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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011526 Staphylococcus aureus subsp. aureus DSM 20231 chromosome, complete genome 12 crisprs cas3,DEDDh,DinG,csa3,WYL 9 5 8 0
NZ_CP011527 Staphylococcus aureus subsp. aureus DSM 20231 plasmid unnamed, complete sequence 0 crisprs csa3 0 0 1 0

Results visualization

1. NZ_CP011526
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011526_1 379131-379231 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011526_2 624035-624127 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011526_3 687020-687118 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011526_4 780972-781052 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011526_5 786370-786455 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011526_6 829508-829589 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011526_7 922541-922823 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011526_8 1056225-1056312 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011526_9 1140598-1140784 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011526_10 1795198-1795424 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011526_11 1952056-1952134 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011526_12 2146182-2146332 Orphan NA
2 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP011526_4 4.1|780998|29|NZ_CP011526|CRISPRCasFinder 780998-781026 29 NZ_CP011526.1 2712625-2712653 0 1.0
NZ_CP011526_6 6.1|829532|34|NZ_CP011526|CRISPRCasFinder 829532-829565 34 NZ_CP011526.1 1348926-1348959 0 1.0
NZ_CP011526_6 6.1|829532|34|NZ_CP011526|CRISPRCasFinder 829532-829565 34 NZ_CP011526.1 1437274-1437307 0 1.0
NZ_CP011526_9 9.1|1140617|37|NZ_CP011526|CRT 1140617-1140653 37 NZ_CP011526.1 2270365-2270401 0 1.0
NZ_CP011526_9 9.2|1140673|37|NZ_CP011526|CRT 1140673-1140709 37 NZ_CP011526.1 340535-340571 0 1.0
NZ_CP011526_9 9.2|1140673|37|NZ_CP011526|CRT 1140673-1140709 37 NZ_CP011526.1 786428-786464 0 1.0
NZ_CP011526_9 9.2|1140673|37|NZ_CP011526|CRT 1140673-1140709 37 NZ_CP011526.1 1039936-1039972 0 1.0
NZ_CP011526_9 9.2|1140673|37|NZ_CP011526|CRT 1140673-1140709 37 NZ_CP011526.1 1348885-1348921 0 1.0
NZ_CP011526_9 9.3|1140729|37|NZ_CP011526|CRT 1140729-1140765 37 NZ_CP011526.1 114614-114650 0 1.0
NZ_CP011526_9 9.3|1140729|37|NZ_CP011526|CRT 1140729-1140765 37 NZ_CP011526.1 623073-623109 0 1.0
NZ_CP011526_9 9.3|1140729|37|NZ_CP011526|CRT 1140729-1140765 37 NZ_CP011526.1 738994-739030 0 1.0
NZ_CP011526_9 9.3|1140729|37|NZ_CP011526|CRT 1140729-1140765 37 NZ_CP011526.1 786484-786520 0 1.0
NZ_CP011526_9 9.3|1140729|37|NZ_CP011526|CRT 1140729-1140765 37 NZ_CP011526.1 1348943-1348979 0 1.0
NZ_CP011526_9 9.3|1140729|37|NZ_CP011526|CRT 1140729-1140765 37 NZ_CP011526.1 1437254-1437290 0 1.0
NZ_CP011526_9 9.3|1140729|37|NZ_CP011526|CRT 1140729-1140765 37 NZ_CP011526.1 1953528-1953564 0 1.0
NZ_CP011526_9 9.3|1140729|37|NZ_CP011526|CRT 1140729-1140765 37 NZ_CP011526.1 1953587-1953623 0 1.0
NZ_CP011526_4 4.1|780998|29|NZ_CP011526|CRISPRCasFinder 780998-781026 29 NZ_CP011526.1 340652-340680 1 0.966
NZ_CP011526_4 4.1|780998|29|NZ_CP011526|CRISPRCasFinder 780998-781026 29 NZ_CP011526.1 1795161-1795189 1 0.966
NZ_CP011526_5 5.1|786400|26|NZ_CP011526|CRISPRCasFinder 786400-786425 26 NZ_CP011526.1 749392-749417 1 0.962
NZ_CP011526_5 5.1|786400|26|NZ_CP011526|CRISPRCasFinder 786400-786425 26 NZ_CP011526.1 1140768-1140793 1 0.962
NZ_CP011526_5 5.1|786400|26|NZ_CP011526|CRISPRCasFinder 786400-786425 26 NZ_CP011526.1 2712537-2712562 1 0.962
NZ_CP011526_5 5.1|786400|26|NZ_CP011526|CRISPRCasFinder 786400-786425 26 NZ_CP011526.1 2712593-2712618 1 0.962
NZ_CP011526_7 7.1|922571|26|NZ_CP011526|CRT 922571-922596 26 NZ_CP011526.1 922515-922540 1 0.962
NZ_CP011526_7 7.3|922685|26|NZ_CP011526|CRT 922685-922710 26 NZ_CP011526.1 786456-786481 1 0.962
NZ_CP011526_9 9.1|1140617|37|NZ_CP011526|CRT 1140617-1140653 37 NZ_CP011526.1 1795158-1795194 1 0.973
NZ_CP011526_9 9.2|1140673|37|NZ_CP011526|CRT 1140673-1140709 37 NZ_CP011526.1 1437312-1437348 1 0.973
NZ_CP011526_9 9.2|1140673|37|NZ_CP011526|CRT 1140673-1140709 37 NZ_CP011526.1 1617058-1617094 1 0.973
NZ_CP011526_9 9.2|1140673|37|NZ_CP011526|CRT 1140673-1140709 37 NZ_CP011526.1 2547253-2547289 1 0.973
NZ_CP011526_9 9.3|1140729|37|NZ_CP011526|CRT 1140729-1140765 37 NZ_CP011526.1 1066133-1066169 1 0.973
NZ_CP011526_9 9.3|1140729|37|NZ_CP011526|CRT 1140729-1140765 37 NZ_CP011526.1 2436792-2436828 1 0.973
NZ_CP011526_11 11.1|1952079|33|NZ_CP011526|CRISPRCasFinder 1952079-1952111 33 NZ_CP011526.1 786436-786468 1 0.97
NZ_CP011526_11 11.1|1952079|33|NZ_CP011526|CRISPRCasFinder 1952079-1952111 33 NZ_CP011526.1 1348881-1348913 1 0.97
NZ_CP011526_11 11.1|1952079|33|NZ_CP011526|CRISPRCasFinder 1952079-1952111 33 NZ_CP011526.1 1617066-1617098 1 0.97
NZ_CP011526_11 11.1|1952079|33|NZ_CP011526|CRISPRCasFinder 1952079-1952111 33 NZ_CP011526.1 2547261-2547293 1 0.97
NZ_CP011526_4 4.1|780998|29|NZ_CP011526|CRISPRCasFinder 780998-781026 29 NZ_CP011526.1 829574-829602 2 0.931
NZ_CP011526_4 4.1|780998|29|NZ_CP011526|CRISPRCasFinder 780998-781026 29 NZ_CP011526.1 942210-942238 2 0.931
NZ_CP011526_4 4.1|780998|29|NZ_CP011526|CRISPRCasFinder 780998-781026 29 NZ_CP011526.1 1617005-1617033 2 0.931
NZ_CP011526_4 4.1|780998|29|NZ_CP011526|CRISPRCasFinder 780998-781026 29 NZ_CP011526.1 1962882-1962910 2 0.931
NZ_CP011526_4 4.1|780998|29|NZ_CP011526|CRISPRCasFinder 780998-781026 29 NZ_CP011526.1 2270370-2270398 2 0.931
NZ_CP011526_4 4.1|780998|29|NZ_CP011526|CRISPRCasFinder 780998-781026 29 NZ_CP011526.1 2462079-2462107 2 0.931
NZ_CP011526_5 5.1|786400|26|NZ_CP011526|CRISPRCasFinder 786400-786425 26 NZ_CP011526.1 749448-749473 2 0.923
NZ_CP011526_5 5.1|786400|26|NZ_CP011526|CRISPRCasFinder 786400-786425 26 NZ_CP011526.1 922515-922540 2 0.923
NZ_CP011526_7 7.1|922571|26|NZ_CP011526|CRT 922571-922596 26 NZ_CP011526.1 749392-749417 2 0.923
NZ_CP011526_7 7.1|922571|26|NZ_CP011526|CRT 922571-922596 26 NZ_CP011526.1 1140768-1140793 2 0.923
NZ_CP011526_7 7.1|922571|26|NZ_CP011526|CRT 922571-922596 26 NZ_CP011526.1 2712537-2712562 2 0.923
NZ_CP011526_7 7.1|922571|26|NZ_CP011526|CRT 922571-922596 26 NZ_CP011526.1 2712593-2712618 2 0.923
NZ_CP011526_7 7.3|922685|26|NZ_CP011526|CRT 922685-922710 26 NZ_CP011526.1 340518-340543 2 0.923
NZ_CP011526_9 9.1|1140617|37|NZ_CP011526|CRT 1140617-1140653 37 NZ_CP011526.1 829569-829605 2 0.946
NZ_CP011526_9 9.1|1140617|37|NZ_CP011526|CRT 1140617-1140653 37 NZ_CP011526.1 1617000-1617036 2 0.946
NZ_CP011526_9 9.1|1140617|37|NZ_CP011526|CRT 1140617-1140653 37 NZ_CP011526.1 1962877-1962913 2 0.946
NZ_CP011526_9 9.1|1140617|37|NZ_CP011526|CRT 1140617-1140653 37 NZ_CP011526.1 2462076-2462112 2 0.946
NZ_CP011526_9 9.1|1140617|37|NZ_CP011526|CRT 1140617-1140653 37 NZ_CP011526.1 2712620-2712656 2 0.946
NZ_CP011526_9 9.2|1140673|37|NZ_CP011526|CRT 1140673-1140709 37 NZ_CP011526.1 1136705-1136741 2 0.946
NZ_CP011526_9 9.2|1140673|37|NZ_CP011526|CRT 1140673-1140709 37 NZ_CP011526.1 1140785-1140821 2 0.946
NZ_CP011526_9 9.2|1140673|37|NZ_CP011526|CRT 1140673-1140709 37 NZ_CP011526.1 2270421-2270457 2 0.946
NZ_CP011526_9 9.2|1140673|37|NZ_CP011526|CRT 1140673-1140709 37 NZ_CP011526.1 2712565-2712601 2 0.946
NZ_CP011526_9 9.3|1140729|37|NZ_CP011526|CRT 1140729-1140765 37 NZ_CP011526.1 1136761-1136797 2 0.946
NZ_CP011526_11 11.1|1952079|33|NZ_CP011526|CRISPRCasFinder 1952079-1952111 33 NZ_CP011526.1 1437320-1437352 2 0.939

1. spacer 4.1|780998|29|NZ_CP011526|CRISPRCasFinder matches to position: 2712625-2712653, mismatch: 0, identity: 1.0

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtagaatttcttttcgaaa	Protospacer
*****************************

2. spacer 6.1|829532|34|NZ_CP011526|CRISPRCasFinder matches to position: 1348926-1348959, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 6.1|829532|34|NZ_CP011526|CRISPRCasFinder matches to position: 1437274-1437307, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

4. spacer 9.1|1140617|37|NZ_CP011526|CRT matches to position: 2270365-2270401, mismatch: 0, identity: 1.0

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcaaaaagaaattctacagacaatgcaagttg	Protospacer
*************************************

5. spacer 9.2|1140673|37|NZ_CP011526|CRT matches to position: 340535-340571, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

6. spacer 9.2|1140673|37|NZ_CP011526|CRT matches to position: 786428-786464, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

7. spacer 9.2|1140673|37|NZ_CP011526|CRT matches to position: 1039936-1039972, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

8. spacer 9.2|1140673|37|NZ_CP011526|CRT matches to position: 1348885-1348921, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

9. spacer 9.3|1140729|37|NZ_CP011526|CRT matches to position: 114614-114650, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

10. spacer 9.3|1140729|37|NZ_CP011526|CRT matches to position: 623073-623109, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

11. spacer 9.3|1140729|37|NZ_CP011526|CRT matches to position: 738994-739030, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

12. spacer 9.3|1140729|37|NZ_CP011526|CRT matches to position: 786484-786520, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

13. spacer 9.3|1140729|37|NZ_CP011526|CRT matches to position: 1348943-1348979, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

14. spacer 9.3|1140729|37|NZ_CP011526|CRT matches to position: 1437254-1437290, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

15. spacer 9.3|1140729|37|NZ_CP011526|CRT matches to position: 1953528-1953564, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

16. spacer 9.3|1140729|37|NZ_CP011526|CRT matches to position: 1953587-1953623, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

17. spacer 4.1|780998|29|NZ_CP011526|CRISPRCasFinder matches to position: 340652-340680, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

18. spacer 4.1|780998|29|NZ_CP011526|CRISPRCasFinder matches to position: 1795161-1795189, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

19. spacer 5.1|786400|26|NZ_CP011526|CRISPRCasFinder matches to position: 749392-749417, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** ********************

20. spacer 5.1|786400|26|NZ_CP011526|CRISPRCasFinder matches to position: 1140768-1140793, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
************.*************

21. spacer 5.1|786400|26|NZ_CP011526|CRISPRCasFinder matches to position: 2712537-2712562, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
************.*************

22. spacer 5.1|786400|26|NZ_CP011526|CRISPRCasFinder matches to position: 2712593-2712618, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctttgttggggccccg	Protospacer
************ *************

23. spacer 7.1|922571|26|NZ_CP011526|CRT matches to position: 922515-922540, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

24. spacer 7.3|922685|26|NZ_CP011526|CRT matches to position: 786456-786481, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

25. spacer 9.1|1140617|37|NZ_CP011526|CRT matches to position: 1795158-1795194, mismatch: 1, identity: 0.973

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacagacaatgcaagttg	Protospacer
*******.*****************************

26. spacer 9.2|1140673|37|NZ_CP011526|CRT matches to position: 1437312-1437348, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agatgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
** **********************************

27. spacer 9.2|1140673|37|NZ_CP011526|CRT matches to position: 1617058-1617094, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttactataatgtgcaagtt	Protospacer
********************** **************

28. spacer 9.2|1140673|37|NZ_CP011526|CRT matches to position: 2547253-2547289, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcgagtt	Protospacer
********************************.****

29. spacer 9.3|1140729|37|NZ_CP011526|CRT matches to position: 1066133-1066169, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgtaagtt	Protospacer
*******************************.*****

30. spacer 9.3|1140729|37|NZ_CP011526|CRT matches to position: 2436792-2436828, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctagagacaatgcaagtt	Protospacer
********************** **************

31. spacer 11.1|1952079|33|NZ_CP011526|CRISPRCasFinder matches to position: 786436-786468, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

32. spacer 11.1|1952079|33|NZ_CP011526|CRISPRCasFinder matches to position: 1348881-1348913, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

33. spacer 11.1|1952079|33|NZ_CP011526|CRISPRCasFinder matches to position: 1617066-1617098, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattatagtaagctgacttttcgtcagcttctg	Protospacer
****** **************************

34. spacer 11.1|1952079|33|NZ_CP011526|CRISPRCasFinder matches to position: 2547261-2547293, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

35. spacer 4.1|780998|29|NZ_CP011526|CRISPRCasFinder matches to position: 829574-829602, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

36. spacer 4.1|780998|29|NZ_CP011526|CRISPRCasFinder matches to position: 942210-942238, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

37. spacer 4.1|780998|29|NZ_CP011526|CRISPRCasFinder matches to position: 1617005-1617033, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

38. spacer 4.1|780998|29|NZ_CP011526|CRISPRCasFinder matches to position: 1962882-1962910, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaa	Protospacer
********.***********.********

39. spacer 4.1|780998|29|NZ_CP011526|CRISPRCasFinder matches to position: 2270370-2270398, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttctttttgaaa	Protospacer
********.***************.****

40. spacer 4.1|780998|29|NZ_CP011526|CRISPRCasFinder matches to position: 2462079-2462107, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

41. spacer 5.1|786400|26|NZ_CP011526|CRISPRCasFinder matches to position: 749448-749473, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctatgttggggccccg	Protospacer
***** ******.*************

42. spacer 5.1|786400|26|NZ_CP011526|CRISPRCasFinder matches to position: 922515-922540, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccaccagcctctgtgttggggccccg	Protospacer
**.*****.*****************

43. spacer 7.1|922571|26|NZ_CP011526|CRT matches to position: 749392-749417, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

44. spacer 7.1|922571|26|NZ_CP011526|CRT matches to position: 1140768-1140793, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

45. spacer 7.1|922571|26|NZ_CP011526|CRT matches to position: 2712537-2712562, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

46. spacer 7.1|922571|26|NZ_CP011526|CRT matches to position: 2712593-2712618, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

47. spacer 7.3|922685|26|NZ_CP011526|CRT matches to position: 340518-340543, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

48. spacer 9.1|1140617|37|NZ_CP011526|CRT matches to position: 829569-829605, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

49. spacer 9.1|1140617|37|NZ_CP011526|CRT matches to position: 1617000-1617036, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

50. spacer 9.1|1140617|37|NZ_CP011526|CRT matches to position: 1962877-1962913, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaggaaattctacagacaatgcaagttg	Protospacer
*******.***.*************************

51. spacer 9.1|1140617|37|NZ_CP011526|CRT matches to position: 2462076-2462112, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

52. spacer 9.1|1140617|37|NZ_CP011526|CRT matches to position: 2712620-2712656, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaaacaatgcaagttg	Protospacer
*******.***************.*************

53. spacer 9.2|1140673|37|NZ_CP011526|CRT matches to position: 1136705-1136741, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcgaaaagtcagcttacaaaaatgtgcaagtt	Protospacer
*****.****************** ************

54. spacer 9.2|1140673|37|NZ_CP011526|CRT matches to position: 1140785-1140821, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

55. spacer 9.2|1140673|37|NZ_CP011526|CRT matches to position: 2270421-2270457, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacagaaagtcagcttacaataatgtgcaagtt	Protospacer
*******..****************************

56. spacer 9.2|1140673|37|NZ_CP011526|CRT matches to position: 2712565-2712601, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

57. spacer 9.3|1140729|37|NZ_CP011526|CRT matches to position: 1136761-1136797, mismatch: 2, identity: 0.946

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggaaccccaatttctacagacaatgcaagtt	Protospacer
********* .**************************

58. spacer 11.1|1952079|33|NZ_CP011526|CRISPRCasFinder matches to position: 1437320-1437352, mismatch: 2, identity: 0.939

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
******.******************* ******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011526_7 7.4|922741|53|NZ_CP011526|CRT 922741-922793 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
NZ_CP011526_5 5.1|786400|26|NZ_CP011526|CRISPRCasFinder 786400-786425 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP011526_5 5.1|786400|26|NZ_CP011526|CRISPRCasFinder 786400-786425 26 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3359-3384 5 0.808
NZ_CP011526_5 5.1|786400|26|NZ_CP011526|CRISPRCasFinder 786400-786425 26 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715511-715536 5 0.808
NZ_CP011526_7 7.3|922685|26|NZ_CP011526|CRT 922685-922710 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP011526_4 4.1|780998|29|NZ_CP011526|CRISPRCasFinder 780998-781026 29 MN693281 Marine virus AFVG_25M371, complete genome 6448-6476 7 0.759
NZ_CP011526_11 11.1|1952079|33|NZ_CP011526|CRISPRCasFinder 1952079-1952111 33 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159745-159777 10 0.697

1. spacer 7.4|922741|53|NZ_CP011526|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************  

2. spacer 5.1|786400|26|NZ_CP011526|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 5.1|786400|26|NZ_CP011526|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtctgggcctac	Protospacer
****************. *****.  

4. spacer 5.1|786400|26|NZ_CP011526|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtttggccctga	Protospacer
***************** ** **. .

5. spacer 7.3|922685|26|NZ_CP011526|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

6. spacer 4.1|780998|29|NZ_CP011526|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

7. spacer 11.1|1952079|33|NZ_CP011526|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
ttttatcgtaaggtgagttttcgtcaagcacct	Protospacer
. ********** *** *********. . *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 718083 : 725903 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 737875 : 752606 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 837854 : 884787 74 Staphylococcus_phage(94.44%) integrase,capsid,plate,tail,head,terminase,holin,portal attL 835951:835967|attR 870698:870714
DBSCAN-SWA_4 967676 : 1021462 53 Streptococcus_phage(33.33%) protease,tRNA,bacteriocin NA
DBSCAN-SWA_5 1041449 : 1049922 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1588627 : 1596939 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_7 1666077 : 1675120 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1807606 : 1881858 75 Staphylococcus_phage(93.22%) protease,tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP011527
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 18549 : 27461 10 Staphylococcus_phage(57.14%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage