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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP012034 Lactobacillus ginsenosidimutans strain EMML 3041, complete genome 2 crisprs DinG,DEDDh,cas3,csa3,WYL,cas14j 0 0 196 0

Results visualization

1. NZ_CP012034
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012034_1 607146-607308 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP012034_2 1679428-1679538 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 43981 64 Lactobacillus_phage(50.0%) head,tail,portal,terminase,integrase attL 1:60|attR 32471:44675
DBSCAN-SWA_2 49828 : 50437 1 Lactobacillus_virus(100.0%) NA NA
DBSCAN-SWA_3 55584 : 56646 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_4 64123 : 65326 1 Methanothermobacter_phage(100.0%) NA NA
DBSCAN-SWA_5 69569 : 78091 7 Lactobacillus_phage(20.0%) NA NA
DBSCAN-SWA_6 85455 : 94660 7 Enterobacteria_phage(25.0%) protease NA
DBSCAN-SWA_7 109691 : 111335 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_8 128840 : 129674 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_9 140771 : 141725 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_10 157368 : 158031 1 Lactobacillus_virus(100.0%) NA NA
DBSCAN-SWA_11 170102 : 170648 1 Red_sea_bream_iridovirus(100.0%) NA NA
DBSCAN-SWA_12 173982 : 174909 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_13 181419 : 182361 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_14 195363 : 195858 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_15 204747 : 207554 4 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_16 214180 : 215410 1 Aeromonas_phage(100.0%) NA NA
DBSCAN-SWA_17 218778 : 311179 106 Lactobacillus_phage(39.02%) protease,head,capsid,transposase,tail,plate,tRNA,portal,terminase,integrase attL 227548:227565|attR 271368:271385
DBSCAN-SWA_18 331588 : 334369 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_19 340400 : 343806 2 Brevibacillus_phage(50.0%) NA NA
DBSCAN-SWA_20 347993 : 348989 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_21 352524 : 353952 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_22 359125 : 363604 4 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_23 368505 : 386283 16 Hokovirus(11.11%) tRNA,protease NA
DBSCAN-SWA_24 414974 : 419207 5 Bacillus_virus(33.33%) transposase NA
DBSCAN-SWA_25 426734 : 435732 9 Salmonella_virus(33.33%) NA NA
DBSCAN-SWA_26 439562 : 440684 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_27 450500 : 453085 4 uncultured_Mediterranean_phage(66.67%) NA NA
DBSCAN-SWA_28 458089 : 482072 23 Staphylococcus_phage(15.38%) tRNA,protease NA
DBSCAN-SWA_29 496258 : 498049 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_30 504228 : 506209 2 Lactococcus_phage(100.0%) transposase NA
DBSCAN-SWA_31 510281 : 511958 1 Dishui_lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_32 516140 : 517055 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_33 526267 : 526891 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_34 530006 : 537701 4 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_35 553539 : 557928 3 Orpheovirus(33.33%) NA NA
DBSCAN-SWA_36 563783 : 577507 13 Hokovirus(33.33%) tRNA NA
DBSCAN-SWA_37 585570 : 587499 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_38 601790 : 604641 2 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_39 609729 : 628455 14 Streptococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_40 632318 : 633062 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_41 636420 : 650908 17 Prochlorococcus_phage(22.22%) NA NA
DBSCAN-SWA_42 659927 : 660946 2 Indivirus(50.0%) NA NA
DBSCAN-SWA_43 668831 : 677195 7 Pandoravirus(33.33%) tRNA NA
DBSCAN-SWA_44 681328 : 683522 2 Megavirus(50.0%) NA NA
DBSCAN-SWA_45 688510 : 688693 1 Listeria_phage(100.0%) NA NA
DBSCAN-SWA_46 700673 : 709964 8 Bacillus_phage(40.0%) tRNA NA
DBSCAN-SWA_47 716657 : 727441 9 Bacillus_phage(40.0%) tRNA NA
DBSCAN-SWA_48 732250 : 733496 2 Anomala_cuprea_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_49 739416 : 740589 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_50 745287 : 746982 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_51 751625 : 763968 9 Staphylococcus_phage(16.67%) transposase NA
DBSCAN-SWA_52 776611 : 871215 98 Lactobacillus_phage(58.54%) protease,head,capsid,transposase,tail,tRNA,plate,portal,terminase,integrase attL 816620:816679|attR 873902:877130
DBSCAN-SWA_53 879900 : 880890 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_54 885076 : 887517 3 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_55 895567 : 896167 1 Euphorbia_ringspot_virus(100.0%) NA NA
DBSCAN-SWA_56 899265 : 922191 19 uncultured_Mediterranean_phage(22.22%) tRNA NA
DBSCAN-SWA_57 926565 : 928540 2 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_58 936144 : 949287 17 Streptococcus_phage(40.0%) tRNA NA
DBSCAN-SWA_59 953420 : 957756 7 Bacillus_virus(50.0%) tRNA NA
DBSCAN-SWA_60 961910 : 964955 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_61 968011 : 970099 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_62 975727 : 983895 8 Staphylococcus_phage(66.67%) transposase NA
DBSCAN-SWA_63 987869 : 990621 3 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_64 994239 : 995900 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_65 1011481 : 1036515 15 Streptococcus_phage(11.11%) tRNA,transposase,protease NA
DBSCAN-SWA_66 1046108 : 1052715 5 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_67 1055878 : 1064093 7 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_68 1068916 : 1077001 8 Tupanvirus(25.0%) tRNA NA
DBSCAN-SWA_69 1081052 : 1081700 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_70 1096397 : 1098363 4 Escherichia_coli_O157_typing_phage(33.33%) NA NA
DBSCAN-SWA_71 1102160 : 1103021 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_72 1108921 : 1113308 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_73 1128476 : 1129115 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_74 1149468 : 1154192 4 Micromonas_sp._RCC1109_virus(33.33%) transposase NA
DBSCAN-SWA_75 1161066 : 1167133 5 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_76 1186470 : 1187559 1 Lactococcus_phage(100.0%) integrase attL 1172101:1172121|attR 1197391:1197411
DBSCAN-SWA_77 1197566 : 1205293 10 Pneumococcus_phage(20.0%) transposase NA
DBSCAN-SWA_78 1218669 : 1220070 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_79 1231011 : 1234033 3 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_80 1238560 : 1241633 5 Staphylococcus_phage(66.67%) protease NA
DBSCAN-SWA_81 1246125 : 1248867 2 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_82 1254990 : 1263994 7 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_83 1282003 : 1282678 1 Paenibacillus_phage(100.0%) NA NA
DBSCAN-SWA_84 1290905 : 1291304 1 Aeribacillus_phage(100.0%) NA NA
DBSCAN-SWA_85 1294818 : 1305159 10 Ostreococcus_mediterraneus_virus(33.33%) NA NA
DBSCAN-SWA_86 1310405 : 1312997 2 Acanthocystis_turfacea_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_87 1317847 : 1328933 11 Streptococcus_phage(57.14%) NA NA
DBSCAN-SWA_88 1332875 : 1335239 3 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_89 1340937 : 1342881 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_90 1349074 : 1354021 5 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_91 1362855 : 1363512 1 Golden_Marseillevirus(100.0%) NA NA
DBSCAN-SWA_92 1369529 : 1372228 3 Paenibacillus_phage(50.0%) transposase NA
DBSCAN-SWA_93 1397258 : 1398266 1 Acanthamoeba_polyphaga_mimivirus(100.0%) NA NA
DBSCAN-SWA_94 1401322 : 1408008 5 Enterococcus_phage(25.0%) NA NA
DBSCAN-SWA_95 1419591 : 1425491 7 Staphylococcus_phage(25.0%) NA NA
DBSCAN-SWA_96 1428737 : 1429994 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_97 1434273 : 1436022 3 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_98 1449905 : 1451027 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_99 1454125 : 1455112 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_100 1458446 : 1459178 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_101 1477680 : 1479585 2 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_102 1483968 : 1492422 6 Oenococcus_phage(33.33%) NA NA
DBSCAN-SWA_103 1507209 : 1513345 5 Acinetobacter_phage(50.0%) transposase NA
DBSCAN-SWA_104 1525396 : 1526560 1 Rhodococcus_phage(100.0%) NA NA
DBSCAN-SWA_105 1533948 : 1534713 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_106 1550793 : 1556070 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_107 1578642 : 1579398 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_108 1584145 : 1584517 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_109 1587563 : 1591205 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_110 1599102 : 1604225 7 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_111 1613921 : 1614494 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_112 1636279 : 1637215 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_113 1641285 : 1642023 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_114 1646518 : 1653634 8 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_115 1660949 : 1661999 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_116 1666626 : 1667574 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_117 1684355 : 1690916 8 Enterococcus_phage(60.0%) NA NA
DBSCAN-SWA_118 1694433 : 1695150 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_119 1701878 : 1703859 2 Lactococcus_phage(100.0%) transposase NA
DBSCAN-SWA_120 1709403 : 1710453 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_121 1727008 : 1728202 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_122 1758188 : 1759730 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_123 1767486 : 1781530 12 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_124 1803069 : 1804458 1 Moumouvirus(100.0%) tRNA NA
DBSCAN-SWA_125 1807968 : 1809297 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_126 1813623 : 1815549 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_127 1820815 : 1824928 7 Orpheovirus(50.0%) NA NA
DBSCAN-SWA_128 1833348 : 1834113 2 Leuconostoc_phage(50.0%) NA NA
DBSCAN-SWA_129 1837522 : 1840401 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_130 1846981 : 1849734 2 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_131 1860404 : 1863880 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_132 1869152 : 1869692 1 Xanthomonas_phage(100.0%) NA NA
DBSCAN-SWA_133 1874439 : 1875213 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_134 1880433 : 1881747 1 Phaeocystis_globosa_virus(100.0%) NA NA
DBSCAN-SWA_135 1889557 : 1892296 2 Erysipelothrix_phage(50.0%) NA NA
DBSCAN-SWA_136 1898779 : 1904538 7 Bifidobacterium_phage(40.0%) NA NA
DBSCAN-SWA_137 1909074 : 1910898 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_138 1916029 : 1918920 3 Anomala_cuprea_entomopoxvirus(50.0%) transposase NA
DBSCAN-SWA_139 1922592 : 1924215 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_140 1929421 : 1933424 2 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_141 1942859 : 1943909 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_142 1952590 : 1953871 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_143 1960398 : 1960779 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_144 1964681 : 1966782 2 Indivirus(50.0%) NA NA
DBSCAN-SWA_145 1970317 : 1971547 1 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_146 1984615 : 1989237 5 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_147 1995570 : 1999111 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_148 2017364 : 2018084 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_149 2022009 : 2027717 6 Staphylococcus_phage(60.0%) NA NA
DBSCAN-SWA_150 2052146 : 2053280 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_151 2059733 : 2060483 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_152 2065226 : 2069634 3 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_153 2072661 : 2074827 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_154 2078956 : 2081898 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_155 2093101 : 2100418 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_156 2109632 : 2116004 4 Moumouvirus(33.33%) NA NA
DBSCAN-SWA_157 2119734 : 2123399 3 uncultured_virus(66.67%) NA NA
DBSCAN-SWA_158 2128239 : 2129244 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_159 2134645 : 2138538 3 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_160 2141894 : 2144858 3 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_161 2150531 : 2151734 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_162 2155126 : 2157311 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_163 2165522 : 2166452 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_164 2169615 : 2171751 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_165 2174799 : 2177154 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_166 2185346 : 2188276 2 Cafeteria_roenbergensis_virus(50.0%) NA NA
DBSCAN-SWA_167 2199222 : 2202089 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_168 2206545 : 2207229 1 Lactobacillus_virus(100.0%) NA NA
DBSCAN-SWA_169 2212363 : 2213104 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_170 2218801 : 2229825 11 Planktothrix_phage(20.0%) NA NA
DBSCAN-SWA_171 2237051 : 2237951 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_172 2241016 : 2243987 5 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_173 2259498 : 2260788 1 uncultured_Mediterranean_phage(100.0%) tRNA NA
DBSCAN-SWA_174 2268257 : 2272173 3 Only_Syngen_Nebraska_virus(50.0%) NA NA
DBSCAN-SWA_175 2279180 : 2281471 2 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_176 2284576 : 2285554 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_177 2290740 : 2300344 7 Lactococcus_phage(20.0%) NA NA
DBSCAN-SWA_178 2304704 : 2307084 2 Catovirus(50.0%) NA NA
DBSCAN-SWA_179 2315758 : 2317789 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_180 2324978 : 2325509 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_181 2333674 : 2334817 1 Chrysochromulina_ericina_virus(100.0%) NA NA
DBSCAN-SWA_182 2338368 : 2339271 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_183 2345376 : 2363197 15 Lactobacillus_virus(14.29%) NA NA
DBSCAN-SWA_184 2366311 : 2370616 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_185 2380735 : 2397895 14 Bodo_saltans_virus(14.29%) protease NA
DBSCAN-SWA_186 2406118 : 2406793 1 Paenibacillus_phage(100.0%) NA NA
DBSCAN-SWA_187 2410970 : 2411876 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_188 2425589 : 2429305 2 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_189 2433525 : 2439592 5 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_190 2444703 : 2451421 7 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_191 2454738 : 2460738 4 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_192 2464124 : 2476226 10 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_193 2483638 : 2484940 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_194 2488765 : 2498471 12 Lactococcus_phage(20.0%) tRNA NA
DBSCAN-SWA_195 2506066 : 2507878 1 Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_196 2530070 : 2588454 67 Lactobacillus_phage(44.83%) integrase,transposase,portal,terminase attL 2546823:2546840|attR 2572414:2572431
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage