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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011386 Lactobacillus helveticus strain MB2-1, complete genome 5 crisprs cas14j,cas3,Cas14u_CAS-V,cas14k,DinG,DEDDh,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,csa3 3 8 13 0

Results visualization

1. NZ_CP011386
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011386_1 372695-372830 Unclear NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011386_2 531455-531637 TypeV NA
2 spacers
cas14k

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011386_3 741665-741768 TypeV NA
1 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011386_4 1524688-1524776 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011386_5 1644308-1647001 Unclear NA
40 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP011386_5 5.30|1646279|36|NZ_CP011386|CRISPRCasFinder,CRT,PILER-CR 1646279-1646314 36 NZ_CP011386.1 2079068-2079103 0 1.0
NZ_CP011386_5 5.40|1646935|37|NZ_CP011386|CRISPRCasFinder,CRT,PILER-CR 1646935-1646971 37 NZ_CP011386.1 826561-826597 0 1.0
NZ_CP011386_5 5.14|1645223|36|NZ_CP011386|CRISPRCasFinder,CRT 1645223-1645258 36 NZ_CP011386.1 930490-930525 1 0.972

1. spacer 5.30|1646279|36|NZ_CP011386|CRISPRCasFinder,CRT,PILER-CR matches to position: 2079068-2079103, mismatch: 0, identity: 1.0

gcagatattgattatgagatgatcgaaggcttagca	CRISPR spacer
gcagatattgattatgagatgatcgaaggcttagca	Protospacer
************************************

2. spacer 5.40|1646935|37|NZ_CP011386|CRISPRCasFinder,CRT,PILER-CR matches to position: 826561-826597, mismatch: 0, identity: 1.0

aagtttttaggatttttgtatgaaaattctgacattg	CRISPR spacer
aagtttttaggatttttgtatgaaaattctgacattg	Protospacer
*************************************

3. spacer 5.14|1645223|36|NZ_CP011386|CRISPRCasFinder,CRT matches to position: 930490-930525, mismatch: 1, identity: 0.972

tgattagattgtaaggaattgtagtcagctactaat	CRISPR spacer
tgattcgattgtaaggaattgtagtcagctactaat	Protospacer
***** ******************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011386_3 3.1|741700|34|NZ_CP011386|CRISPRCasFinder 741700-741733 34 NC_005355 Lactobacillus prophage Lj965, complete genome 10514-10547 3 0.912
NZ_CP011386_3 3.1|741700|34|NZ_CP011386|CRISPRCasFinder 741700-741733 34 AY459535 Lactobacillus johnsonii prophage Lj965, complete genome 10514-10547 3 0.912
NZ_CP011386_5 5.36|1646673|36|NZ_CP011386|CRISPRCasFinder,CRT,PILER-CR 1646673-1646708 36 MN855636 Bacteriophage sp. isolate 140, complete genome 936-971 7 0.806
NZ_CP011386_5 5.8|1644801|35|NZ_CP011386|CRISPRCasFinder,CRT 1644801-1644835 35 NZ_CP038863 Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence 35302-35336 9 0.743
NZ_CP011386_5 5.22|1645750|35|NZ_CP011386|CRISPRCasFinder,CRT,PILER-CR 1645750-1645784 35 NZ_CP019991 Enterococcus faecium isolate 2014-VREF-63 plasmid p63-3 15682-15716 9 0.743
NZ_CP011386_5 5.46|1644802|35|NZ_CP011386|PILER-CR 1644802-1644836 35 NZ_CP038863 Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence 35302-35336 9 0.743
NZ_CP011386_5 5.11|1645000|35|NZ_CP011386|CRISPRCasFinder,CRT 1645000-1645034 35 MN694447 Marine virus AFVG_250M387, complete genome 11213-11247 10 0.714
NZ_CP011386_5 5.21|1645685|35|NZ_CP011386|CRISPRCasFinder,CRT,PILER-CR 1645685-1645719 35 MN694447 Marine virus AFVG_250M387, complete genome 11213-11247 10 0.714
NZ_CP011386_5 5.49|1645001|35|NZ_CP011386|PILER-CR 1645001-1645035 35 MN694447 Marine virus AFVG_250M387, complete genome 11213-11247 10 0.714

1. spacer 3.1|741700|34|NZ_CP011386|CRISPRCasFinder matches to NC_005355 (Lactobacillus prophage Lj965, complete genome) position: , mismatch: 3, identity: 0.912

ataaaaagggtgaacgaatcgttaccccctctgg	CRISPR spacer
atttaaggggtgaacgaatcgttaccccctctgg	Protospacer
**  **.***************************

2. spacer 3.1|741700|34|NZ_CP011386|CRISPRCasFinder matches to AY459535 (Lactobacillus johnsonii prophage Lj965, complete genome) position: , mismatch: 3, identity: 0.912

ataaaaagggtgaacgaatcgttaccccctctgg	CRISPR spacer
atttaaggggtgaacgaatcgttaccccctctgg	Protospacer
**  **.***************************

3. spacer 5.36|1646673|36|NZ_CP011386|CRISPRCasFinder,CRT,PILER-CR matches to MN855636 (Bacteriophage sp. isolate 140, complete genome) position: , mismatch: 7, identity: 0.806

aataccttgtcaattccactaataccattgttgact	CRISPR spacer
aataccttgtcaattccagtaataccacgattaatc	Protospacer
****************** ********. .**.*..

4. spacer 5.8|1644801|35|NZ_CP011386|CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

aaagtccaacgaccaaaagaaaggatatagataga	CRISPR spacer
ttcattaaacgattaaaagaaaggatatagataaa	Protospacer
   .*. *****..*******************.*

5. spacer 5.22|1645750|35|NZ_CP011386|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019991 (Enterococcus faecium isolate 2014-VREF-63 plasmid p63-3) position: , mismatch: 9, identity: 0.743

agcaagctctttgtagttttctactt----tttttgaaa	CRISPR spacer
gttaagctctttgtagtgttcttcttttgcttttt----	Protospacer
. .************** **** ***    *****    

6. spacer 5.46|1644802|35|NZ_CP011386|PILER-CR matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

aaagtccaacgaccaaaagaaaggatatagataga	CRISPR spacer
ttcattaaacgattaaaagaaaggatatagataaa	Protospacer
   .*. *****..*******************.*

7. spacer 5.11|1645000|35|NZ_CP011386|CRISPRCasFinder,CRT matches to MN694447 (Marine virus AFVG_250M387, complete genome) position: , mismatch: 10, identity: 0.714

gatgatctaaataaacatacttatactgctaagca	CRISPR spacer
acacaagtaaataaaaatacttatattgctaagac	Protospacer
.   *  ******** *********.*******  

8. spacer 5.21|1645685|35|NZ_CP011386|CRISPRCasFinder,CRT,PILER-CR matches to MN694447 (Marine virus AFVG_250M387, complete genome) position: , mismatch: 10, identity: 0.714

gatgatctaaataaacatacttatactgctaagca	CRISPR spacer
acacaagtaaataaaaatacttatattgctaagac	Protospacer
.   *  ******** *********.*******  

9. spacer 5.49|1645001|35|NZ_CP011386|PILER-CR matches to MN694447 (Marine virus AFVG_250M387, complete genome) position: , mismatch: 10, identity: 0.714

gatgatctaaataaacatacttatactgctaagca	CRISPR spacer
acacaagtaaataaaaatacttatattgctaagac	Protospacer
.   *  ******** *********.*******  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 372945 : 382618 7 uncultured_virus(50.0%) integrase attL 366675:366703|attR 374169:374197
DBSCAN-SWA_2 449852 : 484012 31 Lactobacillus_virus(20.0%) integrase,transposase,holin attL 478256:478315|attR 486253:486327
DBSCAN-SWA_3 492297 : 575061 58 Bacillus_phage(18.18%) transposase,tRNA NA
DBSCAN-SWA_4 852554 : 913504 47 Lactobacillus_phage(30.43%) terminase,protease,head,integrase,transposase attL 864567:864584|attR 906108:906125
DBSCAN-SWA_5 1274821 : 1332961 66 Lactobacillus_phage(50.0%) integrase,transposase,terminase attL 1304349:1304365|attR 1317989:1318005
DBSCAN-SWA_6 1349769 : 1452413 109 Lactobacillus_phage(55.32%) tRNA,capsid,protease,head,terminase,integrase,transposase,holin,portal,tail attL 1404686:1404702|attR 1450883:1450899
DBSCAN-SWA_7 1471408 : 1541541 53 Streptococcus_phage(33.33%) protease,transposase NA
DBSCAN-SWA_8 1562941 : 1573238 9 Prochlorococcus_phage(16.67%) NA NA
DBSCAN-SWA_9 1677621 : 1728343 54 Aureococcus_anophage(22.22%) transposase,tRNA NA
DBSCAN-SWA_10 1741576 : 1824368 57 Staphylococcus_phage(12.5%) protease,transposase,tRNA NA
DBSCAN-SWA_11 1832784 : 1882435 47 Clostridioides_phage(15.38%) bacteriocin,transposase NA
DBSCAN-SWA_12 1921858 : 1984690 50 Lactococcus_phage(18.18%) bacteriocin,transposase,holin NA
DBSCAN-SWA_13 1989069 : 2051235 53 Lactobacillus_virus(11.76%) protease,transposase,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage