CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP012323	Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 strain JCM 1255	2 crisprs	cas3,WYL,DEDDh,csa3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP012323_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP012323_1

1292504-1292589

Orphan

Consensus_repeat	Method
CGCGCGCACTTAGGAACGCAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP012323_1

>merge|NZ_AP012323|1|1292504-1292589|CRISPRCasFinder
CGCGCGCACTTAGGAACGCAAACAGGGCCATTTGCGTTGCTATGTGCGCGCACTTGCCGGTTCGGCGCGCACTTAGGAACGCAAAC

>NZ_AP012323|1|1|1292504-1292589|CRISPRCasFinder
CGCGCGCACTTAGGAACGCAAAC	AGGGCCATTTGCGTTGCTATGTGCGCGCACTTGCCGGTTC
GGCGCGCACTTAGGAACGCAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012323.1\|WP_033510116.1\|1302088_1302982_-\|DUF1287-domain-containing-protein	unknown	unknown	gnl\|CDD\|377737
NZ_AP012323.1\|WP_021648112.1\|1299220_1300240_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_AP012323.1\|WP_162175199.1\|1297664_1297820_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012323.1\|WP_021648500.1\|1301556_1301961_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|226105
NZ_AP012323.1\|WP_021648100.1\|1292748_1293447_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012323.1\|WP_013389990.1\|1291651_1292347_+\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NZ_AP012323.1\|WP_033510118.1\|1296848_1297742_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012323.1\|WP_003813408.1\|1289736_1289922_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012323.1\|WP_021648095.1\|1287585_1288083_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_AP012323.1\|WP_003813401.1\|1288072_1288411_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012323.1\|WP_021648103.1\|1294243_1295206_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012323.1\|WP_080589335.1\|1289417_1289576_+\|permease	unknown	unknown	unknown
NZ_AP012323.1\|WP_021648110.1\|1298044_1298596_+\|putative-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|377672
NZ_AP012323.1\|WP_021648098.1\|1291352_1291547_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_AP012323.1\|WP_021648111.1\|1298571_1299174_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|376808
NZ_AP012323.1\|WP_013389986.1\|1288941_1289187_-\|NUDIX-hydrolase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378873
NZ_AP012323.1\|WP_014760289.1\|1286913_1287552_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_AP012323.1\|WP_014760296.1\|1293362_1293761_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NZ_AP012323.1\|WP_014760293.1\|1289905_1290868_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|119345
NZ_AP012323.1\|WP_021648094.1\|1286347_1286707_-\|DUF488-domain-containing-protein	unknown	unknown	gnl\|CDD\|225730

Protein	Function_ID	Function_description	E-value
NZ_AP012323.1\|WP_033510116.1\|1302088_1302982_-\|DUF1287-domain-containing-protein	gnl\|CDD\|377737	pfam06940, DUF1287, Domain of unknown function (DUF1287). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. This family is related to pfam00877.	1.90337e-67
NZ_AP012323.1\|WP_021648500.1\|1301556_1301961_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|226105	COG3576, COG3576, Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only].	2.22428e-12
NZ_AP012323.1\|WP_021648111.1\|1298571_1299174_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|376808	pfam02525, Flavodoxin_2, Flavodoxin-like fold. This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC:1.6.99.2. These enzymes catalyze the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species. This enzyme uses a FAD co-factor. The equation for this reaction is:- NAD(P)H + acceptor <=> NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy. The family also includes acyl carrier protein phosphodiesterase EC:3.1.4.14. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP. This family is related to pfam03358 and pfam00258.	8.18926e-39
NZ_AP012323.1\|WP_013389990.1\|1291651_1292347_+\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	1.57537e-58
NZ_AP012323.1\|WP_021648095.1\|1287585_1288083_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.27945e-12
NZ_AP012323.1\|WP_021648112.1\|1299220_1300240_-\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	4.77132e-20
NZ_AP012323.1\|WP_021648110.1\|1298044_1298596_+\|putative-ABC-transporter-permease	gnl\|CDD\|377672	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV. CmpB is a family of membrane proteins that are likely to be part of a two-component type IV ABC-transporter system. Families can transport multiple drugs including ethidium and fluoroquinolones. UniProtKB:Q83XH0 is a member of TCDB family 3.A.1.121.4.	1.0422e-22
NZ_AP012323.1\|WP_021648098.1\|1291352_1291547_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.06706e-06
NZ_AP012323.1\|WP_014760293.1\|1289905_1290868_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|119345	cd06553, ASCH_Ef3133_like, ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.	9.16497e-45
NZ_AP012323.1\|WP_014760289.1\|1286913_1287552_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.25276e-29
NZ_AP012323.1\|WP_014760296.1\|1293362_1293761_-\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	5.70785e-42
NZ_AP012323.1\|WP_013389986.1\|1288941_1289187_-\|NUDIX-hydrolase-N-terminal-domain-containing-protein	gnl\|CDD\|378873	pfam12535, Nudix_N, Hydrolase of X-linked nucleoside diphosphate N terminal. This family of proteins is found in eukaryotes. Proteins in this family are typically between 847 and 5344 amino acids in length. These enzymes hydrolyze the molecular motif of a nucleoside diphosphate linked to some other moiety, X.	1.0494e-23
NZ_AP012323.1\|WP_021648094.1\|1286347_1286707_-\|DUF488-domain-containing-protein	gnl\|CDD\|225730	COG3189, COG3189, Uncharacterized conserved protein [Function unknown].	1.45764e-50

>NZ_AP012323.1|WP_013389990.1|1291651_1292347_+|SOS-response-associated-peptidase
MCKRFALDLDWDAIAAQFSVAEEDVRGDVLPRPSYNIAPTQNIAVIAQGKDGHRHLTGAYWSLIPSWSPGKTLPYPTYNARVESAHVKSTFAESTRSRRTIIPASGYYEWRGRRPFYFSPEMESTALAMAGLYSWRRPSAASLWQLTATILTCPAVDGPATVHDRMPLLVPAGMTSEWLDPSIDGARLLAPMRKAGAELSARLHFHEVAPPEGDGPSLIRPINREEPMRLF
>NZ_AP012323.1|WP_021648098.1|1291352_1291547_+|HAMP-domain-containing-histidine-kinase
MANRPGHGLGLSIAKACTDAMQATLAVSRPSPGTFRAEIKLPNRPTQRHCPQQKEHGHRPHARQ
>NZ_AP012323.1|WP_014760293.1|1289905_1290868_-|GNAT-family-N-acetyltransferase
MRLTEVWRADPERTFELFSEFPADENGFENQAAGMDRERFAVYVHELEEQSRGIGLQPGWVPSSKYVLINDEGAYVGIFNLRHRLNDNLRVGAGHIGYGIAPQYRGRGYATVGLRLTLDKARELGIDEAYLSVHKDNRASLAVQQHCGARIDHEDGLEYYTRISTAPEPGNLPKAEFMFPGPERDRLVGLILAGTKTATAALMIEYEEDDEPLPQVGERSALVDSSERPVAILVTTAVDVIPLGKITDRHAIDEGEGDTTAAAWRHTHESFWNAPEYRNEFADPDFPLNDDSLVVFEHFKVVRLLDSMANKTADGYEQQV
>NZ_AP012323.1|WP_003813408.1|1289736_1289922_-|hypothetical-protein
MNSKYEVIRQFVAAHGGRAELIEHETAIEDSYHTLAIDPRLVVECNVIAGCFNGEDFVKPL
>NZ_AP012323.1|WP_080589335.1|1289417_1289576_+|permease
MLNLATTLGQAVGPSITSAVKTVTGTFTAAFAISIVMALCAAGFVLSLRKVR
>NZ_AP012323.1|WP_013389986.1|1288941_1289187_-|NUDIX-hydrolase-N-terminal-domain-containing-protein
MIAAGRTLLEQARELQALAQTGLAYCKDPFDRERYERIRAIAVDMLAMQADVPAEEMRRLLSAGYPTPKLDTRAAIATPTG
>NZ_AP012323.1|WP_003813401.1|1288072_1288411_-|hypothetical-protein
MLADAEQWRRLFDTGVTSDSPEAQRLAAQIMDKNIKAQVPQDAEEQAAMPLSDTLGVVRSALCGDPRFADPCGAALYGSKTCADFANEATRIHVQRLAQQLERQLDQRPASS
>NZ_AP012323.1|WP_021648095.1|1287585_1288083_+|GNAT-family-N-acetyltransferase
MQDMTTRIVPIEPQWFMQKAEVQSRTWRELNQGHIPQDIVDAITPAFALKLTRGHAADPNQVVLIALADDRVVGFIELLRTPRSPINRPEAAELASLYVLESEHRHGVGRALVEAGRQAVGNDRLVLWVVGFNTNAQGFYRHIGFHETGLTQTEDMGPELEMINY
>NZ_AP012323.1|WP_014760289.1|1286913_1287552_+|GNAT-family-N-acetyltransferase
MNTIETERLLLRPWKVDDAAEAASLFRYASDPEIGLRCGWPPHTSVEGSMHDIRNILAVENNWAITIKGGAPNSNAPVGSIALMPVSHYTADAVASDPELTKRYGKYLGDNALEVGYWIGRPFWGKGYMPEALTAVLGYAFDTLRKDAVWGGHFAENTQSERVQAKCGLHVVAESKQDYYPLIDRHYDRVYRIITAGEWRDAEHRQMARMIA
>NZ_AP012323.1|WP_021648094.1|1286347_1286707_-|DUF488-domain-containing-protein
MGIAIKRIYESPEAPDGYRVLVDRLWPRGMTKERAALDLWMKDVAPSPQLRKWFGHDLARFAEFRAQYIAELDANAAAEELLRICAEYPDVTLLYAAKDPQVNHALVLRDYLEDATAAK
>NZ_AP012323.1|WP_021648100.1|1292748_1293447_+|hypothetical-protein
MDVSDVIARREFMPTYIWLDVAFLIGFAALLVWRRKYMTLLVGLVMGGVYFAVGYGAFNLLTHSRSISGGSTFWVLLWMSVSYGFTNFSWLWLRLSRDRHLAEWSMLILVWWFCCPLMSQTFTARFASGMQPIVIQRTTGAYHGWMAVILSRRRMVDHAVCRRSAWIPADQARGRRRYPKHLMYECTGISPTLLYSRTTIVRTACQRWFSNHPAQSTTASMLLPSGSSTNAE
>NZ_AP012323.1|WP_014760296.1|1293362_1293761_-|VOC-family-protein
MLDHITLHVRDVGRSIAFYEHALAPLGYIVKAHHEPTLGFGVDDGTPHSDFYVSPLDDAALAPPPTHIAFLAPNREAVRGFHAAALAVGGRDNGAPGPRPYHPGYYSAFVLDPDGNNIEAVVDWAGWFENHR
>NZ_AP012323.1|WP_021648103.1|1294243_1295206_+|hypothetical-protein
MRRTVIIVAVMLCAAIALFASIPRLMRFVWPASGPEPRRASDAYCSATLSSGDNKEMLSVEQALNAEIITRAAVKRGLPDHAATVAIATAMQETRLMNLSYGDRDSVGLFQQRPSQGWGAKEQLMDETYAANRFYDELVKVPNWQSVPVEDAAQSVQRSQYPDRHADWTNLARTWAAGLTGETGAGVACALEPAQPSDADMDGLTSDFRNEFPTVMVSQPSSLEPSSKTQDDGGDKAADNSAANDGSGKTTSKTLTFTMSAGTDTENGKRLCRQATAWLVVHARRYGIDSLRANGMRWNRTDGVWAGTETGDLTITATLA
>NZ_AP012323.1|WP_033510118.1|1296848_1297742_+|hypothetical-protein
MEAAIGMEIREHKSSFAVYVVLRVLVIAVAVLEFFNGDYEAVFLCILTLLLLLAPAFVQVRFRIELPSALEVIVLVFVFAAEILGEISSFYEIFPFWDTVLHTMNGFLAAAIGFSLVDLLNRSDRAKFELSPLYLAIVSFCFSMTIGVVWEFFEFSMDMLFGFDMQKDAVVHSISSVMLDPAHANRAIHINDITQVAVNGRDLGLGGYLDIGLIDTMEDLIVNFIGAVVFSVIGFIYVKNRGKGVSVISRFVPRRKSHDRDYLRLAGGDGDASLAPGAQAHQTQHQSQHDPHHHDHP
>NZ_AP012323.1|WP_162175199.1|1297664_1297820_-|hypothetical-protein
MLAIAAELVIIGVQVLPFSPAALKPASWVIVVVWIVLGLVLRLMSLRSRRE
>NZ_AP012323.1|WP_021648110.1|1298044_1298596_+|putative-ABC-transporter-permease
MAIVIALRRIDRGWKVVLVGGLAGGMLEFAMSLIQQYLLGSRSWNYANEPLNIGGRTTVPFMLFWGLLCYLIVRFILPLVLWLVHLIDDTWHTRLATILLAWILIDSVVTPPAIFLYGQRANGAVFDNWFAQHIGQLSMTTSCACISRTCACESHRGSSGTIYRPPARSAVMAYGRHARLAPS
>NZ_AP012323.1|WP_021648111.1|1298571_1299174_-|NAD(P)H-dependent-oxidoreductase
MSNNILVITSNPEKDSMTDAVGAAFAAGAVERGASADVLDLYDEGFNPVYSAADRAHYLGHAPMPEDVVPIQRRLAQADVIALVFPIYWYTMPAMVKGLFDRVICRGFAYHPDGTPGALADKTVRVIMLTGSSRQWYESDGIGESLDNQICRQTFAKYCGVKDVELVYVDNLSMGDDSSDKRKAAAAQLEGIRQLGASLA
>NZ_AP012323.1|WP_021648112.1|1299220_1300240_-|VanZ-family-protein
MGFFESFSAPFMMSVALWPLVSFIVTVPVLAMLYHRDNRLGFGAALSAYATVLYLIGLLCFTLYPMPDDPAAYCATHHLHPQLNPLQFIGDIRADGLTAILQIVMNVVFFVPLGFIMKRVFRWKFAVALPVGFLASLLVETMQLTGVMGVFPCSYRLFDVDDLIWNTSGAVIGYGCAMLFDRLFPPRRTDMQTVTRPGFVRRFVAFLIDMGLVVVCATPVGVAAMVLVTMISGRPGADVQRMRLLGPLGFGDIAMLVMLVLFEWVIPWFRQGRTLGGSYTHMTCETTPRSGARRVAFYAARFAAICCVVFCGRVPWAGAVILVMGVFWLVRGQMPYDLI
>NZ_AP012323.1|WP_021648500.1|1301556_1301961_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MATLTADMKTFIENNLAWITTVDKDGNLDLGPKMSMFVLDDNHLAYHERTAGQHYRNLQDGGPLVVAVANLAEKKGYRFRGTVTLHTDDDIYDAQVKVAEEKGTKKPAAIPVLEITEIQDLSSGATAGKTIDKD
>NZ_AP012323.1|WP_033510116.1|1302088_1302982_-|DUF1287-domain-containing-protein
MIRRYRVSNGNAAGGSGGNGREEGREDGRDDGRKASRAVGRAVAAAMVALLIVSAVLAGSWLWSRRDGIISGVKAFGVKASSMYSHTREPDTTVMPPDVSRRRYPVLTSPVDFNGNGVDDYTDIMRGARKDALAHPAYDDGYYQGGYPPADRGACVDVVWRAFRNAGYDLKAMVDADIAADRASYSSVAAKPDPNIDFRRTGVLDVFFGKYGITLTNDVNDHAQWQQGDIVVFDRVKHIGVISDKRDADGFSYVLHNMNQQRRENDYLAFSRRMGVTGHYRWDASRVPKSVLRAWKG

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Crispr_ID: NZ_AP012323_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP012323_2

1810051-1810156

Orphan

Consensus_repeat	Method
CGTCACTGTGTGCGTGGACGCACAGCGTGACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP012323_2

>merge|NZ_AP012323|2|1810051-1810156|CRISPRCasFinder
CGTCACTGTGTGCGTGGACGCACAGCGTGACGCATACCACAAAACCTTTGGAAAATAAGGATTTCTGGCATTGCGTCACTGTGTGCGTGGACGCACAGCGTGACGC

>NZ_AP012323|2|2|1810051-1810156|CRISPRCasFinder
CGTCACTGTGTGCGTGGACGCACAGCGTGACGC	ATACCACAAAACCTTTGGAAAATAAGGATTTCTGGCATTG
CGTCACTGTGTGCGTGGACGCACAGCGTGACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP012323.1\|WP_033509820.1\|1823726_1828547_+\|discoidin-domain-containing-protein	unknown	unknown	gnl\|CDD\|119334
NZ_AP012323.1\|WP_003819143.1\|1828945_1829458_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NZ_AP012323.1\|WP_003822766.1\|1820180_1822364_-\|circularly-permuted-type-2-ATP-grasp-protein	unknown	unknown	gnl\|CDD\|379601
NZ_AP012323.1\|WP_003823255.1\|1808636_1809896_-\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	unknown	unknown	gnl\|CDD\|235536
NZ_AP012323.1\|WP_003818877.1\|1806379_1807009_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012323.1\|WP_003821816.1\|1796420_1797845_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180907
NZ_AP012323.1\|WP_033509815.1\|1797957_1803840_-\|beta-N-acetylglucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369423
NZ_AP012323.1\|WP_033509818.1\|1812397_1815364_-\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_AP012323.1\|WP_003817716.1\|1806165_1806255_-\|AURKAIP1/COX24-domain-containing-protein	unknown	unknown	unknown
NZ_AP012323.1\|WP_017143575.1\|1816676_1817651_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012323.1\|WP_003814603.1\|1811511_1812096_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_AP012323.1\|WP_003815687.1\|1815573_1816602_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_AP012323.1\|WP_013390211.1\|1804070_1805150_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|260010
NZ_AP012323.1\|WP_003814621.1\|1794363_1796040_+\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl\|CDD\|100094
NZ_AP012323.1\|WP_003814594.1\|1819258_1820059_-\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_AP012323.1\|WP_003814612.1\|1805299_1805998_+\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NZ_AP012323.1\|WP_100219091.1\|1793651_1793852_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP012323.1\|WP_013390212.1\|1807094_1808495_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_AP012323.1\|WP_033509836.1\|1822549_1823452_-\|tRNA-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|211337
NZ_AP012323.1\|WP_035139366.1\|1810176_1811403_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|235113

Protein	Function_ID	Function_description	E-value
NZ_AP012323.1\|WP_013390212.1\|1807094_1808495_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_AP012323.1\|WP_003823255.1\|1808636_1809896_-\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.21148e-73
NZ_AP012323.1\|WP_033509820.1\|1823726_1828547_+\|discoidin-domain-containing-protein	gnl\|CDD\|119334	cd06564, GH20_DspB_LnbB-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	4.28952e-113
NZ_AP012323.1\|WP_003821816.1\|1796420_1797845_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|180907	PRK07251, PRK07251, FAD-containing oxidoreductase.	1.6215e-158
NZ_AP012323.1\|WP_033509815.1\|1797957_1803840_-\|beta-N-acetylglucosaminidase-domain-containing-protein	gnl\|CDD\|369423	pfam07555, NAGidase, beta-N-acetylglucosaminidase. This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity.	8.18028e-114
NZ_AP012323.1\|WP_003822766.1\|1820180_1822364_-\|circularly-permuted-type-2-ATP-grasp-protein	gnl\|CDD\|379601	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2. Circularly permuted ATP-grasp prototyped by Roseiflexus RoseRS_2616 that is associated in gene neighborhoods with a GCS2-like COOH-NH2 ligase, alpha/beta hydrolase fold peptidase, GAT-II -like amidohydrolase, and M20 peptidase. Members of this family are predicted to be involved in the biosynthesis of small peptides.	0
NZ_AP012323.1\|WP_003819143.1\|1828945_1829458_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	7.74546e-57
NZ_AP012323.1\|WP_003814603.1\|1811511_1812096_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.65448e-40
NZ_AP012323.1\|WP_003815687.1\|1815573_1816602_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	1.82898e-152
NZ_AP012323.1\|WP_013390211.1\|1804070_1805150_+\|ribonuclease-HI	gnl\|CDD\|260010	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD), residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Prokaryotic RNase H varies greatly in domain structures and substrate specificities. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability.	3.60416e-57
NZ_AP012323.1\|WP_003814621.1\|1794363_1796040_+\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl\|CDD\|100094	cd05801, PGM_like3, This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_AP012323.1\|WP_003814594.1\|1819258_1820059_-\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	4.25788e-27
NZ_AP012323.1\|WP_003814612.1\|1805299_1805998_+\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	5.09209e-120
NZ_AP012323.1\|WP_033509818.1\|1812397_1815364_-\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_AP012323.1\|WP_033509836.1\|1822549_1823452_-\|tRNA-pseudouridine-synthase-A	gnl\|CDD\|211337	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.	5.15031e-93
NZ_AP012323.1\|WP_035139366.1\|1810176_1811403_-\|pseudouridine-synthase	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	1.2475e-99

>NZ_AP012323.1|WP_003823255.1|1808636_1809896_-|bifunctional-riboflavin-kinase/FMN-adenylyltransferase
MKITTLAPDASGLVEWPTLSANRKSVVTVGVFDGMHRGHQAVIRRAVELAKADKAFSVVVMFDPRPGVVHAYAAAHDGQEPGDGFCDPMALTSVDQRLRTLENLGVDHVLIVRYTLAFATKSYRFFLGQMVGKLGMRTLVLGTDAAMGANRAGDVKAIGVLAQATGVFELEIVDDRGPGHVRVPADVTPQMPSEPGEPVDPTEGMTKAQLRAWSKKHQGREVRVWSSTNVRYLLAHGRIKAADEILGHAHAIEGTVVHGEERGRTIGFPTANLGSMIDGYIPVDGVYAGWLIDLGAAGAPADSDENASDGNSGSGNASVIPRVYDSGSSKARLAAESPYRWPAAISIGTKPTFNEETGLNERVVEAYAVTDEWLDLYGHDVRVEFAGFLRPQVKFDSADALKDELTRNVQETRELTSAR
>NZ_AP012323.1|WP_013390212.1|1807094_1808495_+|DNA-repair-protein-RadA
MVKSATRYVCSECGWDGLKWVGRCPQCGQWGTVEEFHEARPAASSSRTAAPGRTSRTQAAASIVSAATPITQIDTSTASRLSTGFGEFDRVLGGGIVPGSVVLIAGEPGIGKSTLLLETAGNIAAGQPNGSVLYVSGEESQAQVRLRASRVNAMEQNLLLASTTDLATVLGLIERTRPTLAIVDSAQTIVSQDVDGISGGSTQVREVASALIDTAKTLNIPVLLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDPETALRMLRAVKNRFGPTDEVGCFDMSGEGIEEVSDPSGLFLSSADERVEGTCVTFTLDGHRSLPIEIQALVTSSVLPTPRRAVVGVETNRIAMLTAVLYRHGKVNLLANDLYVSTIAGGLAKEPACDLAIVAALASAARSKPIARDTCAIGEISLTGQIRPVPRLEHRLREAARLGFATAVVPPMRKRVTIEGLRIVEVTHLRDALESLGVV
>NZ_AP012323.1|WP_003818877.1|1806379_1807009_-|hypothetical-protein
MAKTQSPSYPHGSSASRGKLIVVMIVAALVVVLALLSAFVWPGWALNKTDEVTKVQQQTATEPTKPSIKATALPDDASELLKAMPDSVLNYARTKAGASETWKSASPLEEYTLTYSTGKSAKDVTVIVAQWSDSDTVKKQYDELAKNLTGKELKSGDVKVSGKSTGSYTVRADSKDGKTATALWQNDTAVFEVTGSKESVLRFYEPFPL
>NZ_AP012323.1|WP_003817716.1|1806165_1806255_-|AURKAIP1/COX24-domain-containing-protein
MGSVIKKRRKRMSKKKHRKMLRKTRHQRK
>NZ_AP012323.1|WP_003814612.1|1805299_1805998_+|ribose-5-phosphate-isomerase-RpiA
MDKAQQDALKKAAGIEAAKLIENGMIAGLGTGSTVRFLVDELGRRVKEEGLQFTGVTTSRRTQEQAEGYGIKIVDIDDVDHIDITIDGADEVDKNFNGIKGGGAALLWEKIVATNSNKIVWIVDESKVVDTIGKFPLPVEVIPFGAGHVIKQFEAKNYKPVLRLDADGKEVRTDENNFVVDLHLERIDHPQDLAEDLINTVGVVEHGLFLNMVDKVIVGDPNGPRVMTNGNK
>NZ_AP012323.1|WP_013390211.1|1804070_1805150_+|ribonuclease-HI
MTITVSTDGSALGNPNGPMGWAWADHELNMAHSGGHEHGGDCDAGGATNGTNQIGELCAVLEALRAHPGAEPLVIETDSQYAINCSTKWVHGWKKNGWKNSQKKPVKNAALIRAIDAELSRRAGSVKFVWVKGHAGNAGNEKVDDLARTYAGDCRSGVQEGYLPKEGWQSLLASEYAKGTDVPEDAQMLLDGKISTQEYHLGRGGESGEAGAEHESDGDNVAKRIRKPSLAELLAEPEGVPDYGETQSDTSSTTAMSTPTVPMTTESDATVALSSNSAQAEDTQSGSSTRSVAEPAAPRLSPTALTASGTLRFTPPPSTSPTYDGRPRIIHGLVRVDGYVNGDGTITLNNAAFYTDKQG
>NZ_AP012323.1|WP_033509815.1|1797957_1803840_-|beta-N-acetylglucosaminidase-domain-containing-protein
MRSKALGGLLAAALSLSPAVAIGVQTAYAAGGDTAATEYTLYPKPHSIRYDSGQYILRDINVIYDDDIDEATQDRLDEVAALKNLNVTESDAAVSGKTNVYVGVNGSDGKAETAIESKYSPDSAIFDKTDSYFLKSDNGTISVLGKDTDASFYGLTTLYQVLGQIDSLTIRNFTVTDYADVVSRGFIEGYYGNPWSTQDRINLMKWGGYYKLNSYFYAPKDDPKHNSQWRTLYTQDELDTKIKPLADAGNASKTRFVFALHPFMNNAIRFNSEANYQADLKVLQDKFAQTIGVGVRQIAILADDAANVGGNNYTKLLTDMVAWLKEMKKTYPDLKTTLPFVTQEYMGNGMSYFANFPKEVQIVMTGGRVWGEVSQNFTDTFTSNVGRGPYMWINWPCSDNSKSHLIMGGYDTFLHPGVDPSKIQGIVLNPMQQSEPSKVGIFGNATYSWNIWRSKSEADQAWQDSFSFVDHNSAVPTAASNALRELSKHTINQNMDSRVTALQESVDLAPALTAAKAKLADGTITAHDLTDIKAAFVTLQKAAKTYRAKGDAKMLGDIGKDYTGQDANEQIAPWIDCWDDTTKAALAYIAGIEAALNGDTSSTLKEYSDAQSAFAASKKHGFYYVNHTEYAEVGVQHIVPFIKAMDSYLSNKVQQEADPNVVTKTYISDVFTTPTSGSIEDIFDGKDSTVTVFQNPNYLHKGNYVGVKFSKATTLKSIRFAFNGGKNHFYHSKLQTTTDGENWTDVPDATFERPKGSEEPIKVTGLNITGVTGVRLIATADNGDDLWLGIKGIDVNKVEKETLAPYTATGVQLENLNATYSSTKEQMIDGNPSTITYLKDPNGDKIAAGAAVIVDLGSSKPIGEVTITGHASSPDDRPSQGVVEVSDDKATWTKLGDLSDDVTSTVSGNVTGRYVRIRNTAAKNVWWRVAEITVTPPETADPLKSVYTNKTQHGYTATLGANTAELFDKSHTMLDGGQYAGLDLLAIRDLTDVELNTGNANPSLQISDNGLVWTTVEPGNLTGKTARYVRVINDTDGAAFSVDKLKVGFSTVGKFGKLVSSDIQKRTDWGTDTRESGNAFDGDMTTVIKFAGQPRRGNTAVFDLGQPIDITSLRIYTQDTQYDYIRDTKVQMSVDGKTWVDAFEIGDGVSDTDTTTAFGDISDTNKKTDSNYPNVFYYGKDDIANGTGMRYLRLLTTADYPQRALAFNEFMVNQGAYVSTEANAAFSATKVEERGHAPSNMIDGDLTTTYKPSAADGSLTYKIDDPSDIKSFRIVQSGAASGATVTGTVYDAATGTTSGVTARTAARSTSEVTFGTLEQAINEFKVPDGKQLLSVKIAWGDAIPEISEFITLDSADTDADITTAKAALKEKIDATVDTSAWTANAKTAYDEAKATAQAVYGSPLVGKASIDAAASAVQSAIDAAQTKADAAAVAALRKLVDAAVTNDGHFYTTVTFTAYTDALDEVKEALKDTNNLSTADAASLKKAVDDALAALKDSTYQRELATIAVDSFATIDEADYTTNSYAAFKAAKEALDTLIAADGTKPATFKTKTAEYTTAKTALVNVAALKAQIAHESNYVEANYTADSWKAYSDALKAAKAKLVNGTTDSVAAALTALTAAENALVRTTTPPDTTVLDETIADMEKVNGSEYTTDSYKALTDAIAKAKSDKVKGDAGLNQQNIDAMKAAKEALVSTVELKAKVAEAGKVDSSKYTTASYEALSKLLAAKDDTTSDPVVKGLDTLYKSGTVKELAERVAAIDAAVAKLDARATGVKDYVDGIKLKDNDKGYYTDASYKAYSDAYKALKKLAAAGEGEVGIAEFTEAKEAFEAAEAKLAYKSADYGKIDDLLAKVPSDLSGYTADSVAKFEAAKKAVKRGLTIDQQSKVDAMADALEAAIKGLTLKSQAPGDNKGDGTQSGTHKGDDISKTGADVQVFAIIIALATCAGLGAVAYARRRREV
>NZ_AP012323.1|WP_003821816.1|1796420_1797845_+|FAD-dependent-oxidoreductase
MTSTSSTDVPSAISANALIIGFGKGGKTLAAKLASTGRTVVVAEASADMYGGTCINIGCLPSKSLILSADRARREGANRTAETREAAFEAAIREKRRVTAMLRDRNYHKLADQGNITVITGRARFTGAHSAEITTADGPVAVAADMMFINTGATPHIPDIPGIRTTPGVYTSTGLMDVDELPQRLVIIGAGFIGLEFASMFADFGTAVTVLQHSDEFLPREDEDVAAAIRAQLESQGVRFLFGADTKAITSADDGIRLSVSMRGTSDVGSEARLCLSTDAVLVATGRTPNVEGLNLEAAGVELTERGAVKVDDLLRTTADGIWALGDVNGGPQHTYISLDDYRVVWSQLNGSARPYTLSDRRNVPSSTFLHTPYSRVGLNEREAKAAGLDYVVKRLPVATVPKAQVMRRPEGMMKALVENGTDRILGAMLLAAESHEVINIVKLAMDMGAPASTLRDMMFTHPTMAEALNDLFA
>NZ_AP012323.1|WP_003814621.1|1794363_1796040_+|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MVANNAGKPATPADLINVDEVIGKYYDLVPDPAVPEQRVIFGTSGHRGSSLKTSFNEAHIVAITQAIAEYRKKAGVTGPLYLGRDTHALSGPAEKTAIEVLVANGVHVRVDSRGDFVPTPVVSQAILTHNRAADGTQRFEGEGLADGIVVTPSHNPPTDGGFKYDPVTGGPAPAETTNAIAARANELLGDFKSIKRVPYEEAIKSEYVEGFDFREHYVADLGNVIDFDVIRDSGVRLGIDPLGGASVNYWPLINEKYGLNIGVVRPEVDPTWRFMTIDHDGKIRMDPSSPYAMKGLVDQLNAGAWDKYDLVGGTDPDADRHGIVCPNWGVMNPNHYIAVCVEYLFGGNRPGWPEGTGIGKTLVSSSLIDRVASSINAKLVEVPVGFKWFVDPLFSGEVAFGGEESSGMSFLRRDGRVWTTDKDGLIPDLLAAEITAKTGKNPAQLHQDQVARFGESWYKRVDTPTTLEQKAKFAKLTGDDVAATQLAGEDITAKLTEAPGNHAKIGGLKVTTKDNWFAARPSGTENIYKVYAESFVSPEALDKVLDEAKLVVDKALGE
>NZ_AP012323.1|WP_100219091.1|1793651_1793852_-|hypothetical-protein
MEMARQRRSVLAIDADMPTAWGIKGAWNRREVDGLAFAAKRAAITMAPVVEPVFASVFTASAEGAT
>NZ_AP012323.1|WP_035139366.1|1810176_1811403_-|pseudouridine-synthase
MAGSAAPATPTSGLLVVDKPRGVTSHDIVAAARGALHMKKVGHAGTLDPMATGVLVVGFGNATRLLNHIVEHDKTYEATIRLGQSTTTDDADGELLSATSPERWQELLALPVAGGPQSAGENGPVNAAKGSAVAAAKVADDGSAYHPHQEAFLPDGQQLWRDRIDDIIALQLTGSIEQVPNTFSAIKINGQRAYDLARDGKDVQLKARRITVSAFGVLDVRFGYAPTRQLGLPLVSAADGRATTERDDAEATPVIDVDVRVSCSAGTYIRALGRDLGAALGVGGHLIRLRRTRVGGFDVSSPNVITAHVETREYTDRNGNHQSRNRAVLDVIGDELAGKALTMLDAARGTMPLLAITDQDAVNLRYGRRIPYDIHGTAAAYLPQSGEVVALVERAKRGEAKPATVFGA
>NZ_AP012323.1|WP_003814603.1|1811511_1812096_-|30S-ribosome-binding-factor-RbfA
MAGTNPRAARVAALIQRVIASSMEAQLHDKRLASVTITDVRVTNDLQIAKVYWTQLGHDGREQGERKRAKQALDQAKGRLRSLVGSKAGLRLTPQLQFIYDEVPSEAHEIEDILAVAHKRDEEIAKARETAQYAGDADPYKHPEERDDDEFDDDDEYDEYADDLDDDDVEGNGIGVETLEDDAENAADEATGDR
>NZ_AP012323.1|WP_033509818.1|1812397_1815364_-|translation-initiation-factor-IF-2
MAKKRVYELAKDFGVDSKTVLDKLKDMGEFVKSASSTVEAPVARKLKNAFQKGEAKPGASAAERKTPAPAPSEHRAPAVKPAPVAKPGLGKKPAAAPRPAEPRSAAPAAHVPSSNRGTTPRDNRNESRGDMRDARPNREGGENRPSPAQRHNPHAPSGQRGAFPGPRSHQPGHGGNAGGRPQDSRGGSHQGQPRQGQQPGAGSAPSANGGARPSTPGPRPGNNPFSRKQGMHAPTPRDIPRPHPMARPTVNGNHNDNRGGRGGRPGAGQGGRGGFRGGRPGQGAQGAKPGQWGHNRPGQTGGARPAGGNRFGAGAGTGAGQGGGFQNNSNTSGTGPSRGGGRGRGGAAGAFGRQGGKSSKARKNRLAKRQEFQEMKAPVIGGVRIPTGNGQTVRLRQGASLADLAEKINVNPAALVTVLFHLGEMATATQSLDESTFQILGEEIGWNIQIVSAEEEDKELLQQFDIDLDSEELQEDADLKPRPPVVTVMGHVDHGKTRLLDTIRKTNVIAREAGGITQRIGAYQVTVDLEGEKRKITFLDTPGHEAFTAMRARGAELTDVAILVVAADDGVMPQTVEAINHAQAAKVPIVVAVNKIDKPGANPEKVRGQLTEFGLVPEEYGGDTMFVDISAKQGTNVDKLLEAVLLTADADLDLRANPDMDARGATVEARLDKGRGAVATVLVQQGTLRIGDAIVAGTSYGRVRAMLDENGNHMKEATPSTPVQVLGLTSVPTAGDLFLVASDDRTARQIAEKRQATERAAQLAKRRKIVSLESLKEQFAKSEVDMLNIVIKGDSSGSVEALEDSLMKIEVSDEVGIQVIHRGVGAITQNDVNLATVDKAVIIGFNVRPNRQVADLADREGVEIKYYSIIYKAIEDIEAALKGMLKPEYEEVVTSHSEIREIFRSSKFGNIAGVMVQDGEVKRGTKCRILRNGVATVNDLEISSLRRFKDDVQSVKEGYEAGINLGTFNDIELGDIIETFEMQEVERK
>NZ_AP012323.1|WP_003815687.1|1815573_1816602_-|transcription-termination/antitermination-protein-NusA
MELDLAGMHQLAIEQGIDLEQLDAALEEALRLAYLKTPHAAKHARVELDTRAGTFTVWARKEIPVEPTEDDPHPAPELGEEYDDTPRNFGRLAAATARQVIGQLFRKAEDDKVFGAFSGQKGKLVTGIVQQDASDPTNVHVAIGDVEAILPRREQVPGERYRHGERLRVYVVNVARGVKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGVNPKGALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVASALSPAVATGVQVISEKNKTAIAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESTEAHAKKVAAEGK
>NZ_AP012323.1|WP_017143575.1|1816676_1817651_+|hypothetical-protein
MQTRHWPDHGIPCRERNISSWCRRIVAALCITALCGALSACSAPRIDGRAESEHQPSACESAYWAADASTATMNGRHHIIMRYLAAKQAVGQWSEVAATCTQRFAQGTIRSAQAEHVAVTLGTRLGGNDTYRTVSDDSLRQVLGIDLDGATLGAMSLAEDRAGFVMEVLAARDTPGATLSRSDRHKTAGQLLFTASGLSRDPREKVYDIQKILASPTSMTDSTTGLSVPTTALTEIDCAREQLAAMADDGASAKSKHTDKTGNNTNGNGDTDSATDTTDVNATDTNTVGTENDARLRVLSTLISSHITSAFALGYPDMDAFLFS
>NZ_AP012323.1|WP_003814594.1|1819258_1820059_-|transglutaminase-family-protein
MKKLVFDYEMKLTFSSPVTDHRFQLRCVPATGPRQQVVDVEVAIEPDVELETTIDSFDSVVMTGFIPQPHTIFSYSVKGIAFVDNAHIKSEIYKPLYRFNSALTIPGPCIEAMIAACRARIAGLPADATPIDQAWEVMDEVYQAFTYTPASTTIRTTAEQALAQRKGVCQDYAHVMLSVCRHVGLTARYIAGLLGGEGATHAWVEIYHDGRWIGLDPTHNRMVDDNYITIAHGRDYRDCMLDIGIFSGYQVQQNQWVNASVHEQLL
>NZ_AP012323.1|WP_003822766.1|1820180_1822364_-|circularly-permuted-type-2-ATP-grasp-protein
MTERSARQFAEELVNRRGDINRELSRNGVRFGVYKNGEYHDRLFPYDPIPRIIESDEFDELEAGLKQRVNALNAYLKDIYSDKRIIHDGVIPEEYVYTSAGYFPQVNGVTPPGGIFAHIAGEDLVQGEDGRWWVLEDNLRIPSGASYPLFARDIERRTNPKLFRDVHVRDNRDYPRLLRKAMDFVSTEGIAVVLTPGRYNSAFFEHAYLAEKTGAALAFPEDLEVVDNKLYFLDYAGNRHRVGAVYRRLSDEYLDPFAFNPDSVIGVPGLLSAYRSGNVAIINAPGNGAADDKAIYYFVPQMVRYYLNEEPILHNAPTYMPMFEKDRKEVLDRMGELVIKDVAEAGGYGVVFGSSLDKAAREDLADRIKEDPRRFIAQEVIQFRDIDVIDPDSGEVSPRKCDLRAFVVTGQNTHVWYSGLTRYSSVPGQMIVNSSQGGGFKDTWVLAPEDGSTDRQREESVASVNLIPHSKRHSLSLVTASKADNLYWLGRYTERAFTTLVQFFPFYDRVMDTDVDAFRPFAKALDLPQDFEDFDGFIHSFLYDGTNPDSVRSAIVAAFNNAVVLRPELTSRLLQYVELAVKNITEAAERSASADDIYSQRDIADDMLAFWGGIENSTADITLKAFVFIGKYIERIDLYTRFHLDNSELDAPLAKLETYSRTLDGMPLPSCFVSGISWLLGQLPSRGYPELTSRLNEFLTDFNSRAITGDPKDAGMLNAMNMDAKRP
>NZ_AP012323.1|WP_033509836.1|1822549_1823452_-|tRNA-pseudouridine-synthase-A
MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTGVHASHQVCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDVTVAPSGFDARFSALERTYVYRVADRASEVDPRLRGFVLHLDADLDVAAMNEAAAMTIGLHDFGSFATPNPGGTTIREVKTAYWRRIPTRPLVVDGMGERYRTPAAESDLLCFTIVADAFARNMVRSLVGGCIQVGMGKRSTDWFREKMAVPLRESSTGPIAPQGLTLEHVAYPADDELAERAERIRAKRTL
>NZ_AP012323.1|WP_033509820.1|1823726_1828547_+|discoidin-domain-containing-protein
MSLTGVTAAQASDDNLALNQTVTASSYEVATTAPEKAVDGDLGTRWGTAQNKAANEWIEVGLGGTKTVKQINIDFERKDADQNITSFKVELKQGDTYTKVYQKDTRAKQQEIILLDQAQQASAVKVTVLSADGGTMNWVNVGINEISVYSAPKETVLDTADTNHMLGATMTASSNETATLTPDKAIDQNRTGRNNRWASGYETPSNIWLKAEFPRLTAVKDIRIYFFERDVNPKPTNVQSFDLSYTDSEGTEHTLKSGYAMTASGTGYVADVVIQLDQAVNARSLKLSNFAIKSSEYNNVSVAEWEAYSNDQAEPGATLDSVVSDLESNHLTIETDTDTLALPTVPDGYTVKFNGADYEQLIAADGTVNHPLVDKTVQVAYVVTDTATGNTKTTSDIPYVVKGTNQQQEGNNAKPTIIPEIAEWHSTSAAKLAASAVTKVVYDDDSLKAVVDEFVADYKDFTGIKLTAKKGAAEAGAFNFVKTDSTAAIAQLGDEGYTMNIQADRVVAKSSSVTGNMYAMQTILQMTKQDASGFVIGSMRDYPRFTTRGLLLDVARKPVSLEMMREITRTMRYYKMNDFQAHLSDNYIFLENYGKRDNEDEAFKAYDAFRLESSLTNDKGESPTAEDYSISKKTFKQFIQDERALGMNVVPEIDVPAHANSFTKIWPELMVKGRVSPINSNRPLIDHLDVSKPETIAKIKEIFDDYTKGDDPTFDSDTTVHIGADEFLYNYTAYRKFINEIVPYIKDTNTVRMWGGLTWINDHKTEITKDAIENVEMNLWSKDWADGLQMYNMGYKLINTIDDYGYMVPNGSYGRANAYGDLLNISRVFDSFEPNKVRSSGGYQAVPSGDDQMLGAAFAIWSDNIDKSASGLTESDLYWRFFDAMPFYAEKTWAATGKEKGTAAKLTALAAKQGTGPRTNPYYQATSKNSVYESYDFNDGLADASGNGRDLTIGDGSKAAVKDQSLKLAGGSSYATSKLDKLGNGNELTFDVTLQQAAKPGDILFEADAPYGTHDIRVMENGKLGFTRELYNYYFDYELPVGKTVTVTIKVDQQTTKLYVDGEFVSDATGKYIDKGIEKKTGITAATFALPLQRIGSKTSAINGVIDNVIVKKSEAETDQYNKSCWTGTTNSETQYNDTEGLLRYAFDNNPSTIWHSNWKGATDKLTGSNSFYAEIDMCQKYTINQFSFTPRTSQDSGQVTKADLYVKANANDEWKQVATDQVFEASRAKKTFMFDEQEVRYVKFVAKSSNDGWVAVSEFGVTNKPSSTVRVFVAAEPAEGGTVSVAAEGETGTDTAVDVASGASVTAKAVAADGYRFSGWFTTASETAVSTDATYTFAADGNTALTAKFTKDSTPDPGPKPTISSIAVTKPTVTDYKVGDTFDATGLAVTATMSDGSTKTLTAGEYTLAATQDGAAVALDEAFAKAGKVTVTVTANGKTATFDVTVTAKDPDPEPATLKSIKVTSRPDKATYTVDETFAKTGLAVTGTWSDGKTALLKDGEYKLSAVDADGKTVDLTKPFTAAGDVTVTVTSGKLTDSFTITVKAKTVTPTPGDNKPGENKPGADKPKPNTPDEVAKTGASVTAVVFSALLLLSAGYLLVRKRRI
>NZ_AP012323.1|WP_003819143.1|1828945_1829458_-|50S-ribosomal-protein-L17
MPTPKKGPRLASSPAHERLMLANMATSLFQHGRITTTLPKAKRLRPLAERLITFAKRGDLHSRRRVMRVIRNKSVVHVLFTQIAEQMEQREGGYTRIVKIAPRKGDSTPAAVIELVTEPVSPKKAVVKEAEAATKVAAATEAPVEETAAAEAPVEAPAETAAEETADKAE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

53412 : 118566

Escherichia_phage(13.33%)

tRNA,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014759675.1\|53412_54510_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_003815101.1\|54650_55031_+	DUF3073 domain-containing protein	NA	NA	NA	NA
WP_013389343.1\|55873_56479_+	sensor histidine kinase	NA	NA	NA	NA
WP_033509620.1\|56666_57692_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	4.2e-76	46.5
WP_021647511.1\|58033_60637_+	RICIN domain-containing protein	A0A1U9WQS3	Geobacillus_phage	3.2e-16	30.8
WP_033509590.1\|60709_61654_-	glycosyltransferase	NA	NA	NA	NA
WP_021647508.1\|64642_65758_+	acyltransferase	NA	NA	NA	NA
WP_033509626.1\|65957_67538_+	hypothetical protein	NA	NA	NA	NA
WP_021647506.1\|67611_70647_-	DUF4422 domain-containing protein	A0A1V0SAH6	Catovirus	3.2e-07	31.1
WP_051265168.1\|70874_71675_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_033509628.1\|72250_73924_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA
WP_161788265.1\|74101_74368_-	cell wall-binding repeat-containing protein	NA	NA	NA	NA
WP_126436126.1\|74436_74619_-	cell wall-binding repeat-containing protein	NA	NA	NA	NA
WP_021647502.1\|74698_75451_-	ATP-binding protein	A0A0D4DBZ2	Acinetobacter_phage	9.7e-06	24.1
WP_021647501.1\|75457_77008_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_126436125.1\|77055_77352_-	hypothetical protein	NA	NA	NA	NA
WP_021647500.1\|78177_79407_-	cell wall-binding repeat-containing protein	NA	NA	NA	NA
WP_161788266.1\|79868_80708_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA
WP_080665028.1\|80688_81228_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA
WP_161788267.1\|81321_87471_-	InlB B-repeat-containing protein	A0A1B0T6A2	Bacillus_phage	1.2e-08	32.6
WP_013141402.1\|87683_88982_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.2e-05	21.8
WP_007052892.1\|88984_89818_-	ABC transporter permease	NA	NA	NA	NA
WP_021647494.1\|89956_91843_+	DUF4422 domain-containing protein	NA	NA	NA	NA
WP_021647493.1\|91903_93148_-	nucleotide sugar dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	4.5e-101	52.2
WP_021647491.1\|93538_94819_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_117726484.1\|95076_96344_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	8.0e-37	40.9
WP_033509601.1\|96566_96770_+	hypothetical protein	NA	NA	NA	NA
WP_117726483.1\|97548_98175_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.2e-06	37.5
WP_051265164.1\|98184_99507_-	beta-glucosidase	NA	NA	NA	NA
WP_021647483.1\|99648_100827_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	4.4e-37	32.7
WP_033509605.1\|101117_102296_+	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	4.7e-92	44.2
WP_080665026.1\|102354_102990_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_033509607.1\|102993_104781_-	hypothetical protein	NA	NA	NA	NA
WP_033509636.1\|104912_105935_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.8e-78	48.8
WP_021647476.1\|106273_107545_-	MFS transporter	NA	NA	NA	NA
WP_033509638.1\|107701_108364_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003811360.1\|108958_109144_+	hypothetical protein	NA	NA	NA	NA
WP_013362931.1\|109374_111426_+	DHA2 family efflux MFS transporter permease subunit	A0A2H4PQR6	Staphylococcus_phage	1.5e-05	25.7
WP_080545183.1\|112191_112485_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.4e-07	43.2
WP_003811371.1\|112906_113251_-	hypothetical protein	NA	NA	NA	NA
WP_003811373.1\|113456_113864_-	hypothetical protein	NA	NA	NA	NA
WP_003811376.1\|114200_116654_+	glycogen/starch/alpha-glucan phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	4.5e-12	43.7
WP_080545144.1\|116822_117065_-	hypothetical protein	NA	NA	NA	NA
WP_003811385.1\|117372_117594_-	hypothetical protein	NA	NA	NA	NA
WP_021647471.1\|117780_118566_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_2

1075369 : 1116434

Bifidobacterium_phage(96.36%)

tail,terminase,tRNA,integrase,portal,capsid

attL 1075422:1075438|attR 1111172:1111188

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013389848.1\|1075369_1076470_+\|tRNA	tRNA (adenine-N1)-methyltransferase	NA	NA	NA	NA
1075422:1075438	attL	NA	NA	NA	NA
WP_021648663.1\|1076589_1077147_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_003812969.1\|1077402_1078623_+\|integrase	site-specific integrase	I3NLE2	Bifidobacterium_phage	4.6e-239	98.0
WP_021648662.1\|1078712_1079240_+	ImmA/IrrE family metallo-endopeptidase	Q854W5	Mycobacterium_virus	1.6e-18	38.9
WP_021648661.1\|1079236_1079728_+	hypothetical protein	NA	NA	NA	NA
WP_047937777.1\|1079791_1080184_-	ImmA/IrrE family metallo-endopeptidase	I3NLD5	Bifidobacterium_phage	6.7e-51	83.8
WP_003816210.1\|1080422_1081451_-	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	2.4e-71	42.6
WP_021648658.1\|1081495_1081897_-	hypothetical protein	I3NLD3	Bifidobacterium_phage	5.0e-17	67.6
WP_021648657.1\|1082020_1082266_+	helix-turn-helix domain-containing protein	I3NLD2	Bifidobacterium_phage	4.2e-35	98.8
WP_021648656.1\|1082650_1083142_-	hypothetical protein	I3NLD1	Bifidobacterium_phage	1.5e-15	69.8
WP_021648655.1\|1083166_1083961_+	phage antirepressor KilAC domain-containing protein	I3NLD0	Bifidobacterium_phage	1.6e-123	85.8
WP_003812999.1\|1084108_1084564_-	hypothetical protein	I3NLC9	Bifidobacterium_phage	2.5e-65	99.1
WP_033509676.1\|1084845_1085088_-	hypothetical protein	I3NLC8	Bifidobacterium_phage	6.4e-28	96.9
WP_003813003.1\|1085207_1085441_+	DNA-binding protein	I3NLC7	Bifidobacterium_phage	8.0e-36	97.4
WP_003820450.1\|1085469_1085685_+	hypothetical protein	I3NLC6	Bifidobacterium_phage	1.3e-19	98.0
WP_021647707.1\|1085681_1085918_+	hypothetical protein	I3NLC5	Bifidobacterium_phage	3.6e-36	96.1
WP_021647708.1\|1086195_1086540_+	hypothetical protein	I3NLC4	Bifidobacterium_phage	3.3e-54	94.7
WP_021647709.1\|1086539_1087070_+	single-stranded DNA-binding protein	I3NLC3	Bifidobacterium_phage	2.5e-93	99.4
WP_021647710.1\|1087088_1088486_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	3.1e-276	99.8
WP_021647711.1\|1088482_1089376_+	helix-turn-helix domain-containing protein	I3NLC1	Bifidobacterium_phage	5.7e-146	87.9
WP_003813015.1\|1089372_1089564_+	hypothetical protein	I3NLC0	Bifidobacterium_phage	3.3e-27	100.0
WP_003813016.1\|1089560_1089965_+	hypothetical protein	I3NLB9	Bifidobacterium_phage	5.8e-82	100.0
WP_033509679.1\|1089961_1090543_+	oligoribonuclease	I3NLB8	Bifidobacterium_phage	4.2e-110	99.5
WP_003813021.1\|1090539_1090818_+	hypothetical protein	I3NLB7	Bifidobacterium_phage	4.9e-48	100.0
WP_003813023.1\|1090814_1091120_+	hypothetical protein	I3NLB6	Bifidobacterium_phage	6.8e-51	100.0
WP_003813024.1\|1091122_1091320_+	hypothetical protein	I3NLB5	Bifidobacterium_phage	4.7e-29	100.0
WP_021647714.1\|1091363_1092113_+	hypothetical protein	I3NLB4	Bifidobacterium_phage	2.2e-143	97.2
WP_021647715.1\|1092133_1092343_+	type II toxin-antitoxin system HicA family toxin	I3NLB3	Bifidobacterium_phage	2.0e-33	98.5
WP_003820654.1\|1092339_1092750_+	type II toxin-antitoxin system HicB family antitoxin	I3NLB2	Bifidobacterium_phage	3.5e-74	99.3
WP_003813031.1\|1092751_1092919_+	transcriptional regulator	I3NLB1	Bifidobacterium_phage	4.6e-25	100.0
WP_003813034.1\|1093071_1093275_-	hypothetical protein	I3NLB0	Bifidobacterium_phage	7.2e-33	100.0
WP_021647724.1\|1093264_1093423_-	hypothetical protein	I3NLA9	Bifidobacterium_phage	8.7e-18	90.4
WP_033509722.1\|1093725_1094094_+	HNH endonuclease	I3NLA7	Bifidobacterium_phage	1.5e-36	98.6
WP_013389872.1\|1094379_1094967_+	bifunctional DNA primase/polymerase	I3NLA6	Bifidobacterium_phage	1.5e-115	100.0
WP_003813042.1\|1094986_1095376_+	hypothetical protein	I3NLA5	Bifidobacterium_phage	1.4e-69	100.0
WP_013389873.1\|1095375_1097178_+\|terminase	terminase	I3NLA4	Bifidobacterium_phage	0.0e+00	100.0
WP_021647727.1\|1097171_1098578_+\|portal	phage portal protein	I3NLA3	Bifidobacterium_phage	5.2e-279	99.4
WP_013389875.1\|1098561_1099776_+	EndoU domain-containing protein	I3NLA2	Bifidobacterium_phage	2.2e-241	100.0
WP_003816704.1\|1099772_1100033_+	hypothetical protein	I3NLA1	Bifidobacterium_phage	1.8e-44	100.0
WP_021647728.1\|1100340_1100904_+	hypothetical protein	I3NLA0	Bifidobacterium_phage	8.4e-79	86.7
WP_003816701.1\|1100933_1101890_+\|capsid	phage major capsid protein	I3NL99	Bifidobacterium_phage	3.6e-175	99.4
WP_003816698.1\|1101889_1102324_+	hypothetical protein	I3NL98	Bifidobacterium_phage	2.0e-64	98.6
WP_021648013.1\|1102337_1102835_+	hypothetical protein	I3NL97	Bifidobacterium_phage	4.9e-91	99.4
WP_003813058.1\|1102831_1103266_+	hypothetical protein	I3NL96	Bifidobacterium_phage	1.4e-44	98.9
WP_003813060.1\|1103255_1103684_+	hypothetical protein	I3NL95	Bifidobacterium_phage	1.4e-73	100.0
WP_003813063.1\|1103680_1104091_+	transcriptional regulator	I3NL94	Bifidobacterium_phage	8.5e-73	100.0
WP_003823514.1\|1104164_1104707_+	hypothetical protein	I3NL93	Bifidobacterium_phage	1.0e-94	99.4
WP_003823512.1\|1104801_1105308_+	DNAase primase	I3NL92	Bifidobacterium_phage	3.8e-83	98.2
WP_003813069.1\|1105370_1105667_+	hypothetical protein	I3NL91	Bifidobacterium_phage	6.4e-54	100.0
WP_021648014.1\|1105677_1108812_+\|tail	phage tail tape measure protein	I3NL90	Bifidobacterium_phage	0.0e+00	98.9
WP_033509685.1\|1108808_1109588_+	3-hydroxy-3-methylglutaryl CoA synthase	I3NL89	Bifidobacterium_phage	7.9e-144	97.2
WP_021648016.1\|1109589_1111452_+\|tail	phage tail protein	I3NL88	Bifidobacterium_phage	0.0e+00	98.1
1111172:1111188	attR	NA	NA	NA	NA
WP_021648017.1\|1111462_1111858_+	hypothetical protein	I3NL87	Bifidobacterium_phage	1.4e-64	97.7
WP_021648018.1\|1111854_1113687_+	hypothetical protein	I3NL86	Bifidobacterium_phage	2.8e-208	96.2
WP_033509724.1\|1113787_1114561_+	hypothetical protein	I3NL85	Bifidobacterium_phage	3.6e-72	99.6
WP_003822313.1\|1114553_1114961_+	hypothetical protein	I3NL84	Bifidobacterium_phage	3.0e-70	100.0
WP_003813084.1\|1115191_1115617_+	hypothetical protein	I3NL83	Bifidobacterium_phage	1.6e-66	98.6
WP_003816679.1\|1115600_1116434_+	CHAP domain-containing protein	I3NL82	Bifidobacterium_phage	2.9e-128	98.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP012323

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection