CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT904854	Salmonella enterica subsp. enterica serovar Typhi strain M223 chromosome 1	2 crisprs	PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,DEDDh,cas3,DinG,c2c9_V-U4	0	3	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT904854_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT904854_1

572254-572354

Orphan

Consensus_repeat	Method
GCTTCAGTGGCGAACGTCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT904854_1

>merge|NZ_LT904854|1|572254-572354|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAAGGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTCGCTTCAGCGGCGAACGTCGTGAA

>NZ_LT904854|1|1|572254-572354|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAA	GGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTC
GCTTCAGCGGCGAACGTCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT904854.1\|WP_077905076.1\|575087_575984_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_LT904854.1\|WP_000059465.1\|566705_566975_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_LT904854.1\|WP_000037599.1\|578972_579491_-\|protein/nucleic-acid-deglycase	unknown	unknown	gnl\|CDD\|153228
NZ_LT904854.1\|WP_000380404.1\|578549_578993_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_LT904854.1\|WP_001638995.1\|579621_580257_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_LT904854.1\|WP_010723222.1\|570451_570532_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_LT904854.1\|WP_001040208.1\|565209_565611_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_LT904854.1\|WP_000802069.1\|569461_570346_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_LT904854.1\|WP_000089682.1\|565610_566555_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_LT904854.1\|WP_000908562.1\|577704_578208_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_LT904854.1\|WP_010989243.1\|567216_569352_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_LT904854.1\|WP_000884720.1\|577186_577711_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_LT904854.1\|WP_000928379.1\|578194_578512_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_LT904854.1\|WP_000207645.1\|558332_559676_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_LT904854.1\|WP_000130426.1\|573902_574910_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_LT904854.1\|WP_000421309.1\|575974_576970_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_LT904854.1\|WP_000131175.1\|562310_564989_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_LT904854.1\|WP_001031036.1\|560783_562286_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_LT904854.1\|WP_000105461.1\|560303_560756_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_LT904854.1\|WP_000224390.1\|572567_573812_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492

Protein	Function_ID	Function_description	E-value
NZ_LT904854.1\|WP_077905076.1\|575087_575984_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_LT904854.1\|WP_000059465.1\|566705_566975_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	7.70279e-54
NZ_LT904854.1\|WP_000037599.1\|578972_579491_-\|protein/nucleic-acid-deglycase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	5.12939e-86
NZ_LT904854.1\|WP_000380404.1\|578549_578993_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	1.36854e-99
NZ_LT904854.1\|WP_001638995.1\|579621_580257_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.31829e-69
NZ_LT904854.1\|WP_010723222.1\|570451_570532_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	1.66225e-08
NZ_LT904854.1\|WP_001040208.1\|565209_565611_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	2.271e-52
NZ_LT904854.1\|WP_000802069.1\|569461_570346_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_LT904854.1\|WP_000089682.1\|565610_566555_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_LT904854.1\|WP_000908562.1\|577704_578208_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	7.2703e-63
NZ_LT904854.1\|WP_010989243.1\|567216_569352_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_LT904854.1\|WP_000884720.1\|577186_577711_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.07362e-84
NZ_LT904854.1\|WP_000928379.1\|578194_578512_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	4.3214e-44
NZ_LT904854.1\|WP_000207645.1\|558332_559676_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_LT904854.1\|WP_000130426.1\|573902_574910_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_LT904854.1\|WP_000421309.1\|575974_576970_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.77757e-116
NZ_LT904854.1\|WP_000131175.1\|562310_564989_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_LT904854.1\|WP_001031036.1\|560783_562286_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_LT904854.1\|WP_000105461.1\|560303_560756_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.39218e-79
NZ_LT904854.1\|WP_000224390.1\|572567_573812_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0

>NZ_LT904854.1|WP_010723222.1|570451_570532_+|protein-YrbN
MKIADQFHDELCRLAAINFEAHVLHG
>NZ_LT904854.1|WP_000802069.1|569461_570346_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
>NZ_LT904854.1|WP_010989243.1|567216_569352_+|polyribonucleotide-nucleotidyltransferase
MLNPIVREFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNSKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQAE
>NZ_LT904854.1|WP_000059465.1|566705_566975_+|30S-ribosomal-protein-S15
MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_LT904854.1|WP_000089682.1|565610_566555_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPSMYSALKYQGRKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEHLQTLVAQAEQQGVPAAQLLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDDKFIGMGEIDDEGRVAPRRLVVEYPA
>NZ_LT904854.1|WP_001040208.1|565209_565611_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQEMQKEIALILQREIKDPRVGMMTTVSGVEMSRDLAYAKVFVTFLNDQDEAAVKNGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED
>NZ_LT904854.1|WP_000131175.1|562310_564989_+|translation-initiation-factor-IF-2
MTDLTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQTLLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVSNQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFVNMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA
>NZ_LT904854.1|WP_001031036.1|560783_562286_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVHLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA
>NZ_LT904854.1|WP_000105461.1|560303_560756_+|ribosome-maturation-factor-RimP
MSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_LT904854.1|WP_000207645.1|558332_559676_-|argininosuccinate-synthase
MTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDYSILNTVSDNLTYKAERLTMEKGESVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLLTASSATGLPQVENLENKAK
>NZ_LT904854.1|WP_000224390.1|572567_573812_+|tryptophan-permease
MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPTTLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIVKCLIYGTLLALALYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFLPPMIGGLLYPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGKPMIALILVFGVGNAVIHILSSFNLLPVYQ
>NZ_LT904854.1|WP_000130426.1|573902_574910_-|LLM-class-flavin-dependent-oxidoreductase
MTDKTIPFSVLDLAPIPEGSSAKEAFTHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQPTMRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPIWLLGSSLYSAQLAAQLGLPFAFASHFTPDMLFQALHLYRTQFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIENMETFWSPSEQYGVQQALSMSLVGDKAKVRHGLVSILRETQADEIMVNGQIFDHQARLHSFDLAMDVKQELLG
>NZ_LT904854.1|WP_077905076.1|575087_575984_-|U32-family-peptidase
MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADIIYLGEAVCSKRRATKVGDWLEMAKSLAASGKQVALSTLALVQASSELSELKRYVDNGDFLLEASDLGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQQVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPLPLAAHSDCNGYWKRLAGLELQA
>NZ_LT904854.1|WP_000421309.1|575974_576970_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_LT904854.1|WP_000884720.1|577186_577711_+|SCP2-domain-containing-protein
MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQALADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRIMLLQLADFVEAGMKNSPETKQTSVGEPC
>NZ_LT904854.1|WP_000908562.1|577704_578208_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEYHDHFNRF
>NZ_LT904854.1|WP_000928379.1|578194_578512_-|GIY-YIG-nuclease-family-protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
>NZ_LT904854.1|WP_000380404.1|578549_578993_+|YhbP-family-protein
MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALYLLTDDKTRHAQMSGACAPVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDAARKAYLRRFPVARVLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA
>NZ_LT904854.1|WP_000037599.1|578972_579491_-|protein/nucleic-acid-deglycase
MSKKIAVLITDEFEDSEFTSPAAEFRQAGHEVITIEKEAGKTVKGKKGEASVTIDKAIDDVRPDEFDALLLPGGHSPDYLRGDSRFVDFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>NZ_LT904854.1|WP_001638995.1|579621_580257_+|NAD(P)H-binding-protein
MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNETLFAPLFRLLPGNWKSIDARDVARAMLAEALEPAQEGVTILTSSQLREKAG

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Crispr_ID: NZ_LT904854_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT904854_2

947370-947790

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NZ_LT904854_2

>merge|NZ_LT904854|2|947370-947790|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGATCCCCGCGCCAGCGGGGATAAACCGATCCCCGCGGAGGTTGCGCAACCGGTGTTTTAGTGTTCCCCGCACCAGCGGGGATAAACCGTAAAACTATAACCAACATTAATCTTTTTTAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGCCAAAGAGGGCGACGTAAAGGCGTATCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGTAAAAATCACGGTCGGCATACATCGTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATTCACGCGGCGGCGATTGGCGATTCGCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGATCTGTCTGATATCCGACACGGGTTGCTGTCCGTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_LT904854|2|1|947370-947790|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCCGCGCCAGCGGGGATAAACCGATCCCCGCGGAGGTTGCGCAACCGGTGTTTTA
GTGTTCCCCGCACCAGCGGGGATAAACCG	TAAAACTATAACCAACATTAATCTTTTTTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCAAAGAGGGCGACGTAAAGGCGTATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTAAAAATCACGGTCGGCATACATCGTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATTCACGCGGCGGCGATTGGCGATTCGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCTGTCTGATATCCGACACGGGTTGCTGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_LT904854|2|2|947370-947790|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCCGCGCCAGCGGGGATAAACCGATCCCCGCGGAGGTTGCGCAACCGGTGTTTTA
GTGTTCCCCGCACCAGCGGGGATAAACCG	TAAAACTATAACCAACATTAATCTTTTTTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCAAAGAGGGCGACGTAAAGGCGTATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTAAAAATCACGGTCGGCATACATCGTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATTCACGCGGCGGCGATTGGCGATTCGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCTGTCTGATATCCGACACGGGTTGCTGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_LT904854|2|1|947396-947790|CRT
CCGATCCCCGCGCCAGCGGGGATAAACCG	ATCCCCGCGGAGGTTGCGCAACCGGTGTTTTA
GTGTTCCCCGCACCAGCGGGGATAAACCG	TAAAACTATAACCAACATTAATCTTTTTTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCAAAGAGGGCGACGTAAAGGCGTATCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTAAAAATCACGGTCGGCATACATCGTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATTCACGCGGCGGCGATTGGCGATTCGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCTGTCTGATATCCGACACGGGTTGCTGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT904854.1\|WP_000281411.1\|945367_946072_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
NZ_LT904854.1\|WP_000062282.1\|946991_947285_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_LT904854.1\|WP_001221538.1\|955161_955923_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_LT904854.1\|WP_000741649.1\|952945_953656_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_LT904854.1\|WP_001681565.1\|943574_944633_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_LT904854.1\|WP_000366321.1\|941397_942933_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_LT904854.1\|WP_001092273.1\|950019_951459_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_LT904854.1\|WP_000118669.1\|946071_946989_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_LT904854.1\|WP_000517480.1\|952615_952927_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_LT904854.1\|WP_001537530.1\|952101_952425_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_LT904854.1\|WP_000134253.1\|954131_955181_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_LT904854.1\|WP_000935107.1\|942949_943552_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_LT904854.1\|WP_000490486.1\|947804_948851_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_LT904854.1\|WP_000372384.1\|949101_950010_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_LT904854.1\|WP_001173663.1\|951445_952051_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_LT904854.1\|WP_000080392.1\|936183_936918_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_LT904854.1\|WP_001219244.1\|953655_954135_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_LT904854.1\|WP_001291998.1\|934395_936108_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_LT904854.1\|WP_000666425.1\|944642_945368_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_LT904854.1\|WP_001145541.1\|937005_937959_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
NZ_LT904854.1\|WP_000281411.1\|945367_946072_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.23447e-89
NZ_LT904854.1\|WP_000062282.1\|946991_947285_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
NZ_LT904854.1\|WP_001221538.1\|955161_955923_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_LT904854.1\|WP_000741649.1\|952945_953656_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NZ_LT904854.1\|WP_001681565.1\|943574_944633_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.49739e-119
NZ_LT904854.1\|WP_000366321.1\|941397_942933_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_LT904854.1\|WP_001092273.1\|950019_951459_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_LT904854.1\|WP_000118669.1\|946071_946989_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.77553e-155
NZ_LT904854.1\|WP_000517480.1\|952615_952927_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_LT904854.1\|WP_001537530.1\|952101_952425_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_LT904854.1\|WP_000134253.1\|954131_955181_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_LT904854.1\|WP_000935107.1\|942949_943552_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
NZ_LT904854.1\|WP_000490486.1\|947804_948851_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_LT904854.1\|WP_000372384.1\|949101_950010_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_LT904854.1\|WP_001173663.1\|951445_952051_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_LT904854.1\|WP_000080392.1\|936183_936918_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.17372e-138
NZ_LT904854.1\|WP_001219244.1\|953655_954135_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_LT904854.1\|WP_001291998.1\|934395_936108_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_LT904854.1\|WP_000666425.1\|944642_945368_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.27863e-48
NZ_LT904854.1\|WP_001145541.1\|937005_937959_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0

>NZ_LT904854.1|WP_000062282.1|946991_947285_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>NZ_LT904854.1|WP_000118669.1|946071_946989_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFEIVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSHPIAIPLPVALGDSGHRST
>NZ_LT904854.1|WP_000281411.1|945367_946072_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKLFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NZ_LT904854.1|WP_000666425.1|944642_945368_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_LT904854.1|WP_001681565.1|943574_944633_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_LT904854.1|WP_000935107.1|942949_943552_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>NZ_LT904854.1|WP_000366321.1|941397_942933_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_LT904854.1|WP_001145541.1|937005_937959_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_LT904854.1|WP_000080392.1|936183_936918_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWAQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_LT904854.1|WP_001291998.1|934395_936108_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKYPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDIQASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_LT904854.1|WP_000490486.1|947804_948851_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLNNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_LT904854.1|WP_000372384.1|949101_950010_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_LT904854.1|WP_001092273.1|950019_951459_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNPDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEVCAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_LT904854.1|WP_001173663.1|951445_952051_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_LT904854.1|WP_001537530.1|952101_952425_+|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_LT904854.1|WP_000517480.1|952615_952927_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_LT904854.1|WP_000741649.1|952945_953656_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_LT904854.1|WP_001219244.1|953655_954135_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_LT904854.1|WP_000134253.1|954131_955181_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_LT904854.1|WP_001221538.1|955161_955923_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453979-454010	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251927	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6517-6548	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238903	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235351-235382	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378779-378810	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82570	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224310	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221158	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284077	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219176	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55526	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376247	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134902	5	0.844
NZ_LT904854_2	2.4\|947608\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947608-947639	32	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88841-88872	5	0.844
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	KJ019071	Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome	59609-59640	7	0.781
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN694480	Marine virus AFVG_250M133, complete genome	20886-20917	7	0.781
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN694671	Marine virus AFVG_250M145, complete genome	23163-23194	7	0.781
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN694753	Marine virus AFVG_250M144, complete genome	25459-25490	7	0.781
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN694231	Marine virus AFVG_250M143, complete genome	21163-21194	7	0.781
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN693981	Marine virus AFVG_250M146, complete genome	18773-18804	7	0.781
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	559039-559070	8	0.75
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	214654-214685	8	0.75
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	578776-578807	8	0.75
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	592092-592123	8	0.75
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN694115	Marine virus AFVG_250M901, complete genome	49467-49498	8	0.75
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	NZ_CP046630	Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence	66427-66458	9	0.719
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	NZ_CP046920	Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence	70206-70237	9	0.719
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN694046	Marine virus AFVG_250M906, complete genome	22321-22352	9	0.719
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN693836	Marine virus AFVG_250M487, complete genome	10882-10913	9	0.719
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN693891	Marine virus AFVG_250M480, complete genome	21841-21872	9	0.719
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MK268344	Salmonella phage Munch, complete genome	122526-122557	9	0.719
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN694071	Marine virus AFVG_250M483, complete genome	16976-17007	9	0.719
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN694294	Marine virus AFVG_250M486, complete genome	8469-8500	9	0.719
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN693751	Marine virus AFVG_250M485, complete genome	13096-13127	9	0.719
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN694002	Marine virus AFVG_250M481, complete genome	18787-18818	9	0.719
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN694650	Marine virus AFVG_250M482, complete genome	20198-20229	9	0.719
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN693906	Marine virus AFVG_250M905, complete genome	17506-17537	9	0.719
NZ_LT904854_2	2.2\|947486\|32\|NZ_LT904854\|PILER-CR,CRISPRCasFinder,CRT	947486-947517	32	MN694711	Marine virus AFVG_250M484, complete genome	24974-25005	9	0.719
NZ_LT904854_2	2.7\|947425\|32\|NZ_LT904854\|CRT	947425-947456	32	KR052482	Sinorhizobium phage phiN3, complete genome	197290-197321	9	0.719

1. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

2. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

3. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

4. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

5. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

6. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

7. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

8. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

9. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

10. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

11. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

12. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

13. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

14. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

15. spacer 2.4|947608|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 5, identity: 0.844

gcggtaaaaatcacggtcggcatacatcgtgg	CRISPR spacer
gctcgaaaaatcacgctcgggatacatcgtgg	Protospacer
**   ********** **** ***********

16. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 7, identity: 0.781

taaaactataaccaacattaatcttttttaat	CRISPR spacer
ctaaactataaccaacattaaccattgtaatt	Protospacer
. *******************.* ** * * *

17. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN694480 (Marine virus AFVG_250M133, complete genome) position: , mismatch: 7, identity: 0.781

taaaactataaccaacattaatc----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaattttc----	Protospacer
********.***.**********    ****.

18. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN694671 (Marine virus AFVG_250M145, complete genome) position: , mismatch: 7, identity: 0.781

taaaactataaccaacattaatc----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaattttc----	Protospacer
********.***.**********    ****.

19. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN694753 (Marine virus AFVG_250M144, complete genome) position: , mismatch: 7, identity: 0.781

taaaactataaccaacattaatc----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaattttc----	Protospacer
********.***.**********    ****.

20. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN694231 (Marine virus AFVG_250M143, complete genome) position: , mismatch: 7, identity: 0.781

taaaactataaccaacattaatc----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaattttc----	Protospacer
********.***.**********    ****.

21. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN693981 (Marine virus AFVG_250M146, complete genome) position: , mismatch: 7, identity: 0.781

taaaactataaccaacattaatc----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaattttc----	Protospacer
********.***.**********    ****.

22. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 8, identity: 0.75

taaaacta--taaccaacattaatcttttttaat	CRISPR spacer
--acgttgattaaacaacattaatctttcttaat	Protospacer
  * ..*.  *** **************.*****

23. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 8, identity: 0.75

taaaacta--taaccaacattaatcttttttaat	CRISPR spacer
--acgttgattaaacaacattaatctttcttaat	Protospacer
  * ..*.  *** **************.*****

24. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.75

taaaacta--taaccaacattaatcttttttaat	CRISPR spacer
--acgttgattaaacaacattaatctttcttaat	Protospacer
  * ..*.  *** **************.*****

25. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 8, identity: 0.75

taaaacta--taaccaacattaatcttttttaat	CRISPR spacer
--acgttgattaaacaacattaatctttcttaat	Protospacer
  * ..*.  *** **************.*****

26. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN694115 (Marine virus AFVG_250M901, complete genome) position: , mismatch: 8, identity: 0.75

taaaactataaccaacattaatcttttttaat	CRISPR spacer
ttacggaagaaccaagattaatattttttaat	Protospacer
* * .  * ****** ****** *********

27. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046630 (Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatcttttttaat	CRISPR spacer
agttattataaacaacattaatcatttttctt	Protospacer
 .  *.***** *********** *****  *

28. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046920 (Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatcttttttaat	CRISPR spacer
agttattataaacaacattaatcatttttctt	Protospacer
 .  *.***** *********** *****  *

29. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN694046 (Marine virus AFVG_250M906, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

30. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN693836 (Marine virus AFVG_250M487, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

31. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN693891 (Marine virus AFVG_250M480, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

32. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatcttttttaat	CRISPR spacer
taaaactaaaaccatcattaatcaatgctgcc	Protospacer
******** ***** ********  * .*. .

33. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN694071 (Marine virus AFVG_250M483, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

34. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN694294 (Marine virus AFVG_250M486, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

35. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN693751 (Marine virus AFVG_250M485, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

36. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN694002 (Marine virus AFVG_250M481, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

37. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN694650 (Marine virus AFVG_250M482, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

38. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN693906 (Marine virus AFVG_250M905, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

39. spacer 2.2|947486|32|NZ_LT904854|PILER-CR,CRISPRCasFinder,CRT matches to MN694711 (Marine virus AFVG_250M484, complete genome) position: , mismatch: 9, identity: 0.719

taaaactataaccaacattaatc-----ttttttaat	CRISPR spacer
taaaactacaactaacattaatcgaaaacttc-----	Protospacer
********.***.**********     .**.

40. spacer 2.7|947425|32|NZ_LT904854|CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 9, identity: 0.719

atccccgcggaggttgcgcaaccggtgtttta	CRISPR spacer
ttttttgcgtaggtttcgcaaccggtgttgtt	Protospacer
 *....*** ***** ************* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

738608 : 774720

Acinetobacter_phage(33.33%)

integrase,tRNA,bacteriocin,protease,transposase

attL 728241:728255|attR 761998:762012

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
728241:728255	attL	NA	NA	NA	NA
WP_000421096.1\|738608_738887_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_000768134.1\|739129_739396_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_001141622.1\|739392_739710_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_014341481.1\|740830_741175_-\|integrase	integrase	NA	NA	NA	NA
WP_001681938.1\|741359_741644_-	DUF4102 domain-containing protein	A0A0P0IRB7	Acinetobacter_phage	3.2e-10	35.2
WP_000234466.1\|741985_742693_-	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001049802.1\|745303_746560_-	nucleoside permease	NA	NA	NA	NA
WP_000976287.1\|746776_747862_-	membrane-bound lytic murein transglycosylase MltC	A0A0H3V0Q1	Geobacillus_virus	5.8e-12	39.0
WP_000091706.1\|747974_748250_-	oxidative damage protection protein	NA	NA	NA	NA
WP_001148958.1\|748277_749330_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000786887.1\|749484_750204_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001107559.1\|750203_750530_+	YggL family protein	NA	NA	NA	NA
WP_000984827.1\|750579_751299_+	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_000502119.1\|751421_751880_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000394189.1\|752198_753245_+	L-asparaginase 2	NA	NA	NA	NA
WP_000252198.1\|753377_754385_+	DUF1202 domain-containing protein	NA	NA	NA	NA
WP_001096530.1\|754475_755612_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_001174773.1\|755604_756198_-	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_001277205.1\|756205_756496_-	YggU family protein	NA	NA	NA	NA
WP_001094848.1\|756492_757059_-	YggT family protein	NA	NA	NA	NA
WP_000997790.1\|757077_757782_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_001055657.1\|757799_758780_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000098333.1\|758909_759596_+	global regulatory protein	NA	NA	NA	NA
WP_001285491.1\|759642_760059_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001053167.1\|760058_760622_-	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000593242.1\|760837_761785_-	glutathione synthase	NA	NA	NA	NA
WP_001800534.1\|761804_762536_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
761998:762012	attR	NA	NA	NA	NA
WP_000286121.1\|762612_763320_-	deoxyribonuclease I	NA	NA	NA	NA
WP_000856776.1\|763415_763913_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_001113171.1\|763991_765386_-	galactose/proton symporter	NA	NA	NA	NA
WP_001062140.1\|765878_767033_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.5e-130	63.9
WP_001803086.1\|767088_767388_+	hypothetical protein	NA	NA	NA	NA
WP_077905074.1\|767384_767549_-	hypothetical protein	NA	NA	NA	NA
WP_000729109.1\|767682_767814_+	acid stress response protein YqgB	NA	NA	NA	NA
WP_001278580.1\|767822_769799_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_000105550.1\|770026_770947_+	agmatinase	NA	NA	NA	NA
WP_000701830.1\|771047_771806_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_000098658.1\|772081_774073_+	transketolase	NA	NA	NA	NA
WP_000502119.1\|774261_774720_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1047071 : 1113062

Salmonella_phage(41.18%)

tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000047238.1\|1047071_1049702_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.5e-79	38.3
WP_000906486.1\|1049936_1050122_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_000271285.1\|1051520_1052087_+	fructose-1-phosphate/6-phosphogluconate phosphatase	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	1.6e-13	27.6
WP_001279499.1\|1052083_1052509_+	DedA family protein	NA	NA	NA	NA
WP_000611827.1\|1052585_1054142_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_001130194.1\|1054291_1054807_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_000645128.1\|1055152_1056523_+	carbohydrate porin	NA	NA	NA	NA
WP_001187289.1\|1056571_1058110_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_001275597.1\|1058126_1059299_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_000378431.1\|1059425_1059956_-	transcriptional repressor MprA	NA	NA	NA	NA
WP_000165770.1\|1060452_1061637_-	MFS transporter	NA	NA	NA	NA
WP_001216613.1\|1061801_1062797_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_000775015.1\|1062866_1063931_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA
WP_000777898.1\|1065479_1066439_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0M4S3B4	Mycobacterium_phage	4.0e-129	71.8
WP_000201426.1\|1066449_1068594_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	3.5e-194	49.0
WP_001275403.1\|1068566_1068977_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	4.3e-16	41.8
WP_000028873.1\|1068973_1069219_-	glutaredoxin-like protein NrdH	NA	NA	NA	NA
WP_000209805.1\|1069490_1069922_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_001519557.1\|1071428_1071755_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_000281304.1\|1071916_1072267_+	YgaC family protein	NA	NA	NA	NA
WP_000492647.1\|1072301_1072751_-	L-alanine exporter AlaE	NA	NA	NA	NA
WP_001051100.1\|1073449_1073851_+	DNA-binding protein StpA	NA	NA	NA	NA
WP_000022010.1\|1074199_1074727_-	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_000137417.1\|1074736_1075036_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000508175.1\|1075218_1075377_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_000126152.1\|1075947_1076625_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA
WP_000531291.1\|1076666_1078067_-	GABA permease	NA	NA	NA	NA
WP_001095643.1\|1078196_1079480_-	4-aminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	1.2e-32	31.4
WP_001176534.1\|1079494_1080943_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000271916.1\|1080964_1082233_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_000993092.1\|1082258_1083236_-	carbon starvation induced protein CsiD	NA	NA	NA	NA
WP_000382024.1\|1083538_1085053_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_001574835.1\|1085063_1085498_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_000744418.1\|1085509_1086319_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_001237936.1\|1086473_1087148_+	transcriptional regulator TctD	NA	NA	NA	NA
WP_000872343.1\|1087134_1088550_+	sensor histidine kinase	NA	NA	NA	NA
WP_000947097.1\|1088790_1089696_+	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA
WP_000701509.1\|1090417_1091314_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
WP_000178741.1\|1091607_1092537_-	VirK family antimicrobial peptide resistance protein	NA	NA	NA	NA
WP_001801692.1\|1093053_1094106_+	SPI-2 type III secretion system effector PipB2	NA	NA	NA	NA
WP_001682025.1\|1095127_1097308_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_000274373.1\|1097367_1098285_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001239947.1\|1098316_1099561_-	esterase family protein	NA	NA	NA	NA
WP_001111827.1\|1099670_1103327_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.0e-44	28.6
WP_001221113.1\|1103407_1104523_-	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
WP_000905046.1\|1105206_1105773_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
WP_000046142.1\|1105915_1107088_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
WP_001207656.1\|1107097_1107613_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
WP_001280897.1\|1107667_1107970_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
WP_000763311.1\|1107984_1108104_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001282796.1\|1108096_1111174_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
WP_000980381.1\|1111170_1111656_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
WP_001011760.1\|1111652_1112753_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
WP_000972389.1\|1112843_1113062_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	1.9e-18	71.9

DBSCAN-SWA_3

1799645 : 1806957

Dickeya_phage(16.67%)

integrase,protease

attL 1800896:1800910|attR 1812075:1812089

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201759.1\|1799645_1800764_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8
WP_000125880.1\|1800760_1802707_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
1800896:1800910	attL	NA	NA	NA	NA
WP_000447499.1\|1802836_1803058_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|1803381_1803702_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934058.1\|1803732_1806009_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-164	42.2
WP_001117984.1\|1806220_1806418_-	hypothetical protein	NA	NA	NA	NA
WP_001539594.1\|1806579_1806957_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
1812075:1812089	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1878082 : 1920141

Salmonella_phage(78.18%)

head,tail,terminase,holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001262313.1\|1878082_1879375_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	5.0e-252	99.8
WP_000065276.1\|1879419_1879668_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001754984.1\|1879708_1879948_-	DUF4060 family protein	S4TR31	Salmonella_phage	9.7e-37	96.2
WP_010989138.1\|1879953_1880835_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4R347	Salmonella_phage	1.2e-153	93.0
WP_000034527.1\|1880831_1881896_-	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	6.3e-152	74.6
WP_000187053.1\|1881973_1882654_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.9e-130	98.7
WP_001764962.1\|1882650_1883436_-	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	9.7e-150	99.6
WP_000995349.1\|1883441_1883738_-	host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	4.4e-47	96.9
WP_000186242.1\|1883828_1884029_-	cell division protein FtsZ	G8C7T2	Escherichia_phage	2.4e-12	48.4
WP_001009036.1\|1884317_1884722_-	transcriptional regulator	H6WRX4	Salmonella_phage	7.1e-72	99.3
WP_000869365.1\|1884851_1885088_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.1e-37	98.7
WP_001574095.1\|1885053_1885428_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_001681803.1\|1885512_1886496_+	replication protein	H6WRX7	Salmonella_phage	2.1e-162	99.7
WP_000800010.1\|1886498_1887248_+	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_000113623.1\|1887258_1887606_+	DUF977 family protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
WP_000065105.1\|1887602_1888127_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
WP_000445792.1\|1888126_1888600_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
WP_000208074.1\|1888603_1889176_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.3e-66	68.0
WP_000509711.1\|1890021_1890201_+	hypothetical protein	NA	NA	NA	NA
WP_000963896.1\|1890211_1890709_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_001217670.1\|1890893_1891133_+	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
WP_001804676.1\|1891188_1891428_+	hypothetical protein	H6WRY6	Salmonella_phage	5.9e-42	100.0
WP_000929790.1\|1891467_1892070_+	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_001096560.1\|1892278_1892890_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.5e-92	99.5
WP_001617856.1\|1892886_1893033_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001047634.1\|1893022_1893820_+	antitermination protein	A0A0M4S661	Salmonella_phage	3.4e-150	99.2
WP_001534733.1\|1894218_1894344_+	hypothetical protein	NA	NA	NA	NA
WP_000798706.1\|1894479_1894929_-	lipoprotein	NA	NA	NA	NA
WP_001294876.1\|1895145_1895535_+\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	3.1e-40	70.2
WP_000226307.1\|1895521_1895803_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
WP_001075998.1\|1895802_1896417_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	3.2e-108	93.1
WP_001050879.1\|1896413_1896953_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.5e-08	38.4
WP_000495544.1\|1896995_1897373_+	hypothetical protein	Q6UAR9	Klebsiella_phage	4.9e-43	68.5
WP_001070544.1\|1897469_1897697_+	hypothetical protein	NA	NA	NA	NA
WP_001118118.1\|1897786_1898539_+	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	3.4e-11	56.5
WP_000204794.1\|1898504_1899908_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	6.5e-189	70.1
WP_000113511.1\|1899907_1901377_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.7e-280	99.2
WP_138010671.1\|1901261_1901999_+\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	7.8e-101	88.1
WP_000873182.1\|1902013_1903246_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.4e-227	99.0
WP_000128060.1\|1903250_1903748_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
WP_000627464.1\|1903759_1904701_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
WP_001040702.1\|1904742_1905111_+	hypothetical protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
WP_001125675.1\|1905076_1905484_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	7.1e-72	97.8
WP_000008737.1\|1905480_1906035_+	hypothetical protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
WP_001142488.1\|1906021_1906411_+	hypothetical protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	98.4
WP_000389379.1\|1906385_1906949_+	hypothetical protein	A0A0M4R331	Salmonella_phage	8.9e-81	75.3
WP_001135544.1\|1906952_1908098_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.2e-163	74.5
WP_000257259.1\|1908109_1908550_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	3.5e-56	74.7
WP_000389047.1\|1908553_1909006_+	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.9e-57	76.6
WP_000990867.1\|1909183_1911136_+	hypothetical protein	A0A0M4REK7	Salmonella_phage	1.8e-181	56.0
WP_000346974.1\|1911135_1911786_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.0e-56	60.6
WP_000388505.1\|1911789_1912092_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	57.0
WP_000042301.1\|1912094_1913126_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.2e-96	51.4
WP_000826019.1\|1913122_1913458_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.1e-20	52.2
WP_000050472.1\|1913652_1914384_+	hypothetical protein	NA	NA	NA	NA
WP_001144794.1\|1914383_1914812_+	hypothetical protein	NA	NA	NA	NA
WP_001685627.1\|1914870_1915626_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.1e-105	85.3
WP_001270647.1\|1915866_1916220_+	hypothetical protein	A0A0M4R339	Salmonella_phage	3.2e-60	98.3
WP_001197092.1\|1916220_1917420_+\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	8.5e-214	97.5
WP_000049938.1\|1917416_1918097_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	6.9e-128	98.7
WP_001681975.1\|1918096_1919608_+	hypothetical protein	S4TP62	Salmonella_phage	1.5e-111	59.4
WP_000421106.1\|1919622_1920141_+\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	1.7e-46	62.8

DBSCAN-SWA_5

2400514 : 2472142

Burkholderia_virus(42.11%)

integrase,tRNA,capsid,protease,tail,transposase,plate

attL 2390844:2390859|attR 2444747:2444762

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2390844:2390859	attL	NA	NA	NA	NA
WP_000502119.1\|2400514_2400973_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000431187.1\|2400929_2401112_-	hypothetical protein	NA	NA	NA	NA
WP_001766314.1\|2401505_2401757_+	acid shock protein	NA	NA	NA	NA
WP_000549642.1\|2402025_2402847_+\|protease	serine protease	NA	NA	NA	NA
WP_001183821.1\|2402881_2403211_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_000500278.1\|2403197_2403560_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_001118268.1\|2403976_2405011_+	AI-2E family transporter	NA	NA	NA	NA
WP_000014056.1\|2405185_2406574_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_001219360.1\|2406584_2408114_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_000769298.1\|2408640_2409585_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001281695.1\|2409766_2410156_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.5e-31	54.2
WP_001315282.1\|2410127_2410577_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	9.4e-25	46.6
WP_010989166.1\|2410569_2410785_-	hypothetical protein	NA	NA	NA	NA
WP_000631816.1\|2410774_2411005_-	hypothetical protein	NA	NA	NA	NA
WP_000131941.1\|2411001_2411685_-	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	2.6e-34	37.3
WP_153781233.1\|2411681_2411882_-	hypothetical protein	NA	NA	NA	NA
WP_001315283.1\|2411889_2412273_-	hypothetical protein	K7PJQ4	Enterobacteria_phage	2.3e-27	58.9
WP_000197790.1\|2412269_2412572_-	hypothetical protein	NA	NA	NA	NA
WP_000632575.1\|2412581_2412854_-	hypothetical protein	NA	NA	NA	NA
WP_001140134.1\|2413142_2413673_-	host-nuclease inhibitor Gam family protein	L7P7T1	Pseudomonas_phage	3.4e-58	66.1
WP_000843446.1\|2413700_2413970_-	hypothetical protein	NA	NA	NA	NA
WP_000960673.1\|2413972_2415139_-	AAA family ATPase	A4JWN1	Burkholderia_virus	3.3e-122	59.7
WP_000990529.1\|2415149_2416919_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	2.8e-229	68.5
WP_000567456.1\|2416922_2417087_-	hypothetical protein	NA	NA	NA	NA
WP_144079282.1\|2417096_2417480_-	hypothetical protein	A4JWN3	Burkholderia_virus	1.7e-27	58.9
WP_065304567.1\|2417523_2418516_+	nucleoid-associated protein	A0A291AUQ0	Sinorhizobium_phage	3.0e-55	37.3
WP_000793143.1\|2418759_2419110_+	membrane protein	A4JWP3	Burkholderia_virus	4.5e-22	53.0
WP_001104436.1\|2419112_2419841_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.7e-61	57.4
WP_000264664.1\|2419824_2420475_+	lipoprotein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
WP_000175097.1\|2420471_2420798_+	membrane protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
WP_000227700.1\|2420797_2421109_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000124060.1\|2421108_2421654_+	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
WP_170825686.1\|2421704_2423246_+	hypothetical protein	A4JWJ4	Burkholderia_virus	9.0e-184	62.6
WP_000090679.1\|2423245_2424742_+	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	8.0e-169	59.6
WP_000117561.1\|2424722_2425544_+\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	5.3e-98	61.2
WP_000135517.1\|2425546_2426005_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	1.5e-30	44.8
WP_001273072.1\|2426219_2427335_+	hypothetical protein	A4JWJ9	Burkholderia_virus	7.9e-97	51.1
WP_001286905.1\|2427349_2428303_+	hypothetical protein	A4JWK0	Burkholderia_virus	5.2e-65	44.5
WP_000537457.1\|2428312_2428651_+	DUF2190 family protein	NA	NA	NA	NA
WP_000271668.1\|2428652_2429099_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_001101804.1\|2429098_2429563_+	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_000666498.1\|2429562_2429814_+	hypothetical protein	NA	NA	NA	NA
WP_000729859.1\|2429803_2431231_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	3.7e-216	77.4
WP_162828734.1\|2431227_2431752_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	4.7e-68	67.2
WP_000110118.1\|2431754_2432036_+	hypothetical protein	NA	NA	NA	NA
WP_000084228.1\|2432133_2432469_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001148841.1\|2432413_2432551_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000135574.1\|2432644_2435110_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.2e-168	42.6
WP_000458383.1\|2435109_2435994_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	7.5e-50	47.0
WP_000478221.1\|2435993_2436206_+\|tail	tail protein X	Q6QIA3	Burkholderia_phage	2.4e-18	60.0
WP_000808000.1\|2436193_2437348_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	4.7e-84	47.1
WP_000148263.1\|2437344_2437872_+\|plate	phage baseplate assembly protein V	Q6QIA1	Burkholderia_phage	1.5e-21	46.5
WP_000859114.1\|2437928_2438276_+	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	8.6e-34	60.6
WP_001219103.1\|2438266_2439370_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	5.4e-106	54.3
WP_000852585.1\|2439362_2439941_+\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	3.2e-65	65.3
WP_024134057.1\|2440711_2441173_-\|tail	tail fiber protein	K7P7Q7	Enterobacteria_phage	5.9e-38	53.9
WP_001165548.1\|2441244_2441817_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	8.8e-84	84.7
WP_000412353.1\|2442097_2443480_+	amino acid permease	NA	NA	NA	NA
WP_000524877.1\|2443541_2443877_-	GlpM family protein	NA	NA	NA	NA
WP_001080045.1\|2444003_2444735_+	two-component system response regulator RstA	NA	NA	NA	NA
WP_000824321.1\|2445215_2446367_+	porin OmpS2	Q1MVN1	Enterobacteria_phage	3.2e-117	59.1
2444747:2444762	attR	NA	NA	NA	NA
WP_000928668.1\|2446519_2448226_+	amidohydrolase	NA	NA	NA	NA
WP_001681605.1\|2448336_2449638_+	two-component system sensor histidine kinase RstB	W8CYF6	Bacillus_phage	5.7e-14	22.7
WP_000092483.1\|2449713_2450643_+	DNA replication terminus site-binding protein	NA	NA	NA	NA
WP_000259129.1\|2450639_2452043_-	class II fumarate hydratase	NA	NA	NA	NA
WP_000066606.1\|2452210_2453857_-	class I fumarate hydratase	NA	NA	NA	NA
WP_001170615.1\|2454056_2455232_+	mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_000753325.1\|2455334_2456843_+	YdgA family protein	NA	NA	NA	NA
WP_000565566.1\|2457548_2458550_+	adenosine deaminase	NA	NA	NA	NA
WP_000998242.1\|2458623_2459664_-	oxidoreductase	NA	NA	NA	NA
WP_031608772.1\|2459871_2459997_+	division septum protein Blr	NA	NA	NA	NA
WP_000217946.1\|2460295_2460511_+	transcription modulator YdgT	NA	NA	NA	NA
WP_000214061.1\|2460599_2461040_+	DUF2569 domain-containing protein	NA	NA	NA	NA
WP_000133179.1\|2461116_2461698_+	electron transport complex subunit RsxA	NA	NA	NA	NA
WP_001092600.1\|2461697_2462276_+	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_000915581.1\|2462268_2464290_+	electron transport complex subunit RsxC	NA	NA	NA	NA
WP_000231887.1\|2464290_2465349_+	electron transport complex subunit RsxD	NA	NA	NA	NA
WP_000920820.1\|2465352_2465973_+	electron transport complex subunit RsxG	NA	NA	NA	NA
WP_001289628.1\|2465975_2466668_+	electron transport complex subunit E	NA	NA	NA	NA
WP_001030324.1\|2466667_2467303_+	endonuclease III	NA	NA	NA	NA
WP_000100913.1\|2467903_2469409_+	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA
WP_000765713.1\|2469513_2470119_+	glutathione transferase GstA	NA	NA	NA	NA
WP_000168626.1\|2470867_2472142_-\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	1.6e-85	42.1

DBSCAN-SWA_6

2653188 : 2657600

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000497451.1\|2653188_2653428_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
WP_001036668.1\|2653639_2653804_-	hypothetical protein	NA	NA	NA	NA
WP_001529135.1\|2654300_2655110_+	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	2.1e-62	50.0
WP_001277616.1\|2655182_2655560_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_000158843.1\|2655707_2656250_-	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_001766395.1\|2656441_2657170_-	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.9e-63	53.3
WP_000281950.1\|2657186_2657600_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6

DBSCAN-SWA_7

2861485 : 2868719

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157299.1\|2861485_2862916_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_000377043.1\|2862989_2863685_-	phosphohydrolase	S4W232	Pandoravirus	2.1e-07	27.5
WP_000107435.1\|2863764_2864076_-	hypothetical protein	NA	NA	NA	NA
WP_001080666.1\|2864726_2865911_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.4e-107	56.4
WP_024131163.1\|2866171_2866360_-	hypothetical protein	NA	NA	NA	NA
WP_000208507.1\|2866370_2866583_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.5e-20	70.0
WP_000457648.1\|2867028_2868297_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.3e-224	91.2
WP_000394197.1\|2868299_2868719_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_8

2976258 : 2986765

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126347.1\|2976258_2977572_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565909.1\|2977598_2978678_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.1
WP_000648783.1\|2978682_2979456_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018220.1\|2979471_2980446_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973711.1\|2980451_2981003_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
WP_024135283.1\|2981003_2981882_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
WP_001023656.1\|2981929_2982829_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.9e-31	36.3
WP_000697846.1\|2982828_2983914_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_000981469.1\|2984290_2985184_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001111852.1\|2985361_2986765_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-21	26.5

DBSCAN-SWA_9

3062657 : 3071828

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195338.1\|3062657_3064691_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
WP_000703137.1\|3064931_3065390_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001197951.1\|3065561_3066092_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|3066148_3066616_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598633.1\|3066662_3067382_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001785994.1\|3067378_3069064_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.9e-278	90.9
WP_001240415.1\|3069286_3070018_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|3070077_3070185_+	protein YohO	NA	NA	NA	NA
WP_000824854.1\|3070165_3070897_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|3070880_3071828_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_10

4129743 : 4208676

Salmonella_phage(83.33%)

plate,integrase,capsid,lysis,terminase,tail,portal,head

attL 4136896:4136911|attR 4209770:4209785

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000954536.1\|4129743_4131003_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.2e-78	41.7
WP_000975154.1\|4131313_4132597_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_000511749.1\|4133577_4134360_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_162009227.1\|4134629_4134824_+	hypothetical protein	NA	NA	NA	NA
WP_000193665.1\|4135216_4135438_-	helix-turn-helix domain-containing protein	A0A2I7S995	Vibrio_phage	4.6e-17	58.3
WP_000246267.1\|4135434_4135896_-	hypothetical protein	NA	NA	NA	NA
WP_010989301.1\|4136442_4138116_+	hypothetical protein	NA	NA	NA	NA
4136896:4136911	attL	NA	NA	NA	NA
WP_010989300.1\|4138196_4140482_+	hypothetical protein	NA	NA	NA	NA
WP_024131240.1\|4140785_4141037_+	hypothetical protein	NA	NA	NA	NA
WP_000434168.1\|4141118_4141571_+	hypothetical protein	NA	NA	NA	NA
WP_000622308.1\|4141750_4142239_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001143724.1\|4142235_4142529_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_000449622.1\|4142955_4143969_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_000488995.1\|4144132_4145722_-	TraI domain-containing protein	NA	NA	NA	NA
WP_001120833.1\|4145705_4147217_-	ATP-dependent helicase	A0A126DN25	Acinetobacter_phage	2.0e-42	29.0
WP_001210944.1\|4148070_4148610_+	Vi polysaccharide biosynthesis regulator TviA	NA	NA	NA	NA
WP_000466893.1\|4148854_4150132_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	M1HYW7	Paramecium_bursaria_Chlorella_virus	1.3e-21	26.7
WP_000127915.1\|4150134_4151181_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	A0A2K9L0I7	Tupanvirus	1.4e-74	45.0
WP_072073205.1\|4151204_4153700_+	Vi polysaccharide biosynthesis protein TviD	NA	NA	NA	NA
WP_000632616.1\|4153699_4155436_+	Vi polysaccharide biosynthesis glycosyltransferase TviE	NA	NA	NA	NA
WP_000720235.1\|4155480_4156548_+	Vi polysaccharide ABC transporter protein VexA	NA	NA	NA	NA
WP_001023498.1\|4156557_4157352_+	Vi polysaccharide ABC transporter inner membrane protein VexB	NA	NA	NA	NA
WP_000467404.1\|4157377_4158073_+	Vi polysaccharide ABC transporter ATP-binding protein VexC	NA	NA	NA	NA
WP_000431675.1\|4158095_4159400_+	Vi polysaccharide ABC transporter inner membrane protein VexD	NA	NA	NA	NA
WP_000052242.1\|4159419_4161390_+	Vi polysaccharide transport protein VexE	NA	NA	NA	NA
WP_000354257.1\|4161691_4162438_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001681808.1\|4162437_4163328_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_001681810.1\|4163338_4163596_-	YjhX family toxin	NA	NA	NA	NA
WP_000027757.1\|4164702_4165728_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.7e-200	98.2
WP_000052560.1\|4165731_4166364_-	helix-turn-helix domain-containing protein	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
WP_000102106.1\|4166480_4166723_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
WP_000460852.1\|4166755_4167265_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.3e-83	94.1
WP_000956167.1\|4167272_4167473_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.6e-32	97.0
WP_000963479.1\|4167436_4167778_+	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	4.6e-56	99.1
WP_001244240.1\|4167845_4168079_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	9.8e-26	84.4
WP_000785510.1\|4168078_4168306_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.0e-35	94.7
WP_001090717.1\|4168302_4168887_+	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	1.1e-76	73.7
WP_000104130.1\|4168883_4169744_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.4e-132	81.8
WP_001690689.1\|4169734_4172137_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	95.4
WP_001154438.1\|4172304_4172493_+	hypothetical protein	A0A1S6L006	Salmonella_phage	7.9e-26	96.8
WP_001217561.1\|4172504_4172738_+	DinI family protein	A0A1S6L014	Salmonella_phage	2.2e-33	92.2
WP_000835188.1\|4172833_4173052_+	hypothetical protein	NA	NA	NA	NA
WP_000829584.1\|4173061_4174126_+	hypothetical protein	NA	NA	NA	NA
WP_000789323.1\|4174122_4175187_+	hypothetical protein	NA	NA	NA	NA
WP_000080839.1\|4175206_4175902_+	hypothetical protein	NA	NA	NA	NA
WP_001681813.1\|4175950_4176994_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.1e-176	86.6
WP_001098453.1\|4176993_4178760_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.4
WP_000216272.1\|4178902_4179736_+\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	6.1e-126	87.4
WP_000730751.1\|4179752_4180817_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.3e-194	98.3
WP_000059175.1\|4180820_4181471_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	2.4e-114	99.5
WP_000673540.1\|4181564_4182029_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	2.4e-84	98.1
WP_000868184.1\|4182028_4182232_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000171566.1\|4182235_4182451_+	hypothetical protein	E5G6N0	Salmonella_phage	3.8e-32	98.6
WP_001097942.1\|4182431_4182941_+	lysozyme	A0A1S6KZY9	Salmonella_phage	1.3e-91	97.0
WP_000731034.1\|4182945_4183323_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.5e-60	99.2
WP_024131238.1\|4183319_4183748_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	3.3e-67	97.9
WP_001039961.1\|4183843_4184275_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.1e-75	99.3
WP_048667705.1\|4184267_4184714_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-66	89.7
WP_048667703.1\|4184782_4185361_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.4e-107	98.4
WP_000177408.1\|4185357_4185717_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	6.8e-58	96.6
WP_000268327.1\|4185703_4186612_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.2e-155	97.0
WP_001086816.1\|4186604_4187210_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
WP_000104806.1\|4187206_4188826_+\|tail	phage tail protein	E5G6P0	Salmonella_phage	2.7e-154	90.9
WP_000006337.1\|4188832_4189240_+\|tail	tail fiber assembly protein	A0A1B0V844	Salmonella_phage	4.1e-59	84.2
WP_000161708.1\|4189437_4190160_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_000388790.1\|4190373_4190592_+	Hin recombinase	A0A1S6L009	Salmonella_phage	1.4e-29	90.3
WP_000046101.1\|4190694_4191867_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.8e-223	99.5
WP_001207653.1\|4191876_4192392_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
WP_001280965.1\|4192446_4192749_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
WP_000763315.1\|4192763_4192883_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
WP_161976233.1\|4193109_4195656_+\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	1.2e-113	42.7
WP_000980405.1\|4195655_4196141_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-71	93.2
WP_001011750.1\|4196137_4197238_+	phage late control D family protein	E5G6Q3	Salmonella_phage	7.9e-190	92.1
WP_001775272.1\|4197305_4197524_+	ogr/Delta-like zinc finger family protein	E5G6Q4	Salmonella_phage	4.9e-27	75.0
WP_001039750.1\|4197610_4197988_-	hypothetical protein	NA	NA	NA	NA
WP_000457555.1\|4198207_4199482_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	7.5e-152	62.0
WP_001222413.1\|4199613_4199883_+	hypothetical protein	NA	NA	NA	NA
WP_000911568.1\|4199982_4200309_-	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_000022217.1\|4200383_4201283_-	hypothetical protein	NA	NA	NA	NA
WP_000881183.1\|4201356_4202265_-	hypothetical protein	NA	NA	NA	NA
WP_001097965.1\|4202336_4204286_-	DUF1738 domain-containing protein	A0A2K9V411	Faecalibacterium_phage	5.9e-31	38.3
WP_000115421.1\|4204374_4204833_-	hypothetical protein	NA	NA	NA	NA
WP_000968700.1\|4204910_4205207_-	hypothetical protein	NA	NA	NA	NA
WP_000979718.1\|4205203_4205656_-	hypothetical protein	NA	NA	NA	NA
WP_000018145.1\|4205673_4205883_-	hypothetical protein	NA	NA	NA	NA
WP_001103837.1\|4206253_4206634_-	hypothetical protein	NA	NA	NA	NA
WP_001020123.1\|4206729_4207032_-	hypothetical protein	NA	NA	NA	NA
WP_000907593.1\|4207755_4208676_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
4209770:4209785	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4504046 : 4542102

Salmonella_phage(80.49%)

plate,integrase,capsid,lysis,terminase,tail,portal,transposase,head

attL 4499010:4499024|attR 4511176:4511190

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4499010:4499024	attL	NA	NA	NA	NA
WP_001012560.1\|4504046_4505693_-	acetolactate synthase 2 catalytic subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	9.0e-65	31.5
WP_001311244.1\|4505832_4505931_-	ilv operon leader peptide	NA	NA	NA	NA
WP_000290950.1\|4506556_4507609_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
WP_000900883.1\|4507797_4507989_-	hypothetical protein	A0A0R6PIH8	Moraxella_phage	6.8e-09	65.9
WP_001047327.1\|4508004_4508574_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	2.5e-38	43.4
WP_001247706.1\|4508699_4508921_+	hypothetical protein	NA	NA	NA	NA
WP_000460893.1\|4508953_4509463_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000956176.1\|4509470_4509767_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	4.9e-22	90.4
WP_000996717.1\|4509884_4510226_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
WP_001244218.1\|4510293_4510527_+	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	2.0e-31	94.8
WP_000752613.1\|4510526_4510754_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
WP_000104152.1\|4510750_4511608_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.5e-161	97.2
4511176:4511190	attR	NA	NA	NA	NA
WP_000017503.1\|4511604_4514019_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_001580533.1\|4514172_4514361_+	hypothetical protein	E5G6M0	Salmonella_phage	7.9e-26	95.2
WP_000822803.1\|4514428_4514728_-	hypothetical protein	NA	NA	NA	NA
WP_001251692.1\|4514836_4515715_-	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	6.1e-52	49.4
WP_001146827.1\|4516328_4517243_+	hypothetical protein	NA	NA	NA	NA
WP_000185757.1\|4517239_4517980_+	restriction endonuclease	NA	NA	NA	NA
WP_000518064.1\|4518014_4519052_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.3e-173	89.5
WP_001098422.1\|4519051_4520818_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_000216264.1\|4520960_4521794_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.5e-121	90.6
WP_000742518.1\|4521810_4522869_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.4e-180	93.1
WP_000059191.1\|4522872_4523523_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_000673504.1\|4523618_4524083_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.4e-76	89.0
WP_000868175.1\|4524082_4524286_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000171568.1\|4524289_4524505_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_001069905.1\|4524485_4524998_+	lysozyme	E5G6N1	Salmonella_phage	3.1e-88	92.3
WP_000727853.1\|4524999_4525377_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.3e-16	40.0
WP_001080928.1\|4525373_4525802_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.2e-47	77.3
WP_001039939.1\|4525897_4526329_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-72	95.1
WP_000829146.1\|4526321_4526768_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
WP_000993754.1\|4526836_4527415_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	5.5e-94	86.5
WP_000177595.1\|4527411_4527771_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	6.1e-51	84.9
WP_000268271.1\|4527757_4528666_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.3e-142	89.7
WP_001086816.1\|4528658_4529264_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
WP_000805568.1\|4530772_4531366_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	9.2e-60	64.3
WP_001174915.1\|4531337_4531778_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	3.1e-52	68.0
WP_000905046.1\|4532206_4532773_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
WP_000046142.1\|4532915_4534088_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
WP_001207656.1\|4534097_4534613_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
WP_001280897.1\|4534667_4534970_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
WP_000763311.1\|4534984_4535104_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001282796.1\|4535096_4538174_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
WP_000980381.1\|4538170_4538656_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
WP_001011760.1\|4538652_4539753_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
WP_000972391.1\|4539843_4540062_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_000502114.1\|4541643_4542102_+\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT904854

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection