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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP011049 Cronobacter sakazakii strain ATCC 29544 plasmid CSK29544_2p, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP011048 Cronobacter sakazakii strain ATCC 29544 plasmid CSK29544_1p, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP011047 Cronobacter sakazakii strain ATCC 29544 chromosome, complete genome 21 crisprs csa3,cas3,DEDDh,WYL,DinG 0 17 8 0
NZ_CP011050 Cronobacter sakazakii strain ATCC 29544 plasmid CSK29544_3p, complete sequence 0 crisprs csa3 0 0 0 0

Results visualization

1. NZ_CP011047
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_1 69438-69559 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_2 129533-129800 Orphan I-F
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_3 414617-414708 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_4 423522-423760 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_5 866285-866357 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_6 1191771-1191892 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_7 1258867-1259029 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_8 1312912-1312993 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_9 1776233-1776336 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_10 2119704-2119837 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_11 2221660-2221755 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_12 2538768-2538845 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_13 2695189-2695274 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_14 3198904-3198995 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_15 3758004-3758083 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_16 3871202-3871288 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_17 3892993-3893083 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_18 3981546-3981622 Orphan NA
1 spacers
DinG

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_19 3998408-3998495 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_20 4191432-4191535 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP011047_21 4280925-4281439 Unclear I-E
8 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP011047_21 21.1|4280952|32|NZ_CP011047|CRT 4280952-4280983 32 HQ201308 Cronobacter phage ENT47670, complete genome 27289-27320 0 1.0
NZ_CP011047_11 11.1|2221686|44|NZ_CP011047|CRISPRCasFinder 2221686-2221729 44 JQ182729 Enterobacterial phage mEp390, complete genome 36587-36630 2 0.955
NZ_CP011047_21 21.11|4281135|32|NZ_CP011047|CRISPRCasFinder 4281135-4281166 32 HQ201308 Cronobacter phage ENT47670, complete genome 45871-45902 2 0.938
NZ_CP011047_21 21.4|4281133|34|NZ_CP011047|CRT,PILER-CR 4281133-4281166 34 HQ201308 Cronobacter phage ENT47670, complete genome 45871-45904 4 0.882
NZ_CP011047_5 5.1|866308|27|NZ_CP011047|CRISPRCasFinder 866308-866334 27 MK764442 Flavobacterium phage FPSV-S1, complete genome 11025-11051 5 0.815
NZ_CP011047_5 5.1|866308|27|NZ_CP011047|CRISPRCasFinder 866308-866334 27 MK764448 Flavobacterium phage FPSV-S27, complete genome 14168-14194 5 0.815
NZ_CP011047_20 20.1|4191470|28|NZ_CP011047|CRISPRCasFinder 4191470-4191497 28 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 54118-54145 5 0.821
NZ_CP011047_5 5.1|866308|27|NZ_CP011047|CRISPRCasFinder 866308-866334 27 EU350361 Abalone shriveling syndrome-associated virus, complete genome 25094-25120 6 0.778
NZ_CP011047_18 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder 3981569-3981599 31 NZ_CP029834 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence 43522-43552 6 0.806
NZ_CP011047_18 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder 3981569-3981599 31 NZ_CP015090 Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence 66811-66841 6 0.806
NZ_CP011047_2 2.1|129561|32|NZ_CP011047|CRISPRCasFinder,CRT 129561-129592 32 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 838068-838099 7 0.781
NZ_CP011047_19 19.1|3998436|32|NZ_CP011047|CRISPRCasFinder 3998436-3998467 32 MN642089 Klebsiella phage N1M2, complete genome 105132-105163 7 0.781
NZ_CP011047_21 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder 4281074-4281105 32 NZ_CP028350 Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence 222893-222924 7 0.781
NZ_CP011047_21 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder 4281074-4281105 32 NZ_CP038854 Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence 182256-182287 7 0.781
NZ_CP011047_18 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder 3981569-3981599 31 NZ_CP012399 Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence 235493-235523 8 0.742
NZ_CP011047_18 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder 3981569-3981599 31 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 1650209-1650239 8 0.742
NZ_CP011047_21 21.9|4281013|32|NZ_CP011047|CRISPRCasFinder 4281013-4281044 32 NZ_CP010871 Confluentimicrobium sp. EMB200-NS6 strain EMBL200_NS6 plasmid pNS6002, complete sequence 124467-124498 8 0.75
NZ_CP011047_21 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder 4281074-4281105 32 NZ_CP015091 Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence 90729-90760 8 0.75
NZ_CP011047_21 21.11|4281135|32|NZ_CP011047|CRISPRCasFinder 4281135-4281166 32 NZ_CP017425 Arthrobacter sp. ZXY-2 plasmid pZXY24, complete sequence 6476-6507 8 0.75
NZ_CP011047_18 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder 3981569-3981599 31 NZ_CP035092 Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence 22212-22242 9 0.71
NZ_CP011047_18 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder 3981569-3981599 31 NC_008688 Paracoccus denitrificans PD1222 plasmid 1, complete sequence 269559-269589 9 0.71
NZ_CP011047_21 21.3|4281072|34|NZ_CP011047|CRT,PILER-CR 4281072-4281105 34 NZ_CP015091 Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence 90729-90762 9 0.735
NZ_CP011047_21 21.3|4281072|34|NZ_CP011047|CRT,PILER-CR 4281072-4281105 34 NZ_CP028350 Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence 222893-222926 9 0.735
NZ_CP011047_21 21.3|4281072|34|NZ_CP011047|CRT,PILER-CR 4281072-4281105 34 NZ_CP038854 Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence 182256-182289 9 0.735
NZ_CP011047_21 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder 4281074-4281105 32 NZ_CP015269 Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 2, complete sequence 79921-79952 9 0.719
NZ_CP011047_21 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder 4281074-4281105 32 NZ_CP013556 Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence 696485-696516 9 0.719
NZ_CP011047_21 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder 4281074-4281105 32 NZ_CP013589 Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence 685232-685263 9 0.719
NZ_CP011047_21 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder 4281074-4281105 32 NZ_CP013536 Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence 219144-219175 9 0.719
NZ_CP011047_21 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder 4281074-4281105 32 NZ_CP013567 Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence 696485-696516 9 0.719
NZ_CP011047_21 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder 4281074-4281105 32 NZ_CP021127 Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence 423529-423560 9 0.719
NZ_CP011047_21 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder 4281074-4281105 32 NC_047861 Bordetella phage vB_BbrM_PHB04, complete genome 65145-65176 9 0.719
NZ_CP011047_21 21.12|4281196|32|NZ_CP011047|CRISPRCasFinder 4281196-4281227 32 MK113949 Phage 5P_1, complete genome 40070-40101 9 0.719
NZ_CP011047_2 2.4|129741|32|NZ_CP011047|CRISPRCasFinder,CRT,PILER-CR 129741-129772 32 NZ_CP017589 Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ08, complete sequence 31448-31479 10 0.688
NZ_CP011047_18 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder 3981569-3981599 31 NZ_CP029232 Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence 1078425-1078455 10 0.677
NZ_CP011047_18 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder 3981569-3981599 31 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 1029887-1029917 10 0.677
NZ_CP011047_18 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder 3981569-3981599 31 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 989408-989438 10 0.677
NZ_CP011047_21 21.5|4281194|34|NZ_CP011047|CRT,PILER-CR 4281194-4281227 34 MK113949 Phage 5P_1, complete genome 40068-40101 10 0.706
NZ_CP011047_21 21.13|4281257|32|NZ_CP011047|CRISPRCasFinder 4281257-4281288 32 NC_018878 Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence 257415-257446 10 0.688
NZ_CP011047_12 12.1|2538791|32|NZ_CP011047|CRISPRCasFinder 2538791-2538822 32 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 2121472-2121503 11 0.656

1. spacer 21.1|4280952|32|NZ_CP011047|CRT matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 0, identity: 1.0

agattttgcagcgtgttcgccaggtcagcgtt	CRISPR spacer
agattttgcagcgtgttcgccaggtcagcgtt	Protospacer
********************************

2. spacer 11.1|2221686|44|NZ_CP011047|CRISPRCasFinder matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 2, identity: 0.955

actggcatccgctggtggcttttttatgcgcatcgcacacgcac	CRISPR spacer
actggcatccgctggtggtttttttatgcgcatcgcacgcgcac	Protospacer
******************.*******************.*****

3. spacer 21.11|4281135|32|NZ_CP011047|CRISPRCasFinder matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 2, identity: 0.938

ccacccgctgataccgggccgccgtttttgcg	CRISPR spacer
ccacccgctgagaccggtccgccgtttttgcg	Protospacer
*********** ***** **************

4. spacer 21.4|4281133|34|NZ_CP011047|CRT,PILER-CR matches to HQ201308 (Cronobacter phage ENT47670, complete genome) position: , mismatch: 4, identity: 0.882

ggccacccgctgataccgggccgccgtttttgcg	CRISPR spacer
tcccacccgctgagaccggtccgccgtttttgcg	Protospacer
  *********** ***** **************

5. spacer 5.1|866308|27|NZ_CP011047|CRISPRCasFinder matches to MK764442 (Flavobacterium phage FPSV-S1, complete genome) position: , mismatch: 5, identity: 0.815

gcccgccagttcccaaattaaatctct	CRISPR spacer
gcccgccagctcctaaattaaatttta	Protospacer
*********.***.*********.*. 

6. spacer 5.1|866308|27|NZ_CP011047|CRISPRCasFinder matches to MK764448 (Flavobacterium phage FPSV-S27, complete genome) position: , mismatch: 5, identity: 0.815

gcccgccagttcccaaattaaatctct	CRISPR spacer
gcccgccagctcctaaattaaatttta	Protospacer
*********.***.*********.*. 

7. spacer 20.1|4191470|28|NZ_CP011047|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 5, identity: 0.821

tttttacggagtgtgatgggtgtttgaa	CRISPR spacer
attttacggagtgtgaagggtgcatgca	Protospacer
 *************** *****. ** *

8. spacer 5.1|866308|27|NZ_CP011047|CRISPRCasFinder matches to EU350361 (Abalone shriveling syndrome-associated virus, complete genome) position: , mismatch: 6, identity: 0.778

gcccgccagttcccaaattaaatctct	CRISPR spacer
cccgatcagttcccaaattaaatctag	Protospacer
 ** ..*******************  

9. spacer 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.806

cagcgcacccgccgtcgcgcagcacgtgacc	CRISPR spacer
cgccgcacccgccctcccgcagcacgtttcc	Protospacer
*. ********** ** **********  **

10. spacer 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder matches to NZ_CP015090 (Pelagibaca abyssi strain JLT2014 plasmid pPABY2, complete sequence) position: , mismatch: 6, identity: 0.806

cagcgcacccgccgtcgcgcagcac-gtgacc	CRISPR spacer
cgacgaactcgccgtcgcgcagcacggtgat-	Protospacer
*..** **.**************** ****. 

11. spacer 2.1|129561|32|NZ_CP011047|CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

gagcccggcgctgcaatgatctacatcactcg	CRISPR spacer
gatgccggcgcggcattgatctacatcaaatg	Protospacer
**  ******* *** ************  .*

12. spacer 19.1|3998436|32|NZ_CP011047|CRISPRCasFinder matches to MN642089 (Klebsiella phage N1M2, complete genome) position: , mismatch: 7, identity: 0.781

ggacgttgatggaatgtagggtgggtaagcga	CRISPR spacer
ggtagttgttggaatgttgggtgggtattcgt	Protospacer
**  **** ******** *********  ** 

13. spacer 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 7, identity: 0.781

ccgctgggcgcagcgggcggcaaaactgattt	CRISPR spacer
ctggcgggcgccacgggcggcaaaactgaatc	Protospacer
*.* .****** .**************** *.

14. spacer 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ccgctgggcgcagcgggcggcaaaactgattt	CRISPR spacer
ctggcgggcgccacgggcggcaaaactgaatc	Protospacer
*.* .****** .**************** *.

15. spacer 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 8, identity: 0.742

cagcgcacccgccgtcgcgcagcacgtgacc	CRISPR spacer
gagcgcacccgccgtggcgcaggacacggtg	Protospacer
 ************** ****** **..*.. 

16. spacer 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.742

cagcgcacccgccgtcgcgcagcacgtgacc	CRISPR spacer
ccggttcgccgccgtcgcgcagcgcgtggcc	Protospacer
* *  .  ***************.****.**

17. spacer 21.9|4281013|32|NZ_CP011047|CRISPRCasFinder matches to NZ_CP010871 (Confluentimicrobium sp. EMB200-NS6 strain EMBL200_NS6 plasmid pNS6002, complete sequence) position: , mismatch: 8, identity: 0.75

gcgcggcgtcgctgcgtcaataatcccgccga	CRISPR spacer
caccggcgccgctccgtcaataatccggtcca	Protospacer
   *****.**** ************ *.* *

18. spacer 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder matches to NZ_CP015091 (Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgctgggcgcagcgggcggcaaaactgattt	CRISPR spacer
ccgctcggtgcagcgggcggcaatgcggacga	Protospacer
***** **.************** .* **.  

19. spacer 21.11|4281135|32|NZ_CP011047|CRISPRCasFinder matches to NZ_CP017425 (Arthrobacter sp. ZXY-2 plasmid pZXY24, complete sequence) position: , mismatch: 8, identity: 0.75

ccacccgctgataccgggccgccgtttttgcg---	CRISPR spacer
ccacccgcggatcccgggccgcc---tcggcagat	Protospacer
******** *** **********   *. **.   

20. spacer 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

cagcgcacccgccgtcgcgcagcacgtgacc	CRISPR spacer
cgccgcccccgccgtcgcgcaggacgccgag	Protospacer
*. *** *************** ***. .  

21. spacer 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.71

cagcgcacccgccgtcgcgcagcacgtgacc	CRISPR spacer
cgccgcccccgccgtcgcgcaggacgccgag	Protospacer
*. *** *************** ***. .  

22. spacer 21.3|4281072|34|NZ_CP011047|CRT,PILER-CR matches to NZ_CP015091 (Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence) position: , mismatch: 9, identity: 0.735

agccgctgggcgcagcgggcggcaaaactgattt	CRISPR spacer
cgccgctcggtgcagcgggcggcaatgcggacga	Protospacer
 ****** **.************** .* **.  

23. spacer 21.3|4281072|34|NZ_CP011047|CRT,PILER-CR matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 9, identity: 0.735

agccgctgggcgcagcgggcggcaaaactgattt	CRISPR spacer
tcctggcgggcgccacgggcggcaaaactgaatc	Protospacer
  *.* .****** .**************** *.

24. spacer 21.3|4281072|34|NZ_CP011047|CRT,PILER-CR matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

agccgctgggcgcagcgggcggcaaaactgattt	CRISPR spacer
tcctggcgggcgccacgggcggcaaaactgaatc	Protospacer
  *.* .****** .**************** *.

25. spacer 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder matches to NZ_CP015269 (Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 2, complete sequence) position: , mismatch: 9, identity: 0.719

-----ccgctgggcgcagcgggcggcaaaactgattt	CRISPR spacer
aaaaacc-----ttgcagcgggcggcaatactgaatt	Protospacer
     **      .************** ***** **

26. spacer 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 9, identity: 0.719

ccgctgggcgcagcgggcggcaaaactgattt	CRISPR spacer
cgccgaggcggagcgggcggaaaaactgagga	Protospacer
*  * .**** ********* ********   

27. spacer 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 9, identity: 0.719

ccgctgggcgcagcgggcggcaaaactgattt	CRISPR spacer
cgccgaggcggagcgggcggaaaaactgagga	Protospacer
*  * .**** ********* ********   

28. spacer 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 9, identity: 0.719

ccgctgggcgcagcgggcggcaaaactgattt	CRISPR spacer
cgccgaggcggagcgggcggaaaaactgagga	Protospacer
*  * .**** ********* ********   

29. spacer 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 9, identity: 0.719

ccgctgggcgcagcgggcggcaaaactgattt	CRISPR spacer
cgccgaggcggagcgggcggaaaaactgagga	Protospacer
*  * .**** ********* ********   

30. spacer 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 9, identity: 0.719

ccgctgggcgcagcgggcggcaaaactgattt	CRISPR spacer
cgccgaggcggagcgggcggaaaaactgagga	Protospacer
*  * .**** ********* ********   

31. spacer 21.10|4281074|32|NZ_CP011047|CRISPRCasFinder matches to NC_047861 (Bordetella phage vB_BbrM_PHB04, complete genome) position: , mismatch: 9, identity: 0.719

ccgctgggcgcagcgggcggcaaaactgattt	CRISPR spacer
attccgggcgcagcgagcggccaaactgctgg	Protospacer
 . *.**********.***** ****** *  

32. spacer 21.12|4281196|32|NZ_CP011047|CRISPRCasFinder matches to MK113949 (Phage 5P_1, complete genome) position: , mismatch: 9, identity: 0.719

cggggtgccagtcgataaatttacgttccata	CRISPR spacer
atgcgtgccagtccttaaatttacgttcatgg	Protospacer
  * *********  *************   .

33. spacer 2.4|129741|32|NZ_CP011047|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017589 (Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ08, complete sequence) position: , mismatch: 10, identity: 0.688

gccgcgatactcaatcagctcgttttctggtc	CRISPR spacer
atacaggcgctcaatcagctccttctctggtc	Protospacer
..   *...************ **.*******

34. spacer 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 10, identity: 0.677

cagcgcacccgccgtcgcgcagcacgtgacc	CRISPR spacer
ggacgcgctcgccgtcgcgcagcacgacgat	Protospacer
 ..***.*.*****************  . .

35. spacer 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 10, identity: 0.677

cagcgcacccgccgtcgcgcagcacgtgacc	CRISPR spacer
ggacgcgctcgccgtcgcgcagcacgacgat	Protospacer
 ..***.*.*****************  . .

36. spacer 18.1|3981569|31|NZ_CP011047|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 10, identity: 0.677

cagcgcacccgccgtcgcgcagcacgtgacc	CRISPR spacer
ggacgcgctcgccgtcgcgcagcacgacgat	Protospacer
 ..***.*.*****************  . .

37. spacer 21.5|4281194|34|NZ_CP011047|CRT,PILER-CR matches to MK113949 (Phage 5P_1, complete genome) position: , mismatch: 10, identity: 0.706

ggcggggtgccagtcgataaatttacgttccata	CRISPR spacer
cgatgcgtgccagtccttaaatttacgttcatgg	Protospacer
 *  * *********  *************   .

38. spacer 21.13|4281257|32|NZ_CP011047|CRISPRCasFinder matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 10, identity: 0.688

taaactaactatcgagggaatgaaaatggata	CRISPR spacer
attcataactatcaagggaatgaagatgaacc	Protospacer
     ********.**********.***.*. 

39. spacer 12.1|2538791|32|NZ_CP011047|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 11, identity: 0.656

agtcacgtgcggtgtgatggcgggtgcgctta	CRISPR spacer
ccaggtgtgcggcgtgatggcgggtgggcgcg	Protospacer
    ..******.************* ** ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1171 : 26682 42 Cronobacter_phage(45.71%) protease,integrase attL 18773:18787|attR 33556:33570
DBSCAN-SWA_2 445158 : 453278 11 uncultured_Caudovirales_phage(62.5%) NA NA
DBSCAN-SWA_3 2198151 : 2292697 109 Cronobacter_phage(26.67%) capsid,portal,protease,transposase,terminase,lysis,integrase,head,tail,tRNA attL 2233801:2233816|attR 2273946:2273961
DBSCAN-SWA_4 2359372 : 2409021 76 Cronobacter_phage(71.43%) terminase,lysis,protease,integrase attL 2359247:2359263|attR 2409294:2409310
DBSCAN-SWA_5 3092998 : 3137918 52 Salmonella_phage(37.78%) transposase,terminase,lysis,integrase,holin,tail attL 3087356:3087372|attR 3144355:3144371
DBSCAN-SWA_6 3530454 : 3540652 12 Bacillus_phage(14.29%) tRNA NA
DBSCAN-SWA_7 3590419 : 3661307 90 Salmonella_phage(23.53%) capsid,portal,protease,terminase,lysis,integrase,holin,head,tail,tRNA attL 3639699:3639714|attR 3656929:3656944
DBSCAN-SWA_8 4453073 : 4510255 62 Cronobacter_phage(54.55%) protease,transposase,tail,integrase attL 4446227:4446242|attR 4474928:4474943
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage