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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012070 Arsenicicoccus sp. oral taxon 190 strain F0371 chromosome 1, complete sequence 7 crisprs csa3,WYL,DEDDh,cas4,DinG 2 3 2 0

Results visualization

1. NZ_CP012070
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012070_1 276760-276929 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012070_2 659788-659879 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012070_3 1094168-1094242 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012070_4 1284297-1284372 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012070_5 1442611-1442687 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012070_6 1535095-1535171 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012070_7 2550241-2550331 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP012070_3 3.1|1094191|29|NZ_CP012070|CRISPRCasFinder 1094191-1094219 29 NZ_CP012070.1 1526148-1526176 2 0.931
NZ_CP012070_5 5.1|1442636|27|NZ_CP012070|CRISPRCasFinder 1442636-1442662 27 NZ_CP012070.1 174703-174729 2 0.926

1. spacer 3.1|1094191|29|NZ_CP012070|CRISPRCasFinder matches to position: 1526148-1526176, mismatch: 2, identity: 0.931

cgggacaggtcgtggccgcccggggacgc	CRISPR spacer
cgggacaggttgtggtcgcccggggacgc	Protospacer
**********.****.*************

2. spacer 5.1|1442636|27|NZ_CP012070|CRISPRCasFinder matches to position: 174703-174729, mismatch: 2, identity: 0.926

atggcgcccgtagacgaccacaacgtg	CRISPR spacer
atggcgcccgtgggcgaccacaacgtg	Protospacer
***********.*.*************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP012070_6 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder 1535120-1535146 27 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 1837580-1837606 4 0.852
NZ_CP012070_6 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder 1535120-1535146 27 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 1472835-1472861 4 0.852
NZ_CP012070_6 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder 1535120-1535146 27 NZ_CP024310 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence 770190-770216 4 0.852
NZ_CP012070_6 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder 1535120-1535146 27 NZ_CP023064 Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence 590601-590627 4 0.852
NZ_CP012070_6 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder 1535120-1535146 27 NZ_CP029232 Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence 612084-612110 4 0.852
NZ_CP012070_6 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder 1535120-1535146 27 NZ_CP013110 Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence 1332196-1332222 5 0.815
NZ_CP012070_6 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder 1535120-1535146 27 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 1491326-1491352 5 0.815
NZ_CP012070_6 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder 1535120-1535146 27 NZ_AP012556 Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence 176178-176204 5 0.815
NZ_CP012070_6 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder 1535120-1535146 27 NZ_CP013054 Sinorhizobium americanum CCGM7 plasmid C, complete sequence 1079193-1079219 5 0.815
NZ_CP012070_4 4.1|1284321|28|NZ_CP012070|CRISPRCasFinder 1284321-1284348 28 NZ_CP036516 Lichenihabitans psoromatis strain PAMC 29148 plasmid p_unnamed1, complete sequence 59869-59896 6 0.786
NZ_CP012070_6 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder 1535120-1535146 27 NZ_CP018784 Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence 167954-167980 6 0.778
NZ_CP012070_3 3.1|1094191|29|NZ_CP012070|CRISPRCasFinder 1094191-1094219 29 NZ_CP016083 Streptomyces sp. SAT1 plasmid unnamed3, complete sequence 199527-199555 7 0.759
NZ_CP012070_4 4.1|1284321|28|NZ_CP012070|CRISPRCasFinder 1284321-1284348 28 NZ_CP019608 Tessaracoccus flavescens strain SST-39T plasmid unnamed, complete sequence 3594-3621 7 0.75
NZ_CP012070_3 3.1|1094191|29|NZ_CP012070|CRISPRCasFinder 1094191-1094219 29 NZ_CP041653 Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence 73631-73659 8 0.724

1. spacer 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 4, identity: 0.852

gtatggcgccccctggcgaccgcaccg	CRISPR spacer
gcggggcgccccctggcgcccgcaccg	Protospacer
*.. ************** ********

2. spacer 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 4, identity: 0.852

gtatggcgccccctggcgaccgcaccg	CRISPR spacer
gcggggcgccccctggcgcccgcaccg	Protospacer
*.. ************** ********

3. spacer 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 4, identity: 0.852

gtatggcgccccctggcgaccgcaccg	CRISPR spacer
gcggggcgccccctggcgcccgcaccg	Protospacer
*.. ************** ********

4. spacer 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 4, identity: 0.852

gtatggcgccccctggcgaccgcaccg	CRISPR spacer
gcggggcgccccctggcgcccgcaccg	Protospacer
*.. ************** ********

5. spacer 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 4, identity: 0.852

gtatggcgccccctggcgaccgcaccg	CRISPR spacer
gcggggcgccccctggcgcccgcaccg	Protospacer
*.. ************** ********

6. spacer 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 5, identity: 0.815

gtatggcgccccctggcgaccgcaccg	CRISPR spacer
gcggggcgccctctggcgcccgcaccg	Protospacer
*.. *******.****** ********

7. spacer 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 5, identity: 0.815

gtatggcgccccctggcgaccgcaccg	CRISPR spacer
gcggggcgtcccctggcgcccgcaccg	Protospacer
*.. ****.********* ********

8. spacer 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 5, identity: 0.815

gtatggcgccccctggcgaccgcaccg	CRISPR spacer
attcggcggcccccggcgaccgcaccg	Protospacer
.* .**** ****.*************

9. spacer 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 5, identity: 0.815

gtatggcgccccctggcgaccgcaccg	CRISPR spacer
gcggggcgccctctggcgcccgcaccg	Protospacer
*.. *******.****** ********

10. spacer 4.1|1284321|28|NZ_CP012070|CRISPRCasFinder matches to NZ_CP036516 (Lichenihabitans psoromatis strain PAMC 29148 plasmid p_unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

agttgtggtcgtccgcgggcgggatacc	CRISPR spacer
ggacctggtcgtccgcagtcgggatacc	Protospacer
.* . ***********.* *********

11. spacer 6.1|1535120|27|NZ_CP012070|CRISPRCasFinder matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 6, identity: 0.778

gtatggcgccccctggcgaccgcaccg	CRISPR spacer
cagcggcgccccctcgcgaacgcaccg	Protospacer
  ..********** **** *******

12. spacer 3.1|1094191|29|NZ_CP012070|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.759

cgggacaggtcgtggccgcccggggacgc	CRISPR spacer
acggacaggccggggccgcccggggtgtc	Protospacer
  *******.** ************   *

13. spacer 4.1|1284321|28|NZ_CP012070|CRISPRCasFinder matches to NZ_CP019608 (Tessaracoccus flavescens strain SST-39T plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

agttgtggtcgtccgcgggcgggatacc	CRISPR spacer
tgttgtggtcgcccgcgggcggcggatg	Protospacer
 **********.********** . *. 

14. spacer 3.1|1094191|29|NZ_CP012070|CRISPRCasFinder matches to NZ_CP041653 (Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence) position: , mismatch: 8, identity: 0.724

cgggacaggtcgtggccgcccggggacgc	CRISPR spacer
tcggacagctcgtggctgcccggggggag	Protospacer
. ****** *******.********. . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1203796 : 1232893 29 Bacillus_phage(25.0%) transposase,integrase attL 1195346:1195405|attR 1235493:1235694
DBSCAN-SWA_2 2488326 : 2497952 8 Emiliania_huxleyi_virus(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage