CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011377	Moraxella bovoculi strain 23343, complete genome	1 crisprs	cas12a,cas4,cas1,cas2,c2c9_V-U4,cas3,DEDDh,WYL,cas14j	0	7	5	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011377_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011377_1

50580-51506

TypeI-A,TypeV-A

Consensus_repeat	Method
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	PILER-CR
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CRISPRCasFinder
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CRT

14 spacers

cas2,cas1,cas4,cas12a,csa3

The CRISPR arrays of NZ_CP011377_1

>merge|NZ_CP011377|1|50580-51506|PILER-CR,CRISPRCasFinder,CRT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATACAGTATGTATTAACGAATTGGGCGATGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATCAATCTCAAAATTGACCCTATCTTGATTTGGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATAGTGATTTCCACCCCACGGCTTGCCAAGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATTTACTAAAAGCATACAGTCTGTTATAGGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATCCCATTCTAAGCTTGCGATTGCCATAAGTGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATAATGTTTTGGTAAATGTCCATTGTGCCGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATAGAAAGCGACAGATGGGCGAGTAACAGGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATCAGACGGTGGTGCGTGATTTGTCAGCACGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATTCATGGCGTAGTTGCTACGCTGTAATGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATTGGGAATATTATAGCAGATTTATTTAATTGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATCTAAATGCCGTGTCGTTTTGGTTCTTATGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATCTGTGGCTTTCATGTCACACCTCTCAGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATGGAACCTGTTCGCCGCTTGGATGTTACGTCTAACGACCTTTTAAATTTCTACTGTTTGTAGATGTCTTGGATAGTATGCAGTCGCATCAGCGGTCTAACGACCTTTTAAATTTCTACTGTTCTTTTAA

>NZ_CP011377|1|1|50580-51441|PILER-CR
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ACAGTATGTATTAACGAATTGGGCGAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CAATCTCAAAATTGACCCTATCTTGATTTG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	AGTGATTTCCACCCCACGGCTTGCCAA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TTACTAAAAGCATACAGTCTGTTATAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CCCATTCTAAGCTTGCGATTGCCATAAGT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	AATGTTTTGGTAAATGTCCATTGTGCC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	AGAAAGCGACAGATGGGCGAGTAACAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CAGACGGTGGTGCGTGATTTGTCAGCAC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TCATGGCGTAGTTGCTACGCTGTAAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TGGGAATATTATAGCAGATTTATTTAATT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTAAATGCCGTGTCGTTTTGGTTCTTAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTGTGGCTTTCATGTCACACCTCTCA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GGAACCTGTTCGCCGCTTGGATGTTAC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT

>NZ_CP011377|1|1|50580-51506|CRISPRCasFinder
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ACAGTATGTATTAACGAATTGGGCGAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CAATCTCAAAATTGACCCTATCTTGATTTG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	AGTGATTTCCACCCCACGGCTTGCCAA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TTACTAAAAGCATACAGTCTGTTATAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CCCATTCTAAGCTTGCGATTGCCATAAGT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	AATGTTTTGGTAAATGTCCATTGTGCC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	AGAAAGCGACAGATGGGCGAGTAACAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CAGACGGTGGTGCGTGATTTGTCAGCAC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TCATGGCGTAGTTGCTACGCTGTAAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TGGGAATATTATAGCAGATTTATTTAATT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTAAATGCCGTGTCGTTTTGGTTCTTAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTGTGGCTTTCATGTCACACCTCTCA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GGAACCTGTTCGCCGCTTGGATGTTAC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GTCTTGGATAGTATGCAGTCGCATCAGCG
GTCTAACGACCTTTTAAATTTCTACTGTTCTTTTAA

>NZ_CP011377|1|1|50580-51506|CRT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	ACAGTATGTATTAACGAATTGGGCGAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CAATCTCAAAATTGACCCTATCTTGATTTG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	AGTGATTTCCACCCCACGGCTTGCCAA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TTACTAAAAGCATACAGTCTGTTATAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CCCATTCTAAGCTTGCGATTGCCATAAGT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	AATGTTTTGGTAAATGTCCATTGTGCC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	AGAAAGCGACAGATGGGCGAGTAACAG
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CAGACGGTGGTGCGTGATTTGTCAGCAC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TCATGGCGTAGTTGCTACGCTGTAAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	TGGGAATATTATAGCAGATTTATTTAATT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTAAATGCCGTGTCGTTTTGGTTCTTAT
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	CTGTGGCTTTCATGTCACACCTCTCA
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GGAACCTGTTCGCCGCTTGGATGTTAC
GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT	GTCTTGGATAGTATGCAGTCGCATCAGCG
GTCTAACGACCTTTTAAATTTCTACTGTTCTTTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011377.1\|WP_046695840.1\|51654_52566_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP011377.1\|WP_046695842.1\|54002_55505_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP011377.1\|WP_080945869.1\|49103_50132_+\|type-V-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|213942
NZ_CP011377.1\|WP_046695838.1\|44703_48489_+\|type-V-CRISPR-associated-protein-Cas12a/Cpf1	cas12a	cas12a_cpf1_CAS-V-A	gnl\|CDD\|275131
NZ_CP011377.1\|WP_046695844.1\|56982_58074_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|275201
NZ_CP011377.1\|WP_046695846.1\|59137_61525_+\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NZ_CP011377.1\|WP_080702176.1\|63898_64288_+\|succinate-dehydrogenase,-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|181900
NZ_CP011377.1\|WP_046695837.1\|43157_44369_+\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NZ_CP011377.1\|WP_046695834.1\|39796_40786_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP011377.1\|WP_046695839.1\|50128_50398_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP011377.1\|WP_046695847.1\|61697_62972_-\|citrate-(Si)-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP011377.1\|WP_046695845.1\|58127_58862_-\|two-component-system-response-regulator-OmpR	unknown	unknown	gnl\|CDD\|181883
NZ_CP011377.1\|WP_080947459.1\|48535_49090_+\|type-V-CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|213941
NZ_CP011377.1\|WP_080947458.1\|39073_39577_+\|DUF4442-domain-containing-protein	unknown	unknown	gnl\|CDD\|370533
NZ_CP011377.1\|WP_046695843.1\|55777_56986_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|275200
NZ_CP011377.1\|WP_046695841.1\|52659_53856_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP011377.1\|WP_046695836.1\|42380_42881_+\|putative-4-hydroxy-4-methyl-2-oxoglutarate-aldolase	unknown	unknown	gnl\|CDD\|236487
NZ_CP011377.1\|WP_080945867.1\|41361_42264_+\|pseudouridylate-synthase	unknown	unknown	gnl\|CDD\|211332
NZ_CP011377.1\|WP_046695835.1\|40899_41214_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NZ_CP011377.1\|WP_046695848.1\|64287_64644_+\|succinate-dehydrogenase,-hydrophobic-membrane-anchor-protein	unknown	unknown	gnl\|CDD\|239574

Protein	Function_ID	Function_description	E-value
NZ_CP011377.1\|WP_046695840.1\|51654_52566_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.17737e-62
NZ_CP011377.1\|WP_046695842.1\|54002_55505_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP011377.1\|WP_080945869.1\|49103_50132_+\|type-V-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|213942	TIGR04329, hypothetical_protein_SbacW_07302_partial, CRISPR-associated endonuclease Cas1, subtype PREFRAN. Members of this family are the Cas1 endonuclease of a novel CRISPR subtype, PREFRAN, found in Prevotella bryantii B14, Prevotella disiens FB035-09AN, Francisella tularensis subsp. novicida, Francisella philomiragia, Butyrivibrio proteoclasticus B316, Helcococcus kunzii ATCC 51366, etc.	4.68174e-108
NZ_CP011377.1\|WP_046695838.1\|44703_48489_+\|type-V-CRISPR-associated-protein-Cas12a/Cpf1	gnl\|CDD\|275131	TIGR04330, conserved_hypothetical_protein, CRISPR-associated protein Cpf1, subtype PREFRAN. This family is the long protein of a novel CRISPR subtype, PREFRAN, which is most common in Prevotella and Francisella, although widely distributed. The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the helicase Cas3 and endonuclease Cas3-HD.	0
NZ_CP011377.1\|WP_046695844.1\|56982_58074_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|275201	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG. Members of this family are LptG, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptF (TIGR04407). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	2.4888e-88
NZ_CP011377.1\|WP_046695846.1\|59137_61525_+\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NZ_CP011377.1\|WP_080702176.1\|63898_64288_+\|succinate-dehydrogenase,-cytochrome-b556-subunit	gnl\|CDD\|181900	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit.	1.42495e-26
NZ_CP011377.1\|WP_046695837.1\|43157_44369_+\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NZ_CP011377.1\|WP_046695834.1\|39796_40786_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	2.09894e-164
NZ_CP011377.1\|WP_046695839.1\|50128_50398_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.09985e-14
NZ_CP011377.1\|WP_046695847.1\|61697_62972_-\|citrate-(Si)-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP011377.1\|WP_046695845.1\|58127_58862_-\|two-component-system-response-regulator-OmpR	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	2.3517e-163
NZ_CP011377.1\|WP_080947459.1\|48535_49090_+\|type-V-CRISPR-associated-protein-Cas4	gnl\|CDD\|213941	TIGR04328, hypothetical_protein_HMPREF9709_01098, CRISPR-associated protein Cas4, subtype PREFRAN. Members of this family are the Cas4 protein of a novel CRISPR subtype, PREFRAN, found in Prevotella bryantii B14, Prevotella disiens FB035-09AN, Francisella tularensis subsp. novicida, Francisella philomiragia, Butyrivibrio proteoclasticus B316, Helcococcus kunzii ATCC 51366, etc.	3.1384e-68
NZ_CP011377.1\|WP_080947458.1\|39073_39577_+\|DUF4442-domain-containing-protein	gnl\|CDD\|370533	pfam09500, YiiD_C, Putative thioesterase (yiiD_Cterm). This entry consists of a broadly distributed uncharacterized domain often found as a standalone protein. The member from Shewanella oneidensis is described from crystallography work as a putative thioesterase because it belongs to the HotDog clan of enzymes. About half of the members of this family are fused to an Acetyltransf_1 domain pfam00583.	7.05668e-36
NZ_CP011377.1\|WP_046695843.1\|55777_56986_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|275200	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF. Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	1.65192e-80
NZ_CP011377.1\|WP_046695841.1\|52659_53856_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP011377.1\|WP_046695836.1\|42380_42881_+\|putative-4-hydroxy-4-methyl-2-oxoglutarate-aldolase	gnl\|CDD\|236487	PRK09372, PRK09372, ribonuclease E inhibitor RraA.	2.64846e-87
NZ_CP011377.1\|WP_080945867.1\|41361_42264_+\|pseudouridylate-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	1.55812e-112
NZ_CP011377.1\|WP_046695835.1\|40899_41214_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	3.91964e-13
NZ_CP011377.1\|WP_046695848.1\|64287_64644_+\|succinate-dehydrogenase,-hydrophobic-membrane-anchor-protein	gnl\|CDD\|239574	cd03494, SQR_TypeC_SdhD, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. E. coli SQR, a member of this subfamily, reduces the high potential quinine, ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. SdhD and SdhC are the two transmembrane proteins of bacterial SQRs. They contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	2.52414e-31

>NZ_CP011377.1|WP_046695839.1|50128_50398_+|CRISPR-associated-endonuclease-Cas2
MIIVSYDISDNKVRGRFAKFLMQYGDRLQYSVYEIQNSERILNIITEKIKAEFEPLFAGADSVIIFRFTEREVLRFGHAKHRNEDLLIL
>NZ_CP011377.1|WP_080945869.1|49103_50132_+|type-V-CRISPR-associated-endonuclease-Cas1
MLSISDIKEKQMILLNNLEGGYHLCISQGNIIIKNKDSDETLTKITRHKAMALMIIGYCTLTNVLIEFCQKYGIALILLNSRLRPILFVSSFGEANYLLRQKQYAIGDNQALNFAKHFIEQKANNSITLLKGIRKKDDELRQMIETLADYQRQIDQTKRLDELMGIEGNIAKSYFKYHFGQLKHTSWQGRKPRLKIDSVNVVLDMGYTLLFNYIEINLRLFGFDVYKGMLHQLWYKRKSLVCDLVEPFRCIVDKQVLTSFNLGQFKTEHFNQIKMQYQLKTEHQRIYNAILMQAIIAHKVPIFVYVRDFYRAYMKYADKDMAFDELVLMLPSFDIQANGEDV
>NZ_CP011377.1|WP_080947459.1|48535_49090_+|type-V-CRISPR-associated-protein-Cas4
MEYHTLNISQLNDFIFCPYSIYLNNVYQALDDDTYHDTPQVKGKIAHEGVDNGTYSTKKTVITAMAVHSDKYGLTGKIDQYFADSKKLIERKRTIKTIYDGYKLQLYAQYFCLVEMGFEVDYLGFYSMTDNKSHALALPDDEIIDWFENYLYKIRHYNLMTDDIYINTNKCTHCIYQPLCDKTD
>NZ_CP011377.1|WP_046695838.1|44703_48489_+|type-V-CRISPR-associated-protein-Cas12a/Cpf1
MLFQDFTHLYPLSKTVRFELKPIGKTLEHIHAKNFLNQDETMADMYQKVKAILDDYHRDFIADMMGEVKLTKLAEFYDVYLKFRKNPKDDGLQKQLKDLQAVLRKEIVKPIGNGGKYKAGYDRLFGAKLFKDGKELGDLAKFVIAQEGESSPKLAHLAHFEKFSTYFTGFHDNRKNMYSDEDKHTAIAYRLIHENLPRFIDNLQILATIKQKHSALYDQIINELTASGLDVSLASHLDGYHKLLTQEGITAYNTLLGGISGEAGSRKIQGINELINSHHNQHCHKSERIAKLRPLHKQILSDGMGVSFLPSKFADDSEVCQAVNEFYRHYADVFAKVQSLFDGFDDYQKDGIYVEYKNLNELSKQAFGDFALLGRVLDGYYVDVVNPEFNERFAKAKTDNAKAKLTKEKDKFIKGVHSLASLEQAIEHYTARHDDESVQAGKLGQYFKHGLAGVDNPIQKIHNNHSTIKGFLERERPAGERALPKIKSDKSPEIRQLKELLDNALNVAHFAKLLTTKTTLHNQDGNFYGEFGALYDELAKIATLYNKVRDYLSQKPFSTEKYKLNFGNPTLLNGWDLNKEKDNFGVILQKDGCYYLALLDKAHKKVFDNAPNTGKSVYQKMIYKLLPGPNKMLPKVFFAKSNLDYYNPSAELLDKYAQGTHKKGDNFNLKDCHALIDFFKAGINKHPEWQHFGFKFSPTSSYQDLSDFYREVEPQGYQVKFVDINADYINELVEQGQLYLFQIYNKDFSPKAHGKPNLHTLYFKALFSEDNLVNPIYKLNGEAEIFYRKASLDMNETTIHRAGEVLENKNPDNPKKRQFVYDIIKDKRYTQDKFMLHVPITMNFGVQGMTIKEFNKKVNQSIQQYDEVNVIGIDRGERHLLYLTVINSKGEILEQRSLNDITTASANGTQMTTPYHKILDKREIERLNARVGWGEIETIKELKSGYLSHVVHQISQLMLKYNAIVVLEDLNFGFKRGRFKVEKQIYQNFENALIKKLNHLVLKDKADDEIGSYKNALQLTNNFTDLKSIGKQTGFLFYVPAWNTSKIDPETGFVDLLKPRYENIAQSQAFFGKFDKICYNADRGYFEFHIDYAKFNDKAKNSRQIWKICSHGDKRYVYDKTANQNKGATIGVNVNDELKSLFTRYHINDKQPNLVMDICQNNDKEFHKSLMYLLKTLLALRYSNASSDEDFILSPVANDEGVFFNSALADDTQPQNADANGAYHIALKGLWLLNELKNSDDLNKVKLAIDNQTWLNFAQNR
>NZ_CP011377.1|WP_046695837.1|43157_44369_+|serine/threonine-transporter-SstT
MRSLVNAYLKAGLVPMIIAALILGAIVGALLPSVGISVGILGAIFVGALKAVAPILVFVLVIAAVTSYRGGGDLRIKPVFILYLFGTFTAALTAVVASFTFPTELVLVAAENIEQTPPQDLKEVLTTLLMNLVANPVKSLAEANYMGILTWAVLIGLALRHVSETTRQVATDLSAAITNVVKWVIAFAPIGIFGLVAATVAETGLDALLGYGHLLMVLVGCMLFIALVVNPIIVLAVTRENPYPLVLACLRESGVTAFFTRSSAANIPVNMNLARKLGLNEETYSVTIPLGATINMAGAAITINVLTLAAAHTLGLDVSFGSALLLAIIGSLAACGASGVAGGSLLLIPMACSLFSIPNDIAMQVVAIGFIIGVVQDSAETALNSSTDVLFTAAVDPKYAYKG
>NZ_CP011377.1|WP_046695836.1|42380_42881_+|putative-4-hydroxy-4-methyl-2-oxoglutarate-aldolase
MSEFVTCDLLDDNADKDIQVVSPSMDGKFFRSFGGKKAFGGQAVTVKCFEDNSRVKELLATDGAGKVLVVDGGASMRCALLGDMIAESAVKYDWAGVIVYGCVRDVDALTELDLGVHALGCIPQKSTRKGIGETGVTLNFGGVSIKDGAYVYADNNGILVSDAALI
>NZ_CP011377.1|WP_080945867.1|41361_42264_+|pseudouridylate-synthase
MSDFVPPMIAGVSPSTIYLEKLVSPPVDLFTFLCQKFPHVGIPEWRRRFDDGLVFWEDGETTTIDAPYVHGRSVYYYRFLEDEVVVPFAHEVLYENDRFMVVDKPHFLAVTPGGEYVRQTLLTRLKQQTNNPDLSPIHRLDRETAGLILISKDVKTRGIYQSLFSDNAIHKIYHAIAPCNADMVFPMDVHLHLTRGEPFYTMRVDVNTPPNSHTLIHQLETQGDWAKYELHPTTGKLHQLRVHLNHLGMPIKNDPYYPQVKHKARGEFDAPLQLLAKSLSFIDPVTGEQIDFHSRRKLDF
>NZ_CP011377.1|WP_046695835.1|40899_41214_-|helix-turn-helix-transcriptional-regulator
MKSTEIFKVLGNDSRYQILLWLKDPATHFGTDALRCAETGFDGGICVGMIADKSGLAQSVISSYLASLQNAGLIESKRLGKWTYYRYRAQGVRDFIHQITHELN
>NZ_CP011377.1|WP_046695834.1|39796_40786_-|LLM-class-flavin-dependent-oxidoreductase
MTDVSILSLAPFRDGETFTDAVDDLVDLAQRAEKLGYSRYWIAEHHNTPYLASSATSLLIQRVLDKTNTIRVGSGGVMLPNHSPFIVAEQYGTLASLYPNRIDLGLGRAPGTDPQTARAIRRHQDDFAMSFPSDIKELQFYFGDDDQGKKVRAYPAKGLHVPLYILGSSTESAYLAAELGLPYAFASHFAPRFLTQAVDIYRNYFKPSAVLDAPQVIAGINAIIADSDDEAELLSTTSLQFFLNVVTGDRSGMKPPVADIERHVPPHILNMAKSMMACSIIGSPATAKEQIEELQSRIRADELMAVSYIHDKAKQKYSYELFADVVRSL
>NZ_CP011377.1|WP_080947458.1|39073_39577_+|DUF4442-domain-containing-protein
MLTTFPMGYATISTTINIRLIMKPLSYFLDRIPAASSLDIRVLEHDASCVRLLLPYQGNTNHHQTMFGGSLSLATTLAGWAILYENVPKVDGNIVIKSSQMRYLAPAPSDVEVVAELDDMDCQSVKEAFERFGRARVNVVCRLYCDQKDVGHFSGIYVAIKPNDTHQ
>NZ_CP011377.1|WP_046695840.1|51654_52566_+|LysR-family-transcriptional-regulator
MSTTLRQLRAFVLVAEQNSFTKAAETLCLTQSALSGLIKELEQNLDVKLFDRTTRKLHLSDAGMRLLPQARRVLNEMSVLNEKVSNLKSLHQGHIRLAVSQQLSASTMPKFIAKFCELHPHIQVTLTDCSVDDVVEHIENLEADLGVAPERVHSDDLKTDTLFRSPFYLVLPSTHPFAKKDVVRWADLLNERLITLNGPFIKSLQNELPANISNRIFHPDFEINFLSTALGMVRMGLGVTVCLLYAAEWVEQNGLVMRPIAEPVVERNFLLYTHKNRSLSPAAAAFKEFLIENAHEFLVSNPK
>NZ_CP011377.1|WP_046695841.1|52659_53856_+|aspartate/tyrosine/aromatic-aminotransferase
MFNHVEHYAGDPILGLMDKFANDPRTDIKVNLGVGVYYTEDGKLPVLECVKTAEAQIANPPRPRGYLPMDGLAGYKKACQDLLFGKDSQIVKDGRVATIATLGGSGALKVGADFIHEWFPNAKCYVSNPTWANHIGIFEGAGIEVAKYPYYDAQTIGVKFDEMCEFFKGLNENDVVLLHPCCHNPTGVDLTNDQWDVVLDIVKDKKLIAFMDIAYQGFGEDMEGDVYAIRRAVDMGLPIFVSNSFSKNLSLYGERVGGLSVVAPSKEEADRVQGQLKFTVRRIYSSPPSHGNNVVDIVMNDEALFEQWVGEVYEMRDRIREMRQKLQDTLTAKLPERDFSYFTKQRGMFSFTGLTAEQVVRLRDEFAVYMVENGRMCIAGLNNKNVEYVANAMAEVLK
>NZ_CP011377.1|WP_046695842.1|54002_55505_-|leucyl-aminopeptidase
MSIQLSVHSELTLKKATKSNPLPQLVFFADNEGKLLGNIQSEHTARAENLIKKSGFKGELCDVVSDYALSDDGVGITIIGAGKLDKLAKNIQKLGAATYKTIKNHKSAAIVWGDVICQKHFSQFALSLLAASYRFDRYFAKKADADKLAVLSFINNKDSQDDYQAALDLTKATFAGQSFARDLANEAPNNLNPVALAKEAKKLAKEYGDKVKVTILGEKEMTKLGMGCFMSVSQGSDAEGQLVVIEYYGKNKKGSKKAKLDNPIALVGKGITFDTGGISLKPGAGMDEMKFDMGGAAAMLGTTKAVCEAGLEIDLVTVLACAENMPSGKATRPGDIVTAMDGTSVEILNTDAEGRLVLCDALCYVQDNYKPRTIVDAATLTGACVIALGSVRSAVYSNDEDTLFALESAGEHTGDLLWQMPLDDEYASQLKSNFADLQNIGGREGGSITAACFLQHFIKEGQAWAHLDIAGTASLSGASKGATGRPVPMLVQFLKSQENQ
>NZ_CP011377.1|WP_046695843.1|55777_56986_+|LPS-export-ABC-transporter-permease-LptF
MIREVAMTTALVLGFLVVMLLGGRLIRYFGMAAEGGLDVGVLFTLIGYNLPYFLELIFPLSFFIGLMLVFGRLYADHEMVVLNASGISRGRVSRLIIPLVLVAFLAQGFITLVAKPWGVAKAANIWQEQSVLKIFDIITPRKFISSGEYHLYVGEIGENREYLQDVIVIQMAKNPDLRNAASMSDIAHQDDQADNAQKAQEIATRIPQELISEKDTIIFAKSATQVDSDDGVIRLDLHQGRRYEVDATSKKYSQIGFERYRISLAASSNEDLKPLKIEGWRTQDLFANMNTPNQTPSSQEIHAELGYRFSLPWLILIAAILAAPLAQVKPRQGRWLKLIPALFIFVANVLILISLKESIAKGKVGDWAYPVVLAVLFAVAIYINYHERMMAKLRLNRQGGAA
>NZ_CP011377.1|WP_046695844.1|56982_58074_+|LPS-export-ABC-transporter-permease-LptG
MKSHILAKYVIRAAFLAMLGAVLGLWLLQLIFAYLNELEGLSDTYMVMDALKFILYRSPYFLVQFIPTGALLGAVVGLGLLAGNSELVSMQASGVSKYRIISWAMIPASVFVVLSLAVNQYVLPITNQKAEAINTRTPETKLVSVNGYWSVNEHDGGQDIVHISYADSDGVLGETKRYTLDQSSNLTGAMRASSGVYDAKSSDDRYSWQLSDIDVVNINASGVSRTHENAKILTLPIAPTDVHLLTREPEDMSLTDLYAHGQLMNHQGSSSARHELKFWQKLLSPFAVLSLVLVASSFVFGSLRSQGLGLRIVLALLIGLLFSYLTDLTGFIALAANWSPFVMALLPIIISALAGVYLLQKRQ
>NZ_CP011377.1|WP_046695845.1|58127_58862_-|two-component-system-response-regulator-OmpR
MTETNENIAHRILVVDDDVRLRTLLQRFLEDDGFVVRVAHDGKQMDKLIAREIFSLIVLDLMLPDEDGISICKRLRTENSDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQNRELPGAPSQQMEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKLMNLARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDGAES
>NZ_CP011377.1|WP_046695846.1|59137_61525_+|RNA-binding-transcriptional-accessory-protein
MTDIVQTPIDHAAIYDKLAKEHGVKPSQVAAFAELFDEGASVPFIARYRKEQTGGLDDALLRALEKGLVLQRDLAARRIKIIELLTAQNALTDELVTRIEAANTKLELEEIYQPYRPRRRSVAARARLAGLEPIAQDILVGAAPSEALAGFSCPETLTDETGETFEADFKDFDKQLAGVQAIILDTWAQSLDLLDEVRLGFNKTASIRSELVGEEKREAGEKFKDYFEHSEPFAKLSNHRLLAMLRGRQQNVLVLHVDGEDEPFVQKIKSHFGVDQSAVNGEFLADTADKLWHAKWRSQIEHRLLTERRVAAETDAIGVFAENLKHLLMTAPAGRKVILGVDPGIRHGVKMAVIDATGDVLATDTAYPFEPYNKVDEARKMIAGLIRSHGVELVAIGNGTASRESESLVKSIIDDEKLSVKALVISEAGASVYSASEIASNELPDLDVSVRGAVSIARRLQDPLSELVKVEPKAIGVGQYQHDVNQTELESSLDKVTEDCVNAVGVDVNTASPAILAHIAGLNKNVAQQIVDYRRTNGAFKNREELKAVPRLGVKTFEQAAGFLRIKDGTEPLDATGVHPESYGLVYEILRKADKTLTDVLGNEAVAKSLNDSADNFSQLATVVAELAKPAHDPRGEFKTAKFRDDVNSIKDLTVGMVLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDGFVDNPAAVVKPQDIVSVRVISVDEARGRIGFSMKSEAAKADKKADKPKEKEDRKPRTSDKKADKTKDQRSERRRSDKSDKPKAQDNKVGSLGALLKQAGLQLIR
>NZ_CP011377.1|WP_046695847.1|61697_62972_-|citrate-(Si)-synthase
MSNVKLVIDGTEYEMPVLESTLGRPVLDVSAVAKAGFWTYDPGFMATAPVESALTYIDGDKGELLHRGYAIDDLADNADYLEVCYALLYGDLPTTEQKEKFYARINDHMAVHDQLRKFFEGFRRDAHPMAIMIGVVGALSAFYHNHLDISDAAHRDDTAVDLIAKVPTLAAMSYKYSIGEPFLYPRKDFSYAENFLYMMFATPGDVDYKPNPVLVKAMDKIFTLHADHEQNASTSTVRLAGSTGANPYACIASGIAALWGPSHGGANEAVLTMLDEIGSIENVAPFMEKVKTKEAKLMGFGHRVYKNFDPRAKVMKETCDEVLGALGVNDPKLQLAMELEKIALSDQYFIDRKLYPNVDFYSGIILKAIGIPTSMFTVIFALARTAGWIAHWTEMHSEAFKIGRPRQRYIGEKHREFVKIEDRK
>NZ_CP011377.1|WP_080702176.1|63898_64288_+|succinate-dehydrogenase,-cytochrome-b556-subunit
MPAVKSNRPINLPLSQVIAVNSKSPIAMASILHRVSGIVLFLLVPVMLCILQTSLSSPEGFASVFDNVLLRFVAWIFVAATAYHFVMGIKHLLADLGMNEEFKSGKTAAVISFVIAAILIVASFVWVMF
>NZ_CP011377.1|WP_046695848.1|64287_64644_+|succinate-dehydrogenase,-hydrophobic-membrane-anchor-protein
MARNNSGVKSATGLTGSGSRDWILQRISAVVLAVYAVVVIGFFLFNQVDYNAWHGFMMSLPMKLFSLVAILSLVFHAWVGMWTVFTDYVKSSGLRIVLQAAVIIAVLVYLFWGVMIFW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011377_1	1.13\|51379\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51379-51405	27	NZ_CP011375	Moraxella bovoculi strain 58069 plasmid unnamed, complete sequence	14285-14311	0	1.0
NZ_CP011377_1	1.7\|50999\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	50999-51025	27	KR093628	Moraxella phage Mcat4, complete genome	37123-37149	1	0.963
NZ_CP011377_1	1.8\|51062\|28\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51062-51089	28	KR093630	Moraxella phage Mcat6, complete genome	48383-48410	1	0.964
NZ_CP011377_1	1.8\|51062\|28\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51062-51089	28	KR093625	Moraxella phage Mcat1, complete genome	35296-35323	1	0.964
NZ_CP011377_1	1.8\|51062\|28\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51062-51089	28	KR093626	Moraxella phage Mcat2, complete genome	35323-35350	1	0.964
NZ_CP011377_1	1.8\|51062\|28\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51062-51089	28	KR093629	Moraxella phage Mcat5, complete genome	45589-45616	1	0.964
NZ_CP011377_1	1.8\|51062\|28\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51062-51089	28	KR093627	Moraxella phage Mcat3, complete genome	25805-25832	1	0.964
NZ_CP011377_1	1.8\|51062\|28\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51062-51089	28	KR093628	Moraxella phage Mcat4, complete genome	36595-36622	1	0.964
NZ_CP011377_1	1.3\|50745\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	50745-50771	27	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1349929-1349955	5	0.815
NZ_CP011377_1	1.10\|51188\|29\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51188-51216	29	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	318619-318647	5	0.828
NZ_CP011377_1	1.12\|51317\|26\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51317-51342	26	KP280062	Vibrio phage phi 1, complete genome	57299-57324	5	0.808
NZ_CP011377_1	1.6\|50936\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	50936-50962	27	NZ_CP020434	Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence	29380-29406	6	0.778
NZ_CP011377_1	1.6\|50936\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	50936-50962	27	MT521992	Rhodococcus phage NiceHouse, complete genome	107776-107802	6	0.778
NZ_CP011377_1	1.13\|51379\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51379-51405	27	NZ_AP014706	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence	301975-302001	6	0.778
NZ_CP011377_1	1.8\|51062\|28\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51062-51089	28	MG869615	Polaromonas sp. E10S plasmid pE10SP1, complete sequence	43427-43454	7	0.75
NZ_CP011377_1	1.8\|51062\|28\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51062-51089	28	MG869617	Polaromonas sp. E3S plasmid pE3SP1, complete sequence	9531-9558	7	0.75
NZ_CP011377_1	1.8\|51062\|28\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51062-51089	28	MG869618	Polaromonas sp. E5S plasmid pE5SP1, complete sequence	7413-7440	7	0.75
NZ_CP011377_1	1.10\|51188\|29\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51188-51216	29	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	149149-149177	7	0.759
NZ_CP011377_1	1.10\|51188\|29\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51188-51216	29	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	323267-323295	7	0.759
NZ_CP011377_1	1.10\|51188\|29\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51188-51216	29	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	84248-84276	7	0.759
NZ_CP011377_1	1.10\|51188\|29\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51188-51216	29	NC_049857	Lactococcus phage P1048, complete genome	60198-60226	7	0.759
NZ_CP011377_1	1.10\|51188\|29\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	51188-51216	29	MK448940	Streptococcus phage Javan444, complete genome	885-913	7	0.759
NZ_CP011377_1	1.6\|50936\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	50936-50962	27	AP022644	Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence	32047-32073	8	0.704
NZ_CP011377_1	1.6\|50936\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	50936-50962	27	NZ_CP034685	Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence	22003-22029	8	0.704
NZ_CP011377_1	1.6\|50936\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	50936-50962	27	NZ_CP013276	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-1-360K, complete sequence	327475-327501	8	0.704
NZ_CP011377_1	1.6\|50936\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	50936-50962	27	NZ_CP010112	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence	228797-228823	8	0.704
NZ_CP011377_1	1.6\|50936\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	50936-50962	27	NZ_CP039722	Bacillus thuringiensis strain BT-59 plasmid p1, complete sequence	105264-105290	8	0.704
NZ_CP011377_1	1.6\|50936\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	50936-50962	27	CP024686	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence	292952-292978	8	0.704
NZ_CP011377_1	1.6\|50936\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	50936-50962	27	NC_018687	Bacillus thuringiensis MC28 plasmid pMC189, complete sequence	173933-173959	8	0.704
NZ_CP011377_1	1.6\|50936\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	50936-50962	27	NZ_CP009349	Bacillus thuringiensis HD1002 plasmid 1, complete sequence	44005-44031	8	0.704
NZ_CP011377_1	1.6\|50936\|27\|NZ_CP011377\|PILER-CR,CRISPRCasFinder,CRT	50936-50962	27	NZ_CP045023	Bacillus thuringiensis strain JW-1 plasmid p1, complete sequence	327476-327502	8	0.704

1. spacer 1.13|51379|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011375 (Moraxella bovoculi strain 58069 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ggaacctgttcgccgcttggatgttac	CRISPR spacer
ggaacctgttcgccgcttggatgttac	Protospacer
***************************

2. spacer 1.7|50999|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to KR093628 (Moraxella phage Mcat4, complete genome) position: , mismatch: 1, identity: 0.963

agaaagcgacagatgggcgagtaacag	CRISPR spacer
agaaagcgacagatgggcaagtaacag	Protospacer
******************.********

3. spacer 1.8|51062|28|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to KR093630 (Moraxella phage Mcat6, complete genome) position: , mismatch: 1, identity: 0.964

cagacggtggtgcgtgatttgtcagcac	CRISPR spacer
cagacggtcgtgcgtgatttgtcagcac	Protospacer
******** *******************

4. spacer 1.8|51062|28|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to KR093625 (Moraxella phage Mcat1, complete genome) position: , mismatch: 1, identity: 0.964

cagacggtggtgcgtgatttgtcagcac	CRISPR spacer
cagacggtcgtgcgtgatttgtcagcac	Protospacer
******** *******************

5. spacer 1.8|51062|28|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to KR093626 (Moraxella phage Mcat2, complete genome) position: , mismatch: 1, identity: 0.964

cagacggtggtgcgtgatttgtcagcac	CRISPR spacer
cagacggtcgtgcgtgatttgtcagcac	Protospacer
******** *******************

6. spacer 1.8|51062|28|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to KR093629 (Moraxella phage Mcat5, complete genome) position: , mismatch: 1, identity: 0.964

cagacggtggtgcgtgatttgtcagcac	CRISPR spacer
cagacggtcgtgcgtgatttgtcagcac	Protospacer
******** *******************

7. spacer 1.8|51062|28|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to KR093627 (Moraxella phage Mcat3, complete genome) position: , mismatch: 1, identity: 0.964

cagacggtggtgcgtgatttgtcagcac	CRISPR spacer
cagacggtcgtgcgtgatttgtcagcac	Protospacer
******** *******************

8. spacer 1.8|51062|28|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to KR093628 (Moraxella phage Mcat4, complete genome) position: , mismatch: 1, identity: 0.964

cagacggtggtgcgtgatttgtcagcac	CRISPR spacer
cagacggtcgtgcgtgatttgtcagcac	Protospacer
******** *******************

9. spacer 1.3|50745|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 5, identity: 0.815

agtgatttccaccccacggcttgccaa	CRISPR spacer
catgatctcaaccccacggcttgccca	Protospacer
 .****.** *************** *

10. spacer 1.10|51188|29|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 5, identity: 0.828

tgggaatattatagcagatttatttaatt	CRISPR spacer
tgctaatataatagaagatttatttaaat	Protospacer
**  ***** **** ************ *

11. spacer 1.12|51317|26|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to KP280062 (Vibrio phage phi 1, complete genome) position: , mismatch: 5, identity: 0.808

ctgtggctttcatgtcacacctctca	CRISPR spacer
ctgtagctttcatatcacacctcatc	Protospacer
****.********.********* .

12. spacer 1.6|50936|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020434 (Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.778

----aatgttttggtaaatgtccattgtgcc	CRISPR spacer
gtacaa----ttggtaaatgtccattgtgta	Protospacer
    **    *******************.

13. spacer 1.6|50936|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to MT521992 (Rhodococcus phage NiceHouse, complete genome) position: , mismatch: 6, identity: 0.778

aatgttttggtaaatgtccattgtgcc	CRISPR spacer
aatctttttgtaaatgtccattgctga	Protospacer
*** **** **************.

14. spacer 1.13|51379|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 6, identity: 0.778

ggaacctgttcgccgcttggatgttac	CRISPR spacer
tcaacctgttcgccgcctggatggtgg	Protospacer
  **************.****** *.

15. spacer 1.8|51062|28|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to MG869615 (Polaromonas sp. E10S plasmid pE10SP1, complete sequence) position: , mismatch: 7, identity: 0.75

cagacggtggtgcgtgatttgtcagcac	CRISPR spacer
cgccgggtgatgcgtgatttgtcagcgg	Protospacer
*.   ****.****************.

16. spacer 1.8|51062|28|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to MG869617 (Polaromonas sp. E3S plasmid pE3SP1, complete sequence) position: , mismatch: 7, identity: 0.75

cagacggtggtgcgtgatttgtcagcac	CRISPR spacer
cgccgggtgatgcgtgatttgtcagcgg	Protospacer
*.   ****.****************.

17. spacer 1.8|51062|28|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to MG869618 (Polaromonas sp. E5S plasmid pE5SP1, complete sequence) position: , mismatch: 7, identity: 0.75

cagacggtggtgcgtgatttgtcagcac	CRISPR spacer
cgccgggtgatgcgtgatttgtcagcgg	Protospacer
*.   ****.****************.

18. spacer 1.10|51188|29|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 7, identity: 0.759

tgggaatattatagcagatttatttaatt	CRISPR spacer
catatatattatagcagatttatttaaga	Protospacer
.. . **********************

19. spacer 1.10|51188|29|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 7, identity: 0.759

tgggaatattatagcagatttatttaatt	CRISPR spacer
catatatattatagcagatttatttaaga	Protospacer
.. . **********************

20. spacer 1.10|51188|29|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 7, identity: 0.759

tgggaatattatagcagatttatttaatt	CRISPR spacer
tatatatattatagcagatttttttaaga	Protospacer
*. . **************** *****

21. spacer 1.10|51188|29|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 7, identity: 0.759

tgggaatattatagcagatttatttaatt	CRISPR spacer
atataatattatagcatatttatttaaaa	Protospacer
  . ************ **********

22. spacer 1.10|51188|29|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to MK448940 (Streptococcus phage Javan444, complete genome) position: , mismatch: 7, identity: 0.759

tgggaatattatagcagatttatttaatt	CRISPR spacer
atcaattattatagcagatatatttgatt	Protospacer
   .* ************* *****.***

23. spacer 1.6|50936|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 8, identity: 0.704

aatgttttggtaaatgtccattgtgcc	CRISPR spacer
gtaccattggtaaatgtccattgtgta	Protospacer
.   . *******************.

24. spacer 1.6|50936|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034685 (Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence) position: , mismatch: 8, identity: 0.704

aatgttttggtaaatgtccattgtgcc	CRISPR spacer
gtaccattggtaaatgtccattgtgta	Protospacer
.   . *******************.

25. spacer 1.6|50936|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013276 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-1-360K, complete sequence) position: , mismatch: 8, identity: 0.704

aatgttttggtaaatgtccattgtgcc	CRISPR spacer
gtaccattggtaaatgtccattgtgta	Protospacer
.   . *******************.

26. spacer 1.6|50936|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 8, identity: 0.704

aatgttttggtaaatgtccattgtgcc	CRISPR spacer
gtaccattggtaaatgtccattgtgta	Protospacer
.   . *******************.

27. spacer 1.6|50936|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039722 (Bacillus thuringiensis strain BT-59 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.704

aatgttttggtaaatgtccattgtgcc	CRISPR spacer
gtaccattggtaaatgtccattgtgta	Protospacer
.   . *******************.

28. spacer 1.6|50936|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 8, identity: 0.704

aatgttttggtaaatgtccattgtgcc	CRISPR spacer
gtaccattggtaaatgtccattgtgta	Protospacer
.   . *******************.

29. spacer 1.6|50936|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NC_018687 (Bacillus thuringiensis MC28 plasmid pMC189, complete sequence) position: , mismatch: 8, identity: 0.704

aatgttttggtaaatgtccattgtgcc	CRISPR spacer
gtaccattggtaaatgtccattgtgta	Protospacer
.   . *******************.

30. spacer 1.6|50936|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009349 (Bacillus thuringiensis HD1002 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.704

aatgttttggtaaatgtccattgtgcc	CRISPR spacer
gtaccattggtaaatgtccattgtgta	Protospacer
.   . *******************.

31. spacer 1.6|50936|27|NZ_CP011377|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045023 (Bacillus thuringiensis strain JW-1 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.704

aatgttttggtaaatgtccattgtgcc	CRISPR spacer
gtaccattggtaaatgtccattgtgta	Protospacer
.   . *******************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

256768 : 303068

Moraxella_phage(66.67%)

tail,integrase,head

attL 249155:249174|attR 278397:278416

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
249155:249174	attL	NA	NA	NA	NA
WP_046695977.1\|256768_257887_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4J339	uncultured_Caudovirales_phage	1.4e-106	53.5
WP_046695978.1\|257921_258113_-	hypothetical protein	NA	NA	NA	NA
WP_046695979.1\|258123_258507_-	hypothetical protein	R9TLR7	Paenibacillus_phage	1.0e-32	59.7
WP_046695980.1\|258628_258901_-	hypothetical protein	NA	NA	NA	NA
WP_046695981.1\|258996_259482_-	nucleoside triphosphate pyrophosphohydrolase family protein	A0A2I7S8G6	Vibrio_phage	2.7e-25	46.7
WP_046695982.1\|259478_259877_-	hypothetical protein	NA	NA	NA	NA
WP_080945894.1\|260034_260574_-	single-stranded DNA-binding protein	M4SRQ0	Psychrobacter_phage	1.3e-36	65.3
WP_046695983.1\|260576_261179_-	YqaJ viral recombinase family protein	A0A2H4J882	uncultured_Caudovirales_phage	2.1e-67	64.1
WP_046695984.1\|261175_261946_-	phage recombination protein Bet	A0A0N7C1T0	Escherichia_phage	1.6e-51	55.5
WP_155400091.1\|261942_262089_-	hypothetical protein	NA	NA	NA	NA
WP_046695985.1\|262085_262325_-	hypothetical protein	NA	NA	NA	NA
WP_155400092.1\|262297_262609_-	hypothetical protein	NA	NA	NA	NA
WP_155400093.1\|263615_263837_-	hypothetical protein	NA	NA	NA	NA
WP_046695988.1\|263972_265034_-	hypothetical protein	A0A0R6PIZ6	Moraxella_phage	2.4e-79	43.9
WP_080947460.1\|265046_265787_-	helix-turn-helix transcriptional regulator	A0A2K8HKD5	Pseudomonas_phage	1.5e-27	32.9
WP_080947461.1\|265911_266127_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046695989.1\|266180_266423_+	hypothetical protein	NA	NA	NA	NA
WP_046695990.1\|266419_267331_+	hypothetical protein	A0A0R6PHP4	Moraxella_phage	5.8e-21	36.2
WP_046695991.1\|267323_267968_+	hypothetical protein	A0A0R6PKK7	Moraxella_phage	1.2e-49	54.0
WP_155400094.1\|267964_268312_+	RusA family crossover junction endodeoxyribonuclease	A0A1X9SFE9	Acinetobacter_phage	7.6e-14	42.4
WP_046695992.1\|268301_268664_+	hypothetical protein	NA	NA	NA	NA
WP_046695993.1\|268660_268897_+	hypothetical protein	NA	NA	NA	NA
WP_155400095.1\|268893_269064_+	hypothetical protein	A0A0R6PHI3	Moraxella_phage	2.2e-11	53.6
WP_046695994.1\|269086_269608_+	hypothetical protein	A0A0P0ZAZ7	Stx2-converting_phage	5.4e-32	64.1
WP_080947463.1\|269597_270065_+	hypothetical protein	A0A0R6PCZ2	Moraxella_phage	4.9e-32	43.6
WP_046695996.1\|270457_271249_+	hypothetical protein	NA	NA	NA	NA
WP_155400096.1\|271405_271909_+	hypothetical protein	NA	NA	NA	NA
WP_046695998.1\|272091_272517_+	hypothetical protein	A0A0R6PH16	Moraxella_phage	2.1e-66	87.2
WP_046695999.1\|272516_273992_+	hypothetical protein	A0A0R6PHB9	Moraxella_phage	3.9e-253	84.3
WP_046696000.1\|273991_275422_+	DUF4055 domain-containing protein	A0A0R6PHK8	Moraxella_phage	1.2e-203	74.4
WP_046696001.1\|275372_276359_+\|head	head morphogenesis protein	A0A0R6PHM5	Moraxella_phage	4.5e-144	78.2
WP_046696002.1\|276407_277073_+	hypothetical protein	A0A0R6PH19	Moraxella_phage	1.3e-46	70.4
WP_046696003.1\|277076_278093_+	hypothetical protein	A0A0R6PCJ9	Moraxella_phage	1.1e-169	87.6
WP_046696004.1\|278103_278307_+	hypothetical protein	A0A0R6PCI4	Moraxella_phage	3.1e-20	73.1
WP_046696005.1\|278361_278709_+	hypothetical protein	A0A0R6PGY9	Moraxella_phage	3.6e-24	53.8
278397:278416	attR	NA	NA	NA	NA
WP_046696006.1\|278710_279085_+	hypothetical protein	A0A0R6PHG4	Moraxella_phage	8.4e-27	51.3
WP_046696007.1\|279065_279494_+	HK97 gp10 family phage protein	A0A0R6PHN4	Moraxella_phage	4.6e-29	48.6
WP_046696008.1\|279496_279886_+	hypothetical protein	A0A0R6PK03	Moraxella_phage	6.7e-35	55.8
WP_046696009.1\|279970_280483_+	hypothetical protein	A0A2H4PAV0	Aphanizomenon_phage	1.3e-06	37.9
WP_046696010.1\|280498_281407_+	hypothetical protein	A0A0R6PJY2	Moraxella_phage	2.0e-146	86.1
WP_046696011.1\|281644_282100_+	hypothetical protein	A0A0R6PKF1	Moraxella_phage	1.8e-15	35.8
WP_080945912.1\|282906_283692_+	hypothetical protein	NA	NA	NA	NA
WP_080945913.1\|283984_284503_+	hypothetical protein	A0A0R6PDR4	Moraxella_phage	3.0e-38	75.2
WP_046696013.1\|284861_285353_+	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_046696014.1\|285339_285696_+	hypothetical protein	NA	NA	NA	NA
WP_080945906.1\|285807_286830_+	RelA/SpoT domain-containing protein	A0A1B0VBT5	Salmonella_phage	2.8e-32	30.4
WP_080947464.1\|286871_290921_+	tape measure protein	A0A220VZA0	Acinetobacter_phage	7.9e-46	31.1
WP_046696017.1\|290922_291177_+	hypothetical protein	A0A0R6PGU4	Moraxella_phage	1.3e-18	53.7
WP_046696018.1\|291230_291563_+	hypothetical protein	A0A0R6PHH7	Moraxella_phage	3.6e-45	79.1
WP_046696019.1\|291639_292014_+	hypothetical protein	A0A0R6PK02	Moraxella_phage	6.9e-37	64.6
WP_046696020.1\|292059_292728_+\|tail	phage minor tail protein L	A0A0R6PJ72	Moraxella_phage	2.4e-96	75.1
WP_046696021.1\|292724_293516_+	C40 family peptidase	A0A0R6PIU2	Moraxella_phage	7.3e-97	62.8
WP_046696022.1\|293512_294106_+\|tail	tail assembly protein	A0A0R6PIF0	Moraxella_phage	2.8e-69	66.7
WP_080947465.1\|294102_300408_+	DUF1983 domain-containing protein	A0A0R6PHL4	Moraxella_phage	3.2e-25	64.9
WP_155400097.1\|300416_300764_+	hypothetical protein	A0A0R6PHL5	Moraxella_phage	8.6e-18	45.7
WP_046696024.1\|300760_301816_+	hypothetical protein	A0A0R6PHT2	Moraxella_phage	2.1e-59	39.0
WP_046696025.1\|302027_302396_+	hypothetical protein	A0A2H4JFC0	uncultured_Caudovirales_phage	1.8e-18	45.5
WP_046696026.1\|302435_303068_+	N-acetylmuramidase family protein	M4SQ91	Psychrobacter_phage	1.9e-26	38.0

DBSCAN-SWA_2

678902 : 730600

Moraxella_phage(55.81%)

integrase,terminase,protease,head,tail,capsid,tRNA

attL 708305:708320|attR 712077:712092

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046696306.1\|678902_679478_-\|tail	tail assembly protein	A0A0R6PIW1	Moraxella_phage	2.4e-73	88.5
WP_046696307.1\|679562_679841_+	hypothetical protein	A0A222YWE2	Escherichia_phage	9.4e-07	37.0
WP_046696308.1\|679856_680162_+	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	2.4e-16	50.0
WP_046696309.1\|680133_680913_-	C40 family peptidase	A0A0R6PIM4	Moraxella_phage	1.2e-128	82.7
WP_046696310.1\|680968_681355_-	hypothetical protein	NA	NA	NA	NA
WP_046696311.1\|681354_682128_-	hypothetical protein	NA	NA	NA	NA
WP_046696312.1\|682188_682902_-\|tail	phage minor tail protein L	A0A0R6PGU8	Moraxella_phage	5.0e-121	88.6
WP_046696313.1\|682953_683352_-	hypothetical protein	A0A0R6PK02	Moraxella_phage	5.1e-38	59.1
WP_046696314.1\|683429_683759_-\|tail	phage tail protein	A0A0R6PHZ9	Moraxella_phage	1.3e-52	82.6
WP_046696315.1\|683803_684061_-	hypothetical protein	NA	NA	NA	NA
WP_080947477.1\|684164_686744_-	hypothetical protein	D4FUM0	Pseudomonas_phage	5.4e-40	41.2
WP_046696316.1\|686798_687119_-	hypothetical protein	NA	NA	NA	NA
WP_046696317.1\|687506_687710_+	hypothetical protein	A0A0R6PK05	Moraxella_phage	2.3e-10	50.0
WP_080947478.1\|687742_688345_-	hypothetical protein	NA	NA	NA	NA
WP_046696319.1\|688763_689111_-	hypothetical protein	NA	NA	NA	NA
WP_046696320.1\|689120_689567_-	hypothetical protein	NA	NA	NA	NA
WP_046696321.1\|689588_689954_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_080947480.1\|689946_690408_-	hypothetical protein	A0A0R6PHU8	Moraxella_phage	1.2e-30	55.0
WP_046696322.1\|690444_690765_-\|head	phage head closure protein	G3ENA2	Psychrobacter_phage	2.2e-20	43.9
WP_046696323.1\|690773_691061_-\|head,tail	phage gp6-like head-tail connector protein	A0A0R6PHI1	Moraxella_phage	1.7e-40	84.2
WP_046696324.1\|691828_692200_-	hypothetical protein	NA	NA	NA	NA
WP_046696325.1\|692296_693634_-\|capsid	phage major capsid protein	A0A0R6PHR0	Moraxella_phage	2.6e-139	60.0
WP_080947481.1\|693630_694245_-	peptidase U35	A0A0R6PGX0	Moraxella_phage	6.1e-83	80.0
WP_046696326.1\|694312_694531_-	hypothetical protein	NA	NA	NA	NA
WP_046696327.1\|694527_694944_-	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_046696328.1\|694988_696731_-\|terminase	terminase large subunit	A0A0R6PH79	Moraxella_phage	2.4e-297	87.2
WP_046696329.1\|696705_697065_-	DUF3310 domain-containing protein	A0A0R6PC49	Moraxella_phage	3.4e-41	69.6
WP_046696330.1\|697048_697228_-	hypothetical protein	NA	NA	NA	NA
WP_046696331.1\|697224_697668_-	hypothetical protein	A0A0R6PGM4	Moraxella_phage	2.4e-36	53.0
WP_046696332.1\|697784_698090_-	HNH endonuclease	A0A0R6PH58	Moraxella_phage	9.8e-42	80.8
WP_155399987.1\|698092_698245_-	hypothetical protein	A0A0R6PKL5	Moraxella_phage	1.4e-09	60.0
WP_046696333.1\|698448_698871_-	hypothetical protein	A0A0R6PGQ4	Moraxella_phage	1.4e-49	69.3
WP_046696334.1\|699213_701841_-	hypothetical protein	A0A0R6PCH4	Moraxella_phage	0.0e+00	76.9
WP_046696335.1\|701837_702527_-	hypothetical protein	A0A0R6PGY3	Moraxella_phage	2.1e-31	71.4
WP_046696336.1\|702605_702842_-	hypothetical protein	A0A0R6PHP1	Moraxella_phage	2.6e-10	48.0
WP_046696337.1\|702989_703763_+	helix-turn-helix transcriptional regulator	A0A0R6PKV4	Moraxella_phage	7.0e-52	40.8
WP_046696338.1\|703801_704392_+	hypothetical protein	NA	NA	NA	NA
WP_046696339.1\|704429_705329_+	DUF4393 domain-containing protein	A0A0R6PGX6	Moraxella_phage	6.3e-121	71.9
WP_046696340.1\|705314_705512_-	hypothetical protein	A0A0R6PCH1	Moraxella_phage	9.9e-11	55.6
WP_046697452.1\|705865_706204_+	hypothetical protein	A0A0R6PH37	Moraxella_phage	2.1e-24	86.4
WP_046696341.1\|706194_706485_+	hypothetical protein	A0A0R6PGT5	Moraxella_phage	4.8e-22	57.1
WP_046696342.1\|706484_706709_+	hypothetical protein	NA	NA	NA	NA
WP_046696343.1\|706732_707071_+	hypothetical protein	NA	NA	NA	NA
WP_080947482.1\|707082_707913_+	DUF2303 family protein	NA	NA	NA	NA
WP_155399988.1\|707968_708142_+	hypothetical protein	NA	NA	NA	NA
WP_046696344.1\|708164_708476_+	hypothetical protein	NA	NA	NA	NA
708305:708320	attL	NA	NA	NA	NA
WP_046696345.1\|708477_708699_+	hypothetical protein	NA	NA	NA	NA
WP_046696346.1\|708710_708989_+	pyocin activator protein PrtN	NA	NA	NA	NA
WP_046696347.1\|708957_710070_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4J8L8	uncultured_Caudovirales_phage	1.3e-70	40.2
WP_046696348.1\|710209_711196_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_046696349.1\|711318_711897_+	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_080946050.1\|711961_712672_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
712077:712092	attR	NA	NA	NA	NA
WP_046696350.1\|712881_714243_+	phosphoglucosamine mutase	A0A127AWJ1	Bacillus_phage	5.8e-17	23.7
WP_046696351.1\|714499_715000_-	phage virion morphogenesis protein	A0A0A1IUZ3	Pseudomonas_phage	1.5e-10	29.7
WP_080946049.1\|715117_716341_-	hypothetical protein	Q6QIB9	Burkholderia_phage	7.0e-46	47.8
WP_080947483.1\|716337_717600_-	DUF935 family protein	Q6QIC0	Burkholderia_phage	2.3e-76	40.1
WP_155400102.1\|717562_718321_+	hypothetical protein	J9STP5	Pseudomonas_phage	4.2e-33	34.7
WP_046696352.1\|718330_719470_+	AAA family ATPase	A4JWN1	Burkholderia_virus	1.6e-89	55.1
WP_046696353.1\|719496_719724_+	hypothetical protein	NA	NA	NA	NA
WP_046696354.1\|719733_719979_+	hypothetical protein	NA	NA	NA	NA
WP_046696355.1\|720543_720819_+	HU family DNA-binding protein	A3E2K9	Sodalis_phage	4.4e-17	53.3
WP_046696356.1\|720885_721359_+	regulatory protein GemA	NA	NA	NA	NA
WP_080946046.1\|721379_721721_+	hypothetical protein	Q6QIE8	Burkholderia_phage	4.4e-14	42.5
WP_046697459.1\|721970_723056_+	hypothetical protein	A4JWJ9	Burkholderia_virus	2.5e-47	36.4
WP_155399989.1\|723907_724291_+	DUF2190 family protein	NA	NA	NA	NA
WP_046696358.1\|724301_724601_+	hypothetical protein	NA	NA	NA	NA
WP_046696359.1\|724604_725072_+	DUF1320 domain-containing protein	B7SDP4	Haemophilus_phage	7.1e-07	30.0
WP_046696360.1\|725071_725578_+	hypothetical protein	A4JWK3	Burkholderia_virus	6.9e-24	36.6
WP_046696361.1\|725590_726979_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	1.3e-96	43.5
WP_046696362.1\|727001_727514_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	7.9e-44	50.9
WP_046696363.1\|727629_727932_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_080946178.1\|727969_728113_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_155399990.1\|728109_728250_-	hypothetical protein	NA	NA	NA	NA
WP_080946043.1\|728293_730600_+\|tail	phage tail tape measure protein	A0A1W6JT50	Escherichia_phage	2.1e-107	44.5

DBSCAN-SWA_3

768541 : 775296

Lake_Baikal_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046696390.1\|768541_769585_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.9e-77	44.8
WP_155399994.1\|769654_770302_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.8e-24	35.6
WP_046696392.1\|770346_770685_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_046696393.1\|770722_772591_-	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	5.4e-98	39.0
WP_046696394.1\|772704_773226_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_046696395.1\|773235_773556_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	2.8e-23	50.0
WP_036366269.1\|773581_773965_-	Fe-S cluster assembly scaffold IscU	A0A2H4N7M4	Lake_Baikal_phage	1.3e-51	80.6
WP_046696396.1\|774072_775296_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	2.2e-31	29.1

DBSCAN-SWA_4

826049 : 834547

Moraxella_phage(62.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046696435.1\|826049_827222_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A7P9	Microcystis_virus	3.8e-57	36.5
WP_080946037.1\|827522_828062_-	peptidase M15	A0A0R6PID9	Moraxella_phage	1.0e-57	59.9
WP_046696436.1\|828101_828470_-	hypothetical protein	A0A2H4JFC0	uncultured_Caudovirales_phage	1.4e-18	45.5
WP_046696437.1\|828681_829779_-	hypothetical protein	A0A0R6PHT2	Moraxella_phage	4.3e-47	34.7
WP_046696438.1\|829775_830138_-	hypothetical protein	A0A0R6PHL5	Moraxella_phage	9.9e-25	45.8
WP_046696305.1\|830134_832609_-	DUF1983 domain-containing protein	A0A0R6PD22	Moraxella_phage	2.2e-62	78.3
WP_046696439.1\|832710_833169_-	hypothetical protein	A0A0R6PHL4	Moraxella_phage	1.8e-15	63.9
WP_003659281.1\|833234_833390_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_036362158.1\|833432_833669_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_046696440.1\|833941_834283_-	HopJ type III effector protein	NA	NA	NA	NA
WP_046696441.1\|834298_834547_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	7.8e-13	70.6

DBSCAN-SWA_5

1207725 : 1216911

Acinetobacter_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046696695.1\|1207725_1208217_+	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	3.1e-13	35.2
WP_080945990.1\|1208648_1210163_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_046696696.1\|1210338_1210962_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.4e-79	69.5
WP_046696697.1\|1210994_1212077_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.7e-92	53.2
WP_046696698.1\|1212106_1212943_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.1e-56	49.6
WP_046696699.1\|1213011_1213641_-	MarC family protein	NA	NA	NA	NA
WP_046696700.1\|1213791_1214487_+	7-cyano-7-deazaguanine synthase QueC	M1PKZ7	Cellulophaga_phage	8.9e-30	35.8
WP_046696701.1\|1214596_1214938_+	quaternary ammonium transporter	NA	NA	NA	NA
WP_046696702.1\|1214955_1215561_+	TetR/AcrR family transcriptional regulator	A0A0R6PIB6	Moraxella_phage	9.1e-39	52.5
WP_046696703.1\|1215597_1216911_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.7e-191	85.1

Anti-CRISPR protein detection

Acr_ID: NZ_CP011377.1|WP_046697119.1|1834182_1835142_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP011377.1|WP_046697119.1|1834182_1835142_+|hypothetical-protein

1834182_1835142_+

319 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|34	1.0	1	1.0

HTH_XRE

Identity	Hit_domain_coverage
NA	NA

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011377

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information