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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LN824140 Bifidobacterium longum subsp. infantis strain CECT 7210 chromosome I 5 crisprs WYL,DEDDh,casR 0 1 5 0

Results visualization

1. NZ_LN824140
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN824140_1 562136-562219 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN824140_2 1021873-1021953 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN824140_3 1542284-1542369 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN824140_4 2121792-2122160 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN824140_5 2240651-2240736 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LN824140_4 4.5|2122053|24|NZ_LN824140|CRISPRCasFinder 2122053-2122076 24 NZ_CP047177 Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence 98015-98038 3 0.875
NZ_LN824140_4 4.5|2122053|24|NZ_LN824140|CRISPRCasFinder 2122053-2122076 24 NZ_CP013110 Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence 1789555-1789578 4 0.833

1. spacer 4.5|2122053|24|NZ_LN824140|CRISPRCasFinder matches to NZ_CP047177 (Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.875

atcggttccgcagccggctgccgg	CRISPR spacer
atcggttccgcagcgggcagccgt	Protospacer
************** *** **** 

2. spacer 4.5|2122053|24|NZ_LN824140|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 4, identity: 0.833

atcggttccgcagccggctgccgg	CRISPR spacer
gtcggttccgccgccggctgcctc	Protospacer
.********** **********  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7734 : 55046 38 Corynebacterium_phage(12.5%) integrase,transposase,tRNA attL 20190:20207|attR 24039:24056
DBSCAN-SWA_2 323603 : 336899 23 Bifidobacterium_phage(18.18%) capsid,portal,terminase NA
DBSCAN-SWA_3 743071 : 782594 58 Bifidobacterium_phage(47.62%) portal,coat,terminase,holin,tail,integrase attL 742989:743029|attR 782820:782860
DBSCAN-SWA_4 2237185 : 2277875 36 Arthrobacter_phage(16.67%) transposase,portal,capsid,head,tRNA,holin,tail,integrase attL 2247118:2247133|attR 2269651:2269666
DBSCAN-SWA_5 2437330 : 2450733 10 Corynebacterium_phage(25.0%) integrase,transposase attL 2447425:2447484|attR 2450810:2450905
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage