	23.6
WP_053822749.1\|3250710_3251358_-	hypothetical protein	NA	NA	NA	NA
WP_081092654.1\|3251335_3251521_-	hypothetical protein	NA	NA	NA	NA
WP_053822750.1\|3251547_3251937_-	hypothetical protein	NA	NA	NA	NA
WP_053822751.1\|3252701_3252881_-	hypothetical protein	NA	NA	NA	NA
WP_053822752.1\|3252887_3253313_-	hypothetical protein	D6PGA7	uncultured_phage	5.1e-12	35.5
WP_174782328.1\|3253324_3253609_-	hypothetical protein	NA	NA	NA	NA
WP_053822753.1\|3253608_3254610_-\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	1.3e-122	65.9
WP_053822754.1\|3254612_3254990_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	2.2e-27	50.4
WP_053822755.1\|3254991_3256299_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	3.8e-66	51.8
WP_053822756.1\|3256321_3257848_-\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	8.2e-153	56.6
WP_053822757.1\|3257849_3258056_-	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	1.4e-28	100.0
WP_053822758.1\|3258066_3260037_-\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	0.0e+00	100.0
WP_053822759.1\|3260047_3260575_-	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	2.3e-91	100.0
WP_053822760.1\|3260693_3261206_+	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	1.5e-50	100.0
WP_053822761.1\|3261303_3261669_+	hypothetical protein	A0A2H4JI44	uncultured_Caudovirales_phage	5.6e-68	100.0
WP_053822762.1\|3261632_3262901_-	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	4.3e-248	100.0
WP_053822763.1\|3262897_3264319_-	site-specific DNA-methyltransferase	K4I3Y2	Acidithiobacillus_phage	3.3e-164	60.8
WP_053822764.1\|3264649_3265036_-	hypothetical protein	NA	NA	NA	NA
WP_053822765.1\|3265028_3265238_-	hypothetical protein	NA	NA	NA	NA
WP_053822766.1\|3265857_3268140_-	hypothetical protein	K4HZY1	Acidithiobacillus_phage	0.0e+00	74.3
WP_053823234.1\|3268123_3268378_-	helix-turn-helix domain-containing protein	K4I1D6	Acidithiobacillus_phage	2.7e-08	41.1
WP_053822767.1\|3269116_3269638_-	hypothetical protein	K4I3X7	Acidithiobacillus_phage	4.8e-97	97.7
WP_053822768.1\|3269701_3270331_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	2.0e-97	92.5
WP_053822769.1\|3270334_3271165_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	7.3e-156	98.2
WP_053822770.1\|3271164_3271938_-	antirepressor	K4I1D2	Acidithiobacillus_phage	2.4e-140	98.1
WP_053822771.1\|3271941_3272421_-	hypothetical protein	K4HZ96	Acidithiobacillus_phage	4.5e-81	98.7
WP_053822772.1\|3272432_3272696_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_053822773.1\|3272878_3273292_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_053822774.1\|3273333_3273708_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_053822775.1\|3273719_3274013_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_053822776.1\|3274240_3274705_-	hypothetical protein	K4HZX2	Acidithiobacillus_phage	3.4e-17	39.7
WP_053822777.1\|3274701_3276099_-	recombinase family protein	K4ICM1	Acidithiobacillus_phage	9.5e-140	60.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010517

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP010516

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection