CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009933	Clostridium scatologenes strain ATCC 25775 chromosome, complete genome	7 crisprs	csa3,DEDDh,cmr1gr7,cmr4gr7,cmr6gr7,cas10,cmr3gr5,csx1,cmr5gr11,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,WYL,DinG,RT,c2c9_V-U4,TnsE_C	0	13	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009933_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009933_1

753473-754340

TypeIII

III-B

Consensus_repeat	Method
GTTGAACTTTAACATATAATGTATTTAAAT	PILER-CR
GTTGAACTTTAACATATAATGTATTTAAAT	CRISPRCasFinder
GTTGAACTTTAACATATAATGTATTTAAAT	CRT

13 spacers

cmr5gr11,cmr4gr7,csx1,cmr3gr5,cas10,cmr6gr7,cmr1gr7,cas6

The CRISPR arrays of NZ_CP009933_1

>merge|NZ_CP009933|1|753473-754340|PILER-CR,CRISPRCasFinder,CRT
GTTGAACTTTAACATATAATGTATTTAAATCGGGTATAGCTAACCTTATTTTTGGGTTGATATTAGGTTGAACTTTAACATATAATGTATTTAAATTTTTTAAACTCCAAAATTTATATCATCTAAAGCTTTGTTGAACTTTAACATATAATGTATTTAAATTTATTGGCTATGACTTGTAAATTGTTTGAAGGGTTGGTTGAACTTTAACATATAATGTATTTAAATTAGCCAATAATGATATGACAGTTACTATTAAAGCAGGTTGAACTTTAACATATAATGTATTTAAATAGAGCTGGACAGACTTAGTCCCTGGAATCGTTAGCAAGTTGAACTTTAACATATAATGTATTTAAATGATAACTGTGCATATATTTGAGTAGTTGCTGGTGTGTTGAACTTTAACATATAATGTATTTAAATAATAATGATACACAATGCAAGTGGTTGTTTTGGTGGGTTGAACTTTAACATATAATGTATTTAAATACCATGTTGGTGGTCTTATCTTATTACTCTGCAACTGTTGAACTTTAACATATAATGTATTTAAATTATCGAAGTAACTGACTAAGTGGTACACAATACAAGTTGAACTTTAACATATAATGTATTTAAATCTTTTTCGTATATCAAAACCTGAAGGTATATAATCGTTGAACTTTAACATATAATGTATTTAAATAGAAATTCTTTTACTCGTATATATAATTCCAATGAAGTTGAACTTTAACATATAATGTATTTAAATCACATACAGTATAGCTCTTTTATTCGTATTGTTAGTTGAACTTTAACATAGGATGTATTTATGAATTAAGATTTTCTTCAAATATTTGAAATTTAACTTAACAAAAATTTATTA

>NZ_CP009933|1|1|753473-754226|PILER-CR
GTTGAACTTTAACATATAATGTATTTAAAT	CGGGTATAGCTAACCTTATTTTTGGGTTGATATTAG
GTTGAACTTTAACATATAATGTATTTAAAT	TTTTTAAACTCCAAAATTTATATCATCTAAAGCTTT
GTTGAACTTTAACATATAATGTATTTAAAT	TTATTGGCTATGACTTGTAAATTGTTTGAAGGGTTG
GTTGAACTTTAACATATAATGTATTTAAAT	TAGCCAATAATGATATGACAGTTACTATTAAAGCAG
GTTGAACTTTAACATATAATGTATTTAAAT	AGAGCTGGACAGACTTAGTCCCTGGAATCGTTAGCAA
GTTGAACTTTAACATATAATGTATTTAAAT	GATAACTGTGCATATATTTGAGTAGTTGCTGGTGT
GTTGAACTTTAACATATAATGTATTTAAAT	AATAATGATACACAATGCAAGTGGTTGTTTTGGTGG
GTTGAACTTTAACATATAATGTATTTAAAT	ACCATGTTGGTGGTCTTATCTTATTACTCTGCAACT
GTTGAACTTTAACATATAATGTATTTAAAT	TATCGAAGTAACTGACTAAGTGGTACACAATACAA
GTTGAACTTTAACATATAATGTATTTAAAT	CTTTTTCGTATATCAAAACCTGAAGGTATATAATC
GTTGAACTTTAACATATAATGTATTTAAAT	AGAAATTCTTTTACTCGTATATATAATTCCAATGAA
GTTGAACTTTAACATATAATGTATTTAAAT

>NZ_CP009933|1|1|753473-754290|CRISPRCasFinder
GTTGAACTTTAACATATAATGTATTTAAAT	CGGGTATAGCTAACCTTATTTTTGGGTTGATATTAG
GTTGAACTTTAACATATAATGTATTTAAAT	TTTTTAAACTCCAAAATTTATATCATCTAAAGCTTT
GTTGAACTTTAACATATAATGTATTTAAAT	TTATTGGCTATGACTTGTAAATTGTTTGAAGGGTTG
GTTGAACTTTAACATATAATGTATTTAAAT	TAGCCAATAATGATATGACAGTTACTATTAAAGCAG
GTTGAACTTTAACATATAATGTATTTAAAT	AGAGCTGGACAGACTTAGTCCCTGGAATCGTTAGCAA
GTTGAACTTTAACATATAATGTATTTAAAT	GATAACTGTGCATATATTTGAGTAGTTGCTGGTGT
GTTGAACTTTAACATATAATGTATTTAAAT	AATAATGATACACAATGCAAGTGGTTGTTTTGGTGG
GTTGAACTTTAACATATAATGTATTTAAAT	ACCATGTTGGTGGTCTTATCTTATTACTCTGCAACT
GTTGAACTTTAACATATAATGTATTTAAAT	TATCGAAGTAACTGACTAAGTGGTACACAATACAA
GTTGAACTTTAACATATAATGTATTTAAAT	CTTTTTCGTATATCAAAACCTGAAGGTATATAATC
GTTGAACTTTAACATATAATGTATTTAAAT	AGAAATTCTTTTACTCGTATATATAATTCCAATGAA
GTTGAACTTTAACATATAATGTATTTAAAT	CACATACAGTATAGCTCTTTTATTCGTATTGTTA
GTTGAACTTTAACATAGGATGTATTTATGA

>NZ_CP009933|1|1|753473-754340|CRT
GTTGAACTTTAACATATAATGTATTTAAAT	CGGGTATAGCTAACCTTATTTTTGGGTTGATATTAG
GTTGAACTTTAACATATAATGTATTTAAAT	TTTTTAAACTCCAAAATTTATATCATCTAAAGCTTT
GTTGAACTTTAACATATAATGTATTTAAAT	TTATTGGCTATGACTTGTAAATTGTTTGAAGGGTTG
GTTGAACTTTAACATATAATGTATTTAAAT	TAGCCAATAATGATATGACAGTTACTATTAAAGCAG
GTTGAACTTTAACATATAATGTATTTAAAT	AGAGCTGGACAGACTTAGTCCCTGGAATCGTTAGCAA
GTTGAACTTTAACATATAATGTATTTAAAT	GATAACTGTGCATATATTTGAGTAGTTGCTGGTGT
GTTGAACTTTAACATATAATGTATTTAAAT	AATAATGATACACAATGCAAGTGGTTGTTTTGGTGG
GTTGAACTTTAACATATAATGTATTTAAAT	ACCATGTTGGTGGTCTTATCTTATTACTCTGCAACT
GTTGAACTTTAACATATAATGTATTTAAAT	TATCGAAGTAACTGACTAAGTGGTACACAATACAA
GTTGAACTTTAACATATAATGTATTTAAAT	CTTTTTCGTATATCAAAACCTGAAGGTATATAATC
GTTGAACTTTAACATATAATGTATTTAAAT	AGAAATTCTTTTACTCGTATATATAATTCCAATGAA
GTTGAACTTTAACATATAATGTATTTAAAT	CACATACAGTATAGCTCTTTTATTCGTATTGTTA
GTTGAACTTTAACATAGGATGTATTTATGA	ATTAAGATTTTCTTCAAATA
TTTGAAATTTAACTTAACAAAAATTTATTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009933.1\|WP_029160895.1\|749142_750243_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NZ_CP009933.1\|WP_029160905.1\|763863_764313_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009933.1\|WP_029160898.1\|752655_753072_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP009933.1\|WP_029160900.1\|755248_755695_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009933.1\|WP_029160889.1\|742468_743272_+\|lipid-II-flippase-Amj-family-protein	unknown	unknown	gnl\|CDD\|378535
NZ_CP009933.1\|WP_046065941.1\|768663_770328_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
NZ_CP009933.1\|WP_029160890.1\|743976_745092_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|377130
NZ_CP009933.1\|WP_029160903.1\|760802_763202_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237306
NZ_CP009933.1\|WP_029160902.1\|756874_757429_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP009933.1\|WP_029160899.1\|754364_754835_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009933.1\|WP_029160896.1\|750246_751752_+\|hypothetical-protein	csx1	mkCas0085_csx1_CAS-III	unknown
NZ_CP009933.1\|WP_029160893.1\|746490_747378_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NZ_CP009933.1\|WP_029160891.1\|745094_746129_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NZ_CP009933.1\|WP_029160892.1\|746121_746475_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378242
NZ_CP009933.1\|WP_029160897.1\|751744_752638_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP009933.1\|WP_029160894.1\|747391_749146_+\|hypothetical-protein	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP009933.1\|WP_029160904.1\|763376_763790_+\|DUF3788-domain-containing-protein	unknown	unknown	gnl\|CDD\|378906
NZ_CP009933.1\|WP_029159877.1\|770461_771169_+\|hypothetical-protein	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP009933.1\|WP_046065939.1\|756442_756754_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP009933.1\|WP_046065940.1\|764462_766145_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108

Protein	Function_ID	Function_description	E-value
NZ_CP009933.1\|WP_029160895.1\|749142_750243_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.2341e-49
NZ_CP009933.1\|WP_029160898.1\|752655_753072_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.06452e-24
NZ_CP009933.1\|WP_029160889.1\|742468_743272_+\|lipid-II-flippase-Amj-family-protein	gnl\|CDD\|378535	pfam10997, Amj, Alternate to MurJ. This bacterial family of proteins has no known function. However, family members include lipid II flippase Amj, which is required for bacterial cell wall synthesis. It transports lipid-linked peptidoglycan precursors from the inner to the outer surface of the cytoplasmic membrane.	4.84834e-106
NZ_CP009933.1\|WP_029160890.1\|743976_745092_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	4.97954e-11
NZ_CP009933.1\|WP_029160903.1\|760802_763202_+\|valine--tRNA-ligase	gnl\|CDD\|237306	PRK13208, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP009933.1\|WP_029160902.1\|756874_757429_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	4.4025e-30
NZ_CP009933.1\|WP_046065939.1\|756442_756754_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.00674e-33
NZ_CP009933.1\|WP_029160899.1\|754364_754835_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.6391e-11
NZ_CP009933.1\|WP_029160893.1\|746490_747378_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.20167e-40
NZ_CP009933.1\|WP_029160891.1\|745094_746129_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.75792e-67
NZ_CP009933.1\|WP_029160892.1\|746121_746475_+\|hypothetical-protein	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	7.06938e-05
NZ_CP009933.1\|WP_029160897.1\|751744_752638_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	8.03623e-59
NZ_CP009933.1\|WP_029160894.1\|747391_749146_+\|hypothetical-protein	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.29366e-19
NZ_CP009933.1\|WP_029160904.1\|763376_763790_+\|DUF3788-domain-containing-protein	gnl\|CDD\|378906	pfam12663, DUF3788, Protein of unknown function (DUF3788). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length. This family may be distantly related to RelE proteins.	3.07961e-45
NZ_CP009933.1\|WP_029159877.1\|770461_771169_+\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	6.92105e-07
NZ_CP009933.1\|WP_046065941.1\|768663_770328_+\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	1.73763e-72
NZ_CP009933.1\|WP_046065940.1\|764462_766145_+\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	1.42755e-69

>NZ_CP009933.1|WP_029160898.1|752655_753072_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MSENSKIININRLRAGISYNNLKDYLNMDNINEINRNKVKSYCRKLPVLIKTNGLLSALSFIKGKVKKENEKEKNEYFYIYSWIESWLNYIEYTDKSNLHNDIIEKIINANSASYRIYTKEAIEISVWYKRHAEAMIK
>NZ_CP009933.1|WP_029160897.1|751744_752638_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNKNINKIKGDSKEDQQYIKSKLIILKTMTPLHVGAGEGSGIADLPIQREAATNIPKVESSTFKGSLRCSCEKMLDEEHVKILFGNENNKTGEIAFTDLRLLFFPVKSSKNIFSLISCPYVLERFYDDIILYKTKLISGIKDLLTNMRMLDSNIAVTLNSDQENIYLEDYLFKTEKIHIEKLFSNIHGLEKMLSRIVIISNDNFIDFVNYYTEVITRNKIDAETGTAKNTALFTEEYVPEEAIFYGVISRFHDIFDKNKNKNVYEEFIKNFEFGEKLNKFRIGGNLSLGKGIVKIIN
>NZ_CP009933.1|WP_029160896.1|750246_751752_+|hypothetical-protein
MKLKEVFGNIDTYVMCSTLNQIVNYIPIKLIEENNKAKLETIKIINLTVKNKSEKNSIFKRFDNEKWDENLKACLQDINIKDVNIERNELDISNKLGFLIQNENHEEEGEDELNNNIYKEEKTILWNITGGQRTTIIAIQKYIRENKRYKDYIMYLEGNSNKIIIGNFKKKCGFNYEKLEEPYALKYLNLQTVFKLAGFEINNYDKVHNFLKENHNENDDKEYKELEVCNKIYKYYKNLESDFGEYFRKNLPRLNKIKNGIDMKQLIGEIEKSKFGKKFKEEFNDDQKKILENLKRKDKNKGSKADEQSKKDNESKNKQFGYILEYMAINSIKDCIKEDPKLSNYFIELCHSVNLKKLKNPLVQSKTSELCEFDLVLLSKSGQVVIFECKSGTMSSDVGKARQYTGYAAAGVYGKPILITPLLENHRRNICNAFKTNSDNSNLKAEKTDEICSESQKFDEAVLEAFRAAARANLDVWGMDEIHEKLNELYYEVLNVGEKNE
>NZ_CP009933.1|WP_029160895.1|749142_750243_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MRECYFKIKPSDTLFFRDGHPFLKRLNNYLESLNVPYPSVFYGAIFSALLRQGNFKDILNSIRNKDNEIETKLEKNFNITGVYLYDEIKNELYVKAPLDLFEDGNSKSFGLYKDGFLYSPTGANKFNRCDDKFISLSDLIKHYSSRNVNEITLYPSKYFFTNYSKIGIEIDRQKRTVKEEHLYRINMVEFSDKRFSYLLKCEIDLNEDEIKDDVIRLGGESKIASFTHTFKELSAIKELNEFYNNTIVYGDKIKLILTTPMIIEKSSQDKKDDFDNFINNNNIECVVTGKPEYIGGFDMARNHQKNIRKAIPAGSVLIMKNNKFRNVSINQILDDSCEKYINLKNIEDNFRGFGSIIIMPFRRGDD
>NZ_CP009933.1|WP_029160894.1|747391_749146_+|hypothetical-protein
MHNKLMLITIAGIQEYISNARKTADFFNGSKIITEFLKEIYEIVKHFEGYKDFDTILPCELDKHELDIPNYFIAKVSSNLENNELENKLRKILSKSLKNNFNKIYCYLNLDVYIVVVDFKSSYQVSYKSMYKKLDGYKNNRFRDYSLIYNIHENKNFDLQNCTICGKNRGKYISNTNIELIKTEQYYTSENKYIKDKEVLCEDCLRKRKYDYHKEYPSTVDIAVMEWIDEVNKNEKIQHYDKMIGSIVNNKRDCIANFYHLDYIYSHVEGNMCDEYVKALDEINNLDRKDQKCKVGNASRYYALIKADIDDLGKHFNGKYLKESIKNDDIIFEKFQKRLSKEILKLSEGVKEKLYSFKNNYETKKLDIYLGGDDLLFFCPLYKVFEIVKFIDERIKNINIEDNEKNLTISKSIVVAHDSVPLTQVINLSRKSLDIAKEKFEKQGKNALVISIINSSGIVRTSYLKNERKTVDELVNLINGFKNYISSGFISNIERQLFLLGENMSLEEYEVLMNVIMNVIERVASKQIKDNEIKCKENLKYLISKFVYVNSSNYFLDLKGYFNLLYILKKYSIEIINDINGGSI
>NZ_CP009933.1|WP_029160893.1|746490_747378_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MAKCKFYLNTDNLRFDTLERSNNVELDSNNINNNLILNKYIYEKIDFKNYKFNQSFQSLLEYIKEKQEHIVELYKDNYICCKESFSLNECSKLAIGLGEVSVREVSIKLDHIYGIPFIPASSLKGAFRSYLNEKYSKSNNKENIIITELFGTEDKKGKIIFFDAYPEKFQLGLDIMTPHYIKYYSNGEKPLDSLKPNPIKFPVVKEGAKFKFTILCEKNYFIELNKLSKEKFKFTTLYKKLKHMLDNLNRADLKKLGEKNKFKKSNIQKEFEQFLKKKPLGAKTSVGYGCFEKLK
>NZ_CP009933.1|WP_029160892.1|746121_746475_+|hypothetical-protein
MISSSVEKSRFILKSIKDGCFTIKDLSISEIQKLPMMIRINGLAASLEYLLKKDELKVKNVGKFCIKYISDYTSIKIDSSEITDLKEIKCDRYMCLQKDLYEFSLMLRRLVIAFEKK
>NZ_CP009933.1|WP_029160891.1|745094_746129_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MSNLILYKCETPLHVGSGTELGLVDMPIQREKHTGFPKIESSGIKGVIRTDFNQDKTYKSYTNILFGPEDDGSKFAGSLQFTDAKILFFPVKTAKGTFGWITCPFILSRFKNDLEVNDVNTNDIKINEEYIKLGIEANKEFVIANKESNLIIKRENSMYILLEEFGYKVINDDTNILNKVNKLIEKMDLNKYIKDKLKRDIIIVNDDVFSYFLDMSTEINTRIRIGKDGVVEEGGLFTEEYVPEETIMYGFIDTFAISNCKIDLERFANKKFNGDCEKINIVEGSSENSKENEILKLKIEKNFVKYLNIKKVFQFGGNSTLGKGFTSVHVINGEVKEKGDVIND
>NZ_CP009933.1|WP_029160890.1|743976_745092_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MGEIKLKCRFLTPAFIYGDNNQLELRASSIKGLIRFWWRAVNEFGNIEEMRNEESEIFGGKLLKKGKEEFIKAKVQILTEIIKNNNKELKKSLLDEYEDYSGIKYLFYSIGINDKKNRNFFNKGTEFKVKFKFKDEDSKYVREYIKAFNTLQLFGGIGCRSRRGAGNFIVEEVEGDPCGISKQEILRNLYEEESGTDILEVYKKVFKENKSNCELRYSNIISESTKACLLSLNKKNLLVNNNYEDKPFAILKKLIDNFDFEENLDEIAEKYRIFRKETNYNKCNDRGASPLIIKVVKDREECKILLIKLSGERLEYCKEKSKLKKNSIGNENDKSSKEFKLNEEDKIVDEFLDKFIKENNKNEIEVINLRG
>NZ_CP009933.1|WP_029160889.1|742468_743272_+|lipid-II-flippase-Amj-family-protein
MTSQIYIVFILTFTIFLIGTLAYSARVVGVKTGRIAVAAAVFNVFVLIQRTASTIQAPLLGKAVDNSISTGQTSDLLYVFRWIIFSITLATITGAILMPTFIKIFNKLVVSFSVYRSVPKLVFHAFSKSGIEQFKNSISIPKKENLYELRNFKKIPKKVVLLNMIAFSVSSISVLAALYAACLSPNLRTTCTTLSSVINSVSTIFMVIFIDPYLSMTTDDVIRGDCTELEFNRCVIFIIVGLIVGSILAQFMLIPASKLIVIIAKLI
>NZ_CP009933.1|WP_029160899.1|754364_754835_+|GNAT-family-N-acetyltransferase
MDITIIKGNINYIDECEAALVNSELGIRYFDKKGSAREALMEGFDKGQVYVAIDDNNNCKGFIWVILNGAFHSFPYLHIIAVNQESRSKGIGKKLLKFFEDICFKDYNKLFLVVGDFNSAARILYEKIGYVQVGTIPDLYREGITENLMMKSREEN
>NZ_CP009933.1|WP_029160900.1|755248_755695_-|hypothetical-protein
MENMVTVSKSAVGISILFILYLVTFTINLPLIIDSKLSYFNFFATVFYLLAWTGYGIYLYNKKELAFFLYALAYWILVMVASITPNILFIIIFFTPLCGLRMFFVWLNYPANLAFENEPYAYLFISIIFVTLSVLAIILIKSNKKLNG
>NZ_CP009933.1|WP_046065939.1|756442_756754_-|helix-turn-helix-transcriptional-regulator
MEDCYVKYAMDVIGGKWKLLIIWTMYQNGVIRFNELQRKVEGISSLMLSKNLKELEKDCLIVRHQYNEIPPRVEYELSELSEKLIVVLESLSNWGYEVYKYKK
>NZ_CP009933.1|WP_029160902.1|756874_757429_+|flavodoxin-family-protein
MSKVVIFKGSPRKNGYTSRLLEQVAKGAKSKGAEVIEFDLNDPGIRGCQGCYYCRTHDGCAVNDYLQPMYKAIDEADAIVFGSPIYYYQITGQARVWLDRTFPMVGENFAPRHSGKKAITIFAQGNPNPQIAEEGIKFVTNIFETYGWKIEDSIHYCGTSSNPDLEKFEELSLRAFKDGENLVG
>NZ_CP009933.1|WP_029160903.1|760802_763202_+|valine--tRNA-ligase
MLDKKYDPIKNEKKWQKFWQENRIYKYDFVSDKKTFSIDTPPPTISGSLHIGHIFSYTQAEIIARFHMMQGENVFYPFGFDDNGLPTERLIEKEENIRANSIPRSEFTEKCMVTTKKYEEDFKNLWMSMGFSVDWSLQYKTIGSTARKISQKAFLDMAKLRKAYIKESPVLWCTTCRTSIAQAELESADKETTFNYVTFICEDSELIIATTRPELLYSCVCLFINPEDERYLKYLGKRALVPLYNYEIPIFSDEKVSMDKGTGIVMCATFGDTTDVEWYKKYKLPYRKTIEENGKISEGVPFIGGLGTLNAREKIIQLLKDNNLLVKSETITHSVSIHERCGKAIEIIPSKQWYIDILSEKERYLKAADEINWYPASMKNKYITWVENLKWDWCISRQRYFGVPFPIWYCKKCGKPIFAKDEELPINPIETNPSDPCSCGSTDFIPETAVFDTWATSSLTPLINSKWNTDKDMTEELLPMGMRTQAHEIIRTWTFYTIVRSLFHTGKIPWKDIMLCGFVLAKKGEKISKSKNNAPSSPKELIKRHSADALRYWASSAKLGTDTMFSEEELKTSKRFLNKLWNASAFCIMQLEDYDEVKPIKLLPIDKWILEKIKILEKNSIENLNQYETGLAKHDIDEFFWNDFCDNYLEIIKDRLYKPEIHGKDERLSGQYTLYNALLEILKLYSIYVPHITEEVYQSFYRNFENCISIHKMQWNMKFDNNDENILQFGENVKKIIGEVRRYKSERNLSLKEKINILKISIPKSYEEYITQTLKDIKACTWAEDIEVKFSDKYDVEIL
>NZ_CP009933.1|WP_029160904.1|763376_763790_+|DUF3788-domain-containing-protein
MLDKIPTNEDLIALIGKPLFEVWTALCDMIEEKYDMEHLWNNGGKAWKYEYKYRRGGKTLCALYAKENCFGFMIIFGKNERAKFEEDKQNYSIEVQKVYDESKTYHDGKWMMFELTDTSLFGDMEKMLFIKRKSNKK
>NZ_CP009933.1|WP_029160905.1|763863_764313_+|hypothetical-protein
MKALSIDANDEEIKDLVIEWNELLAAEKYEEALSMFPSHKLEVEWTPELLEQAVYGYGVVGYTREEIKEMFGPEDYKVTSIFDNKEKNKIINSIEVSRDWNFKDENIIGMVHYDCVPLNGELSDLTARFHIRKIYDNNVTLEFLDLHVM
>NZ_CP009933.1|WP_046065940.1|764462_766145_+|AAA-family-ATPase
MKKISIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLLPRPRRFGKTINMSMLKYFFEKTDEDNSFLFKELNIYKCKDVMEKQGKYPVIYLTFKDEKYLSWKDCKSGMKFVIGNEFKRHKYLLESNIMDYEEKETYKDIMNLKADDIYYHKSLLSLSMYLSKYYNKKAVIIIDEYDVPIQGGYTGDYYEDIISFMRNFLSGGLKDNIYLEKAILTGILRVAKESIFSGLNNLSVNTIINKKYSSSFGFLENEVENILKYFKVESKLSEIKNWYNGYVFGENIIYNPWSILNYVKKWDEGFQPYWINTSSNDLVKSLITKGGQQLKSELEDLIQDKSITKEINENIEMKEIDKSTENVWSFLLLSGYLKTVKKTRKPDGRLVCELAIPNIEVKYLYNEIIMSWLKESVNNDEFNLMLNSLTNGDIENFEDIFADYVVKSFSYFDIGDESENFYHAFVLGILVALNNKYRVKSNRESGYGRYDIMIIPKDIGKNGIIIEFKKVNKRRKETLNTAAENALAQIKTMNYRQELIELRVKNIIELGIAFEGKDVFVLKSSDS
>NZ_CP009933.1|WP_046065941.1|768663_770328_+|AAA-family-ATPase
MKKIPIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLLPRPRRFGKTINMSMLKYFFEKTDEDNSFLFEKLNIYEHKDIMGKQGVYPVIYITFKDLKDKNIDKCYEKIKEILSEQYDKFQFILDTLSEVDKMYYNDILLGKASEAQYETSLKNLSKFLSKYYGVNVVILIDEYDVPIQSGYLNDYYEDIVEFMRNFLSGGVKDNEYLEKAVMTGILRVAKESIFSGLNNLSVYGILKNKYSSYFGFSEVEIEEIFKYYEVEFKLDEVKSWYNGYVFGENIIYNPWSILNYVNNYEEGLQPYWINTSSNDLVKSLITKGGQQLKSELEDLIQDKSITKDINENIEMKEIDKSTENAWSFLLLSGYLKTVKKTRKPDGRLVCELAIPNIEVKYLYNEIIMSWLKESVNNDEFNLMLNSLTNGDIENFEDIFADYVVKSFSYFDIGDESENFYHAFVLGILVALNNKYRVKSNRESGYGRYDIMIIPKDKNKIGIIMEFKKVDRDDEEDLKKAAEEGLKQIRERKYKQELIAREIKNIIEIGVAFEGKDVMVLT
>NZ_CP009933.1|WP_029159877.1|770461_771169_+|hypothetical-protein
MRIFECNFKVFLIKNISKEDVQEAISKLIDKSFYKNESLKDFHEENRIKGYCFNSLYPISINKDYGEGEIYNFQIRCVGEELKNHFVKFLTNEYTTHIKALTCESKSIFKKPIDRVYSITPAVIKISDLEKTEYWRNKHNEEDFFEYIRENSIKKYEVLTGEKVDRSLRIFTYERVDNRTPIATNFKGRRMLGDKITLTVDTGIEAQNIAYMLLGTGIGDMSPRGYGYMNYQYIK

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Crispr_ID: NZ_CP009933_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009933_2

757646-760176

TypeIII

III-B

Consensus_repeat	Method
GTTGAACTTTAACATAGGATGTATTTAAAT	PILER-CR
GTTGAACTTTAACATAGGATGTATTTAAAT	CRISPRCasFinder
GTTGAACTTTAACATAGGATGTATTTAAAT	CRT
GTTGAACTTTAACATAGGATGTATTTAAAT	PILER-CR

38 spacers

cmr5gr11,cmr4gr7,csx1,cmr3gr5,cas10,cmr6gr7,cas6

The CRISPR arrays of NZ_CP009933_2

>merge|NZ_CP009933|2|757646-760176|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTGAACTTTAACATAGGATGTATTTAAATTTTTAAAAAACTGGTAAAAAATTATACTGGAGTTGGTTGAACTTTAACATAGGATGTATTTAAATATGTTTCCAATTTTAATGTGCTTATTTACTATTTCCGTTGAACTTTAACATAGGATGTATTTAAATTATACTCCTGATCCGTTGCCTTCTTTAGTTGTTAGTTGAACTTTAACATAGGATGTATTTAAATTTACTATAGTCAATTAATTCTTCTAGTACTGTACTAGTTGAACTTTAACATAGGATGTATTTAAATTTGGAAACAGCAGCTATAAAGTTGGAACAAACTTTAGGTTGAACTTTAACATAGGATGTATTTAAATTAATCCTTTCCTGCTGTAGTAATTATAACTAACAGTGTTGAACTTTAACATAGGATGTATTTAAATATGGTGATGTCCTATTGTTCGTGCAGACAACCCTCCGTTGAACTTTAACATAGGATGTATTTAAATGATTTAAAAGACTTCTATGACAAGAAACTCGATTCAGTTGAACTTTAACATAGGATGTATTTAAATGAGACTAGGGATGGTCTTTTTATTTTGACTATTTTGGTTGAACTTTAACATAGGATGTATTTAAATATGTTATGTTCTAAATCAATCCATTCACCCATAGGTTGAACTTTAACATAGGATGTATTTAAATTTAGAGTTCTAACAGCTACATTAGTTCTTAAAGCTGGTTGAACTTTAACATAGGATGTATTTAAATTTAATGCTTCCATTCTATTTATTCTCTAAAACACCAGTTGAACTTTAACATAGGATGTATTTAAATAAACGACTTCGCCATTTATCCTGCTTACCTCTCTTTGTTGAACTTTAACATAGGATGTATTTAAATAAATCTGCACCAACTTTTACTGCTGCTGCAGCAACCGTTGAACTTTAACATAGGATGTATTTAAATTTTTCTATAAAGTATGCAAATAAATCCAAACCTTTAGTTGAACTTTAACATAGGATGTATTTAAATTCTTCCTCTAGTCCTAAATACTTTTTAGCTTCATTTGTTGAACTTTAACATAGGATGTATTTAAATAATAATCAAAATGCTCTTTACCTTTGCAAAATGTTTGTTGAACTTTAACATAGGATGTATTTAAATTTTTTAAACTCCAAAATTTATATCATCTAAAGCTTTGTTGAACTTTAACATAGGATGTATTTAAATTTGCCTGCAATTATTGCATGACATCCACCATAATTGGTTGAACTTTAACATAGGATGTATTTAAATGCCTTTGTTGTTATTGTAGTGAGAGGTTTATCTAATGTTGAACTTTAACATAGGATGTATTTAAATTAACATAATTAAACGCAATGTAGGAATTTACGTAAAGTTGAACTTTAACATAGGATGTATTTAAATAATAATAGATATCTGCAAAGAAAATGATATGCAAAGTTGAACTTTAACATAGGATGTATTTAAATTTACATAAGGCTTTTGAGCCACATACCCTAGTCTAAGTTGAACTTTAACATAGGATGTATTTAAATTAGGAATAGATTTAAAAGCATTATTGCTTGTAATGGGTTGAACTTTAACATAGGATGTATTTAAATATTTATGTAAGAATCTATTAAAACAATTAAAAAAAGTTGAACTTTAACATAGGATGTATTTAAATTTAAAGATCATAACTATTTTAAATAAAATAATTACAGTTGAACTTTAACATAGGATGTATTTAAATAAAGAACAATGTGAACAGGAATTAAAAGTTGTTAGATGTTGAACTTTAACATAGGATGTATTTAAATATGGATTTAATATTATGTTATTCATATTTTTACCCTGTTGAACTTTAACATAGGATGTATTTAAATCGATTGGGAAAATCTTTACCTAATATAAACCCAGGAGTTGAACTTTAACATAGGATGTATTTAAATTTGCCTCCCAAATATTATAACTTTTTATAACTTCTCGTTGAACTTTAACATAGGATGTATTTAAATAGCATGTTAGTTAGTATATCTTTGAATATAGCTTCGTTGAACTTTAACATAGGATGTATTTAAATATAGCTGTTAATCCAGTAGCAGGTATCAAATATGGAGTTGAACTTTAACATAGGATGTATTTAAATTTATAAAATGAATTCCCTGTATATATACCAATTCCAGTTGAACTTTAACATAGGATGTATTTAAATTTGCTCTGCAGTTATTAGCCTATAATCTTCAAATCGTTGAACTTTAACATAGGATGTATTTAAATTGGAGCTGTGATAAAGATTCCGTAGGTATAAGTCTTGTTGAACTTTAACATAGGATGTATTTAAATCATATTCTTGAATTTATACAGAGTAAAGAGGTGAAAGTTGAACTTTAACATAGGATGTATTTAAATACTATTTGTACATCAAATGTGGTATCTCCTTGTGTGTTGAACTTTAACATAGGATGTATTTAAATGATTGTCCTACATAATAAGTTGCATTATTAAGTGCTAGCTGAACTTTAACATATGATGTATACATGA

>NZ_CP009933|2|2|757646-759912|PILER-CR
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTAAAAAACTGGTAAAAAATTATACTGGAGTTG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGTTTCCAATTTTAATGTGCTTATTTACTATTTCC
GTTGAACTTTAACATAGGATGTATTTAAAT	TATACTCCTGATCCGTTGCCTTCTTTAGTTGTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTACTATAGTCAATTAATTCTTCTAGTACTGTACTA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGGAAACAGCAGCTATAAAGTTGGAACAAACTTTAG
GTTGAACTTTAACATAGGATGTATTTAAAT	TAATCCTTTCCTGCTGTAGTAATTATAACTAACAGT
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGGTGATGTCCTATTGTTCGTGCAGACAACCCTCC
GTTGAACTTTAACATAGGATGTATTTAAAT	GATTTAAAAGACTTCTATGACAAGAAACTCGATTCA
GTTGAACTTTAACATAGGATGTATTTAAAT	GAGACTAGGGATGGTCTTTTTATTTTGACTATTTTG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGTTATGTTCTAAATCAATCCATTCACCCATAG
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAGAGTTCTAACAGCTACATTAGTTCTTAAAGCTG
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAATGCTTCCATTCTATTTATTCTCTAAAACACCA
GTTGAACTTTAACATAGGATGTATTTAAAT	AAACGACTTCGCCATTTATCCTGCTTACCTCTCTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	AAATCTGCACCAACTTTTACTGCTGCTGCAGCAACC
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTCTATAAAGTATGCAAATAAATCCAAACCTTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	TCTTCCTCTAGTCCTAAATACTTTTTAGCTTCATTT
GTTGAACTTTAACATAGGATGTATTTAAAT	AATAATCAAAATGCTCTTTACCTTTGCAAAATGTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTTAAACTCCAAAATTTATATCATCTAAAGCTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGCCTGCAATTATTGCATGACATCCACCATAATTG
GTTGAACTTTAACATAGGATGTATTTAAAT	GCCTTTGTTGTTATTGTAGTGAGAGGTTTATCTAAT
GTTGAACTTTAACATAGGATGTATTTAAAT	TAACATAATTAAACGCAATGTAGGAATTTACGTAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	AATAATAGATATCTGCAAAGAAAATGATATGCAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTACATAAGGCTTTTGAGCCACATACCCTAGTCTAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TAGGAATAGATTTAAAAGCATTATTGCTTGTAATGG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATTTATGTAAGAATCTATTAAAACAATTAAAAAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAAAGATCATAACTATTTTAAATAAAATAATTACA
GTTGAACTTTAACATAGGATGTATTTAAAT	AAAGAACAATGTGAACAGGAATTAAAAGTTGTTAGAT
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGGATTTAATATTATGTTATTCATATTTTTACCCT
GTTGAACTTTAACATAGGATGTATTTAAAT	CGATTGGGAAAATCTTTACCTAATATAAACCCAGGA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGCCTCCCAAATATTATAACTTTTTATAACTTCTC
GTTGAACTTTAACATAGGATGTATTTAAAT	AGCATGTTAGTTAGTATATCTTTGAATATAGCTTC
GTTGAACTTTAACATAGGATGTATTTAAAT	ATAGCTGTTAATCCAGTAGCAGGTATCAAATATGGA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTATAAAATGAATTCCCTGTATATATACCAATTCCA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGCTCTGCAGTTATTAGCCTATAATCTTCAAATC
GTTGAACTTTAACATAGGATGTATTTAAATTGGAGCTGTGATAAAGATTCCGTAGGTATAAGTCTTGTTGAACTTTAACATAGGATGTATTTAAAT	CATATTCTTGAATTTATACAGAGTAAAGAGGTGAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	ACTATTTGTACATCAAATGTGGTATCTCCTTGTGT


>NZ_CP009933|2|2|757646-760176|CRISPRCasFinder
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTAAAAAACTGGTAAAAAATTATACTGGAGTTG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGTTTCCAATTTTAATGTGCTTATTTACTATTTCC
GTTGAACTTTAACATAGGATGTATTTAAAT	TATACTCCTGATCCGTTGCCTTCTTTAGTTGTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTACTATAGTCAATTAATTCTTCTAGTACTGTACTA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGGAAACAGCAGCTATAAAGTTGGAACAAACTTTAG
GTTGAACTTTAACATAGGATGTATTTAAAT	TAATCCTTTCCTGCTGTAGTAATTATAACTAACAGT
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGGTGATGTCCTATTGTTCGTGCAGACAACCCTCC
GTTGAACTTTAACATAGGATGTATTTAAAT	GATTTAAAAGACTTCTATGACAAGAAACTCGATTCA
GTTGAACTTTAACATAGGATGTATTTAAAT	GAGACTAGGGATGGTCTTTTTATTTTGACTATTTTG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGTTATGTTCTAAATCAATCCATTCACCCATAG
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAGAGTTCTAACAGCTACATTAGTTCTTAAAGCTG
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAATGCTTCCATTCTATTTATTCTCTAAAACACCA
GTTGAACTTTAACATAGGATGTATTTAAAT	AAACGACTTCGCCATTTATCCTGCTTACCTCTCTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	AAATCTGCACCAACTTTTACTGCTGCTGCAGCAACC
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTCTATAAAGTATGCAAATAAATCCAAACCTTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	TCTTCCTCTAGTCCTAAATACTTTTTAGCTTCATTT
GTTGAACTTTAACATAGGATGTATTTAAAT	AATAATCAAAATGCTCTTTACCTTTGCAAAATGTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTTAAACTCCAAAATTTATATCATCTAAAGCTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGCCTGCAATTATTGCATGACATCCACCATAATTG
GTTGAACTTTAACATAGGATGTATTTAAAT	GCCTTTGTTGTTATTGTAGTGAGAGGTTTATCTAAT
GTTGAACTTTAACATAGGATGTATTTAAAT	TAACATAATTAAACGCAATGTAGGAATTTACGTAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	AATAATAGATATCTGCAAAGAAAATGATATGCAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTACATAAGGCTTTTGAGCCACATACCCTAGTCTAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TAGGAATAGATTTAAAAGCATTATTGCTTGTAATGG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATTTATGTAAGAATCTATTAAAACAATTAAAAAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAAAGATCATAACTATTTTAAATAAAATAATTACA
GTTGAACTTTAACATAGGATGTATTTAAAT	AAAGAACAATGTGAACAGGAATTAAAAGTTGTTAGAT
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGGATTTAATATTATGTTATTCATATTTTTACCCT
GTTGAACTTTAACATAGGATGTATTTAAAT	CGATTGGGAAAATCTTTACCTAATATAAACCCAGGA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGCCTCCCAAATATTATAACTTTTTATAACTTCTC
GTTGAACTTTAACATAGGATGTATTTAAAT	AGCATGTTAGTTAGTATATCTTTGAATATAGCTTC
GTTGAACTTTAACATAGGATGTATTTAAAT	ATAGCTGTTAATCCAGTAGCAGGTATCAAATATGGA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTATAAAATGAATTCCCTGTATATATACCAATTCCA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGCTCTGCAGTTATTAGCCTATAATCTTCAAATC
GTTGAACTTTAACATAGGATGTATTTAAAT	TGGAGCTGTGATAAAGATTCCGTAGGTATAAGTCTT
GTTGAACTTTAACATAGGATGTATTTAAAT	CATATTCTTGAATTTATACAGAGTAAAGAGGTGAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	ACTATTTGTACATCAAATGTGGTATCTCCTTGTGT
GTTGAACTTTAACATAGGATGTATTTAAAT	GATTGTCCTACATAATAAGTTGCATTATTAAGTGCTA
GCTGAACTTTAACATATGATGTATACATGA

>NZ_CP009933|2|2|757646-760176|CRT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTAAAAAACTGGTAAAAAATTATACTGGAGTTG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGTTTCCAATTTTAATGTGCTTATTTACTATTTCC
GTTGAACTTTAACATAGGATGTATTTAAAT	TATACTCCTGATCCGTTGCCTTCTTTAGTTGTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTACTATAGTCAATTAATTCTTCTAGTACTGTACTA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGGAAACAGCAGCTATAAAGTTGGAACAAACTTTAG
GTTGAACTTTAACATAGGATGTATTTAAAT	TAATCCTTTCCTGCTGTAGTAATTATAACTAACAGT
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGGTGATGTCCTATTGTTCGTGCAGACAACCCTCC
GTTGAACTTTAACATAGGATGTATTTAAAT	GATTTAAAAGACTTCTATGACAAGAAACTCGATTCA
GTTGAACTTTAACATAGGATGTATTTAAAT	GAGACTAGGGATGGTCTTTTTATTTTGACTATTTTG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGTTATGTTCTAAATCAATCCATTCACCCATAG
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAGAGTTCTAACAGCTACATTAGTTCTTAAAGCTG
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAATGCTTCCATTCTATTTATTCTCTAAAACACCA
GTTGAACTTTAACATAGGATGTATTTAAAT	AAACGACTTCGCCATTTATCCTGCTTACCTCTCTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	AAATCTGCACCAACTTTTACTGCTGCTGCAGCAACC
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTCTATAAAGTATGCAAATAAATCCAAACCTTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	TCTTCCTCTAGTCCTAAATACTTTTTAGCTTCATTT
GTTGAACTTTAACATAGGATGTATTTAAAT	AATAATCAAAATGCTCTTTACCTTTGCAAAATGTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTTAAACTCCAAAATTTATATCATCTAAAGCTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGCCTGCAATTATTGCATGACATCCACCATAATTG
GTTGAACTTTAACATAGGATGTATTTAAAT	GCCTTTGTTGTTATTGTAGTGAGAGGTTTATCTAAT
GTTGAACTTTAACATAGGATGTATTTAAAT	TAACATAATTAAACGCAATGTAGGAATTTACGTAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	AATAATAGATATCTGCAAAGAAAATGATATGCAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTACATAAGGCTTTTGAGCCACATACCCTAGTCTAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TAGGAATAGATTTAAAAGCATTATTGCTTGTAATGG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATTTATGTAAGAATCTATTAAAACAATTAAAAAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAAAGATCATAACTATTTTAAATAAAATAATTACA
GTTGAACTTTAACATAGGATGTATTTAAAT	AAAGAACAATGTGAACAGGAATTAAAAGTTGTTAGAT
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGGATTTAATATTATGTTATTCATATTTTTACCCT
GTTGAACTTTAACATAGGATGTATTTAAAT	CGATTGGGAAAATCTTTACCTAATATAAACCCAGGA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGCCTCCCAAATATTATAACTTTTTATAACTTCTC
GTTGAACTTTAACATAGGATGTATTTAAAT	AGCATGTTAGTTAGTATATCTTTGAATATAGCTTC
GTTGAACTTTAACATAGGATGTATTTAAAT	ATAGCTGTTAATCCAGTAGCAGGTATCAAATATGGA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTATAAAATGAATTCCCTGTATATATACCAATTCCA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGCTCTGCAGTTATTAGCCTATAATCTTCAAATC
GTTGAACTTTAACATAGGATGTATTTAAAT	TGGAGCTGTGATAAAGATTCCGTAGGTATAAGTCTT
GTTGAACTTTAACATAGGATGTATTTAAAT	CATATTCTTGAATTTATACAGAGTAAAGAGGTGAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	ACTATTTGTACATCAAATGTGGTATCTCCTTGTGT
GTTGAACTTTAACATAGGATGTATTTAAAT	GATTGTCCTACATAATAAGTTGCATTATTAAGTGCTA
GCTGAACTTTAACATATGATGTATACATGA

>NZ_CP009933|2|3|759949-760109|PILER-CR
	TTTTAAAAAACTGGTAAAAAATTATACTGGAGTTG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGTTTCCAATTTTAATGTGCTTATTTACTATTTCC
GTTGAACTTTAACATAGGATGTATTTAAAT	TATACTCCTGATCCGTTGCCTTCTTTAGTTGTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTACTATAGTCAATTAATTCTTCTAGTACTGTACTA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGGAAACAGCAGCTATAAAGTTGGAACAAACTTTAG
GTTGAACTTTAACATAGGATGTATTTAAAT	TAATCCTTTCCTGCTGTAGTAATTATAACTAACAGT
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGGTGATGTCCTATTGTTCGTGCAGACAACCCTCC
GTTGAACTTTAACATAGGATGTATTTAAAT	GATTTAAAAGACTTCTATGACAAGAAACTCGATTCA
GTTGAACTTTAACATAGGATGTATTTAAAT	GAGACTAGGGATGGTCTTTTTATTTTGACTATTTTG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGTTATGTTCTAAATCAATCCATTCACCCATAG
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAGAGTTCTAACAGCTACATTAGTTCTTAAAGCTG
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAATGCTTCCATTCTATTTATTCTCTAAAACACCA
GTTGAACTTTAACATAGGATGTATTTAAAT	AAACGACTTCGCCATTTATCCTGCTTACCTCTCTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	AAATCTGCACCAACTTTTACTGCTGCTGCAGCAACC
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTCTATAAAGTATGCAAATAAATCCAAACCTTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	TCTTCCTCTAGTCCTAAATACTTTTTAGCTTCATTT
GTTGAACTTTAACATAGGATGTATTTAAAT	AATAATCAAAATGCTCTTTACCTTTGCAAAATGTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTTAAACTCCAAAATTTATATCATCTAAAGCTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGCCTGCAATTATTGCATGACATCCACCATAATTG
GTTGAACTTTAACATAGGATGTATTTAAAT	GCCTTTGTTGTTATTGTAGTGAGAGGTTTATCTAAT
GTTGAACTTTAACATAGGATGTATTTAAAT	TAACATAATTAAACGCAATGTAGGAATTTACGTAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	AATAATAGATATCTGCAAAGAAAATGATATGCAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTACATAAGGCTTTTGAGCCACATACCCTAGTCTAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TAGGAATAGATTTAAAAGCATTATTGCTTGTAATGG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATTTATGTAAGAATCTATTAAAACAATTAAAAAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAAAGATCATAACTATTTTAAATAAAATAATTACA
GTTGAACTTTAACATAGGATGTATTTAAAT	AAAGAACAATGTGAACAGGAATTAAAAGTTGTTAGAT
GTTGAACTTTAACATAGGATGTATTTAAAT	ATGGATTTAATATTATGTTATTCATATTTTTACCCT
GTTGAACTTTAACATAGGATGTATTTAAAT	CGATTGGGAAAATCTTTACCTAATATAAACCCAGGA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGCCTCCCAAATATTATAACTTTTTATAACTTCTC
GTTGAACTTTAACATAGGATGTATTTAAAT	AGCATGTTAGTTAGTATATCTTTGAATATAGCTTC
GTTGAACTTTAACATAGGATGTATTTAAAT	ATAGCTGTTAATCCAGTAGCAGGTATCAAATATGGA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTATAAAATGAATTCCCTGTATATATACCAATTCCA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGCTCTGCAGTTATTAGCCTATAATCTTCAAATC
GTTGAACTTTAACATAGGATGTATTTAAATTGGAGCTGTGATAAAGATTCCGTAGGTATAAGTCTTGTTGAACTTTAACATAGGATGTATTTAAAT	CATATTCTTGAATTTATACAGAGTAAAGAGGTGAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	ACTATTTGTACATCAAATGTGGTATCTCCTTGTGT
GTTGAACTTTAACATAGGATGTATTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009933.1\|WP_029160895.1\|749142_750243_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NZ_CP009933.1\|WP_029160905.1\|763863_764313_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009933.1\|WP_046065939.1\|756442_756754_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP009933.1\|WP_029160900.1\|755248_755695_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009933.1\|WP_029159874.1\|772748_773132_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319905
NZ_CP009933.1\|WP_029159872.1\|773700_774219_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009933.1\|WP_029160903.1\|760802_763202_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237306
NZ_CP009933.1\|WP_029160902.1\|756874_757429_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP009933.1\|WP_029160898.1\|752655_753072_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP009933.1\|WP_029160899.1\|754364_754835_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009933.1\|WP_029159873.1\|773229_773652_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319924
NZ_CP009933.1\|WP_029160896.1\|750246_751752_+\|hypothetical-protein	csx1	mkCas0085_csx1_CAS-III	unknown
NZ_CP009933.1\|WP_029160893.1\|746490_747378_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|187792
NZ_CP009933.1\|WP_029159876.1\|771438_772191_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|128898
NZ_CP009933.1\|WP_029160897.1\|751744_752638_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP009933.1\|WP_029160894.1\|747391_749146_+\|hypothetical-protein	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP009933.1\|WP_029160904.1\|763376_763790_+\|DUF3788-domain-containing-protein	unknown	unknown	gnl\|CDD\|378906
NZ_CP009933.1\|WP_029159877.1\|770461_771169_+\|hypothetical-protein	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP009933.1\|WP_046065941.1\|768663_770328_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
NZ_CP009933.1\|WP_046065940.1\|764462_766145_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108

Protein	Function_ID	Function_description	E-value
NZ_CP009933.1\|WP_029160895.1\|749142_750243_+\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.2341e-49
NZ_CP009933.1\|WP_046065939.1\|756442_756754_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.00674e-33
NZ_CP009933.1\|WP_029159874.1\|772748_773132_+\|VOC-family-protein	gnl\|CDD\|319905	cd07241, VOC_BsYyaH, vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YyaH. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	3.93742e-73
NZ_CP009933.1\|WP_029159872.1\|773700_774219_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.03542e-09
NZ_CP009933.1\|WP_029160903.1\|760802_763202_+\|valine--tRNA-ligase	gnl\|CDD\|237306	PRK13208, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP009933.1\|WP_029160902.1\|756874_757429_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	4.4025e-30
NZ_CP009933.1\|WP_029160898.1\|752655_753072_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.06452e-24
NZ_CP009933.1\|WP_029160899.1\|754364_754835_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.6391e-11
NZ_CP009933.1\|WP_029159873.1\|773229_773652_+\|VOC-family-protein	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.74894e-46
NZ_CP009933.1\|WP_029160893.1\|746490_747378_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.20167e-40
NZ_CP009933.1\|WP_029159876.1\|771438_772191_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|128898	smart00650, rADc, Ribosomal RNA adenine dimethylases.	1.39337e-17
NZ_CP009933.1\|WP_029160897.1\|751744_752638_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	8.03623e-59
NZ_CP009933.1\|WP_029160894.1\|747391_749146_+\|hypothetical-protein	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.29366e-19
NZ_CP009933.1\|WP_029160904.1\|763376_763790_+\|DUF3788-domain-containing-protein	gnl\|CDD\|378906	pfam12663, DUF3788, Protein of unknown function (DUF3788). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length. This family may be distantly related to RelE proteins.	3.07961e-45
NZ_CP009933.1\|WP_029159877.1\|770461_771169_+\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	6.92105e-07
NZ_CP009933.1\|WP_046065941.1\|768663_770328_+\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	1.73763e-72
NZ_CP009933.1\|WP_046065940.1\|764462_766145_+\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	1.42755e-69

>NZ_CP009933.1|WP_029160902.1|756874_757429_+|flavodoxin-family-protein
MSKVVIFKGSPRKNGYTSRLLEQVAKGAKSKGAEVIEFDLNDPGIRGCQGCYYCRTHDGCAVNDYLQPMYKAIDEADAIVFGSPIYYYQITGQARVWLDRTFPMVGENFAPRHSGKKAITIFAQGNPNPQIAEEGIKFVTNIFETYGWKIEDSIHYCGTSSNPDLEKFEELSLRAFKDGENLVG
>NZ_CP009933.1|WP_046065939.1|756442_756754_-|helix-turn-helix-transcriptional-regulator
MEDCYVKYAMDVIGGKWKLLIIWTMYQNGVIRFNELQRKVEGISSLMLSKNLKELEKDCLIVRHQYNEIPPRVEYELSELSEKLIVVLESLSNWGYEVYKYKK
>NZ_CP009933.1|WP_029160900.1|755248_755695_-|hypothetical-protein
MENMVTVSKSAVGISILFILYLVTFTINLPLIIDSKLSYFNFFATVFYLLAWTGYGIYLYNKKELAFFLYALAYWILVMVASITPNILFIIIFFTPLCGLRMFFVWLNYPANLAFENEPYAYLFISIIFVTLSVLAIILIKSNKKLNG
>NZ_CP009933.1|WP_029160899.1|754364_754835_+|GNAT-family-N-acetyltransferase
MDITIIKGNINYIDECEAALVNSELGIRYFDKKGSAREALMEGFDKGQVYVAIDDNNNCKGFIWVILNGAFHSFPYLHIIAVNQESRSKGIGKKLLKFFEDICFKDYNKLFLVVGDFNSAARILYEKIGYVQVGTIPDLYREGITENLMMKSREEN
>NZ_CP009933.1|WP_029160898.1|752655_753072_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MSENSKIININRLRAGISYNNLKDYLNMDNINEINRNKVKSYCRKLPVLIKTNGLLSALSFIKGKVKKENEKEKNEYFYIYSWIESWLNYIEYTDKSNLHNDIIEKIINANSASYRIYTKEAIEISVWYKRHAEAMIK
>NZ_CP009933.1|WP_029160897.1|751744_752638_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNKNINKIKGDSKEDQQYIKSKLIILKTMTPLHVGAGEGSGIADLPIQREAATNIPKVESSTFKGSLRCSCEKMLDEEHVKILFGNENNKTGEIAFTDLRLLFFPVKSSKNIFSLISCPYVLERFYDDIILYKTKLISGIKDLLTNMRMLDSNIAVTLNSDQENIYLEDYLFKTEKIHIEKLFSNIHGLEKMLSRIVIISNDNFIDFVNYYTEVITRNKIDAETGTAKNTALFTEEYVPEEAIFYGVISRFHDIFDKNKNKNVYEEFIKNFEFGEKLNKFRIGGNLSLGKGIVKIIN
>NZ_CP009933.1|WP_029160896.1|750246_751752_+|hypothetical-protein
MKLKEVFGNIDTYVMCSTLNQIVNYIPIKLIEENNKAKLETIKIINLTVKNKSEKNSIFKRFDNEKWDENLKACLQDINIKDVNIERNELDISNKLGFLIQNENHEEEGEDELNNNIYKEEKTILWNITGGQRTTIIAIQKYIRENKRYKDYIMYLEGNSNKIIIGNFKKKCGFNYEKLEEPYALKYLNLQTVFKLAGFEINNYDKVHNFLKENHNENDDKEYKELEVCNKIYKYYKNLESDFGEYFRKNLPRLNKIKNGIDMKQLIGEIEKSKFGKKFKEEFNDDQKKILENLKRKDKNKGSKADEQSKKDNESKNKQFGYILEYMAINSIKDCIKEDPKLSNYFIELCHSVNLKKLKNPLVQSKTSELCEFDLVLLSKSGQVVIFECKSGTMSSDVGKARQYTGYAAAGVYGKPILITPLLENHRRNICNAFKTNSDNSNLKAEKTDEICSESQKFDEAVLEAFRAAARANLDVWGMDEIHEKLNELYYEVLNVGEKNE
>NZ_CP009933.1|WP_029160895.1|749142_750243_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MRECYFKIKPSDTLFFRDGHPFLKRLNNYLESLNVPYPSVFYGAIFSALLRQGNFKDILNSIRNKDNEIETKLEKNFNITGVYLYDEIKNELYVKAPLDLFEDGNSKSFGLYKDGFLYSPTGANKFNRCDDKFISLSDLIKHYSSRNVNEITLYPSKYFFTNYSKIGIEIDRQKRTVKEEHLYRINMVEFSDKRFSYLLKCEIDLNEDEIKDDVIRLGGESKIASFTHTFKELSAIKELNEFYNNTIVYGDKIKLILTTPMIIEKSSQDKKDDFDNFINNNNIECVVTGKPEYIGGFDMARNHQKNIRKAIPAGSVLIMKNNKFRNVSINQILDDSCEKYINLKNIEDNFRGFGSIIIMPFRRGDD
>NZ_CP009933.1|WP_029160894.1|747391_749146_+|hypothetical-protein
MHNKLMLITIAGIQEYISNARKTADFFNGSKIITEFLKEIYEIVKHFEGYKDFDTILPCELDKHELDIPNYFIAKVSSNLENNELENKLRKILSKSLKNNFNKIYCYLNLDVYIVVVDFKSSYQVSYKSMYKKLDGYKNNRFRDYSLIYNIHENKNFDLQNCTICGKNRGKYISNTNIELIKTEQYYTSENKYIKDKEVLCEDCLRKRKYDYHKEYPSTVDIAVMEWIDEVNKNEKIQHYDKMIGSIVNNKRDCIANFYHLDYIYSHVEGNMCDEYVKALDEINNLDRKDQKCKVGNASRYYALIKADIDDLGKHFNGKYLKESIKNDDIIFEKFQKRLSKEILKLSEGVKEKLYSFKNNYETKKLDIYLGGDDLLFFCPLYKVFEIVKFIDERIKNINIEDNEKNLTISKSIVVAHDSVPLTQVINLSRKSLDIAKEKFEKQGKNALVISIINSSGIVRTSYLKNERKTVDELVNLINGFKNYISSGFISNIERQLFLLGENMSLEEYEVLMNVIMNVIERVASKQIKDNEIKCKENLKYLISKFVYVNSSNYFLDLKGYFNLLYILKKYSIEIINDINGGSI
>NZ_CP009933.1|WP_029160893.1|746490_747378_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MAKCKFYLNTDNLRFDTLERSNNVELDSNNINNNLILNKYIYEKIDFKNYKFNQSFQSLLEYIKEKQEHIVELYKDNYICCKESFSLNECSKLAIGLGEVSVREVSIKLDHIYGIPFIPASSLKGAFRSYLNEKYSKSNNKENIIITELFGTEDKKGKIIFFDAYPEKFQLGLDIMTPHYIKYYSNGEKPLDSLKPNPIKFPVVKEGAKFKFTILCEKNYFIELNKLSKEKFKFTTLYKKLKHMLDNLNRADLKKLGEKNKFKKSNIQKEFEQFLKKKPLGAKTSVGYGCFEKLK
>NZ_CP009933.1|WP_029160903.1|760802_763202_+|valine--tRNA-ligase
MLDKKYDPIKNEKKWQKFWQENRIYKYDFVSDKKTFSIDTPPPTISGSLHIGHIFSYTQAEIIARFHMMQGENVFYPFGFDDNGLPTERLIEKEENIRANSIPRSEFTEKCMVTTKKYEEDFKNLWMSMGFSVDWSLQYKTIGSTARKISQKAFLDMAKLRKAYIKESPVLWCTTCRTSIAQAELESADKETTFNYVTFICEDSELIIATTRPELLYSCVCLFINPEDERYLKYLGKRALVPLYNYEIPIFSDEKVSMDKGTGIVMCATFGDTTDVEWYKKYKLPYRKTIEENGKISEGVPFIGGLGTLNAREKIIQLLKDNNLLVKSETITHSVSIHERCGKAIEIIPSKQWYIDILSEKERYLKAADEINWYPASMKNKYITWVENLKWDWCISRQRYFGVPFPIWYCKKCGKPIFAKDEELPINPIETNPSDPCSCGSTDFIPETAVFDTWATSSLTPLINSKWNTDKDMTEELLPMGMRTQAHEIIRTWTFYTIVRSLFHTGKIPWKDIMLCGFVLAKKGEKISKSKNNAPSSPKELIKRHSADALRYWASSAKLGTDTMFSEEELKTSKRFLNKLWNASAFCIMQLEDYDEVKPIKLLPIDKWILEKIKILEKNSIENLNQYETGLAKHDIDEFFWNDFCDNYLEIIKDRLYKPEIHGKDERLSGQYTLYNALLEILKLYSIYVPHITEEVYQSFYRNFENCISIHKMQWNMKFDNNDENILQFGENVKKIIGEVRRYKSERNLSLKEKINILKISIPKSYEEYITQTLKDIKACTWAEDIEVKFSDKYDVEIL
>NZ_CP009933.1|WP_029160904.1|763376_763790_+|DUF3788-domain-containing-protein
MLDKIPTNEDLIALIGKPLFEVWTALCDMIEEKYDMEHLWNNGGKAWKYEYKYRRGGKTLCALYAKENCFGFMIIFGKNERAKFEEDKQNYSIEVQKVYDESKTYHDGKWMMFELTDTSLFGDMEKMLFIKRKSNKK
>NZ_CP009933.1|WP_029160905.1|763863_764313_+|hypothetical-protein
MKALSIDANDEEIKDLVIEWNELLAAEKYEEALSMFPSHKLEVEWTPELLEQAVYGYGVVGYTREEIKEMFGPEDYKVTSIFDNKEKNKIINSIEVSRDWNFKDENIIGMVHYDCVPLNGELSDLTARFHIRKIYDNNVTLEFLDLHVM
>NZ_CP009933.1|WP_046065940.1|764462_766145_+|AAA-family-ATPase
MKKISIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLLPRPRRFGKTINMSMLKYFFEKTDEDNSFLFKELNIYKCKDVMEKQGKYPVIYLTFKDEKYLSWKDCKSGMKFVIGNEFKRHKYLLESNIMDYEEKETYKDIMNLKADDIYYHKSLLSLSMYLSKYYNKKAVIIIDEYDVPIQGGYTGDYYEDIISFMRNFLSGGLKDNIYLEKAILTGILRVAKESIFSGLNNLSVNTIINKKYSSSFGFLENEVENILKYFKVESKLSEIKNWYNGYVFGENIIYNPWSILNYVKKWDEGFQPYWINTSSNDLVKSLITKGGQQLKSELEDLIQDKSITKEINENIEMKEIDKSTENVWSFLLLSGYLKTVKKTRKPDGRLVCELAIPNIEVKYLYNEIIMSWLKESVNNDEFNLMLNSLTNGDIENFEDIFADYVVKSFSYFDIGDESENFYHAFVLGILVALNNKYRVKSNRESGYGRYDIMIIPKDIGKNGIIIEFKKVNKRRKETLNTAAENALAQIKTMNYRQELIELRVKNIIELGIAFEGKDVFVLKSSDS
>NZ_CP009933.1|WP_046065941.1|768663_770328_+|AAA-family-ATPase
MKKIPIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLLPRPRRFGKTINMSMLKYFFEKTDEDNSFLFEKLNIYEHKDIMGKQGVYPVIYITFKDLKDKNIDKCYEKIKEILSEQYDKFQFILDTLSEVDKMYYNDILLGKASEAQYETSLKNLSKFLSKYYGVNVVILIDEYDVPIQSGYLNDYYEDIVEFMRNFLSGGVKDNEYLEKAVMTGILRVAKESIFSGLNNLSVYGILKNKYSSYFGFSEVEIEEIFKYYEVEFKLDEVKSWYNGYVFGENIIYNPWSILNYVNNYEEGLQPYWINTSSNDLVKSLITKGGQQLKSELEDLIQDKSITKDINENIEMKEIDKSTENAWSFLLLSGYLKTVKKTRKPDGRLVCELAIPNIEVKYLYNEIIMSWLKESVNNDEFNLMLNSLTNGDIENFEDIFADYVVKSFSYFDIGDESENFYHAFVLGILVALNNKYRVKSNRESGYGRYDIMIIPKDKNKIGIIMEFKKVDRDDEEDLKKAAEEGLKQIRERKYKQELIAREIKNIIEIGVAFEGKDVMVLT
>NZ_CP009933.1|WP_029159877.1|770461_771169_+|hypothetical-protein
MRIFECNFKVFLIKNISKEDVQEAISKLIDKSFYKNESLKDFHEENRIKGYCFNSLYPISINKDYGEGEIYNFQIRCVGEELKNHFVKFLTNEYTTHIKALTCESKSIFKKPIDRVYSITPAVIKISDLEKTEYWRNKHNEEDFFEYIRENSIKKYEVLTGEKVDRSLRIFTYERVDNRTPIATNFKGRRMLGDKITLTVDTGIEAQNIAYMLLGTGIGDMSPRGYGYMNYQYIK
>NZ_CP009933.1|WP_029159876.1|771438_772191_+|methyltransferase-domain-containing-protein
MDFRKVFDRIPKEFDEWRTRYCDELFADVIEYSKLGCSKTVLEIGPGTGQATEPILKTGCSYLAIELGENLAEYTKKKFSSYDNFQIVNDDFETYDFGYNQFDLVYSAATIQWIPEKIGFKKVYDILKNNGTFAMMLTRTDEKSANEALYLKIQKVYAEYFRPETEYTCHLNYNNIKKYGFTNIEYFEYHKTRVLNSDEYVLWISTHATHITLKEPYKSKFYAGIKEAILSFGNNIKLYDTIVLYLAIKA
>NZ_CP009933.1|WP_029159874.1|772748_773132_+|VOC-family-protein
MRIEHVAMYVNDLEKTKDFFISYLNAKSNDGYYNKNTGFRSYFLTFEDGARLEIMNKPNMEDIDKTLTRTGLIHVAFSVGSKEKVDKLTENLKKDGYKVISGPRTTGDGYYESCIIGIEGNQIEITV
>NZ_CP009933.1|WP_029159873.1|773229_773652_+|VOC-family-protein
MIQSVVHIALVVEDYDEAIEFYTKKLHFTLVEDTYQPEQEKRWVVVSPPGSNGTTILLARASKPEQKPFIGNQAGGRVFLFLGTDDFWRDYNEMIAIGIEFVREPKEQDYGIVAVFKDLYGNLWDLVQFNENHPMFKRVK
>NZ_CP009933.1|WP_029159872.1|773700_774219_+|GNAT-family-N-acetyltransferase
MIRVAAAYDILEIENIYNEILDYEEKTVSYTNWQKGFYPTVDYARSAIGNSTMFVGENEKGIYGCVVLNSIQPKEYGNISWGIKAEPSEIMVIHTLCIRPSESRKGKGKIMMDFIEKYAKEKGYKAIRLDTYEGNIPAGTLYPKLGYHYVGTTKFHFQNVIWENLKCFEKSL

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Crispr_ID: NZ_CP009933_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009933_3

766433-768564

TypeIII

III-B

Consensus_repeat	Method
GTTGAACTTTAACATAGGATGTATTTAAAT	PILER-CR
GTTGAACTTTAACATAGGATGTATTTAAAT	CRISPRCasFinder
GTTGAACTTTAACATAGGATGTATTTAAAT	CRT

32 spacers

cmr5gr11,cmr4gr7,cas6

The CRISPR arrays of NZ_CP009933_3

>merge|NZ_CP009933|3|766433-768564|PILER-CR,CRISPRCasFinder,CRT
GTTGAACTTTAACATAGGATGTATTTAAATTATGTATTTAAAATTAATTTTGTTGATTTAAGATTGGTTGAACTTTAACATAGGATGTATTTAAATATCATATAATCATCTTTATAAATCCATACTGTTTTGTTGAACTTTAACATAGGATGTATTTAAATTGGCATTTACCGTATCTACTTTTATTGGTTTATTAGTTGAACTTTAACATAGGATGTATTTAAATGTAGTCATTGCCTTAAAATGCATCAAATCAGTACTTGTTGAACTTTAACATAGGATGTATTTAAATTTTTAGATAACATATATTCTTTAAACTTGTCTTTAGGTTGAACTTTAACATAGGATGTATTTAAATCGTGAAAGCTCATTTATTTTAGTTTGAATATCCTTGTTGAACTTTAACATAGGATGTATTTAAATAATGCTTACAGAATTAAAACAGGTTTAAGTAATGAGTTGAACTTTAACATAGGATGTATTTAAATAATGAATAATGATGTTGAACCAATTATGTAAAAACCGTTGAACTTTAACATAGGATGTATTTAAATACAAAGCTTGAAGCCGAGGCAGAATGGATCGTAATGTTGAACTTTAACATAGGATGTATTTAAATACAAACCAGGCATTGCTGCCATTATTTCTTGTGTAGGTTGAACTTTAACATAGGATGTATTTAAATATTCCTAAAAGACTTGAAGCATACAACAGTTTTTCTGTTGAACTTTAACATAGGATGTATTTAAATACTTATCCCCTCCTTAGAGAGAGGATTAACCTCTCTGTTGAACTTTAACATAGGATGTATTTAAATGCTTCTAATGGAGCTACTGCTTTTAATTCTTGATCTGTTGAACTTTAACATAGGATGTATTTAAATGATAACTGTGCATATATTTGAGTAGTTGCTGGTGTGTTGAACTTTAACATAGGATGTATTTAAATAAGAAAAATGCCAATAGGATGCGTCTTAGAAATTAGGTTGAACTTTAACATAGGATGTATTTAAATGCATCTTTTCCTTTTGTGTAAGTAACAAAATATATTGTTGAACTTTAACATAGGATGTATTTAAATTACATATCTGAGTTAGGGTGTGCATGATATTCGTCTGTTGAACTTTAACATAGGATGTATTTAAATTTTTCTATAAAGTATGCAAATAAATCCAAACCTTTAGTTGAACTTTAACATAGGATGTATTTAAATGATGAATTTTTAGCAAGTACCATAAGTTCCTTTAGTTGAACTTTAACATAGGATGTATTTAAATAAAGTTTTATGAAAACTATTTCCATAATCGGCGTTCGTTGAACTTTAACATAGGATGTATTTAAATAGAATAATCCAAACTATGTTAAATTCATAAATAATCGTTGAACTTTAACATAGGATGTATTTAAATAAGAAAGAAAAGTTATATATATAAAAATTTTGATAGGTTGAACTTTAACATAGGATGTATTTAAATGTAGGAACACAAGTCTCTACAAATACTTTAGATATGTTGAACTTTAACATAGGATGTATTTAAATTTAACAAATGGTTGTTTCCCATTGTCTCTCCATGATGTTGAACTTTAACATAGGATGTATTTAAATAGATTTATGTCTTTAATCTTTCCTTCAAATTTATTGTTGAACTTTAACATAGGATGTATTTAAATGATGCAGGTGGTTTTATGATTCGCGAAGTCGGTATAGTTGAACTTTAACATAGGATGTATTTAAATTAGATTAGTTTGTGCTTTTGAAGATGCAGGATTTATGTTGAACTTTAACATAGGATGTATTTAAATGATGAGGATCCTGCACAAAAAATTACTGACAAATATGTTGAACTTTAACATAGGATGTATTTAAATTATAGAGAACGACAAGGTTGTTAGTAAGAGAGGTACAGTTGAACTTTAACATAGGATGTATTTAAATACAAATAATTAATTTGTACAAAGCTCTAGTAAAAGTTGAACTTTAACATAGGATGTATTTAAATTTCCCAAATCCACTTAATTTTGTTATTATTCCAGCAAGTTGAACTTTAACATAGGATGTATTTAAATTTGTTCCAAGTCAATACAAATTTATTCAAAATCGTTGTTGAACTTTAACATATGGCATATTAAAAA

>NZ_CP009933|3|4|766433-768498|PILER-CR
GTTGAACTTTAACATAGGATGTATTTAAAT	TATGTATTTAAAATTAATTTTGTTGATTTAAGATTG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATCATATAATCATCTTTATAAATCCATACTGTTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TGGCATTTACCGTATCTACTTTTATTGGTTTATTA
GTTGAACTTTAACATAGGATGTATTTAAAT	GTAGTCATTGCCTTAAAATGCATCAAATCAGTACTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTAGATAACATATATTCTTTAAACTTGTCTTTAG
GTTGAACTTTAACATAGGATGTATTTAAAT	CGTGAAAGCTCATTTATTTTAGTTTGAATATCCTT
GTTGAACTTTAACATAGGATGTATTTAAAT	AATGCTTACAGAATTAAAACAGGTTTAAGTAATGA
GTTGAACTTTAACATAGGATGTATTTAAAT	AATGAATAATGATGTTGAACCAATTATGTAAAAACC
GTTGAACTTTAACATAGGATGTATTTAAAT	ACAAAGCTTGAAGCCGAGGCAGAATGGATCGTAAT
GTTGAACTTTAACATAGGATGTATTTAAAT	ACAAACCAGGCATTGCTGCCATTATTTCTTGTGTAG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATTCCTAAAAGACTTGAAGCATACAACAGTTTTTCT
GTTGAACTTTAACATAGGATGTATTTAAAT	ACTTATCCCCTCCTTAGAGAGAGGATTAACCTCTCT
GTTGAACTTTAACATAGGATGTATTTAAAT	GCTTCTAATGGAGCTACTGCTTTTAATTCTTGATCT
GTTGAACTTTAACATAGGATGTATTTAAAT	GATAACTGTGCATATATTTGAGTAGTTGCTGGTGT
GTTGAACTTTAACATAGGATGTATTTAAAT	AAGAAAAATGCCAATAGGATGCGTCTTAGAAATTAG
GTTGAACTTTAACATAGGATGTATTTAAAT	GCATCTTTTCCTTTTGTGTAAGTAACAAAATATATT
GTTGAACTTTAACATAGGATGTATTTAAAT	TACATATCTGAGTTAGGGTGTGCATGATATTCGTCT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTCTATAAAGTATGCAAATAAATCCAAACCTTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	GATGAATTTTTAGCAAGTACCATAAGTTCCTTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	AAAGTTTTATGAAAACTATTTCCATAATCGGCGTTC
GTTGAACTTTAACATAGGATGTATTTAAAT	AGAATAATCCAAACTATGTTAAATTCATAAATAATC
GTTGAACTTTAACATAGGATGTATTTAAAT	AAGAAAGAAAAGTTATATATATAAAAATTTTGATAG
GTTGAACTTTAACATAGGATGTATTTAAAT	GTAGGAACACAAGTCTCTACAAATACTTTAGATAT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAACAAATGGTTGTTTCCCATTGTCTCTCCATGAT
GTTGAACTTTAACATAGGATGTATTTAAAT	AGATTTATGTCTTTAATCTTTCCTTCAAATTTATT
GTTGAACTTTAACATAGGATGTATTTAAAT	GATGCAGGTGGTTTTATGATTCGCGAAGTCGGTATA
GTTGAACTTTAACATAGGATGTATTTAAAT	TAGATTAGTTTGTGCTTTTGAAGATGCAGGATTTAT
GTTGAACTTTAACATAGGATGTATTTAAAT	GATGAGGATCCTGCACAAAAAATTACTGACAAATAT
GTTGAACTTTAACATAGGATGTATTTAAAT	TATAGAGAACGACAAGGTTGTTAGTAAGAGAGGTACA
GTTGAACTTTAACATAGGATGTATTTAAAT	ACAAATAATTAATTTGTACAAAGCTCTAGTAAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTCCCAAATCCACTTAATTTTGTTATTATTCCAGCAA
GTTGAACTTTAACATAGGATGTATTTAAAT

>NZ_CP009933|3|3|766433-768564|CRISPRCasFinder
GTTGAACTTTAACATAGGATGTATTTAAAT	TATGTATTTAAAATTAATTTTGTTGATTTAAGATTG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATCATATAATCATCTTTATAAATCCATACTGTTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TGGCATTTACCGTATCTACTTTTATTGGTTTATTA
GTTGAACTTTAACATAGGATGTATTTAAAT	GTAGTCATTGCCTTAAAATGCATCAAATCAGTACTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTAGATAACATATATTCTTTAAACTTGTCTTTAG
GTTGAACTTTAACATAGGATGTATTTAAAT	CGTGAAAGCTCATTTATTTTAGTTTGAATATCCTT
GTTGAACTTTAACATAGGATGTATTTAAAT	AATGCTTACAGAATTAAAACAGGTTTAAGTAATGA
GTTGAACTTTAACATAGGATGTATTTAAAT	AATGAATAATGATGTTGAACCAATTATGTAAAAACC
GTTGAACTTTAACATAGGATGTATTTAAAT	ACAAAGCTTGAAGCCGAGGCAGAATGGATCGTAAT
GTTGAACTTTAACATAGGATGTATTTAAAT	ACAAACCAGGCATTGCTGCCATTATTTCTTGTGTAG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATTCCTAAAAGACTTGAAGCATACAACAGTTTTTCT
GTTGAACTTTAACATAGGATGTATTTAAAT	ACTTATCCCCTCCTTAGAGAGAGGATTAACCTCTCT
GTTGAACTTTAACATAGGATGTATTTAAAT	GCTTCTAATGGAGCTACTGCTTTTAATTCTTGATCT
GTTGAACTTTAACATAGGATGTATTTAAAT	GATAACTGTGCATATATTTGAGTAGTTGCTGGTGT
GTTGAACTTTAACATAGGATGTATTTAAAT	AAGAAAAATGCCAATAGGATGCGTCTTAGAAATTAG
GTTGAACTTTAACATAGGATGTATTTAAAT	GCATCTTTTCCTTTTGTGTAAGTAACAAAATATATT
GTTGAACTTTAACATAGGATGTATTTAAAT	TACATATCTGAGTTAGGGTGTGCATGATATTCGTCT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTCTATAAAGTATGCAAATAAATCCAAACCTTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	GATGAATTTTTAGCAAGTACCATAAGTTCCTTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	AAAGTTTTATGAAAACTATTTCCATAATCGGCGTTC
GTTGAACTTTAACATAGGATGTATTTAAAT	AGAATAATCCAAACTATGTTAAATTCATAAATAATC
GTTGAACTTTAACATAGGATGTATTTAAAT	AAGAAAGAAAAGTTATATATATAAAAATTTTGATAG
GTTGAACTTTAACATAGGATGTATTTAAAT	GTAGGAACACAAGTCTCTACAAATACTTTAGATAT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAACAAATGGTTGTTTCCCATTGTCTCTCCATGAT
GTTGAACTTTAACATAGGATGTATTTAAAT	AGATTTATGTCTTTAATCTTTCCTTCAAATTTATT
GTTGAACTTTAACATAGGATGTATTTAAAT	GATGCAGGTGGTTTTATGATTCGCGAAGTCGGTATA
GTTGAACTTTAACATAGGATGTATTTAAAT	TAGATTAGTTTGTGCTTTTGAAGATGCAGGATTTAT
GTTGAACTTTAACATAGGATGTATTTAAAT	GATGAGGATCCTGCACAAAAAATTACTGACAAATAT
GTTGAACTTTAACATAGGATGTATTTAAAT	TATAGAGAACGACAAGGTTGTTAGTAAGAGAGGTACA
GTTGAACTTTAACATAGGATGTATTTAAAT	ACAAATAATTAATTTGTACAAAGCTCTAGTAAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTCCCAAATCCACTTAATTTTGTTATTATTCCAGCAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGTTCCAAGTCAATACAAATTTATTCAAAATCGTT
GTTGAACTTTAACATATGGCATATTAAAAA

>NZ_CP009933|3|3|766433-768564|CRT
GTTGAACTTTAACATAGGATGTATTTAAAT	TATGTATTTAAAATTAATTTTGTTGATTTAAGATTG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATCATATAATCATCTTTATAAATCCATACTGTTTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TGGCATTTACCGTATCTACTTTTATTGGTTTATTA
GTTGAACTTTAACATAGGATGTATTTAAAT	GTAGTCATTGCCTTAAAATGCATCAAATCAGTACTT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTAGATAACATATATTCTTTAAACTTGTCTTTAG
GTTGAACTTTAACATAGGATGTATTTAAAT	CGTGAAAGCTCATTTATTTTAGTTTGAATATCCTT
GTTGAACTTTAACATAGGATGTATTTAAAT	AATGCTTACAGAATTAAAACAGGTTTAAGTAATGA
GTTGAACTTTAACATAGGATGTATTTAAAT	AATGAATAATGATGTTGAACCAATTATGTAAAAACC
GTTGAACTTTAACATAGGATGTATTTAAAT	ACAAAGCTTGAAGCCGAGGCAGAATGGATCGTAAT
GTTGAACTTTAACATAGGATGTATTTAAAT	ACAAACCAGGCATTGCTGCCATTATTTCTTGTGTAG
GTTGAACTTTAACATAGGATGTATTTAAAT	ATTCCTAAAAGACTTGAAGCATACAACAGTTTTTCT
GTTGAACTTTAACATAGGATGTATTTAAAT	ACTTATCCCCTCCTTAGAGAGAGGATTAACCTCTCT
GTTGAACTTTAACATAGGATGTATTTAAAT	GCTTCTAATGGAGCTACTGCTTTTAATTCTTGATCT
GTTGAACTTTAACATAGGATGTATTTAAAT	GATAACTGTGCATATATTTGAGTAGTTGCTGGTGT
GTTGAACTTTAACATAGGATGTATTTAAAT	AAGAAAAATGCCAATAGGATGCGTCTTAGAAATTAG
GTTGAACTTTAACATAGGATGTATTTAAAT	GCATCTTTTCCTTTTGTGTAAGTAACAAAATATATT
GTTGAACTTTAACATAGGATGTATTTAAAT	TACATATCTGAGTTAGGGTGTGCATGATATTCGTCT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTTTCTATAAAGTATGCAAATAAATCCAAACCTTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	GATGAATTTTTAGCAAGTACCATAAGTTCCTTTA
GTTGAACTTTAACATAGGATGTATTTAAAT	AAAGTTTTATGAAAACTATTTCCATAATCGGCGTTC
GTTGAACTTTAACATAGGATGTATTTAAAT	AGAATAATCCAAACTATGTTAAATTCATAAATAATC
GTTGAACTTTAACATAGGATGTATTTAAAT	AAGAAAGAAAAGTTATATATATAAAAATTTTGATAG
GTTGAACTTTAACATAGGATGTATTTAAAT	GTAGGAACACAAGTCTCTACAAATACTTTAGATAT
GTTGAACTTTAACATAGGATGTATTTAAAT	TTAACAAATGGTTGTTTCCCATTGTCTCTCCATGAT
GTTGAACTTTAACATAGGATGTATTTAAAT	AGATTTATGTCTTTAATCTTTCCTTCAAATTTATT
GTTGAACTTTAACATAGGATGTATTTAAAT	GATGCAGGTGGTTTTATGATTCGCGAAGTCGGTATA
GTTGAACTTTAACATAGGATGTATTTAAAT	TAGATTAGTTTGTGCTTTTGAAGATGCAGGATTTAT
GTTGAACTTTAACATAGGATGTATTTAAAT	GATGAGGATCCTGCACAAAAAATTACTGACAAATAT
GTTGAACTTTAACATAGGATGTATTTAAAT	TATAGAGAACGACAAGGTTGTTAGTAAGAGAGGTACA
GTTGAACTTTAACATAGGATGTATTTAAAT	ACAAATAATTAATTTGTACAAAGCTCTAGTAAAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTCCCAAATCCACTTAATTTTGTTATTATTCCAGCAA
GTTGAACTTTAACATAGGATGTATTTAAAT	TTGTTCCAAGTCAATACAAATTTATTCAAAATCGTT
GTTGAACTTTAACATATGGCATATTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009933.1\|WP_029160905.1\|763863_764313_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009933.1\|WP_046065939.1\|756442_756754_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP009933.1\|WP_029160900.1\|755248_755695_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009933.1\|WP_029159870.1\|775224_775590_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009933.1\|WP_029159872.1\|773700_774219_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009933.1\|WP_029160903.1\|760802_763202_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237306
NZ_CP009933.1\|WP_029160902.1\|756874_757429_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP009933.1\|WP_029160898.1\|752655_753072_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP009933.1\|WP_029160899.1\|754364_754835_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP009933.1\|WP_029159873.1\|773229_773652_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319924
NZ_CP009933.1\|WP_029159877.1\|770461_771169_+\|hypothetical-protein	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP009933.1\|WP_029159871.1\|774221_774956_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100081
NZ_CP009933.1\|WP_029159876.1\|771438_772191_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|128898
NZ_CP009933.1\|WP_029160897.1\|751744_752638_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP009933.1\|WP_029160904.1\|763376_763790_+\|DUF3788-domain-containing-protein	unknown	unknown	gnl\|CDD\|378906
NZ_CP009933.1\|WP_029159874.1\|772748_773132_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319905
NZ_CP009933.1\|WP_046065941.1\|768663_770328_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
NZ_CP009933.1\|WP_029159869.1\|775861_776128_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|337191
NZ_CP009933.1\|WP_029159868.1\|776351_777110_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP009933.1\|WP_046065940.1\|764462_766145_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108

Protein	Function_ID	Function_description	E-value
NZ_CP009933.1\|WP_029159869.1\|775861_776128_+\|hypothetical-protein	gnl\|CDD\|337191	pfam08765, Mor, Mor transcription activator family. Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N terminal region of Mor is the dimerization region, and the C terminal contains a helix-turn-helix motif which binds DNA.	0.00250974
NZ_CP009933.1\|WP_046065939.1\|756442_756754_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.00674e-33
NZ_CP009933.1\|WP_029159874.1\|772748_773132_+\|VOC-family-protein	gnl\|CDD\|319905	cd07241, VOC_BsYyaH, vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YyaH. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	3.93742e-73
NZ_CP009933.1\|WP_029159872.1\|773700_774219_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.03542e-09
NZ_CP009933.1\|WP_029160903.1\|760802_763202_+\|valine--tRNA-ligase	gnl\|CDD\|237306	PRK13208, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP009933.1\|WP_029160902.1\|756874_757429_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	4.4025e-30
NZ_CP009933.1\|WP_029160898.1\|752655_753072_+\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.06452e-24
NZ_CP009933.1\|WP_029160899.1\|754364_754835_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.6391e-11
NZ_CP009933.1\|WP_029159873.1\|773229_773652_+\|VOC-family-protein	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.74894e-46
NZ_CP009933.1\|WP_029160904.1\|763376_763790_+\|DUF3788-domain-containing-protein	gnl\|CDD\|378906	pfam12663, DUF3788, Protein of unknown function (DUF3788). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length. This family may be distantly related to RelE proteins.	3.07961e-45
NZ_CP009933.1\|WP_029159871.1\|774221_774956_-\|site-2-protease-family-protein	gnl\|CDD\|100081	cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.	2.89586e-25
NZ_CP009933.1\|WP_029159876.1\|771438_772191_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|128898	smart00650, rADc, Ribosomal RNA adenine dimethylases.	1.39337e-17
NZ_CP009933.1\|WP_029160897.1\|751744_752638_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	8.03623e-59
NZ_CP009933.1\|WP_029159877.1\|770461_771169_+\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	6.92105e-07
NZ_CP009933.1\|WP_046065941.1\|768663_770328_+\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	1.73763e-72
NZ_CP009933.1\|WP_029159868.1\|776351_777110_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	5.60816e-19
NZ_CP009933.1\|WP_046065940.1\|764462_766145_+\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	1.42755e-69

>NZ_CP009933.1|WP_046065940.1|764462_766145_+|AAA-family-ATPase
MKKISIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLLPRPRRFGKTINMSMLKYFFEKTDEDNSFLFKELNIYKCKDVMEKQGKYPVIYLTFKDEKYLSWKDCKSGMKFVIGNEFKRHKYLLESNIMDYEEKETYKDIMNLKADDIYYHKSLLSLSMYLSKYYNKKAVIIIDEYDVPIQGGYTGDYYEDIISFMRNFLSGGLKDNIYLEKAILTGILRVAKESIFSGLNNLSVNTIINKKYSSSFGFLENEVENILKYFKVESKLSEIKNWYNGYVFGENIIYNPWSILNYVKKWDEGFQPYWINTSSNDLVKSLITKGGQQLKSELEDLIQDKSITKEINENIEMKEIDKSTENVWSFLLLSGYLKTVKKTRKPDGRLVCELAIPNIEVKYLYNEIIMSWLKESVNNDEFNLMLNSLTNGDIENFEDIFADYVVKSFSYFDIGDESENFYHAFVLGILVALNNKYRVKSNRESGYGRYDIMIIPKDIGKNGIIIEFKKVNKRRKETLNTAAENALAQIKTMNYRQELIELRVKNIIELGIAFEGKDVFVLKSSDS
>NZ_CP009933.1|WP_029160905.1|763863_764313_+|hypothetical-protein
MKALSIDANDEEIKDLVIEWNELLAAEKYEEALSMFPSHKLEVEWTPELLEQAVYGYGVVGYTREEIKEMFGPEDYKVTSIFDNKEKNKIINSIEVSRDWNFKDENIIGMVHYDCVPLNGELSDLTARFHIRKIYDNNVTLEFLDLHVM
>NZ_CP009933.1|WP_029160904.1|763376_763790_+|DUF3788-domain-containing-protein
MLDKIPTNEDLIALIGKPLFEVWTALCDMIEEKYDMEHLWNNGGKAWKYEYKYRRGGKTLCALYAKENCFGFMIIFGKNERAKFEEDKQNYSIEVQKVYDESKTYHDGKWMMFELTDTSLFGDMEKMLFIKRKSNKK
>NZ_CP009933.1|WP_029160903.1|760802_763202_+|valine--tRNA-ligase
MLDKKYDPIKNEKKWQKFWQENRIYKYDFVSDKKTFSIDTPPPTISGSLHIGHIFSYTQAEIIARFHMMQGENVFYPFGFDDNGLPTERLIEKEENIRANSIPRSEFTEKCMVTTKKYEEDFKNLWMSMGFSVDWSLQYKTIGSTARKISQKAFLDMAKLRKAYIKESPVLWCTTCRTSIAQAELESADKETTFNYVTFICEDSELIIATTRPELLYSCVCLFINPEDERYLKYLGKRALVPLYNYEIPIFSDEKVSMDKGTGIVMCATFGDTTDVEWYKKYKLPYRKTIEENGKISEGVPFIGGLGTLNAREKIIQLLKDNNLLVKSETITHSVSIHERCGKAIEIIPSKQWYIDILSEKERYLKAADEINWYPASMKNKYITWVENLKWDWCISRQRYFGVPFPIWYCKKCGKPIFAKDEELPINPIETNPSDPCSCGSTDFIPETAVFDTWATSSLTPLINSKWNTDKDMTEELLPMGMRTQAHEIIRTWTFYTIVRSLFHTGKIPWKDIMLCGFVLAKKGEKISKSKNNAPSSPKELIKRHSADALRYWASSAKLGTDTMFSEEELKTSKRFLNKLWNASAFCIMQLEDYDEVKPIKLLPIDKWILEKIKILEKNSIENLNQYETGLAKHDIDEFFWNDFCDNYLEIIKDRLYKPEIHGKDERLSGQYTLYNALLEILKLYSIYVPHITEEVYQSFYRNFENCISIHKMQWNMKFDNNDENILQFGENVKKIIGEVRRYKSERNLSLKEKINILKISIPKSYEEYITQTLKDIKACTWAEDIEVKFSDKYDVEIL
>NZ_CP009933.1|WP_029160902.1|756874_757429_+|flavodoxin-family-protein
MSKVVIFKGSPRKNGYTSRLLEQVAKGAKSKGAEVIEFDLNDPGIRGCQGCYYCRTHDGCAVNDYLQPMYKAIDEADAIVFGSPIYYYQITGQARVWLDRTFPMVGENFAPRHSGKKAITIFAQGNPNPQIAEEGIKFVTNIFETYGWKIEDSIHYCGTSSNPDLEKFEELSLRAFKDGENLVG
>NZ_CP009933.1|WP_046065939.1|756442_756754_-|helix-turn-helix-transcriptional-regulator
MEDCYVKYAMDVIGGKWKLLIIWTMYQNGVIRFNELQRKVEGISSLMLSKNLKELEKDCLIVRHQYNEIPPRVEYELSELSEKLIVVLESLSNWGYEVYKYKK
>NZ_CP009933.1|WP_029160900.1|755248_755695_-|hypothetical-protein
MENMVTVSKSAVGISILFILYLVTFTINLPLIIDSKLSYFNFFATVFYLLAWTGYGIYLYNKKELAFFLYALAYWILVMVASITPNILFIIIFFTPLCGLRMFFVWLNYPANLAFENEPYAYLFISIIFVTLSVLAIILIKSNKKLNG
>NZ_CP009933.1|WP_029160899.1|754364_754835_+|GNAT-family-N-acetyltransferase
MDITIIKGNINYIDECEAALVNSELGIRYFDKKGSAREALMEGFDKGQVYVAIDDNNNCKGFIWVILNGAFHSFPYLHIIAVNQESRSKGIGKKLLKFFEDICFKDYNKLFLVVGDFNSAARILYEKIGYVQVGTIPDLYREGITENLMMKSREEN
>NZ_CP009933.1|WP_029160898.1|752655_753072_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MSENSKIININRLRAGISYNNLKDYLNMDNINEINRNKVKSYCRKLPVLIKTNGLLSALSFIKGKVKKENEKEKNEYFYIYSWIESWLNYIEYTDKSNLHNDIIEKIINANSASYRIYTKEAIEISVWYKRHAEAMIK
>NZ_CP009933.1|WP_029160897.1|751744_752638_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNKNINKIKGDSKEDQQYIKSKLIILKTMTPLHVGAGEGSGIADLPIQREAATNIPKVESSTFKGSLRCSCEKMLDEEHVKILFGNENNKTGEIAFTDLRLLFFPVKSSKNIFSLISCPYVLERFYDDIILYKTKLISGIKDLLTNMRMLDSNIAVTLNSDQENIYLEDYLFKTEKIHIEKLFSNIHGLEKMLSRIVIISNDNFIDFVNYYTEVITRNKIDAETGTAKNTALFTEEYVPEEAIFYGVISRFHDIFDKNKNKNVYEEFIKNFEFGEKLNKFRIGGNLSLGKGIVKIIN
>NZ_CP009933.1|WP_046065941.1|768663_770328_+|AAA-family-ATPase
MKKIPIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLLPRPRRFGKTINMSMLKYFFEKTDEDNSFLFEKLNIYEHKDIMGKQGVYPVIYITFKDLKDKNIDKCYEKIKEILSEQYDKFQFILDTLSEVDKMYYNDILLGKASEAQYETSLKNLSKFLSKYYGVNVVILIDEYDVPIQSGYLNDYYEDIVEFMRNFLSGGVKDNEYLEKAVMTGILRVAKESIFSGLNNLSVYGILKNKYSSYFGFSEVEIEEIFKYYEVEFKLDEVKSWYNGYVFGENIIYNPWSILNYVNNYEEGLQPYWINTSSNDLVKSLITKGGQQLKSELEDLIQDKSITKDINENIEMKEIDKSTENAWSFLLLSGYLKTVKKTRKPDGRLVCELAIPNIEVKYLYNEIIMSWLKESVNNDEFNLMLNSLTNGDIENFEDIFADYVVKSFSYFDIGDESENFYHAFVLGILVALNNKYRVKSNRESGYGRYDIMIIPKDKNKIGIIMEFKKVDRDDEEDLKKAAEEGLKQIRERKYKQELIAREIKNIIEIGVAFEGKDVMVLT
>NZ_CP009933.1|WP_029159877.1|770461_771169_+|hypothetical-protein
MRIFECNFKVFLIKNISKEDVQEAISKLIDKSFYKNESLKDFHEENRIKGYCFNSLYPISINKDYGEGEIYNFQIRCVGEELKNHFVKFLTNEYTTHIKALTCESKSIFKKPIDRVYSITPAVIKISDLEKTEYWRNKHNEEDFFEYIRENSIKKYEVLTGEKVDRSLRIFTYERVDNRTPIATNFKGRRMLGDKITLTVDTGIEAQNIAYMLLGTGIGDMSPRGYGYMNYQYIK
>NZ_CP009933.1|WP_029159876.1|771438_772191_+|methyltransferase-domain-containing-protein
MDFRKVFDRIPKEFDEWRTRYCDELFADVIEYSKLGCSKTVLEIGPGTGQATEPILKTGCSYLAIELGENLAEYTKKKFSSYDNFQIVNDDFETYDFGYNQFDLVYSAATIQWIPEKIGFKKVYDILKNNGTFAMMLTRTDEKSANEALYLKIQKVYAEYFRPETEYTCHLNYNNIKKYGFTNIEYFEYHKTRVLNSDEYVLWISTHATHITLKEPYKSKFYAGIKEAILSFGNNIKLYDTIVLYLAIKA
>NZ_CP009933.1|WP_029159874.1|772748_773132_+|VOC-family-protein
MRIEHVAMYVNDLEKTKDFFISYLNAKSNDGYYNKNTGFRSYFLTFEDGARLEIMNKPNMEDIDKTLTRTGLIHVAFSVGSKEKVDKLTENLKKDGYKVISGPRTTGDGYYESCIIGIEGNQIEITV
>NZ_CP009933.1|WP_029159873.1|773229_773652_+|VOC-family-protein
MIQSVVHIALVVEDYDEAIEFYTKKLHFTLVEDTYQPEQEKRWVVVSPPGSNGTTILLARASKPEQKPFIGNQAGGRVFLFLGTDDFWRDYNEMIAIGIEFVREPKEQDYGIVAVFKDLYGNLWDLVQFNENHPMFKRVK
>NZ_CP009933.1|WP_029159872.1|773700_774219_+|GNAT-family-N-acetyltransferase
MIRVAAAYDILEIENIYNEILDYEEKTVSYTNWQKGFYPTVDYARSAIGNSTMFVGENEKGIYGCVVLNSIQPKEYGNISWGIKAEPSEIMVIHTLCIRPSESRKGKGKIMMDFIEKYAKEKGYKAIRLDTYEGNIPAGTLYPKLGYHYVGTTKFHFQNVIWENLKCFEKSL
>NZ_CP009933.1|WP_029159871.1|774221_774956_-|site-2-protease-family-protein
MENKNLIKKLNIKKILLNILMVSLIVLLLGFVINFKYSVGYLFVLIIHESGHYIMAKFLKLDVAFGGFTPFGAYIIHEDTKNCKENALIAMAGPLFGGILGLIYYIVYYVTGDYTFLALTFTSIILNLANLIPVSPLDGGQIVEAISPILCYMGFPFLIYLFISVNRLKSKLLLIFIMLAGIYQTYNFTVKHKTDSYYKLDKNSKIKFIIMYSILILFLAISAIYLYNLFDYKYIFKSISRFKT
>NZ_CP009933.1|WP_029159870.1|775224_775590_+|hypothetical-protein
MIVDDLLEKLNELMFKNIDFDEILDLRDSSIFDREWNRVYKVVEEEKKIKGYSEENKQLSDEYRKNAYFRVYNLCENDSLAAYISDDFGMICDSELVGYTDSWLEALIKTYAASKIPCGDI
>NZ_CP009933.1|WP_029159869.1|775861_776128_+|hypothetical-protein
MKYINAVEVLPKSLIDEIQRYVSGKIVYIPQPEGIKNNWGSKTGAKEKIENRNRKIRFEKENGKTIDELMIKYHLSYDTIKKIVYVKK
>NZ_CP009933.1|WP_029159868.1|776351_777110_+|class-I-SAM-dependent-methyltransferase
MDKNYTDINSKIISEWSEKGWKWGQPISHEIFEKARNNDWFVLLTPTKPVPKEWFGKMENAKVLGLASGGGQQMPIFTALGAKCTVLDYSEKQLLSEKEVAMRENYEIKLVRADMTKPLPFENEVFDLIFHPVSNCYIEDVIPVWKECYRVLKKGGILLAGLDNGINFIIDEKETEIIQKLPFNPLKDKELYKTSIKNDWGIQFSHTIEEQIGGQLQAGFLITDIYQDTNGEGRLHELNIPCFYATRAVKID

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Crispr_ID: NZ_CP009933_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009933_4

803483-803974

TypeI-B

III-B

Consensus_repeat	Method
GTTGAACTATAACATAGGATGTATTTAAAT	PILER-CR
GTTGAACTATAACATAGGATGTATTTAAAT	CRISPRCasFinder
GTTGAACTATAACATAGGATGTATTTAAAT	CRT

7 spacers

cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2

The CRISPR arrays of NZ_CP009933_4

>merge|NZ_CP009933|4|803483-803974|PILER-CR,CRISPRCasFinder,CRT
GTTGAACTATAACATAGGATGTATTTAAATCAATTACAGATACTATTATTTGGTGTTTTATCTTCGTTGAACTATAACATAGGATGTATTTAAATAGTATTAAAACTGTCTTTAGATAACATCTTATAACCGTTGAACTATAACATAGGATGTATTTAAATCAGAATCAATCCAGATGATTGCGGCAATGAAAATTTGTTGAACTATAACATAGGATGTATTTAAATTGTAGAAAGTATGTAGATAAATGGATAGAAACCGAGGTTGAACTATAACATAGGATGTATTTAAATGCTTCGCCAACACTACTTACAAGTTCATCATATTCTTGTTGAACTATAACATAGGATGTATTTAAATACAAATTTTAATTTTTCTAATTCCTTTATAATATTGTTGAACTATAACATAGGATGTATTTAAATTTGTTAAGTTGTATCCCATCTATATATAAATCATCTGGTTGAACTATAACATAGGATGTATTTAAAT

>NZ_CP009933|4|5|803483-803974|PILER-CR
GTTGAACTATAACATAGGATGTATTTAAAT	CAATTACAGATACTATTATTTGGTGTTTTATCTTC
GTTGAACTATAACATAGGATGTATTTAAAT	AGTATTAAAACTGTCTTTAGATAACATCTTATAACC
GTTGAACTATAACATAGGATGTATTTAAAT	CAGAATCAATCCAGATGATTGCGGCAATGAAAATTT
GTTGAACTATAACATAGGATGTATTTAAAT	TGTAGAAAGTATGTAGATAAATGGATAGAAACCGAG
GTTGAACTATAACATAGGATGTATTTAAAT	GCTTCGCCAACACTACTTACAAGTTCATCATATTCTT
GTTGAACTATAACATAGGATGTATTTAAAT	ACAAATTTTAATTTTTCTAATTCCTTTATAATATT
GTTGAACTATAACATAGGATGTATTTAAAT	TTGTTAAGTTGTATCCCATCTATATATAAATCATCTG
GTTGAACTATAACATAGGATGTATTTAAAT

>NZ_CP009933|4|4|803483-803974|CRISPRCasFinder
GTTGAACTATAACATAGGATGTATTTAAAT	CAATTACAGATACTATTATTTGGTGTTTTATCTTC
GTTGAACTATAACATAGGATGTATTTAAAT	AGTATTAAAACTGTCTTTAGATAACATCTTATAACC
GTTGAACTATAACATAGGATGTATTTAAAT	CAGAATCAATCCAGATGATTGCGGCAATGAAAATTT
GTTGAACTATAACATAGGATGTATTTAAAT	TGTAGAAAGTATGTAGATAAATGGATAGAAACCGAG
GTTGAACTATAACATAGGATGTATTTAAAT	GCTTCGCCAACACTACTTACAAGTTCATCATATTCTT
GTTGAACTATAACATAGGATGTATTTAAAT	ACAAATTTTAATTTTTCTAATTCCTTTATAATATT
GTTGAACTATAACATAGGATGTATTTAAAT	TTGTTAAGTTGTATCCCATCTATATATAAATCATCTG
GTTGAACTATAACATAGGATGTATTTAAAT

>NZ_CP009933|4|4|803483-803974|CRT
GTTGAACTATAACATAGGATGTATTTAAAT	CAATTACAGATACTATTATTTGGTGTTTTATCTTC
GTTGAACTATAACATAGGATGTATTTAAAT	AGTATTAAAACTGTCTTTAGATAACATCTTATAACC
GTTGAACTATAACATAGGATGTATTTAAAT	CAGAATCAATCCAGATGATTGCGGCAATGAAAATTT
GTTGAACTATAACATAGGATGTATTTAAAT	TGTAGAAAGTATGTAGATAAATGGATAGAAACCGAG
GTTGAACTATAACATAGGATGTATTTAAAT	GCTTCGCCAACACTACTTACAAGTTCATCATATTCTT
GTTGAACTATAACATAGGATGTATTTAAAT	ACAAATTTTAATTTTTCTAATTCCTTTATAATATT
GTTGAACTATAACATAGGATGTATTTAAAT	TTGTTAAGTTGTATCCCATCTATATATAAATCATCTG
GTTGAACTATAACATAGGATGTATTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009933.1\|WP_029159832.1\|813210_813498_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP009933.1\|WP_029159841.1\|798289_799111_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP009933.1\|WP_082085039.1\|803120_803273_+\|DUF4351-domain-containing-protein	unknown	unknown	gnl\|CDD\|316753
NZ_CP009933.1\|WP_029159834.1\|811446_811941_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP009933.1\|WP_029159842.1\|797720_797900_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009933.1\|WP_029159839.1\|804639_805347_+\|hypothetical-protein	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP009933.1\|WP_029159840.1\|799251_799926_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP009933.1\|WP_029159844.1\|795566_796247_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP009933.1\|WP_029159835.1\|808800_811398_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP009933.1\|WP_029159829.1\|819606_821604_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239241
NZ_CP009933.1\|WP_029159847.1\|792640_793459_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP009933.1\|WP_029159830.1\|817211_819089_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP009933.1\|WP_029159846.1\|793976_794741_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP009933.1\|WP_029159845.1\|794834_795419_+\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153233
NZ_CP009933.1\|WP_029159838.1\|805363_807130_+\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
NZ_CP009933.1\|WP_029159843.1\|796251_796914_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224582
NZ_CP009933.1\|WP_029159833.1\|812207_813209_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP009933.1\|WP_029159836.1\|808058_808787_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP009933.1\|WP_029159837.1\|807122_808055_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP009933.1\|WP_029954479.1\|800843_802235_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182694

Protein	Function_ID	Function_description	E-value
NZ_CP009933.1\|WP_029159832.1\|813210_813498_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.82873e-23
NZ_CP009933.1\|WP_029159841.1\|798289_799111_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.82186e-21
NZ_CP009933.1\|WP_082085039.1\|803120_803273_+\|DUF4351-domain-containing-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	2.63004e-07
NZ_CP009933.1\|WP_029159834.1\|811446_811941_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.62376e-51
NZ_CP009933.1\|WP_029159839.1\|804639_805347_+\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.98138e-06
NZ_CP009933.1\|WP_029159840.1\|799251_799926_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	7.27808e-24
NZ_CP009933.1\|WP_029159844.1\|795566_796247_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	8.48165e-65
NZ_CP009933.1\|WP_029159835.1\|808800_811398_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.05246e-26
NZ_CP009933.1\|WP_029159829.1\|819606_821604_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|239241	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.	0
NZ_CP009933.1\|WP_029159847.1\|792640_793459_+\|chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	9.39913e-30
NZ_CP009933.1\|WP_029159830.1\|817211_819089_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.5342e-26
NZ_CP009933.1\|WP_029159846.1\|793976_794741_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.16262e-16
NZ_CP009933.1\|WP_029159845.1\|794834_795419_+\|DJ-1/PfpI-family-protein	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	5.11299e-63
NZ_CP009933.1\|WP_029159838.1\|805363_807130_+\|hypothetical-protein	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	6.38362e-19
NZ_CP009933.1\|WP_029159843.1\|796251_796914_+\|hypothetical-protein	gnl\|CDD\|224582	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism].	0.000569909
NZ_CP009933.1\|WP_029159833.1\|812207_813209_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.4286e-135
NZ_CP009933.1\|WP_029159836.1\|808058_808787_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.0626e-43
NZ_CP009933.1\|WP_029159837.1\|807122_808055_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	3.29418e-45
NZ_CP009933.1\|WP_029954479.1\|800843_802235_-\|amino-acid-permease	gnl\|CDD\|182694	PRK10746, PRK10746, putative transport protein YifK; Provisional.	0

>NZ_CP009933.1|WP_082085039.1|803120_803273_+|DUF4351-domain-containing-protein
MVIKLLNKKFKNVDGDVIERIKVLSSDSLNLIIEDILDIESIEDLKKVWD
>NZ_CP009933.1|WP_029954479.1|800843_802235_-|amino-acid-permease
MEKKELTRGLKARHIELIALGGTIGVGLFMGSASTIKWAGPSVLLAYAVAGIAMYIVMRIMGEMLYLEPLTGSFATYANKYISPWAGYMTAWCYWFMWIAVGMSEVTAIGIYMNYWFPALPAWIPALIGVAILAAANMTSVKFYGEFEFWFSLIKIITIIVMLLVGFGLIFFGIGNHGTAIGLTNLTANGGFFAGGLKGWLFALCLVTASYQGVELIGITAGEAQDPKNTLRKATKNIIWRILIFYIGAIFVIVTIYPWNQISALGSPFVLTFAKVGVSAAAGIINFVVLTAAMSGCNSGIYSCGRMLYTLSKNGQAPKFLGKVNKEGVPVNALKTTLACLLCCVILNYLCPNSKLFVYIYSASVLPGMIPWVVLCISQIKFRKEHAAEMETHPFKSRLFPYANYVVVVYLCLVLMGMCFNSDTQIPLLVGAIFCAIVTIAYFAFGINKKTAPEIKEFKNENL
>NZ_CP009933.1|WP_029159840.1|799251_799926_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MEDNKKLSKKKAYFVPIIIMIFMGIILFLPAGTLKFWQAWIYWIGFSAVTFFIAAYFLKKSPELLSRRMKYGEKNTTKKAPAIFNLFFIGYFIPGIDFRFHWSNVPVWIVIASNIIVLLGYIFIIFVFNENSYAFTIIQVEKKQQVISTGPYSIVRHPMYLGMLMLLLFTPFALGSYWAVIPFLLSVPMNVFRIKSEEEVLLKELPGYKDYCLRTRYRLIPLIW
>NZ_CP009933.1|WP_029159841.1|798289_799111_+|MerR-family-transcriptional-regulator
MENKIKIGDFARITGCTVKTIIYYHKIGLLQEPKRSSGGYRLYGSVELTRMKLIKYLKSLGFDLKKIKEVLGNACESKTLKEALKSLRIELVKEGEKIQERVGKIDILLEKDDINLDNDTLDSSSFQMITDILGTDQIDKYVETCPELFEQQRKIFHIMDDFQLQNNYSENFRALAEYFKAHPEEYQISLNFGTRLAKLDKLSEDDPEIEALARESAEFIKRISSLKELLYDKTGLTKSMESLYNDMLKDVLSPARMKYKQLFQKYLNYKLKK
>NZ_CP009933.1|WP_029159842.1|797720_797900_+|hypothetical-protein
MKIWQQRLIVIPIVPIIWGAFVDLKFGKIASFITRVIIVTLIGLFLSYAYERIKRRIQL
>NZ_CP009933.1|WP_029159843.1|796251_796914_+|hypothetical-protein
MSEILYIMQKEYWEIKSMGKKELIMIFIVSFLPLILLFKCPHSLLPKNTLAIFFPLVVSFAISGQLGFYSILKEKKEKTLEVLLCSKVSIFSIVLGKILLPAIIGYVLSIFSIVCLKFGLLFINPADRVKINDLVLLFSIIISYAGCSVSMLSTLLFPDEKVAPIISGIFMFVLAIIIYEISKIFGFSIFITFCCLISICIISTFIDVWILKNRKSFIFN
>NZ_CP009933.1|WP_029159844.1|795566_796247_+|ABC-transporter-ATP-binding-protein
MITYKNISFQYSKNNVVINNLNLHVKERDIHGILGHNGAGKTTLFRLTLGLLKPQKGKILLGNNDISYMPTDNGLYENLTAFQNIEFRAKIFKVSQDVFNTEANLLLKQLHIFKRSNELVLKWSTGMKKRLALACALIANPKILILDEPTNGIDPESLNIVVNMLKKINQNGVTILLSSQDLNFISKACNYISIIQSGNLVYENSINVNTNIEDIYLKYTNSNVEE
>NZ_CP009933.1|WP_029159845.1|794834_795419_+|DJ-1/PfpI-family-protein
MNINILLFNNFETLDIFGPVEILGQIEEYQIHYYSESGGIITNAQKLKIVTEPINSADESGILVIPGGMGTRELVNNTCFLDKLKLIAEKSTYCLSICTGSAVLAKCGVLKNRKATSNKQALEWVKSVSDQVNWIEKARWVADGKYYTSSGISAGIDMTLGFVSDIFGRDKAVKIANDIEYIWNDDCTDDIFAR
>NZ_CP009933.1|WP_029159846.1|793976_794741_+|alpha/beta-fold-hydrolase
MSYFNFDNKRVYYTEFGNGTPLLLLHGNTASSNMFAEIAEKYKKNFKVILIDFLGHGKSDRLDKFPADLWFYEAKQTIALLREKQYSKVNIIGSSGGALVAINVALEASELVNKVIADSFEGEKPLKAFTENIEVDRENSKQNENAKAFYLYMHGLDWEQVVDNDTSAIIRHEKEIGKFFHKDLQSFKSDILLTGSKEDEFIGTISPNYFEKVYGELVSKIGHGKINLFETGGHPAMLTNQDSFYQLSMEFFGQ
>NZ_CP009933.1|WP_029159847.1|792640_793459_+|chemotaxis-protein
MEKTLESFLEIMPVLKDVLQEDLAVAVADMNSFLYYRAGDTIDVKIKVGQKLTPDEPLYRTIQNGKIYSEIVPKEVFGVTFKSVSYPVKNSQGKVIGGVAVGKSLVKQSKVEEVSENIFSSLQQTNSSIKEVASNSQNLSLSMNSIVKSTKSTEQNIKDTDGILNLIASISSQSNLLALNAAIEAARAGEAGRGFSVVADEMRKLSQMSGQSANKVSQILLEMRKSIDEVIKEINNTGSIAESQASATEEIVAELKEITSNFEVLTNTAKIL
>NZ_CP009933.1|WP_029159839.1|804639_805347_+|hypothetical-protein
MHIFECNFKVVLIKDISKEDVQETISKLIDKSFYKNESLKDFHEENRIKGYCFNSLYPISINKDYSEGEIYNFQIRCVGEELKNHFVKFLTNEYTTSIKALTCESKSIFKKPLDRIYSITPAVIKILDVEKTEYWRNKHNEEDFFEYIRENSIKKYEVLTGEKVDRSLRIFTYERIDNRTPIATSFKCRRMLGDKITLTVDTGIEAQNIAYMLLGTGVGDMSPRGYGYMNYQYIK
>NZ_CP009933.1|WP_029159838.1|805363_807130_+|hypothetical-protein
MISEISEVFKKQYEEKGEGLIIDNYVLAPGQYAMFTLEDTADTIDIFDVNKKTDTEEENYKNFAKLDYMSGLISMNKPVDPNKIIHSNNMYAFYVKKDNLDAEKGKLKDETIDAYYSILKNPKIKYKNKPKSLELYLKAEEKYGKSDEELIDKINLWIKENIYKIALKLKLDKTYLKLFYKTNSENYEKESEKYILPNIYNSTDYNVKIKEKVYGLPDFNMGLNSKKPYLENKTRKTKLPLLVPADKIVIQKKLFSYLLNCSAQGKNYVYVGNEIEEMTPREGRNKNFQGHFLRVNKGKEVEIVDSDVVTSYRYKLKRVVKLSRIIDKGIGKDFLPLKKSFSNLNELKGYIDEIFFSNYLNNNYFTEPKEIRLDDSKLKEIFIKYRYGFYTWFYKGEDSLVSKFWNKVTRELLCNSMLRGNVNKAINQFNLRYALLDYFKNENGGDNMASCVKNMRKSLDEKINIKVDSDYKVEINDDKEYYFCVGQLMQYFYALNKSGTKNYSFIRPILSAKNDDFIKEQLRRLFIKYSYAIKGSLKFSNMYYMVEAYAPEGDVDQDILIAGFLCPNLILKKSDKNNGEIGEDIKHE
>NZ_CP009933.1|WP_029159837.1|807122_808055_+|type-I-CRISPR-associated-protein-Cas7
MNRVYGVIGIKAVMANWNADFSGYPKTISDGTVFGSDKALKYSMKKYWETNSEKVLYIKSFKVDKDKKMKPKSLEERYNEIFNTTLTKKDETTVILKNLFSAVDVKAFGATFAEEGNNIGLTGAVQIGQGFNVYEDSNAEEQQILSPFRSDKKAKEGEEAAEANQSTLGTKIVSNEAHYLYPFYINPISYKNYEEMGVTEGYTQEDYNKFKEAALVGATALNTNSKAGCENEFAMFIETEEDIYLPNLTQFMDFQKVNKNDTLELNLDDLLDGVKDKIKGMEIYYNNYKLKLNNIPKGAKTFNIFTRKEV
>NZ_CP009933.1|WP_029159836.1|808058_808787_+|type-I-B-CRISPR-associated-protein-Cas5
MQAVRFKLSGRTAFFKKPDVNTYYYFTYGNIHKVALLGIMGSIVGLDGYNKQSEVYPKFYEKLKGAKTAVVTCNKQGYITKKIQTFNNSVGYASLEQGGNLIVKEQWLQDPCWIIYVKIDETTEEFAELLLNNKAKFIPYLGKNDHFADITDVKKVDLKEVKEVSHIQSLFKTGDFKIDTYIDEEEEDFNPWRYRECLPVGLDETLNQYEFEDFTATNLSIKNTNNITLYKDNELNKVVYLF
>NZ_CP009933.1|WP_029159835.1|808800_811398_+|CRISPR-associated-helicase/endonuclease-Cas3
MYFEHVDVFKIEDHVSNLENMYAHRDTENKNPKEHLKCHIERTIEYFYFICREKNLDNIFINLEKSLLKGKDIVLVKLWKEMLINTVYMHDVGKINPAFQYDIMLNDFYKDNESRDSKHSLLSSYIYVSYFNKKIKNLDIEKLDKSFLRYFMYLNAYIISKHHGYLSDFEGFGTYLSDETEDYFKEDDFPDLNMDTLKSSIIANFFYPDKIKDIKEYVENEDNNFSIYIYTKILFSILTASDYYATAEYMDGHKVVDMGTITKELKERFCSEFNNYEITKSIRNYEKNPVIDGNYTSINELRSEITLESEKNYLKNKDKNIYYLEAPTGAGKTITSINLANLILKSEENINKLFYVFPFNTLVEQTEKGLKDIFKSDITQNISVINSLTPIKTVDENEDYKDFRSKENNRKIDYKKSLLNRIFLNYPFIITTHVNLFNYLFGTSREEGFPLIHICNSIVIIDEIQSYKNGIWKEIINFLNAYAEILNIKVIIMSATLPRLNKLVEGEDNNFVYLIEDRKHYFGNPLFKNRVQFEMLNLGEDPESEGFELLLKDILMESKSNNKILIEFIFKKHADKFFDYMNENFISDSGYEIKVITSDDNKIDREKIIKLAKGKKNRVIIISTQVIEAGVDIDMDLGYKNISILDAEEQFMGRINRSCLNSGRVKFFQIDNCRLLYKDDVRKEKELTLINPEIHGILRNKDFEGYYDRVINKIEKKKTEINDKGYLSFIKQLYNLNFEKIKDYMKLIDDEMNQNKYTIFLSRKIEIKDEKSGNTDILDGSILWKDYKKLLMDSKMDYSERRVKLSEKNAQLSYFIYKVKKLPSQYNEILGDIYYIEDGEKYVVNGRFNQEIFMGETSDEANLIL
>NZ_CP009933.1|WP_029159834.1|811446_811941_+|CRISPR-associated-protein-Cas4
MKITGTIINYYIHCKRQCWLHGHRINLEDNSEEVRIGKVLHELAAEGKKNAEISIENIKIDKITDEYLVEMKKSDADVEAVKWQVLLYLKILKEKGIEKKGKIQFEEKKKQDKKIVYIDLTEENEQALQEFLNSINNLLEQENPPKEELKKGCKKCAYYEYCFI
>NZ_CP009933.1|WP_029159833.1|812207_813209_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGSGTRFIMSQGDITRKDNSICFRKGNKNTYMPVEATKELYLLNEVSLNTKFLDFAAKAGIVIHFFNYYGYYSGTFYPKEYLISGNLTIKQSEAFIKNRIHIAKAFVKGIGINIYEVVYHYYKHDKKETKEFLDWIKKDFMDILDKTNDIKQVLFIEGQVWMKFYDNFKYFLPEDFLMNKRVKRPPDNPMNAMISFGNSILYARTISQIYHTHLNQSISFLHEPSEGRFSLSLDLSEVFKPAIVYKTIFELVNNKKIQVSKHFDRKLNYCLLNEAGKKVFIPALEERFNSVFEHAKLKRKVSYEAAIKYDGYKLIKYIVEGKDFVPFSLKEMM
>NZ_CP009933.1|WP_029159832.1|813210_813498_+|CRISPR-associated-endonuclease-Cas2
MGKIENCNYAFVFYDINEKRVQRVFKICKKYFKHHQKSVFRGSITPSNLIKLRAELKKVIDESEDFVSIIKLMNEKSFSEETLGVNLENSESLIL
>NZ_CP009933.1|WP_029159830.1|817211_819089_+|APC-family-permease
MLKKFLDVLFGEPLANEQGKHEKYNIPFGLAIMASDAISSVAYGAQEILFVLIVLGASAYQWLTWTSFMIIGLLIILTIAYIQIIKAYPQGGGAYKVAKENIGDKAGLSAGAGLIISYILTVAVSASAGADAIISAFVGLAEYKVIFVVAIIVVLTILNLRGISESSKIFAIPTYIFIFSMIFMIVYGLFKYFVLNIHPQPMFSVPAGTTENLSIFLILRAFSSGCSALTGVEAVSNSVPNFQEPSQKSAKTVMILLAALIFFIFGGTSVLAIFYTAVPIANGPTVVSQIAFGVFHNGIMYYVIQFSTAVILLMACNTAYTGFPMLMYIVGKDGFAPRQFTIRGKRLSFSFGICALSFIACVLVTIFKADTHRLIPLYAIGVFISFTLGQFGMVNHWRKERGKGWIKRAIINGCGAAVTLFTTIIILVEKFSEGAFIVAILIPMIILVQMRIKHHYNKVANGLSISQINLKKLNLRIKYTHTVIVPIASLNKAVIGALKYAQSISDNVIALNISTDMEAMERLKQRWSELDTDITLISKYSPYRAVITPLLQNIVSIADKAGEDEKVTVIVPQFITHGHFGKVLHNHTSFFIRETLLKNNNIIVSTFPYHLSDEEIAAANKKIKK
>NZ_CP009933.1|WP_029159829.1|819606_821604_+|FAD-dependent-oxidoreductase
MSYKYQKLFESVKIGSIEIKNRFAMAPMGPQGLGDEEGAFNQRGVDYYVARARGGTGLIITGVTFVENEVEHHEMPGVPCSTYNPVHFVRTASEMTERIHAYDSKVFLQMSAGFGRVAPPANENVPPIAPSPIPNRWVDVTCREISKDEIHHIVEMFGEGAVNAKRAGFDGVQIHAVHEGYLLDQFAISFFNHRTDEYGGCLENRLRFAREVVEEIKKRCGDDYPVILRYSPKSFIKDWREGALPGEEFEEKGKDIPEGIEAGKLLVQYGYDALDVDVGCYDAWWWNHPPMYQKKGLYIPYAKIMKEAVDVPIICAGRMDNPDLALSALEDGACDMIGLGRPLLADPDYVNKLRLGKTALIRPCLSCHEGCLGRMVKNGSLNCAVNPEACREGVNFLIPALKSKKVLIVGGGVAGCEAARVLKLRGHEPVIYEKTARLGGNLIPGGVPDFKEDDRALIKWYENSLKDLKVDIKLNTEVTSEIVKNSKVDVVIIATGSKPKVFNLGDNSKVFTAADVLCGKKQAGDKVVVLGGGLVGCETALYLKKMGKEVTIVEAMDSLLALNGPSCFANFGMLMALIPYNHINVLTSSKVVKTTDKGVLVNTEGSCEREIEADSVVLAVGYNSNKELYDSLKYEVQDIRLLGDARKVSNIMYAVWDAYEVASKL

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Crispr_ID: NZ_CP009933_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009933_5

813678-814564

TypeI-B

III-B

Consensus_repeat	Method
GTTGAACTATAACATAGGATGTATTTAAAT	PILER-CR
GTTGAACTATAACATAGGATGTATTTAAAT	CRISPRCasFinder
GTTGAACTATAACATAGGATGTATTTAAAT	CRT

13 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NZ_CP009933_5

>merge|NZ_CP009933|5|813678-814564|PILER-CR,CRISPRCasFinder,CRT
GTTGAACTATAACATAGGATGTATTTAAATTTCCATCTGATTTGATAACCGCTATGTCCATGATTGTTGAACTATAACATAGGATGTATTTAAATCAGAACAAGTCTTATAAAAATGATTACTATAGCAGGTTGAACTATAACATAGGATGTATTTAAATTCTATAAGTAATATAGCATTGCTTAGTACTTCCATAGTTGAACTATAACATAGGATGTATTTAAATAAATAATGAATTTGGTGTTGGAAGAATAATTTTAGATGTTGAACTATAACATAGGATGTATTTAAATAATACCATTAGCAGACATACAAGCAAGAAGATTAACGTTGAACTATAACATAGGATGTATTTAAATTCCCTGTTGCAACATGATAGGAAAGCGAATATACCCGTTGAACTATAACATAGGATGTATTTAAATCTTCCTTTTATTATTTTATATTTCTATCCATTTAGCGTTGAACTATAACATAGGATGTATTTAAATTGTAACCATATAATTATTTTAAATTCTTTATCATTTGTTGAACTATAACATAGGATGTATTTAAATGATGGTGAAGTAACAAATAAAAGATTTGTTGGTGGAAGTTGAACTATAACATAGGATGTATTTAAATCGAATAAAATTCCCAAAATGAAAGTTTGAAACCTGTTGAACTATAACATAGGATGTATTTAAATCAAATCAGTTTTAAATGTTTTCCTAATATCCACAATCGTTGAACTATAACATAGGATGTATTTAAATGAACTTGGATCATCAGGAGATATAATTCTTTGTGAGTTGAACTATAACATAGGATGTATTTAAATCAGATGATGAACGATTTAAATGTACTTATGATAGCAGGTTGAACTATAACATAGGATGTATTTAAAT

>NZ_CP009933|5|6|813678-814564|PILER-CR
GTTGAACTATAACATAGGATGTATTTAAAT	TTCCATCTGATTTGATAACCGCTATGTCCATGATT
GTTGAACTATAACATAGGATGTATTTAAAT	CAGAACAAGTCTTATAAAAATGATTACTATAGCAG
GTTGAACTATAACATAGGATGTATTTAAAT	TCTATAAGTAATATAGCATTGCTTAGTACTTCCATA
GTTGAACTATAACATAGGATGTATTTAAAT	AAATAATGAATTTGGTGTTGGAAGAATAATTTTAGAT
GTTGAACTATAACATAGGATGTATTTAAAT	AATACCATTAGCAGACATACAAGCAAGAAGATTAAC
GTTGAACTATAACATAGGATGTATTTAAAT	TCCCTGTTGCAACATGATAGGAAAGCGAATATACCC
GTTGAACTATAACATAGGATGTATTTAAAT	CTTCCTTTTATTATTTTATATTTCTATCCATTTAGC
GTTGAACTATAACATAGGATGTATTTAAAT	TGTAACCATATAATTATTTTAAATTCTTTATCATTT
GTTGAACTATAACATAGGATGTATTTAAAT	GATGGTGAAGTAACAAATAAAAGATTTGTTGGTGGAA
GTTGAACTATAACATAGGATGTATTTAAAT	CGAATAAAATTCCCAAAATGAAAGTTTGAAACCT
GTTGAACTATAACATAGGATGTATTTAAAT	CAAATCAGTTTTAAATGTTTTCCTAATATCCACAATC
GTTGAACTATAACATAGGATGTATTTAAAT	GAACTTGGATCATCAGGAGATATAATTCTTTGTGA
GTTGAACTATAACATAGGATGTATTTAAAT	CAGATGATGAACGATTTAAATGTACTTATGATAGCAG
GTTGAACTATAACATAGGATGTATTTAAAT

>NZ_CP009933|5|5|813678-814564|CRISPRCasFinder
GTTGAACTATAACATAGGATGTATTTAAAT	TTCCATCTGATTTGATAACCGCTATGTCCATGATT
GTTGAACTATAACATAGGATGTATTTAAAT	CAGAACAAGTCTTATAAAAATGATTACTATAGCAG
GTTGAACTATAACATAGGATGTATTTAAAT	TCTATAAGTAATATAGCATTGCTTAGTACTTCCATA
GTTGAACTATAACATAGGATGTATTTAAAT	AAATAATGAATTTGGTGTTGGAAGAATAATTTTAGAT
GTTGAACTATAACATAGGATGTATTTAAAT	AATACCATTAGCAGACATACAAGCAAGAAGATTAAC
GTTGAACTATAACATAGGATGTATTTAAAT	TCCCTGTTGCAACATGATAGGAAAGCGAATATACCC
GTTGAACTATAACATAGGATGTATTTAAAT	CTTCCTTTTATTATTTTATATTTCTATCCATTTAGC
GTTGAACTATAACATAGGATGTATTTAAAT	TGTAACCATATAATTATTTTAAATTCTTTATCATTT
GTTGAACTATAACATAGGATGTATTTAAAT	GATGGTGAAGTAACAAATAAAAGATTTGTTGGTGGAA
GTTGAACTATAACATAGGATGTATTTAAAT	CGAATAAAATTCCCAAAATGAAAGTTTGAAACCT
GTTGAACTATAACATAGGATGTATTTAAAT	CAAATCAGTTTTAAATGTTTTCCTAATATCCACAATC
GTTGAACTATAACATAGGATGTATTTAAAT	GAACTTGGATCATCAGGAGATATAATTCTTTGTGA
GTTGAACTATAACATAGGATGTATTTAAAT	CAGATGATGAACGATTTAAATGTACTTATGATAGCAG
GTTGAACTATAACATAGGATGTATTTAAAT

>NZ_CP009933|5|5|813678-814564|CRT
GTTGAACTATAACATAGGATGTATTTAAAT	TTCCATCTGATTTGATAACCGCTATGTCCATGATT
GTTGAACTATAACATAGGATGTATTTAAAT	CAGAACAAGTCTTATAAAAATGATTACTATAGCAG
GTTGAACTATAACATAGGATGTATTTAAAT	TCTATAAGTAATATAGCATTGCTTAGTACTTCCATA
GTTGAACTATAACATAGGATGTATTTAAAT	AAATAATGAATTTGGTGTTGGAAGAATAATTTTAGAT
GTTGAACTATAACATAGGATGTATTTAAAT	AATACCATTAGCAGACATACAAGCAAGAAGATTAAC
GTTGAACTATAACATAGGATGTATTTAAAT	TCCCTGTTGCAACATGATAGGAAAGCGAATATACCC
GTTGAACTATAACATAGGATGTATTTAAAT	CTTCCTTTTATTATTTTATATTTCTATCCATTTAGC
GTTGAACTATAACATAGGATGTATTTAAAT	TGTAACCATATAATTATTTTAAATTCTTTATCATTT
GTTGAACTATAACATAGGATGTATTTAAAT	GATGGTGAAGTAACAAATAAAAGATTTGTTGGTGGAA
GTTGAACTATAACATAGGATGTATTTAAAT	CGAATAAAATTCCCAAAATGAAAGTTTGAAACCT
GTTGAACTATAACATAGGATGTATTTAAAT	CAAATCAGTTTTAAATGTTTTCCTAATATCCACAATC
GTTGAACTATAACATAGGATGTATTTAAAT	GAACTTGGATCATCAGGAGATATAATTCTTTGTGA
GTTGAACTATAACATAGGATGTATTTAAAT	CAGATGATGAACGATTTAAATGTACTTATGATAGCAG
GTTGAACTATAACATAGGATGTATTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009933.1\|WP_029159827.1\|822962_823214_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239278
NZ_CP009933.1\|WP_082085039.1\|803120_803273_+\|DUF4351-domain-containing-protein	unknown	unknown	gnl\|CDD\|316753
NZ_CP009933.1\|WP_029159834.1\|811446_811941_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP009933.1\|WP_029159839.1\|804639_805347_+\|hypothetical-protein	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP009933.1\|WP_029159823.1\|827208_828585_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP009933.1\|WP_029159824.1\|826164_827088_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143588
NZ_CP009933.1\|WP_029159835.1\|808800_811398_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP009933.1\|WP_029159829.1\|819606_821604_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239241
NZ_CP009933.1\|WP_029159830.1\|817211_819089_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP009933.1\|WP_029954479.1\|800843_802235_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182694
NZ_CP009933.1\|WP_029159821.1\|829918_830599_-\|membrane-protein	unknown	unknown	gnl\|CDD\|225239
NZ_CP009933.1\|WP_029159826.1\|823213_824935_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274983
NZ_CP009933.1\|WP_029159832.1\|813210_813498_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP009933.1\|WP_029159838.1\|805363_807130_+\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
NZ_CP009933.1\|WP_029159825.1\|824934_826107_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP009933.1\|WP_029159833.1\|812207_813209_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP009933.1\|WP_029159822.1\|828734_829859_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|225019
NZ_CP009933.1\|WP_029159837.1\|807122_808055_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP009933.1\|WP_029159836.1\|808058_808787_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NZ_CP009933.1\|WP_029159828.1\|821821_822616_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380352

Protein	Function_ID	Function_description	E-value
NZ_CP009933.1\|WP_029159827.1\|822962_823214_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	6.25368e-10
NZ_CP009933.1\|WP_082085039.1\|803120_803273_+\|DUF4351-domain-containing-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	2.63004e-07
NZ_CP009933.1\|WP_029159834.1\|811446_811941_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.62376e-51
NZ_CP009933.1\|WP_029159839.1\|804639_805347_+\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.98138e-06
NZ_CP009933.1\|WP_029159823.1\|827208_828585_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	6.70782e-115
NZ_CP009933.1\|WP_029159824.1\|826164_827088_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143588	cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that NIT3 may produce IAA during the early stages of germination, and that NIT3 may produce IAA during embryo development and maturation. AthNIT4 has a strong substrate specificity for the nitrile, beta-cyano-L-alanine (Ala(CN)), an intermediate of cyanide detoxification. AthNIT4 has both a nitrilase activity and a nitrile hydratase (NHase) activity, which generate aspartic acid and asparagine respectively from Ala(CN). NHase catalyzes the hydration of nitriles to their corresponding amides. This subgroup belongs to a larger nitrilase superfamily comprised of belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 1.	5.50344e-144
NZ_CP009933.1\|WP_029159835.1\|808800_811398_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.05246e-26
NZ_CP009933.1\|WP_029159829.1\|819606_821604_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|239241	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.	0
NZ_CP009933.1\|WP_029159830.1\|817211_819089_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.5342e-26
NZ_CP009933.1\|WP_029954479.1\|800843_802235_-\|amino-acid-permease	gnl\|CDD\|182694	PRK10746, PRK10746, putative transport protein YifK; Provisional.	0
NZ_CP009933.1\|WP_029159821.1\|829918_830599_-\|membrane-protein	gnl\|CDD\|225239	COG2364, COG2364, Predicted membrane protein [Function unknown].	4.56949e-32
NZ_CP009933.1\|WP_029159826.1\|823213_824935_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	4.13879e-60
NZ_CP009933.1\|WP_029159832.1\|813210_813498_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.82873e-23
NZ_CP009933.1\|WP_029159838.1\|805363_807130_+\|hypothetical-protein	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	6.38362e-19
NZ_CP009933.1\|WP_029159825.1\|824934_826107_+\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	3.70785e-12
NZ_CP009933.1\|WP_029159833.1\|812207_813209_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.4286e-135
NZ_CP009933.1\|WP_029159822.1\|828734_829859_+\|radical-SAM-protein	gnl\|CDD\|225019	COG2108, COG2108, Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only].	6.65526e-110
NZ_CP009933.1\|WP_029159837.1\|807122_808055_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	3.29418e-45
NZ_CP009933.1\|WP_029159836.1\|808058_808787_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.0626e-43
NZ_CP009933.1\|WP_029159828.1\|821821_822616_-\|cupin-domain-containing-protein	gnl\|CDD\|380352	cd02223, cupin_Bh2720-like, Bacillus halodurans Bh2720 and related proteins, cupin domain. This family includes bacterial, archaeal, and eukaryotic proteins similar to Bh2720, a Bacillus halodurans protein of unknown function with a cupin beta-barrel fold.	1.84401e-62

>NZ_CP009933.1|WP_029159832.1|813210_813498_+|CRISPR-associated-endonuclease-Cas2
MGKIENCNYAFVFYDINEKRVQRVFKICKKYFKHHQKSVFRGSITPSNLIKLRAELKKVIDESEDFVSIIKLMNEKSFSEETLGVNLENSESLIL
>NZ_CP009933.1|WP_029159833.1|812207_813209_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MGSGTRFIMSQGDITRKDNSICFRKGNKNTYMPVEATKELYLLNEVSLNTKFLDFAAKAGIVIHFFNYYGYYSGTFYPKEYLISGNLTIKQSEAFIKNRIHIAKAFVKGIGINIYEVVYHYYKHDKKETKEFLDWIKKDFMDILDKTNDIKQVLFIEGQVWMKFYDNFKYFLPEDFLMNKRVKRPPDNPMNAMISFGNSILYARTISQIYHTHLNQSISFLHEPSEGRFSLSLDLSEVFKPAIVYKTIFELVNNKKIQVSKHFDRKLNYCLLNEAGKKVFIPALEERFNSVFEHAKLKRKVSYEAAIKYDGYKLIKYIVEGKDFVPFSLKEMM
>NZ_CP009933.1|WP_029159834.1|811446_811941_+|CRISPR-associated-protein-Cas4
MKITGTIINYYIHCKRQCWLHGHRINLEDNSEEVRIGKVLHELAAEGKKNAEISIENIKIDKITDEYLVEMKKSDADVEAVKWQVLLYLKILKEKGIEKKGKIQFEEKKKQDKKIVYIDLTEENEQALQEFLNSINNLLEQENPPKEELKKGCKKCAYYEYCFI
>NZ_CP009933.1|WP_029159835.1|808800_811398_+|CRISPR-associated-helicase/endonuclease-Cas3
MYFEHVDVFKIEDHVSNLENMYAHRDTENKNPKEHLKCHIERTIEYFYFICREKNLDNIFINLEKSLLKGKDIVLVKLWKEMLINTVYMHDVGKINPAFQYDIMLNDFYKDNESRDSKHSLLSSYIYVSYFNKKIKNLDIEKLDKSFLRYFMYLNAYIISKHHGYLSDFEGFGTYLSDETEDYFKEDDFPDLNMDTLKSSIIANFFYPDKIKDIKEYVENEDNNFSIYIYTKILFSILTASDYYATAEYMDGHKVVDMGTITKELKERFCSEFNNYEITKSIRNYEKNPVIDGNYTSINELRSEITLESEKNYLKNKDKNIYYLEAPTGAGKTITSINLANLILKSEENINKLFYVFPFNTLVEQTEKGLKDIFKSDITQNISVINSLTPIKTVDENEDYKDFRSKENNRKIDYKKSLLNRIFLNYPFIITTHVNLFNYLFGTSREEGFPLIHICNSIVIIDEIQSYKNGIWKEIINFLNAYAEILNIKVIIMSATLPRLNKLVEGEDNNFVYLIEDRKHYFGNPLFKNRVQFEMLNLGEDPESEGFELLLKDILMESKSNNKILIEFIFKKHADKFFDYMNENFISDSGYEIKVITSDDNKIDREKIIKLAKGKKNRVIIISTQVIEAGVDIDMDLGYKNISILDAEEQFMGRINRSCLNSGRVKFFQIDNCRLLYKDDVRKEKELTLINPEIHGILRNKDFEGYYDRVINKIEKKKTEINDKGYLSFIKQLYNLNFEKIKDYMKLIDDEMNQNKYTIFLSRKIEIKDEKSGNTDILDGSILWKDYKKLLMDSKMDYSERRVKLSEKNAQLSYFIYKVKKLPSQYNEILGDIYYIEDGEKYVVNGRFNQEIFMGETSDEANLIL
>NZ_CP009933.1|WP_029159836.1|808058_808787_+|type-I-B-CRISPR-associated-protein-Cas5
MQAVRFKLSGRTAFFKKPDVNTYYYFTYGNIHKVALLGIMGSIVGLDGYNKQSEVYPKFYEKLKGAKTAVVTCNKQGYITKKIQTFNNSVGYASLEQGGNLIVKEQWLQDPCWIIYVKIDETTEEFAELLLNNKAKFIPYLGKNDHFADITDVKKVDLKEVKEVSHIQSLFKTGDFKIDTYIDEEEEDFNPWRYRECLPVGLDETLNQYEFEDFTATNLSIKNTNNITLYKDNELNKVVYLF
>NZ_CP009933.1|WP_029159837.1|807122_808055_+|type-I-CRISPR-associated-protein-Cas7
MNRVYGVIGIKAVMANWNADFSGYPKTISDGTVFGSDKALKYSMKKYWETNSEKVLYIKSFKVDKDKKMKPKSLEERYNEIFNTTLTKKDETTVILKNLFSAVDVKAFGATFAEEGNNIGLTGAVQIGQGFNVYEDSNAEEQQILSPFRSDKKAKEGEEAAEANQSTLGTKIVSNEAHYLYPFYINPISYKNYEEMGVTEGYTQEDYNKFKEAALVGATALNTNSKAGCENEFAMFIETEEDIYLPNLTQFMDFQKVNKNDTLELNLDDLLDGVKDKIKGMEIYYNNYKLKLNNIPKGAKTFNIFTRKEV
>NZ_CP009933.1|WP_029159838.1|805363_807130_+|hypothetical-protein
MISEISEVFKKQYEEKGEGLIIDNYVLAPGQYAMFTLEDTADTIDIFDVNKKTDTEEENYKNFAKLDYMSGLISMNKPVDPNKIIHSNNMYAFYVKKDNLDAEKGKLKDETIDAYYSILKNPKIKYKNKPKSLELYLKAEEKYGKSDEELIDKINLWIKENIYKIALKLKLDKTYLKLFYKTNSENYEKESEKYILPNIYNSTDYNVKIKEKVYGLPDFNMGLNSKKPYLENKTRKTKLPLLVPADKIVIQKKLFSYLLNCSAQGKNYVYVGNEIEEMTPREGRNKNFQGHFLRVNKGKEVEIVDSDVVTSYRYKLKRVVKLSRIIDKGIGKDFLPLKKSFSNLNELKGYIDEIFFSNYLNNNYFTEPKEIRLDDSKLKEIFIKYRYGFYTWFYKGEDSLVSKFWNKVTRELLCNSMLRGNVNKAINQFNLRYALLDYFKNENGGDNMASCVKNMRKSLDEKINIKVDSDYKVEINDDKEYYFCVGQLMQYFYALNKSGTKNYSFIRPILSAKNDDFIKEQLRRLFIKYSYAIKGSLKFSNMYYMVEAYAPEGDVDQDILIAGFLCPNLILKKSDKNNGEIGEDIKHE
>NZ_CP009933.1|WP_029159839.1|804639_805347_+|hypothetical-protein
MHIFECNFKVVLIKDISKEDVQETISKLIDKSFYKNESLKDFHEENRIKGYCFNSLYPISINKDYSEGEIYNFQIRCVGEELKNHFVKFLTNEYTTSIKALTCESKSIFKKPLDRIYSITPAVIKILDVEKTEYWRNKHNEEDFFEYIRENSIKKYEVLTGEKVDRSLRIFTYERIDNRTPIATSFKCRRMLGDKITLTVDTGIEAQNIAYMLLGTGVGDMSPRGYGYMNYQYIK
>NZ_CP009933.1|WP_082085039.1|803120_803273_+|DUF4351-domain-containing-protein
MVIKLLNKKFKNVDGDVIERIKVLSSDSLNLIIEDILDIESIEDLKKVWD
>NZ_CP009933.1|WP_029954479.1|800843_802235_-|amino-acid-permease
MEKKELTRGLKARHIELIALGGTIGVGLFMGSASTIKWAGPSVLLAYAVAGIAMYIVMRIMGEMLYLEPLTGSFATYANKYISPWAGYMTAWCYWFMWIAVGMSEVTAIGIYMNYWFPALPAWIPALIGVAILAAANMTSVKFYGEFEFWFSLIKIITIIVMLLVGFGLIFFGIGNHGTAIGLTNLTANGGFFAGGLKGWLFALCLVTASYQGVELIGITAGEAQDPKNTLRKATKNIIWRILIFYIGAIFVIVTIYPWNQISALGSPFVLTFAKVGVSAAAGIINFVVLTAAMSGCNSGIYSCGRMLYTLSKNGQAPKFLGKVNKEGVPVNALKTTLACLLCCVILNYLCPNSKLFVYIYSASVLPGMIPWVVLCISQIKFRKEHAAEMETHPFKSRLFPYANYVVVVYLCLVLMGMCFNSDTQIPLLVGAIFCAIVTIAYFAFGINKKTAPEIKEFKNENL
>NZ_CP009933.1|WP_029159830.1|817211_819089_+|APC-family-permease
MLKKFLDVLFGEPLANEQGKHEKYNIPFGLAIMASDAISSVAYGAQEILFVLIVLGASAYQWLTWTSFMIIGLLIILTIAYIQIIKAYPQGGGAYKVAKENIGDKAGLSAGAGLIISYILTVAVSASAGADAIISAFVGLAEYKVIFVVAIIVVLTILNLRGISESSKIFAIPTYIFIFSMIFMIVYGLFKYFVLNIHPQPMFSVPAGTTENLSIFLILRAFSSGCSALTGVEAVSNSVPNFQEPSQKSAKTVMILLAALIFFIFGGTSVLAIFYTAVPIANGPTVVSQIAFGVFHNGIMYYVIQFSTAVILLMACNTAYTGFPMLMYIVGKDGFAPRQFTIRGKRLSFSFGICALSFIACVLVTIFKADTHRLIPLYAIGVFISFTLGQFGMVNHWRKERGKGWIKRAIINGCGAAVTLFTTIIILVEKFSEGAFIVAILIPMIILVQMRIKHHYNKVANGLSISQINLKKLNLRIKYTHTVIVPIASLNKAVIGALKYAQSISDNVIALNISTDMEAMERLKQRWSELDTDITLISKYSPYRAVITPLLQNIVSIADKAGEDEKVTVIVPQFITHGHFGKVLHNHTSFFIRETLLKNNNIIVSTFPYHLSDEEIAAANKKIKK
>NZ_CP009933.1|WP_029159829.1|819606_821604_+|FAD-dependent-oxidoreductase
MSYKYQKLFESVKIGSIEIKNRFAMAPMGPQGLGDEEGAFNQRGVDYYVARARGGTGLIITGVTFVENEVEHHEMPGVPCSTYNPVHFVRTASEMTERIHAYDSKVFLQMSAGFGRVAPPANENVPPIAPSPIPNRWVDVTCREISKDEIHHIVEMFGEGAVNAKRAGFDGVQIHAVHEGYLLDQFAISFFNHRTDEYGGCLENRLRFAREVVEEIKKRCGDDYPVILRYSPKSFIKDWREGALPGEEFEEKGKDIPEGIEAGKLLVQYGYDALDVDVGCYDAWWWNHPPMYQKKGLYIPYAKIMKEAVDVPIICAGRMDNPDLALSALEDGACDMIGLGRPLLADPDYVNKLRLGKTALIRPCLSCHEGCLGRMVKNGSLNCAVNPEACREGVNFLIPALKSKKVLIVGGGVAGCEAARVLKLRGHEPVIYEKTARLGGNLIPGGVPDFKEDDRALIKWYENSLKDLKVDIKLNTEVTSEIVKNSKVDVVIIATGSKPKVFNLGDNSKVFTAADVLCGKKQAGDKVVVLGGGLVGCETALYLKKMGKEVTIVEAMDSLLALNGPSCFANFGMLMALIPYNHINVLTSSKVVKTTDKGVLVNTEGSCEREIEADSVVLAVGYNSNKELYDSLKYEVQDIRLLGDARKVSNIMYAVWDAYEVASKL
>NZ_CP009933.1|WP_029159828.1|821821_822616_-|cupin-domain-containing-protein
MYNPYETYPYPYFINPQRYMLNAYRTYQCPCMMNMPMYAPNFPNQMDDDRYIPFTNNMHNNINSNMNSNPNNNIKSNMNNNMMNNNLKPNNTKPNNPKSNNSKPINTNPPMKSNLKPDSFKGSKDNNSPKSKDYGPEPFAINIEEATKQNNYYRSTLWTGKHLQLTLMSIDPGDDIGLEMHPDVDQFLRIEEGQGIVKMGNSKKHLDFQMKVHDGFAIFVPAGTWHNVINTGKGPLKLYSIYAPPQHPHGTLHKTKADAQAAGD
>NZ_CP009933.1|WP_029159827.1|822962_823214_+|(2Fe-2S)-ferredoxin-domain-containing-protein
MISISVCVGSACHLKGSHKVIKNLQKLISQYKLEASVELKGAFCLGHCTEGVSVKIDEEEKIYSVNEKNVEQFFNEEVVRRIK
>NZ_CP009933.1|WP_029159826.1|823213_824935_+|4Fe-4S-dicluster-domain-containing-protein
MKYMNFSSANCKNCYKCLRSCPVKAIKFKNQQAEIVEDRCIACSHCLAICPQKARHIVSDLERVKEAINSEKKVIATIAPSFVGFFDVDPGRFVSLLRKLGFSYIEETASGADVVSELYRQYMKEEKLDNYISTACPSANYIVEKYFPNLIKYMIPTVSPMIAHGKVLRKIYGEDSFIVFIGPCMGKKIESEGFTNKEVLDAVITFEEFTSWVEDLNIDIQNLEPCDFDRNSFKDGRKYPLFTGIVNCVSDVIKEKKLEVISISGTEECMELFKSIEKGEVTNAFIEASACKGSCIGGPGMINNEKGYYKRVQKVKNYINKNNSIGERKLDLDMDIEFSRSFIDKSIEKKLASEKEIEKIMMEMGKYSIEDELNCGVCGYNTCREKAEAIFEGMAESSMCLHYMRNRAESIRNVIFENIVNCIIFLDGEMRIKDINPAAENAFTVKAESIVNKPISLIMDDQDFRNVKETGKDILGKKVSFPNYNLDFIETVRYLEKQDIVMIALVNITEEEKNKRKLVKLKENTINTAQEVIEKQMRVAQEIASLLGETTAETKIALTKLKKVVEEEKGCDS
>NZ_CP009933.1|WP_029159825.1|824934_826107_+|SpoIIE-family-protein-phosphatase
MDFFIEVAHGTLIKHGEELPGDMVNVVRLEDCTIIVLADGLGSGVKANILATLTSKIAGTMLKEGADIYETVDTIANTLPVCKVRNIAYSTFTIIKIYNNGEAYIAEYDNPPFFAMRNGESMDISKKKSIINDKVIKESNLVLQEDDVLTVVSDGVIHAGLGEILNLGWQWKDVEAYLKKRTSSNLNVQVVAKDLLEACWDLYCRKPGDDTTVVSIKVRKPSFVNLFTGPPKDKEKDSMVIKNFMDAPGKKVICGGTAANIAERELGRKLKVNLEFFNKDVPPTATMEGIDLITEGVLTLSMVIEKIKKYLNPSSKNIEYIDCDGKDGVSSLVKILMEDCTHLNLWVGMAVNPAHQNPDFPADLSIKLKLVGELYNQMKALGKKVHINYV
>NZ_CP009933.1|WP_029159824.1|826164_827088_-|carbon-nitrogen-hydrolase-family-protein
MKNLEKNCKVALVQAAPVMFNKDATIDKVVQEILEAGKQGANLIVFPESFIPCYPYGMTFGFTVGSRTEEGRKDWKVYYDNSVIVPSADTDRIAKAAGEANAYVSIGITERDINTCTLYCTNLIFSPEGKLVSKHRKLKPTGAERFIWGDGYEGAFPVIDTPWGNMGSLICWENYMPLARAALYMKGVSLYLAPNTNNNEEWQTTIRHIAIEGHCYVINVNQYVTKDMYPDIFHCPEEIAKLPEGVLTGGSCIVDPFGHYVKAPVWDKEEIIYIDIDMEQVPLSRMEFDGTGHYSRPDVLELIIHEN
>NZ_CP009933.1|WP_029159823.1|827208_828585_+|PLP-dependent-aminotransferase-family-protein
MLKYQLIVKYIKSEISNGNLEAKKKLPSLRRISELFQCSIGTVLKAYTELEKEHIVYSLSKSGYYVLESDLSNSNSQDNPLIDFSSGSPDIESLPYKKFQHCLNNAIELYKENLFTYSNPKGLNSLIQILTSHLEEYQVFTKPENIVITTGSQQALNILTNMPFPNGNSKVLVEQPTYYGMIRALELNNIPSVGIERGFNGINLEELERLFKYGNIKFFYTIPRFHNPTGNSYTRQEKEAIAKMAKKYNVYILEDDIMADLEIDKKSDPIFAYDTSSKVIYLKSYSKVLMPGLRIAATILPKLLINTFLEYKKWLDMNSPILSQGALEVYLKSGMLDKHRKKISKLYSDRMSCLKNTISSFKQSKIKYNVPKSGYFACIYVDSKLQYDKIISTLSNKNIQLLDTRTCFLREYRIDNYFRISISKTNEEKIKKGMPVLIDTIQRYLTDDNDNFHFYPKI
>NZ_CP009933.1|WP_029159822.1|828734_829859_+|radical-SAM-protein
MKISKKDALTWFEFFSTLPEDEELMIKQQEIIYATFAQIEAAIDDRNKKLMSEIKGLKTLENRTFFVGDESKFSKGCRSCLLGTGLSAIRKTNKCNIECKFCYNYGDLDNIPPIGEGMWEIGGTKFYEKDIDLLLSIHKKPTGISYVYLEPFMEIEKYYSIIKKFNDANIHQHLYTNGILATSETLKALGEAGLDEIRFNLGASNCSDKVIENIKIAKKYIKNVGIETPMTPEFFEAFFKKKQAILDTKLDFINCAELHLNENNIDNYYGENMYISRQGYISPIWSRKLTFEFMKIADEEKWDLVVHDCSNHTKFARDLNLSSKEGKWFGASDYACEFAKVPYEAFLSILRDDNFKFLSEEELPQGYKPGEMIF
>NZ_CP009933.1|WP_029159821.1|829918_830599_-|membrane-protein
MSKLKIIIRYFIFISGLFFMGLGISLTSKSGLGTSPINSLPYVLSMIFPLTVGQFTFLLSILFFIVEIIVLRKDFPKEQYLQLFVGPFFGFFVDLGMSIFAFVNPDAYLVKILVLLSGCFLLALGVYLQVIANVIINPGEGVVKAISNKFTKKFGNIKIALDSTLCIIAIIISLFTFGNIKGVREGTIICAVLVGNITKIYSAIFQYFKSRNNIRVNEDSGSNQSA

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Crispr_ID: NZ_CP009933_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009933_6

1794038-1794120

Orphan

Consensus_repeat	Method
AAGCAAACTGTTCTTGTGGAGCTGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009933_6

>merge|NZ_CP009933|6|1794038-1794120|CRISPRCasFinder
AAGCAAACTGTTCTTGTGGAGCTGGAGCAGGATTCCCATTCCAAGGTGCCGGTGCTAAAGCAAATTGTTCTTGTGGAGCTGGA

>NZ_CP009933|6|6|1794038-1794120|CRISPRCasFinder
AAGCAAACTGTTCTTGTGGAGCTGGA	GCAGGATTCCCATTCCAAGGTGCCGGTGCTA
AAGCAAATTGTTCTTGTGGAGCTGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009933.1\|WP_029159259.1\|1790596_1791454_-\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|223364
NZ_CP009933.1\|WP_029159260.1\|1789531_1790593_-\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|341474
NZ_CP009933.1\|WP_029159266.1\|1783488_1784400_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176125
NZ_CP009933.1\|WP_046065961.1\|1802253_1802514_+\|DUF1294-domain-containing-protein	unknown	unknown	gnl\|CDD\|377743
NZ_CP009933.1\|WP_029159249.1\|1800005_1800833_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP009933.1\|WP_029159264.1\|1785219_1786035_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|223247
NZ_CP009933.1\|WP_029954326.1\|1798962_1799910_-\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224619
NZ_CP009933.1\|WP_029954328.1\|1795495_1795843_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|376468
NZ_CP009933.1\|WP_029159258.1\|1791472_1792486_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|181535
NZ_CP009933.1\|WP_029159257.1\|1793260_1793467_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009933.1\|WP_029159254.1\|1794829_1795492_-\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|349775
NZ_CP009933.1\|WP_046065960.1\|1801055_1802195_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009933.1\|WP_029159252.1\|1795950_1797351_-\|nickel-dependent-hydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|380187
NZ_CP009933.1\|WP_046065959.1\|1784697_1785210_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NZ_CP009933.1\|WP_029159251.1\|1797368_1798202_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP009933.1\|WP_029159255.1\|1794392_1794833_-\|hydrogenase-maturation-protease	unknown	unknown	gnl\|CDD\|99872
NZ_CP009933.1\|WP_029159263.1\|1786041_1787166_-\|chorismate-mutase	unknown	unknown	gnl\|CDD\|270349
NZ_CP009933.1\|WP_029159262.1\|1787180_1788254_-\|chorismate-synthase	unknown	unknown	gnl\|CDD\|376510
NZ_CP009933.1\|WP_029159261.1\|1788231_1789512_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP009933.1\|WP_029159250.1\|1798245_1798668_-\|cytochrome-b5	unknown	unknown	gnl\|CDD\|227229

Protein	Function_ID	Function_description	E-value
NZ_CP009933.1\|WP_029159259.1\|1790596_1791454_-\|prephenate-dehydrogenase	gnl\|CDD\|223364	COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism].	3.46131e-69
NZ_CP009933.1\|WP_029159260.1\|1789531_1790593_-\|3-dehydroquinate-synthase	gnl\|CDD\|341474	cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol condensation. The binding of substrates and ligands induces domain conformational changes. In some fungi and protozoa, this domain is fused with the other four domains in shikimate pathway and forms a penta-domain AROM protein, which catalyzes steps 2-6 in the shikimate pathway.	7.83429e-161
NZ_CP009933.1\|WP_029159266.1\|1783488_1784400_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176125	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold. GltC, a member of the LysR family of bacterial transcriptional factors, activates the expression of gltA gene of glutamate synthase operon and is essential for cell growth in the absence of glutamate. Glutamate synthase is a heterodimeric protein that encoded by gltA and gltB, whose expression is subject to nutritional regulation. GltC also negatively auto-regulates its own expression. This substrate-binding domain has strong homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.67349e-83
NZ_CP009933.1\|WP_046065961.1\|1802253_1802514_+\|DUF1294-domain-containing-protein	gnl\|CDD\|377743	pfam06961, DUF1294, Protein of unknown function (DUF1294). This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.	9.13421e-24
NZ_CP009933.1\|WP_029159249.1\|1800005_1800833_-\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	2.6391e-82
NZ_CP009933.1\|WP_029159264.1\|1785219_1786035_-\|shikimate-dehydrogenase	gnl\|CDD\|223247	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism].	1.79462e-93
NZ_CP009933.1\|WP_029954326.1\|1798962_1799910_-\|glucosaminidase-domain-containing-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	2.7122e-46
NZ_CP009933.1\|WP_029954328.1\|1795495_1795843_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|376468	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA. HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cysteines towards the C-terminus bind one zinc moiety probably to stabilize the protein fold.	5.74387e-38
NZ_CP009933.1\|WP_029159258.1\|1791472_1792486_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|181535	PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase; Reviewed.	0
NZ_CP009933.1\|WP_029159254.1\|1794829_1795492_-\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|349775	cd05390, HypB, nickel incorporation protein HypB. HypB is one of numerous accessory proteins required for the maturation of nickel-dependent hydrogenases, like carbon monoxide dehydrogenase or urease. HypB is a GTP-binding protein and has GTP hyrolase activity. It forms homodimer and is capable of binding two nickel ions and two zinc ions. The active site is located on the dimer interface. Energy from hydrolysis of GTP is used to insert nickels into hydrogenases.	6.45859e-97
NZ_CP009933.1\|WP_029159252.1\|1795950_1797351_-\|nickel-dependent-hydrogenase-large-subunit	gnl\|CDD\|380187	NF033181, NiFeSe_hydrog, nickel-dependent hydrogenase large subunit. Members of this family are the large subunit of the periplasmic nickel-dependent hydrogenase. Some members contain a selenocysteine residue.	1.74264e-158
NZ_CP009933.1\|WP_046065959.1\|1784697_1785210_-\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	3.6852e-60
NZ_CP009933.1\|WP_029159251.1\|1797368_1798202_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	5.60167e-94
NZ_CP009933.1\|WP_029159255.1\|1794392_1794833_-\|hydrogenase-maturation-protease	gnl\|CDD\|99872	cd00518, H2MP, Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.	8.25412e-17
NZ_CP009933.1\|WP_029159263.1\|1786041_1787166_-\|chorismate-mutase	gnl\|CDD\|270349	cd13631, PBP2_Ct-PDT_like, Catalytic domain of prephenate dehydratase from Chlorobium tepidum and similar proteins, subgroup 2; the type 2 periplasmic binding protein fold. Prephenate dehydratase (PDT, EC:4.2.1.51) converts prephenate to phenylpyruvate through dehydration and decarboxylation reactions. PDT plays a key role in the biosynthesis of L-Phe in organisms that utilize the shikimate pathway. PDT is allosterically regulated by L-Phe and other amino acids. The catalytic PDT domain consists of two similar subdomains with a cleft in between, which hosts the highly conserved active site. In gram-postive bacteria and archaea, PDT is a monofunctional enzyme, consisting of a catalytic domain (PDT domain) and a regulatory domain (ACT) (aspartokinase, chorismate mustase domain). In gram-negative bacteria, PDT exists as fusion protein with chorismate mutase (CM), forming a bifunctional enzyme, P-protein (PheA). The CM in the P-protein catalyzes the pericycle isomerization of chorismate to prephenate that serves as a substrate for PDT. The CM and PDT are essentail enzymes for the biosynthesis of aromatic amino acids in microorganisms but are not found in humans. Thus, both CM and PDT can potentially serve as drug targets against microbial pathogens. The PDT domain has the same structural fold as the type 2 periplasmic binding proteins (PBP2), many of which are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.81547e-98
NZ_CP009933.1\|WP_029159262.1\|1787180_1788254_-\|chorismate-synthase	gnl\|CDD\|376510	pfam01264, Chorismate_synt, Chorismate synthase.	0
NZ_CP009933.1\|WP_029159261.1\|1788231_1789512_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	1.15354e-176
NZ_CP009933.1\|WP_029159250.1\|1798245_1798668_-\|cytochrome-b5	gnl\|CDD\|227229	COG4892, COG4892, Predicted heme/steroid binding protein [General function prediction only].	1.89852e-27

>NZ_CP009933.1|WP_029159257.1|1793260_1793467_+|hypothetical-protein
MIILTILLSAVVFILLGSVIAAVALPIFAFIFAIGIVISILALIFKIIFAGPLFILMIIIALYYFFKR
>NZ_CP009933.1|WP_029159258.1|1791472_1792486_-|3-deoxy-7-phosphoheptulonate-synthase
MVVIMRCGATREEIERIKERIEMEGCRVNLIQGENQCILGIVGDTTKLDPDKIQANECVERVTKVQQPFKLANRLFHPSNSEIKVNDQVIGGDKIAIMAGPCSVESEEQILEIAKTVKESGAGFLRGGAFKPRTSPYSFQGLKQEGLELLKLARKETGLPIVTEIMSADMIDTFVEDVDVIQVGARNMQNFDLLKQLGKTRKPILLKRGLSATIEELIMSAEYIMAGGNENVILCERGIRTFETYTRNTLDLSAIPAIKRLSHLPIIVDPSHSAGMWWMVEPLAKAALAVGADGLIIEVHNDPANAKCDGQQSIKPERFKELMKELSQIAKIEKKAI
>NZ_CP009933.1|WP_029159259.1|1790596_1791454_-|prephenate-dehydrogenase
MEECDFNFNIVIVGLGLIGGSYAMALRKLNPLSISGIDVDENSLKEAVNRGIIDQGFTDGKEALRKADLVIMATYPEEIVKFMKSNIGDFKKGAVITDTCGIKEGLIDIINSFLPDELDFVGGHPMAGKESKGIKVASDDIFNNANYIITPTERNLKENIMLIEKMARAIGCKKVISISPEEHDKIISFTSQLPHVIAVSLMDSDFAENNIETFTGGSFKDATRVAVINSTLWSELFFLNSDNLINEIERFQKSMEKIKNAIMSEDENTLKHIFRNATARRKKMV
>NZ_CP009933.1|WP_029159260.1|1789531_1790593_-|3-dehydroquinate-synthase
MKIIEVKLKDNSYKIYIEKNIFEKIAAYLKENHENKKILIVTDKNLEKLYVKALNKTIQDKNFKTKIISIEPGEKSKSIDTLKKLYEDFTNFNLTRGDLILTFGGGVVGDLGGFAAATYLRGIPYIQIPTSLLAQVDSSVGGKVAVDLPWGKNLVGSFYQPKAVFIDPELLKTLDKRFLHDGLAEVIKYGCIRDESIFRTLMNYKDDEELLENIEKIIYTCCNIKKKVVESDEKDLGERMILNFGHTLGHAVEEYFNYSKYTHGEAVAIGMAEITRRSEELNITKIGTHNFIKKILMKYGLPYKRIEMDKEKILHTIKLDKKSSGENINLILLNKIGEGFIKKVSIKEIENYI
>NZ_CP009933.1|WP_029159261.1|1788231_1789512_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKYVMINPSNLGGKVEVPTSKSACHRAVICAGLSKGISNISNVVFSEDVEATCDVMKNLGVRIKKEKNSLQIRGLEKLEPINSSMDCSESGSTLRFLIPVGATTGEKLTFKGNGKLIERPLKCYYNIFDEQKLKYDNANGKLPLTIEGKLKPDEYKVRGDISSQFISGLMFALPLLDGDSKIKITTELESKPYVDLTMDMLKKYGIQIENREYKEFIIRGNQSYKSSDCEVEGDFSQAAFWLAAGLLGSDIVCEGLDINSLQGDKAILNIIKSMNGKISIEGNKIKAEPSKTKGTIIDASQCPDLVPILTSLAALSEGTTEIVNAARLRIKESDRLSAISTELNRLGADIEEKEDGLIIRGKESLKGGEVQSWNDHRIAMALAVASIKCSEPVIIKDASCVKKSYPDFWKHFRALGGNIDEWSLGQ
>NZ_CP009933.1|WP_029159262.1|1787180_1788254_-|chorismate-synthase
MSGVWGSKVRLSIFGESHGKAIGINIDGLKPGIELDLNYINKEMRRRAPGGSELSTPRKEEDNFEILSGYFNGRTTGTPLCAIIYNKNQHSKDYEKTKNLMRPSHGDLTGHVKYQGFNDYRGGGHFSGRITAPLVFAGAICKQILEKKGIFIGSHIKSISKIEDVSFNMTEIESEILKGLNESKFPVLTEEIGINMKNSIIKAKEEMDSLGGVIETAVNNLPVGLGEPFFDSVESILSHLLFSIPGVKGVEFGEGFNISKLKGSEANDGFYIENEKIKTYSNNNGGILGGITNGMPLIFRTAVKPTPSIAKIQNTVDIQKRENAKIEIKGRHDPCIIPRALPVVEAAAAIAIIQFID
>NZ_CP009933.1|WP_029159263.1|1786041_1787166_-|chorismate-mutase
MEDLNYLREQINEIDEELVELFKKRMSVVFNVAHYKIENHMEVLDNSRENQIINKHLKNVEDKALQNYLKEFLQDLMSISRESQKEILSKVSCNCKVDEDSEFKVGFQGVPASFSHQAVNEYFGDNVKSEHFKSFKDIFEAVQKGDIKYGVLPIENSSTGGISEVYDLMREYGFYIVGEKCVKVDHNLMGIENAEICDINEVYSHTQGFLQCKEFFDIHDDWRLIPYFNTAKSAEYVSKENLKNKACVASKKAAEFYGLKILKENINYNSNNYTRFIIIGKKEKSDVNCDKISVILSISHKVGALYKILKHFSDNNLNMMKIESRPIVGKSWQYFFYIDFQGNILNENTRSALKTIEEESLYYKFLGNYKGEVS
>NZ_CP009933.1|WP_029159264.1|1785219_1786035_-|shikimate-dehydrogenase
MGNLYGLIGKTLGHSISPKIHSLILEDLNLNGFYNLFEVNNEDLKKAVIGLKALGAKGINVTIPHKVNIMKYLDDVSMEASKIGAINTIDFKENKLVGYNTDYYGFGESLKREEIDTYNKEAVILGTGGASKAVFHYLLDNGIKDIVFVSRIPENTKDTLKDFKVISYEDMNKLKCKDIIINCTPCGMYPKIESCSVDKNILSKFSSAVDLIYNPIETIFLREAREIGVKTVNGLYMLVAQAIASQEIWQEMKISQEIKKHIYEVIEKYNC
>NZ_CP009933.1|WP_046065959.1|1784697_1785210_-|shikimate-kinase
MKGVINMMSKNIVLIGMPGSGKTTIGKILYEKLRTDFIDMDNYIEDREGKTIPDIFKNGEDYFRKLEKEAVCEVSAKKSAIISTGGGVIKNFSNIENLKKNGIVIFIDRPVENIAKDINVLSRPLLKDGVGKLYELLDERYELYKKYSDFRIENNGKIEDVIEKILELAK
>NZ_CP009933.1|WP_029159266.1|1783488_1784400_+|LysR-family-transcriptional-regulator
MNLKQLQYFRILAQTEHYTKAAEKLYITQPSLSYSISELEREFGTQLFEKEGRNVKLTKYGRFFLSYVEKALDELDLGKNLLLKMVSPTEGKVDLAFIYTLGSKFVPNIVQSFLNETSYKNVEFSFAQGNTQYLINNLKEGKFDLVFCSFVENEPNIDFIPIAQEELVIIVPKDHPLSNYKSISLNETSPYPFVFFSNESGLRPLIDKMFKDSNIVPKIACEAEEDTAIAGFVAINYGIAIIPNIPSLKNFDVKILKIKQPNYKRFIYAATVKNRYNTLATDSFRSFAIKYGKKNYLDTNKYI
>NZ_CP009933.1|WP_029159255.1|1794392_1794833_-|hydrogenase-maturation-protease
MKKVVIGVGNKLMLDDGIAIFVLENIKSVLEDNGIEVIIGETDVDFCFSKLNNVDEFYIADSYFSDRIPGDLTFKKIKDVKKIREHCAVHSLGLMDLINIYKIEIKGYFIGIEIGSIDMSIGLSNDLEVKFKDICSKILSFILNMA
>NZ_CP009933.1|WP_029159254.1|1794829_1795492_-|hydrogenase-nickel-incorporation-protein-HypB
MSEIKVIVNMLHTNEEIALENKKIFDDENIFVINLMSAPGSGKTSILEKLICNIKKNLNIAVIEGDIYTTKDADRIEAKGIPVVQINTSGACHLDADMIREAVLNLDLRNLDMIIIENVGNLVCPAEFEVGEDMKVCVLSVTEGNDKPLKYPLMFEKSEVLILNKIDLIDFTNFSKEEFYKDINKVNSKIKVFETSCINNKGMDKLSNWILQKANEKISI
>NZ_CP009933.1|WP_029954328.1|1795495_1795843_-|hydrogenase-maturation-nickel-metallochaperone-HypA
MRLHEISIMESTIDIVLKKAEECNFKTIRKVTLKIGELSGVMDEALNFAFNELKNYSMLRDAELCIDKVKAMAYCEECKENYPIDHFNKLCPRCGSFSSQIVNGYELYLYSIEGE
>NZ_CP009933.1|WP_029159252.1|1795950_1797351_-|nickel-dependent-hydrogenase-large-subunit
MATRITIEPITRISGPLSMEVEIEKNKIINAKSSGVLFRGFESMLKGRPPLDAVYFTERICGICSTAHGVVASLALEDALKVKPDKNGVRIRDFAHGADFIQNIIRQICLFVFPDYAKIKEVPGSIDYDFRLPDKLTQKISEDYLKALEYSRFAHEMVAIIGGKAPHNHGVFVGGTTANLDASKIIRLKYLLQQIYEFICSDMIEDINIISAYYPEYFKMGAGTKNLLTFGLFNDLPEKELVYVYPSVYMDDKKGSLDVDAIKEGVEYSWYKNTKSNIVPSEKPSELDIKKPGAYTFIKAPRYRGKVVQVGPLARMILGGYYKYNVSTMDRLIARVLEGKILSEKMLKLLDFIMPIPAVQNQYIIPESAEGKGLYDAVRGALGHWIKIENGVIKNYDIITPTVWNLSPKDSMSQHGAIEESLIGTEIQDVKNPIEIGRIIRSFDPCVSCATHVITDCCKDYNIEIV
>NZ_CP009933.1|WP_029159251.1|1797368_1798202_-|hydrogenase-small-subunit
MPLMKLVYEAIDKINRGIVKKPNFIWLECTGCEGNIISFLNADKPDFKYFLNQMVNLKYSNSLMQPDGERAYENFLETLNTDFILGVEGAITKKDNGFYTLMAYYNGKQISAAEGVSLAAAKTKKVIAIGTCASFGGISAAKPNPTGCMSLSEFLNRKIINIPGCPANPLWVIGTIASLILYGEIDVDDKGRPLMFYRETNHTDCERRSYFDNNIFAKKLGEHECMFKLGCRGPITKAYCPLGKWNSRMNWPVENNTPCIGCASEYFPDGTEPFIRY
>NZ_CP009933.1|WP_029159250.1|1798245_1798668_-|cytochrome-b5
MDKRTSQELKNMLQEINYYKKLINASICPYEKIYLINTIAYKVTEILDDINMNENMEREVPIQSSNEFTIEELAEYDGSMGKPAYVAVNGIVYDLSFSSVWGGGTHFGLYAGRDLSKEFKSCHGNKVEMLKNLPVVGKIK
>NZ_CP009933.1|WP_029954326.1|1798962_1799910_-|glucosaminidase-domain-containing-protein
MGKKINNLLKIIAVIVFFCGIFAIAKYYIYKHEHINTKNVNMTLYIDTTDNVSKDKLQVNWKQLAAIDGVRYKNDFSKVSGESITKLASMFLAKNTSVHNVGNSKYKLLSLDEVLDKLSLKKSEKEKVYRYLKDLDSVALNRKLKDDPSYKNFIDELTPEAIDIYNRYGILPSVTISQAILESGWGKSELTSKSNNLFGIKADSSWKGKSVVMKTSEYYDKIIKDSFRVYASKSESLKDYGDFLYKNKRYKDKGVLSALNYRDQAEAIEKAGYSTVQDKKGNEIYADLVIKIIKENNLQLIDNKVQLEKSQALSK
>NZ_CP009933.1|WP_029159249.1|1800005_1800833_-|alpha/beta-hydrolase
MFNNLQGEFNTFDGTKLFYSKDIVDSAKAVVVIVHGLCEHLERYNYFTNKLNNFGYTVYRFDNRGHGKSGGERGYIENFQDFFKDADKVVNMALEENKGLPVFMFGHSMGGFITAGYGMKYKNKLKGQILSGAAITEPHAFKDLKKDNYFEKHPREKSPNALSKFICRDENVVKDYDNDPLVLKETNIKLLGEAFIKGAKWISENVKNYEYPCLILHGEMDRIVKNEASKWMFNNIHSHDKSMKIYPKCYHEILSEKDEKDDIIEDIHKWIEERI
>NZ_CP009933.1|WP_046065960.1|1801055_1802195_+|hypothetical-protein
MDKFTDELRAKKVINRNDIQTFKNYIDKKYAKNQTKERASMLSNTIHHILYTKLEGIPDEYKSSIKVNILKNTFAKNKTSITMYDIFNCCLMENKLKTNCTSLLTNWINLNIDNPIKHEDLKSYLGIKDEVNDKHKIKNTDDNKLIVDIHNNNIDVEDNAPNYKFLNTYLKYLGTLKFNNKIIITFIVIIFLIMFYPISKVAYSMSSKSNFKFYSFKEKSVSQGLLQNTNSKFSNAHLPDYMKYKNIDEVKLKKFLTLHKSLLVKEPYFSTIMSVAKEFNLNPLVLFSITGQEQSFVPEDTKFASKIANNPFNVFHSWQEYNTDIKDASKIAARTVINLSKDMPKDSDPFLWVGKSYAEDKNWGKGVEAIFKDLSEKCK
>NZ_CP009933.1|WP_046065961.1|1802253_1802514_+|DUF1294-domain-containing-protein
MKIFLCYILLINLYAIFLMHSDKSKSQKGKWRIPEKTLFVTSLLLGSPGILIGMYLFRHKTKHKRFTIGIPVILIIQIFIFAKYFS

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Crispr_ID: NZ_CP009933_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009933_7

5455041-5455161

Orphan

Consensus_repeat	Method
TAAATAGGAGGTTAAAGGTCTAAATGACCTTTAACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009933_7

>merge|NZ_CP009933|7|5455041-5455161|CRISPRCasFinder
TAAATAGGAGGTTAAAGGTCTAAATGACCTTTAACGAGTAGTTTACGAGCGGGAGCGAGTAGGATTAACTACTCCGTGTTTCCGACTAAAAGGAGGTTAAAGGTCTAAATGACCTTTAACG

>NZ_CP009933|7|7|5455041-5455161|CRISPRCasFinder
TAAATAGGAGGTTAAAGGTCTAAATGACCTTTAACG	AGTAGTTTACGAGCGGGAGCGAGTAGGATTAACTACTCCGTGTTTCCGA
CTAAAAGGAGGTTAAAGGTCTAAATGACCTTTAACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009933.1\|WP_029162287.1\|5451153_5452059_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|180267
NZ_CP009933.1\|WP_029163543.1\|5463153_5463810_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223564
NZ_CP009933.1\|WP_029162292.1\|5455231_5455777_+\|2-oxoacid:acceptor-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|376567
NZ_CP009933.1\|WP_029162282.1\|5444954_5446304_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227601
NZ_CP009933.1\|WP_029163546.1\|5465787_5466609_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP009933.1\|WP_029163540.1\|5460230_5460491_+\|4-hydroxyphenylacetate-decarboxylase-small-subunit	unknown	unknown	gnl\|CDD\|376095
NZ_CP009933.1\|WP_029162283.1\|5446504_5447365_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375659
NZ_CP009933.1\|WP_029162281.1\|5443914_5444796_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP009933.1\|WP_029163539.1\|5457501_5460195_+\|4-hydroxyphenylacetate-decarboxylase-large-subunit	unknown	unknown	gnl\|CDD\|153086
NZ_CP009933.1\|WP_029163542.1\|5461770_5462586_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP009933.1\|WP_029162286.1\|5449069_5450938_+\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_CP009933.1\|WP_029162289.1\|5452913_5453117_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|236597
NZ_CP009933.1\|WP_029162288.1\|5452119_5452812_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238484
NZ_CP009933.1\|WP_029163541.1\|5460500_5461439_+\|4-hydroxyphenylacetate-decarboxylase-activase	unknown	unknown	gnl\|CDD\|274163
NZ_CP009933.1\|WP_029163544.1\|5464132_5465101_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_CP009933.1\|WP_029162285.1\|5448478_5448982_+\|DUF1097-domain-containing-protein	unknown	unknown	gnl\|CDD\|368942
NZ_CP009933.1\|WP_029162290.1\|5453216_5454296_+\|3-methyl-2-oxobutanoate-dehydrogenase-subunit-VorB	unknown	unknown	gnl\|CDD\|235942
NZ_CP009933.1\|WP_029163538.1\|5456397_5457465_+\|butyrate-kinase	unknown	unknown	gnl\|CDD\|235099
NZ_CP009933.1\|WP_029163545.1\|5465093_5465735_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP009933.1\|WP_029162284.1\|5447418_5448354_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223728

Protein	Function_ID	Function_description	E-value
NZ_CP009933.1\|WP_029162287.1\|5451153_5452059_+\|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase	gnl\|CDD\|180267	PRK05805, PRK05805, phosphate butyryltransferase; Validated.	2.16067e-112
NZ_CP009933.1\|WP_029163543.1\|5463153_5463810_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|223564	COG0490, COG0490, Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism].	2.49789e-25
NZ_CP009933.1\|WP_029162292.1\|5455231_5455777_+\|2-oxoacid:acceptor-oxidoreductase-family-protein	gnl\|CDD\|376567	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase. This family includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyzes the final step in the fermentation of carbohydrates in anaerobic microorganisms. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.	6.73934e-37
NZ_CP009933.1\|WP_029162282.1\|5444954_5446304_+\|hypothetical-protein	gnl\|CDD\|227601	COG5276, COG5276, Uncharacterized conserved protein [Function unknown].	3.2714e-16
NZ_CP009933.1\|WP_029163546.1\|5465787_5466609_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	7.02836e-125
NZ_CP009933.1\|WP_029163540.1\|5460230_5460491_+\|4-hydroxyphenylacetate-decarboxylase-small-subunit	gnl\|CDD\|376095	pfam18671, 4HPAD_g_N, 4-Hydroxyphenylacetate decarboxylase subunit gamma N-terminal. 4-Hydroxyphenylacetate decarboxylase (4-HPAD) is a heterotetramer consisting of catalytic beta-subunit harboring the putative glycyl/thiyl dyad and a distinct small gamma-subunit with two [4Fe-4S] clusters (EC:4.1.1.83). The gamma-subunit is proposed to be involved in the regulation of the oligomeric state and catalytic activity of the enzyme and it comprises two domains with some amino acid sequence identity that are structurally related by a pseudo-2-fold symmetry indicating a gene duplication origin. This entry represents the N-terminal domain which binds one [4Fe-4S] cluster through His3, Cys6, Cys19, and Cys36.	3.7188e-13
NZ_CP009933.1\|WP_029162283.1\|5446504_5447365_+\|hypothetical-protein	gnl\|CDD\|375659	pfam18232, Chalcone_N, Chalcone isomerase N-terminal domain. This is the N-terminal domain of chalcone isomerase present in Eubacterium ramulus. Chalcone isomerase is involved in the degradation pathway of flavone naringenin.	1.47022e-67
NZ_CP009933.1\|WP_029162281.1\|5443914_5444796_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.18413e-34
NZ_CP009933.1\|WP_029163539.1\|5457501_5460195_+\|4-hydroxyphenylacetate-decarboxylase-large-subunit	gnl\|CDD\|153086	cd01677, PFL2_DhaB_BssA, Pyruvate formate lyase 2 and related enzymes. This family includes pyruvate formate lyase 2 (PFL2), B12-independent glycerol dehydratase (DhaB) and the alpha subunit of benzylsuccinate synthase (BssA), all of which have a highly conserved ten-stranded alpha/beta barrel domain, which is similar to those of PFL1 (pyruvate formate lyase 1) and RNR (ribonucleotide reductase). Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. DhaB catalyzes the first step in the conversion of glycerol to 1,3-propanediol while BssA catalyzes the first step in the anaerobic mineralization of both toluene and m-xylene.	0
NZ_CP009933.1\|WP_029163542.1\|5461770_5462586_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.94398e-75
NZ_CP009933.1\|WP_029162286.1\|5449069_5450938_+\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	5.47605e-151
NZ_CP009933.1\|WP_029162289.1\|5452913_5453117_+\|4Fe-4S-binding-protein	gnl\|CDD\|236597	PRK09626, oorD, 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed.	8.8852e-09
NZ_CP009933.1\|WP_029162288.1\|5452119_5452812_+\|hypothetical-protein	gnl\|CDD\|238484	cd00984, DnaB_C, DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.	0.00195271
NZ_CP009933.1\|WP_029163541.1\|5460500_5461439_+\|4-hydroxyphenylacetate-decarboxylase-activase	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	3.56973e-113
NZ_CP009933.1\|WP_029163544.1\|5464132_5465101_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.91238e-145
NZ_CP009933.1\|WP_029162285.1\|5448478_5448982_+\|DUF1097-domain-containing-protein	gnl\|CDD\|368942	pfam06496, DUF1097, Protein of unknown function (DUF1097). This family consists of several bacterial putative membrane proteins.	9.69899e-17
NZ_CP009933.1\|WP_029162290.1\|5453216_5454296_+\|3-methyl-2-oxobutanoate-dehydrogenase-subunit-VorB	gnl\|CDD\|235942	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated.	2.23246e-163
NZ_CP009933.1\|WP_029163538.1\|5456397_5457465_+\|butyrate-kinase	gnl\|CDD\|235099	PRK03011, PRK03011, butyrate kinase; Provisional.	0
NZ_CP009933.1\|WP_029163545.1\|5465093_5465735_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	3.65724e-97
NZ_CP009933.1\|WP_029162284.1\|5447418_5448354_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	1.56925e-21

>NZ_CP009933.1|WP_029162290.1|5453216_5454296_+|3-methyl-2-oxobutanoate-dehydrogenase-subunit-VorB
MSRIFMKGCEAIAEAAVRAGCRFFAGYPITPQNEIPEYFARRLPEVGGNFVQGESEVASVNMVYGAASTGTRAMTSSSSCGISLKSEGISYCASARIPMVYANISRGGPGVGSIQPAQQDYLQATKASGNGGFEMLVFAPATVQEAVDMTYKAFDYAQRDRNPVLILCDGVIGTMMEPVVLPEMKTDEEVAELKEANKDWACIGHKLDYKNRAWIQPGQWLTSKMQSVNEEAAALYASWEKDVQVEEYMVEDAEIVIAAYGISARVSKSAVDILRKEGVKVGLIRPITVHPFPYKAFDNINYDVCKTVLDVEMSIPAQLLHDVEKGVKERCSIDTCLCSGGNIMSREAIIKAIKKINEN
>NZ_CP009933.1|WP_029162289.1|5452913_5453117_+|4Fe-4S-binding-protein
MAKVEIRSESCKSCQYCIKFCPKGVLAVGHEVNSKGYEYIVPVNMDACIGCCMCARMCPDAAIEVYK
>NZ_CP009933.1|WP_029162288.1|5452119_5452812_+|hypothetical-protein
MNIDCKKFTMNKSNFIFVGEAGSGKSEIAINFAKYLVDLNEKPVHFFDMDMTKPMFRSRDVKAEIEEMGIIFHHEEQFFDVPTVVGGVNLLLKDENCYVVMDVGGNDIGARAIGGFAPKVNQDNTVVYYVLNAYRPWSGNLNHIDGTLSSILKMSHIKLDKVHMISNPNNGVSTTVEEVLEGNLKMLEMIGALINIDFTCVNETLYEKVKSKTDIPLMPIHLYLTYPWNQ
>NZ_CP009933.1|WP_029162287.1|5451153_5452059_+|bifunctional-enoyl-CoA-hydratase/phosphate-acetyltransferase
MVFKNFEELIKKVQNSGSKKIAAVVAAQDEHTLQAVFKARKDNIAEPLLIGNKSKIKEILSNLKEDLDDSSIIDVEDDASAAAKAVELVNSNKADFIMKGKIQTADLLKAVVNKEHGLRTGRVMSHFVINEIPNYHKLIVTTDGGMMMYPNVDEKKQIIENAVNTLIDMGYEKPKVAVLAAVEKVNPKMPESVDAGLLKEMNQKGEIKNCIVEGPISYDLTMSKESAEIKGYSSPVVGDADVLIVPNITAGNILGKALVFSAGGKMAGFIVGAKVPIVLTSRGSSAEEKYLSLVLSASAVK
>NZ_CP009933.1|WP_029162286.1|5449069_5450938_+|sigma-54-interacting-transcriptional-regulator
MIKKIGFIASDEKLKDIVVHLFRKEVEQGEIIIDILDPDNMKSQGKMLENRGASAIIARSGGYRHTVGRVNVPVINLKISTLDILYAINKASKYKKDIVIVISDLEYFSYDDWKDVIHEKIIIEKFEDKDNIECIINKYKEIRDKVVVVGGGIPCMYAENLGIDNVSIGASNESICDIFEHAKQLVDSLYEQNYRNEVLNMILDGVHDAVIAIDKNGKIILYNERAQELLKKSSINVMDKNIEEVCPELTFMMDVLKSGVNQYNEIKNLPEIVITANTSVLNIDEQTHGVLCSFQDITKLQNLEKKIRYELNKKGLVARYTFENIIANDPIMKNTVSKAIKIGLDNSTVMIYGESGTGKEMFAQSIHNISNRKKEPFVAINCAAISESLLESELFGYEEGAFTGARKGGKPGLFELAHGGTIFLDEINSMTLNLQAKLLRVLEEKEVMRIGSDYVIPLDVRIIAAANENLKGKIKNGTFRSDLFYRLSILELHIPPLRERKEDIIPLFMHYLTTLSKKVCEFKLESKIEKKIMNYSWPGNVRELRNVVQRYLIFQEVDLDENEMLEDNNELDNDENLLDLKQINKYVEEKVIQMLESSGMSKNEIAKKLGISRTALWRKGKC
>NZ_CP009933.1|WP_029162285.1|5448478_5448982_+|DUF1097-domain-containing-protein
MNEKKLNVLTLALGIALLPPIWAVISPYLGVTTGAVALICAGIFVANGNKVEDGAKISIGFLLGDLWGCIALEAMDMVKLNQNIELFCALFILGGLAVIISSTKLEKIIFLPAWLAGWAITLLIMAPLNMNWGTLPIQIGVSMLMGVWYVGVGVLDFQNLLITIIKK
>NZ_CP009933.1|WP_029162284.1|5447418_5448354_+|NAD(P)H-dependent-oxidoreductase
MKVLGISGGTKNGHNDAMCKEALMGAKEAGAEVEFIRLMDLDIKHCIGCTACVQTLMSGKGNMCVLKDDFDWLLDKMLDADGIVVALPIFEKGVPGIFQTITDRFGPRMDRGNNVIATKIAEEKGGKAPDPRILKDKVISYMGIGGSDWTTKFQCTAAMQALTPMWKVINNETFPWSSGIITEDERVARVHEIGVNIANAAKDISNASYKGEDGVCPHCHSRNFFLDRESTHAICELCGIEGDIKIVDGKVKFEFPKEQLEHAHDTLSGKFKHGDDIGKTISTIADMKKTDKYKQRLESYKSFITGTMPEK
>NZ_CP009933.1|WP_029162283.1|5446504_5447365_+|hypothetical-protein
MSIQFQPMRSLIYVDVVKEDYRHMLKHWLYYHHVPESMAQFGPYVSKYAFYPALPTPPDGERFGTHRMQLTEHYWLVNPLTPEFKNKAMTEYFPIDVLKWQGNVPDDNEVAILEGKETEKMESGDAARSTGGDNGMPPFIWAFVPVSWEEDLKGEGRTMEDGPNYRWQFVMKYPNGVSMEEGDKWFYEEVVPKFQESQDVTRMLTSKIIQSINNCPYQRVVEMWFNCPSGWHRTAVEKAKKIKKPFWAKYDEFPYLKPKFEISSLFLTDIAESDNYTQYRGFIPMR
>NZ_CP009933.1|WP_029162282.1|5444954_5446304_+|hypothetical-protein
MSTRTEMLCKNIEFIGYDDMNGKPGFQMAMQKSGDKYYIYTASFRHNGWNIIDVTDPTHPRNVKWIEGPWLSEDLHDGQGTPKIQIADGIMVTAHGGTMKELHGTEIGLPFWGGIMIWDVKTDPENPILLSKFECKGGAGVHRFFYNGGRYVYVTGNAEGFNGFILRIVDIQDPKNPVEVGRWWADEQFMNNKISSGSARYGSAEALSAPFLHACVVKDDIVYMAYANKGFIMLDVKDKTNPKMLNCLPLNPPFGGGSAGSPIHSVLPLGDRPYVVVTTEGERSRYFSNEITEGLFKKIVTQPMNMLSIVEVTDVSNPSLISIFPYPEVPEGYTHGTNFNVVDGVRIPFGPHNIFDAFGQGVYEKRDDRVYCCHFNAGLRIYDVSDPYVPKEIAYFLPPDPKKDLFNNAEGNLVPGARVAITEDVLVDDRGYIYIDTYMDGLYILRCTV
>NZ_CP009933.1|WP_029162281.1|5443914_5444796_+|LysR-family-transcriptional-regulator
MNDTQIKCFLEIAYEKSFTKAANNLYITQPAISRYMAAFEKELGISLFDRTNKHIKLTEAGEIYYDFFRRFQLEFENTMEKVHSLNCKKQGIIRLGYIVGWSISSFLPSILEKFSKEFPDISVSVECLEINELTKALTTNNLDVILTLDNSLDGIKDINKQKVTEIQKLILYSKFQKLPKKQNLTPYDFKDEIFYVIANEEAHNAELEIRNYCKSYGFVPHLKLSPNMESIFASVENGLGVTFFDTWGKNIINTPSFKYVLLDSNHKVSMAWNKNNKSEIINVLVNEFIRHLK
>NZ_CP009933.1|WP_029162292.1|5455231_5455777_+|2-oxoacid:acceptor-oxidoreductase-family-protein
METNLCVAGFGGQGVMTLGKFLASATCDSTEKNVTFFPSYGAEQRGGTANCFVVISDEMIGAPLGDVMDDLIVMNEPSLDKFLDTLKESGRLFINSSIVKKEITRKDIKIISAPVTELALELGNAKVLNVIMLGVYVGFTEVISPEIVWETIEHKLGKKPKLLPLNKQAFEKGLEIGRSQR
>NZ_CP009933.1|WP_029163538.1|5456397_5457465_+|butyrate-kinase
MSYKILAINPGSTSTKIALYEDEKEIFCKTLEHPVEQIEKYENTADQFDMRKEVVLSFLKQNGYEVKELAAVVGRGGMVPKVKSGAYKVNETMVDRLKNNPVVEHASNLGALIAYEIANSIGVPAYIYDSVRVDELEDIARISGMPDIPRTSTSHALNTRAMAMKVAKKYGKKYSDMNFIVAHLGGGISVNVHRKGKMVDIMADDEGPFSPERAGKVPCNALIDLCYSGKFDKKTTKKKLRGNGGLKAYLNTVDAREVEKMIENGDEKAKLVYEAMAYQVAKGIGELATVVEGKVDAIVITGGIAYSDMITNWIKKRVQFIAPVEIMPGENEMESLALGTLRVLKGEEEAREYVE
>NZ_CP009933.1|WP_029163539.1|5457501_5460195_+|4-hydroxyphenylacetate-decarboxylase-large-subunit
MNVKETKLEDVLKSRGIDMKDAYNISEADIPEAKESTQKLMDIYYTLKVTADMEAAYWYNRTWWENDGEVIEVRRAKAVAASLSHMTPTILPYEKLVMNKTKNVRGAFPFPWVCASFFNAQAEALMNEVDAPAENEADSVSVVGAGGGNVTESYGNVISIAKKFGMRKEEIPVLVKTSKPWEGISVEELSNKYSKMTPGYDQFKNIMESVICMFDSFAIPQGREVINYYMPLQYGFDGIIKLCDEKIAEVMGEAGDDGDFGMSRGYYYAAMKEITKGLSAWCENYSKRAKYLASIETDSEIKANYEKIEEVMGNIAHKKPANFWEAIQMTLCCHFGVVNEDPQSGLSIGRLGQVLQPFYEKDVEDGIMTDEEVIELLELYRIKITCIECFASAGVSGGVLSGNTFNNLSLGGQNYDGLSAVTPLEYLIVEAGMRNQTPQPTLSVLYDEKTPEDFLMKAASCTKLGLGYPAWMNNQTGMNFMMRNYGPEGMDLHDARAWCLGGCLESAPGCFLPLEYNGKVTMIPGGASPTCGTGVHFIGMPKVLELVLTNGLDKRTGKQVYPPHNKKLDSYETMVNQWKEYMELTTDVVNRCNNIQMDIWRKYNMPAVNSLLKPDCFKKGKHIGTMGARYNSCINFESCGTITFVNSLSSIKKNVFDDSKFTIEEMTDAMLNNFGFKTAYETEVFSPDFRESTDKSTKYEKIFAACVNAPKYGNADKYADEIFKAYHYYIYDMTHKFRSYYGKPLYLCQISVSTHGPQGFVTLATADGRLAGTTYSDGSVSAAAGTDKNGIYAIFESATVYDHSMHQNAQMNLKLHPTAVKGINGTRKLLDLVRAYMRKGGFHVQFNVVDSKTLRDAQLTPEKYRELMVRVAGFTQYWCEIGKPIQDEVIYRTEYDK
>NZ_CP009933.1|WP_029163540.1|5460230_5460491_+|4-hydroxyphenylacetate-decarboxylase-small-subunit
MRHYDCKNYINLDCEKGLCALTKGMVPIDGEGSEACPNFKPAEKCGNCKNFCNPDKYGLGTCTGLEKENWAYATCGASACPSYKAE
>NZ_CP009933.1|WP_029163541.1|5460500_5461439_+|4-hydroxyphenylacetate-decarboxylase-activase
MKEKGLIFDIQSFSVHDGPGCRTSVFFIGCPLQCKWCANPESWTKKKHIMVAENVCKWKNGCRSCINACSHDSIKFSEDGKLKISWDTCEKCETFDCVNMCPNNALKQCVKEYTVDELMTILKRDFNNWGSDGGVTFTGGDPLMHHEFLVEVLKKCYDSQIHKAIETSGYAKQEVFLEVLKYIDFAFIDVKNMDREKHKQGTGVYNDLILSNIEALKKSNWNGRLVLRQPTIAGYNDSDENAYKLIEFMNKNSLYEINLLKFHRLGETKWNQLGKEYEYSKYGDMTNEKMEHLQQLYLDNNIACYIGDNTPF
>NZ_CP009933.1|WP_029163542.1|5461770_5462586_-|4-hydroxy-tetrahydrodipicolinate-reductase
MIKVGLIGLGKTGQHIANGILEQNNMQIVAAICSPKSTKKGMDLGKLLENNNTNIKISTSDELESVIFKTKPDVFVDFSTPEATLKNAVTLSKMKINMVIGTTGFTEENITTLQNIAYKFKNGIVYAPNITLGVNVMMLLSNIAATILNNYDFQIIEMHHKNKKDSPSGTALKLSNEIKHGLQAAGVNNKVIPIDAIRAGNIVGKHKLLIVGEHDQIEISHESFSRKAFSLGAINAVNYIYKKSGYYEMKDILDLKKILCEYIDSLNIVSY
>NZ_CP009933.1|WP_029163543.1|5463153_5463810_+|GntR-family-transcriptional-regulator
MSSEYIKKPVYQKISIDIANRILAGDFSAGDKLHGRSSLSSYYNVSPETIRRAIILLNDMDIVEVIKGSGIIIKSVDNCVKFIDKFKDIDSINSSRKEILELIDQKKILEEKIEGKIDELIDYSNRFINTNPFMPYEFKIYKGLNIIGKTVSESKFWQNTGATVVGIRRKGDLILSPGPNAAFQEGDTFLIIAEEDVYGKIKKFIYEDNNIAKLKNKS
>NZ_CP009933.1|WP_029163544.1|5464132_5465101_+|methionine-ABC-transporter-ATP-binding-protein
MIKLVNVNKSFSGDQVLKNINLHVKKGDILGIVGHSGAGKSTLLRCLNALEAYDSGRVTIMGNELKELSEKEVKTMRKKLGMIFQNFNLLNRKNVFDNIALPLEVWNFDKAYIEKKVTNLVKLVGLEDKIYSMPKDLSGGQKQRVGIARALALDPEILLCDEATSALDPNTTKSILELIKKINEELNITVVLVTHQMEVVKEICNRVALMEKGEIKGEGTVEELFLKPDKDLQKLLGENEVLPESGVNIKIFFPKEYSQQCIITSIARELDIDFSIVWGKLEKFRDNVLGSLVINTNEQYKENICKFLDSKSIIWEVIENND
>NZ_CP009933.1|WP_029163545.1|5465093_5465735_+|ABC-transporter-permease
MINEILLPALLETIQMVLISTFLAVAIGFIPAIILVLTDEGGLKPNKFVYKVLDFIINTLRSFPFLILMISIFPLTKLIAGTSIGTNAAIVPLTIAAAPFAARVIESSMKEVDNGVIEAAKSFGSSNWQIIYKVILKEAFPSIILGITLTVISVVGYSAMAGAIGGGGLGNVAINYGYYRFKTDIMIYTVVILIVLVQIFQSLGTFIYRKLSK
>NZ_CP009933.1|WP_029163546.1|5465787_5466609_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKKKILSLILSSLIVLSLAGCGAKSGDASSSTSKDKKVIKVGATPVPHAEILKQVKPILQKEGYDLQIVEFTDYVTPNTSLNEGQLDANFYQHIPYLEQFNKEKHTELSYTVKVHLEPMGVYSNKVKKIADIKDGAEIAIPNDPTNGARALKVLQNAGLIKVKDGELISKADITENKKNIKIKELDAPQLPRVLGDVDAAVINSNYALQANLNPTKDAIAIEPKDSPYSNVLAVRTKDKDKDSIKALSKALNSPEIKKFIEEKYKGSIIPSF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009933_1	1.13\|754291\|20\|NZ_CP009933\|CRT	754291-754310	20	NZ_MG973074	Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence	6950-6969	1	0.95
NZ_CP009933_5	5.3\|813838\|36\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	813838-813873	36	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	210538-210573	2	0.944
NZ_CP009933_3	3.2\|766529\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	766529-766563	35	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	765699-765733	3	0.914
NZ_CP009933_3	3.2\|766529\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	766529-766563	35	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	765715-765749	3	0.914
NZ_CP009933_2	2.22\|759058\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	759058-759092	35	NC_007410	Trichormus variabilis ATCC 29413 plasmid A, complete sequence	37697-37731	6	0.829
NZ_CP009933_2	2.22\|759058\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	759058-759092	35	NZ_CP047243	Trichormus variabilis 0441 plasmid unnamed1, complete sequence	47744-47778	6	0.829
NZ_CP009933_4	4.6\|803843\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	803843-803877	35	NZ_CP047429	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence	33108-33142	6	0.829
NZ_CP009933_4	4.6\|803843\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	803843-803877	35	NZ_CP046373	Spiroplasma citri strain LB 319 plasmid pScpLB319-2, complete sequence	36444-36478	6	0.829
NZ_CP009933_2	2.25\|759255\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	759255-759289	35	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	84481-84515	7	0.8
NZ_CP009933_3	3.30\|768368\|34\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	768368-768401	34	NZ_AP018283	Chondrocystis sp. NIES-4102 plasmid plasmid2 DNA, complete genome	32308-32341	7	0.794
NZ_CP009933_4	4.6\|803843\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	803843-803877	35	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	96891-96925	7	0.8
NZ_CP009933_4	4.6\|803843\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	803843-803877	35	NC_011247	Borrelia duttonii Ly plasmid pl165, complete sequence	136549-136583	7	0.8
NZ_CP009933_2	2.25\|759255\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	759255-759289	35	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	274010-274044	8	0.771
NZ_CP009933_2	2.25\|759255\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	759255-759289	35	NZ_CP007647	Lactobacillus salivarius strain JCM1046 plasmid pMP1046A, complete sequence	11327-11361	8	0.771
NZ_CP009933_2	2.25\|759255\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	759255-759289	35	NZ_CP011404	Lactobacillus salivarius str. Ren plasmid pR1, complete sequence	157289-157323	8	0.771
NZ_CP009933_2	2.25\|759255\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	759255-759289	35	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	177207-177241	8	0.771
NZ_CP009933_2	2.25\|759255\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	759255-759289	35	NC_007930	Lactobacillus salivarius UCC118 plasmid pMP118, complete sequence	11331-11365	8	0.771
NZ_CP009933_2	2.25\|759255\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	759255-759289	35	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	136600-136634	8	0.771
NZ_CP009933_2	2.25\|759255\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	759255-759289	35	NZ_LT604075	Lactobacillus salivarius isolate LPM01 plasmid II	151238-151272	8	0.771
NZ_CP009933_2	2.25\|759255\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	759255-759289	35	CP002037	Lactobacillus salivarius CECT 5713 plasmid pHN3, complete sequence	11540-11574	8	0.771
NZ_CP009933_3	3.1\|766463\|36\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	766463-766498	36	NZ_MG205643	Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence	35297-35332	8	0.778
NZ_CP009933_3	3.19\|767645\|34\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	767645-767678	34	NC_025010	Escherichia coli plasmid pCAPs	925-958	8	0.765
NZ_CP009933_4	4.6\|803843\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	803843-803877	35	MN693109	Marine virus AFVG_25M321, complete genome	4096-4130	8	0.771
NZ_CP009933_5	5.8\|814169\|36\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	814169-814204	36	MH356730	Staphylococcus phage VB-SauS-SA2, complete genome	27066-27101	8	0.778
NZ_CP009933_2	2.25\|759255\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	759255-759289	35	NZ_CP009691	Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence	200998-201032	9	0.743
NZ_CP009933_2	2.25\|759255\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	759255-759289	35	CP037991	Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence	192098-192132	9	0.743
NZ_CP009933_4	4.6\|803843\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	803843-803877	35	NZ_CP028161	Lactococcus lactis subsp. lactis strain 14B4 plasmid p14B4, complete sequence	47468-47502	9	0.743
NZ_CP009933_5	5.2\|813773\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	813773-813807	35	MN693014	Marine virus AFVG_117M46, complete genome	9783-9817	9	0.743
NZ_CP009933_2	2.2\|757741\|36\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	757741-757776	36	MN694661	Marine virus AFVG_250M209, complete genome	9825-9860	10	0.722
NZ_CP009933_4	4.6\|803843\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	803843-803877	35	MT430910	Streptococcus phage smHBZ8, complete genome	3950-3984	10	0.714
NZ_CP009933_4	4.6\|803843\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	803843-803877	35	NC_029030	Streptococcus phage APCM01, complete genome	28581-28615	10	0.714
NZ_CP009933_4	4.6\|803843\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	803843-803877	35	NC_031015	Bacillus phage Claudi, complete genome	3714-3748	10	0.714
NZ_CP009933_4	4.6\|803843\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	803843-803877	35	NC_049964	Bacillus phage KonjoTrouble, complete genome	3783-3817	10	0.714
NZ_CP009933_4	4.6\|803843\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	803843-803877	35	MN082624	Bacillus phage VioletteMad, complete genome	3783-3817	10	0.714
NZ_CP009933_4	4.6\|803843\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	803843-803877	35	NC_049962	Bacillus phage SerPounce, complete genome	3626-3660	10	0.714
NZ_CP009933_5	5.7\|814103\|36\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	814103-814138	36	LT615366	Enterococcus phage VPE25 genome assembly, chromosome: VPE25	2879-2914	10	0.722
NZ_CP009933_5	5.7\|814103\|36\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	814103-814138	36	LT546029	Enterococcus phage VFW genome assembly, chromosome: VFW	2799-2834	10	0.722
NZ_CP009933_5	5.7\|814103\|36\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	814103-814138	36	LT546030	Enterococcus phage VPE25 genome assembly, chromosome: I	2879-2914	10	0.722
NZ_CP009933_5	5.7\|814103\|36\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	814103-814138	36	MT119360	Enterococcus phage nattely, complete genome	2914-2949	10	0.722
NZ_CP009933_5	5.7\|814103\|36\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	814103-814138	36	MT119361	Enterococus phage vipetofem, complete genome	82407-82442	10	0.722
NZ_CP009933_4	4.6\|803843\|35\|NZ_CP009933\|PILER-CR,CRISPRCasFinder,CRT	803843-803877	35	AP014257	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S26-C192, * SEQUENCING IN PROGRESS *	1567-1601	11	0.686

1. spacer 1.13|754291|20|NZ_CP009933|CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 1, identity: 0.95

attaagattttcttcaaata	CRISPR spacer
attaagattttcttcaaatg	Protospacer
*******************.

2. spacer 5.3|813838|36|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 2, identity: 0.944

tctataagtaatatagcattgcttagtacttccata	CRISPR spacer
tctataagtaatatagcattacttaatacttccata	Protospacer
********************.****.**********

3. spacer 3.2|766529|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 3, identity: 0.914

atcatataatcatctttataaatccatactgtttt	CRISPR spacer
aacatatattcatctttatatatccatactgtttt	Protospacer
* ****** *********** **************

4. spacer 3.2|766529|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 3, identity: 0.914

atcatataatcatctttataaatccatactgtttt	CRISPR spacer
aacatatattcatctttatatatccatactgtttt	Protospacer
* ****** *********** **************

5. spacer 2.22|759058|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NC_007410 (Trichormus variabilis ATCC 29413 plasmid A, complete sequence) position: , mismatch: 6, identity: 0.829

aataatagatatctgcaaagaaaatgatatgcaaa--	CRISPR spacer
aataataaatatttgcaaagaaaat--tctgcaactg	Protospacer
*******.****.************  * *****

6. spacer 2.22|759058|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047243 (Trichormus variabilis 0441 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.829

aataatagatatctgcaaagaaaatgatatgcaaa--	CRISPR spacer
aataataaatatttgcaaagaaaat--tctgcaactg	Protospacer
*******.****.************  * *****

7. spacer 4.6|803843|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047429 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence) position: , mismatch: 6, identity: 0.829

acaaattttaatttttctaattcctttataatatt-	CRISPR spacer
tctaattctaatttttgtaattccttta-aatatgc	Protospacer
 * ****.******** *********** *****

8. spacer 4.6|803843|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046373 (Spiroplasma citri strain LB 319 plasmid pScpLB319-2, complete sequence) position: , mismatch: 6, identity: 0.829

acaaattttaatttttctaattcctttataatatt-	CRISPR spacer
tctaattctaatttttgtaattccttta-aatatgc	Protospacer
 * ****.******** *********** *****

9. spacer 2.25|759255|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 7, identity: 0.8

atttat-gtaagaatctattaaaacaattaaaaaaa	CRISPR spacer
-tggataataagaatctttttaaacaattaaaaata	Protospacer
 *  ** .********* ** ************* *

10. spacer 3.30|768368|34|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018283 (Chondrocystis sp. NIES-4102 plasmid plasmid2 DNA, complete genome) position: , mismatch: 7, identity: 0.794

acaaataattaatttgtacaaagctctagtaaaa	CRISPR spacer
acagttgaggaatttatacaaagctctagtcaaa	Protospacer
***. *.*  *****.************** ***

11. spacer 4.6|803843|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 7, identity: 0.8

acaaattttaatttttctaattcctttataatatt-	CRISPR spacer
accaattttcatttttctaattcc-ttgtagtaaac	Protospacer
** ****** ************** **.**.**

12. spacer 4.6|803843|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NC_011247 (Borrelia duttonii Ly plasmid pl165, complete sequence) position: , mismatch: 7, identity: 0.8

acaaattttaatttttctaattcctttataatatt-	CRISPR spacer
accaattttcatttttctaattcc-ttgtagtaaac	Protospacer
** ****** ************** **.**.**

13. spacer 2.25|759255|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 8, identity: 0.771

atttatgtaagaatctattaaaacaattaaaaaaa	CRISPR spacer
aactactaatgaagttattaaaacaattaaaaaaa	Protospacer
* .**.  * *** .********************

14. spacer 2.25|759255|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007647 (Lactobacillus salivarius strain JCM1046 plasmid pMP1046A, complete sequence) position: , mismatch: 8, identity: 0.771

atttatgt---aagaatctattaaaacaattaaaaaaa	CRISPR spacer
---taaatgagaaaaatctattaatacaattaaaaata	Protospacer
   ** .*   **.********** *********** *

15. spacer 2.25|759255|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011404 (Lactobacillus salivarius str. Ren plasmid pR1, complete sequence) position: , mismatch: 8, identity: 0.771

atttatgt---aagaatctattaaaacaattaaaaaaa	CRISPR spacer
---taaatgagaaaaatctattaatacaattaaaaata	Protospacer
   ** .*   **.********** *********** *

16. spacer 2.25|759255|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

atttatgt---aagaatctattaaaacaattaaaaaaa	CRISPR spacer
---taaatgagaaaaatctattaatacaattaaaaaca	Protospacer
   ** .*   **.********** *********** *

17. spacer 2.25|759255|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NC_007930 (Lactobacillus salivarius UCC118 plasmid pMP118, complete sequence) position: , mismatch: 8, identity: 0.771

atttatgt---aagaatctattaaaacaattaaaaaaa	CRISPR spacer
---taaatgagaaaaatctattaatacaattaaaaata	Protospacer
   ** .*   **.********** *********** *

18. spacer 2.25|759255|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 8, identity: 0.771

atttatgt---aagaatctattaaaacaattaaaaaaa	CRISPR spacer
---taaatgagaaaaatctattaatacaattaaaaata	Protospacer
   ** .*   **.********** *********** *

19. spacer 2.25|759255|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT604075 (Lactobacillus salivarius isolate LPM01 plasmid II) position: , mismatch: 8, identity: 0.771

atttatgt---aagaatctattaaaacaattaaaaaaa	CRISPR spacer
---taaatgagaaaaatctattaatacaattaaaaata	Protospacer
   ** .*   **.********** *********** *

20. spacer 2.25|759255|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to CP002037 (Lactobacillus salivarius CECT 5713 plasmid pHN3, complete sequence) position: , mismatch: 8, identity: 0.771

atttatgt---aagaatctattaaaacaattaaaaaaa	CRISPR spacer
---taaatgagaaaaatctattaatacaattaaaaata	Protospacer
   ** .*   **.********** *********** *

21. spacer 3.1|766463|36|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 8, identity: 0.778

tatgtatttaaaattaattttgttgatttaagattg	CRISPR spacer
tgtatatttaaaattaatcttcttgatttaataaat	Protospacer
*.*.**************.** ********* *

22. spacer 3.19|767645|34|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NC_025010 (Escherichia coli plasmid pCAPs) position: , mismatch: 8, identity: 0.765

gatgaatttttagcaagtaccataagttccttta	CRISPR spacer
gtttgaggtttaccaagtaccataagatccttaa	Protospacer
* * .*  **** ************* ***** *

23. spacer 4.6|803843|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to MN693109 (Marine virus AFVG_25M321, complete genome) position: , mismatch: 8, identity: 0.771

acaaattttaatttttctaattcctttataatatt	CRISPR spacer
gcgagttttaattcttctaattccttcatatttgt	Protospacer
.*.*.********.************.*** *  *

24. spacer 5.8|814169|36|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to MH356730 (Staphylococcus phage VB-SauS-SA2, complete genome) position: , mismatch: 8, identity: 0.778

tgtaaccatataattattttaaattctttatcattt	CRISPR spacer
tcaaagtcaataattattttaaattctttttgattt	Protospacer
*  ** .  ******************** * ****

25. spacer 2.25|759255|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009691 (Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence) position: , mismatch: 9, identity: 0.743

atttatgt---aagaatctattaaaacaattaaaaaaa	CRISPR spacer
---tggataaaaagaatctttttaaacaattaaaaata	Protospacer
   *. .*   ******** ** ************* *

26. spacer 2.25|759255|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

atttatgt---aagaatctattaaaacaattaaaaaaa	CRISPR spacer
---tggataaaaagaatctttttaaacaattaaaaata	Protospacer
   *. .*   ******** ** ************* *

27. spacer 4.6|803843|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028161 (Lactococcus lactis subsp. lactis strain 14B4 plasmid p14B4, complete sequence) position: , mismatch: 9, identity: 0.743

acaaattttaatttttctaattcctttataatatt	CRISPR spacer
tgaatttttattttttctaattccttttttgcttt	Protospacer
  ** ***** **************** * .. **

28. spacer 5.2|813773|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to MN693014 (Marine virus AFVG_117M46, complete genome) position: , mismatch: 9, identity: 0.743

cagaacaagtcttataaaaatgattactatagcag	CRISPR spacer
gataacaagttttataaaaatgataactcaggtaa	Protospacer
 * *******.************* ***  .*.*.

29. spacer 2.2|757741|36|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to MN694661 (Marine virus AFVG_250M209, complete genome) position: , mismatch: 10, identity: 0.722

atgtttccaattttaatgtgcttatttactatttcc	CRISPR spacer
tccttctttttttcaatttgcttatttactatttcc	Protospacer
 . **...  ***.*** ******************

30. spacer 4.6|803843|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to MT430910 (Streptococcus phage smHBZ8, complete genome) position: , mismatch: 10, identity: 0.714

acaaattttaatttttctaattcctttataatatt	CRISPR spacer
ttttaccccaatttttctaattcttttttaatatt	Protospacer
 .  *....**************.*** *******

31. spacer 4.6|803843|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NC_029030 (Streptococcus phage APCM01, complete genome) position: , mismatch: 10, identity: 0.714

acaaattttaatttttctaattcctttataatatt	CRISPR spacer
tcttaccccaatttttctaattcttttttaatatc	Protospacer
 *  *....**************.*** ******.

32. spacer 4.6|803843|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NC_031015 (Bacillus phage Claudi, complete genome) position: , mismatch: 10, identity: 0.714

acaaattttaatttttctaattcctttataatatt	CRISPR spacer
ttaacaccccatttttctaattcttttataatttt	Protospacer
 .**  ... *************.******** **

33. spacer 4.6|803843|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NC_049964 (Bacillus phage KonjoTrouble, complete genome) position: , mismatch: 10, identity: 0.714

acaaattttaatttttctaattcctttataatatt	CRISPR spacer
ttaacaccccatttttctaattcttttataatttt	Protospacer
 .**  ... *************.******** **

34. spacer 4.6|803843|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to MN082624 (Bacillus phage VioletteMad, complete genome) position: , mismatch: 10, identity: 0.714

acaaattttaatttttctaattcctttataatatt	CRISPR spacer
ttaacaccccatttttctaattcttttataatttt	Protospacer
 .**  ... *************.******** **

35. spacer 4.6|803843|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to NC_049962 (Bacillus phage SerPounce, complete genome) position: , mismatch: 10, identity: 0.714

acaaattttaatttttctaattcctttataatatt	CRISPR spacer
ttaacaccccatttttctaattcttttataatttt	Protospacer
 .**  ... *************.******** **

36. spacer 5.7|814103|36|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to LT615366 (Enterococcus phage VPE25 genome assembly, chromosome: VPE25) position: , mismatch: 10, identity: 0.722

cttccttttattattttatatttctatccatttagc	CRISPR spacer
ttttcttttattattttatatttatattatatcatg	Protospacer
.**.******************* ***.   *.*

37. spacer 5.7|814103|36|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to LT546029 (Enterococcus phage VFW genome assembly, chromosome: VFW) position: , mismatch: 10, identity: 0.722

cttccttttattattttatatttctatccatttagc	CRISPR spacer
ttttcttttattattttatatttatattatatcatg	Protospacer
.**.******************* ***.   *.*

38. spacer 5.7|814103|36|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to LT546030 (Enterococcus phage VPE25 genome assembly, chromosome: I) position: , mismatch: 10, identity: 0.722

cttccttttattattttatatttctatccatttagc	CRISPR spacer
ttttcttttattattttatatttatattatatcatg	Protospacer
.**.******************* ***.   *.*

39. spacer 5.7|814103|36|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to MT119360 (Enterococcus phage nattely, complete genome) position: , mismatch: 10, identity: 0.722

cttccttttattattttatatttctatccatttagc	CRISPR spacer
ttttcttttattattttatatttatattatatcatg	Protospacer
.**.******************* ***.   *.*

40. spacer 5.7|814103|36|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to MT119361 (Enterococus phage vipetofem, complete genome) position: , mismatch: 10, identity: 0.722

cttccttttattattttatatttctatccatttagc	CRISPR spacer
ttttcttttattattttatatttatattatatcatg	Protospacer
.**.******************* ***.   *.*

41. spacer 4.6|803843|35|NZ_CP009933|PILER-CR,CRISPRCasFinder,CRT matches to AP014257 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S26-C192, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 11, identity: 0.686

acaaattttaatttttctaattcctttataatatt	CRISPR spacer
ttaggaaataatttttctaattcttttacaatagg	Protospacer
 .*..   ***************.****.****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1105503 : 1113620

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029159635.1\|1105503_1106688_+	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	9.5e-32	28.9
WP_029159636.1\|1106920_1107619_+	response regulator transcription factor	W8CYM9	Bacillus_phage	7.3e-32	34.2
WP_029159637.1\|1107785_1108706_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-42	43.9
WP_029159638.1\|1108698_1109454_+	ABC transporter permease	NA	NA	NA	NA
WP_029159639.1\|1109492_1110398_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.5e-18	26.1
WP_029159640.1\|1110542_1111814_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_029159641.1\|1111817_1112570_-	ABC transporter ATP-binding protein	A0A2H4UU96	Bodo_saltans_virus	3.5e-08	28.4
WP_029159642.1\|1112588_1113620_-	sensor histidine kinase	A0A2K9L0Z8	Tupanvirus	8.3e-08	25.2

DBSCAN-SWA_2

1505019 : 1551199

Clostridium_phage(70.97%)

integrase,head,plate,terminase,tail,coat,capsid,portal

attL 1518274:1518290|attR 1540865:1540881

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029159928.1\|1505019_1506072_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_029159929.1\|1506160_1507024_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_169748478.1\|1507045_1507204_-	hypothetical protein	NA	NA	NA	NA
WP_029159930.1\|1507274_1508459_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_029159931.1\|1509128_1510781_-	recombinase family protein	A0A0A7RUB1	Clostridium_phage	1.2e-189	61.1
WP_029159932.1\|1510798_1511200_-	helix-turn-helix transcriptional regulator	A0A0A7RU96	Clostridium_phage	1.4e-35	60.6
WP_029159933.1\|1511431_1511641_+	helix-turn-helix transcriptional regulator	A0A0A7S118	Clostridium_phage	2.8e-11	68.4
WP_158407963.1\|1511701_1511863_+	hypothetical protein	NA	NA	NA	NA
WP_158407964.1\|1511911_1512079_+	hypothetical protein	NA	NA	NA	NA
WP_029159934.1\|1512082_1512865_+	hypothetical protein	X5JAW6	Clostridium_phage	2.5e-41	56.5
WP_169748479.1\|1512898_1513060_+	hypothetical protein	NA	NA	NA	NA
WP_029159935.1\|1513085_1513286_-	KTSC domain-containing protein	NA	NA	NA	NA
WP_029159936.1\|1513515_1514049_+	sigma-70 family RNA polymerase sigma factor	A0A218KDJ1	Bacillus_phage	2.5e-08	26.2
WP_029159937.1\|1514501_1514777_+	hypothetical protein	NA	NA	NA	NA
WP_029159938.1\|1514805_1515270_+	hypothetical protein	A0A0A7RTD8	Clostridium_phage	7.5e-09	63.3
WP_029159939.1\|1515269_1515518_+	hypothetical protein	NA	NA	NA	NA
WP_029159940.1\|1515517_1516669_+	DUF2800 domain-containing protein	A0A0A7S066	Clostridium_phage	3.1e-144	65.6
WP_029159941.1\|1516680_1516863_+	hypothetical protein	NA	NA	NA	NA
WP_029159942.1\|1516894_1517455_+	DUF2815 family protein	A0A0A7RVM4	Clostridium_phage	5.6e-91	88.7
WP_029159943.1\|1517454_1519413_+	DNA polymerase	A0A0A7RTL3	Clostridium_phage	2.7e-294	74.4
1518274:1518290	attL	NA	NA	NA	NA
WP_029159944.1\|1519424_1519754_+	hypothetical protein	NA	NA	NA	NA
WP_029159945.1\|1519853_1520108_+	hypothetical protein	NA	NA	NA	NA
WP_029159946.1\|1520100_1520280_+	hypothetical protein	NA	NA	NA	NA
WP_029159947.1\|1520266_1520518_+	hypothetical protein	NA	NA	NA	NA
WP_029159948.1\|1520548_1520893_+	hypothetical protein	NA	NA	NA	NA
WP_029159950.1\|1521506_1521899_+	hypothetical protein	NA	NA	NA	NA
WP_158407965.1\|1521916_1522078_+	hypothetical protein	NA	NA	NA	NA
WP_029159951.1\|1522113_1522341_+	hypothetical protein	NA	NA	NA	NA
WP_029159952.1\|1522401_1523103_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_029159953.1\|1523105_1523351_+	hypothetical protein	NA	NA	NA	NA
WP_158407966.1\|1523397_1523559_+	hypothetical protein	NA	NA	NA	NA
WP_029159954.1\|1523674_1523968_+	hypothetical protein	NA	NA	NA	NA
WP_029159955.1\|1523985_1524285_+	hypothetical protein	NA	NA	NA	NA
WP_029954538.1\|1524295_1525423_+	DUF4317 family protein	NA	NA	NA	NA
WP_029159956.1\|1525456_1527889_+	hypothetical protein	A0A0A7RTG3	Clostridium_phage	0.0e+00	79.1
WP_029159957.1\|1528166_1528451_+	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	4.4e-20	58.6
WP_029159958.1\|1528440_1529805_+	DEAD/DEAH box helicase	A0A1S7FYY5	Listeria_phage	3.5e-163	62.9
WP_029159959.1\|1529814_1530249_+	hypothetical protein	A0A2H4JCL6	uncultured_Caudovirales_phage	7.3e-06	34.0
WP_169748480.1\|1530335_1530500_+	hypothetical protein	NA	NA	NA	NA
WP_029159960.1\|1530523_1530787_+	hypothetical protein	NA	NA	NA	NA
WP_082085051.1\|1530740_1530923_+	hypothetical protein	A0A0A7S0Q0	Clostridium_phage	3.5e-10	60.3
WP_029159961.1\|1530984_1531239_+	hypothetical protein	NA	NA	NA	NA
WP_029159962.1\|1531351_1532125_+	hypothetical protein	A0A0A8WFS6	Clostridium_phage	2.3e-47	51.7
WP_029159963.1\|1532102_1533383_+\|terminase	PBSX family phage terminase large subunit	A0A1L2JY46	Aeribacillus_phage	7.1e-166	68.3
WP_029159964.1\|1533554_1534907_+\|portal	phage portal protein	I1TJV4	Clostridium_phage	5.3e-79	41.1
WP_029159965.1\|1534899_1536429_+\|capsid	minor capsid protein	A0A0A8WJ84	Clostridium_phage	4.1e-104	42.0
WP_029159966.1\|1536430_1536625_+	hypothetical protein	NA	NA	NA	NA
WP_029159967.1\|1536835_1537072_+	hypothetical protein	NA	NA	NA	NA
WP_029159968.1\|1537114_1537804_+	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_029159969.1\|1537822_1538218_+	hypothetical protein	A0A0K2CNR0	Brevibacillus_phage	2.1e-36	62.6
WP_029159970.1\|1538232_1539279_+\|capsid	major capsid protein	A0A0K2CP76	Brevibacillus_phage	1.6e-144	72.8
WP_029159971.1\|1539303_1539522_+	hypothetical protein	NA	NA	NA	NA
WP_029159972.1\|1539532_1539865_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_029159973.1\|1539861_1540212_+	hypothetical protein	A0A1V0DZW2	Clostridioides_phage	5.1e-10	32.8
WP_029159974.1\|1540211_1540664_+	HK97 gp10 family phage protein	A0A0A7RTT0	Clostridium_phage	6.0e-19	43.4
WP_029159975.1\|1540660_1541095_+	hypothetical protein	J9QE32	Clostridium_phage	1.2e-11	34.0
1540865:1540881	attR	NA	NA	NA	NA
WP_029159976.1\|1541108_1542194_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7S0D2	Clostridium_phage	1.3e-75	45.1
WP_029159977.1\|1542209_1542674_+\|tail	phage tail tube protein	A0A0A7RVT1	Clostridium_phage	1.9e-28	46.8
WP_029159978.1\|1542725_1543145_+	hypothetical protein	NA	NA	NA	NA
WP_029159979.1\|1543396_1544194_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_029159980.1\|1544264_1547366_+	transglycosylase SLT domain-containing protein	A0A1L2JY60	Aeribacillus_phage	4.2e-31	39.2
WP_029159981.1\|1547393_1547798_+	hypothetical protein	A0A0A8WJR4	Clostridium_phage	9.4e-24	45.4
WP_029159982.1\|1547794_1548802_+	hypothetical protein	A0A0A7RWY4	Clostridium_phage	1.5e-57	40.3
WP_029159983.1\|1548798_1549170_+	DUF2577 domain-containing protein	NA	NA	NA	NA
WP_029159984.1\|1549166_1549598_+	DUF2634 domain-containing protein	A0A0A7S0E2	Clostridium_phage	9.7e-19	34.8
WP_029159985.1\|1549587_1550676_+\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	7.6e-44	35.6
WP_052712608.1\|1550680_1551199_+	YmfQ family protein	A0A0A7RUW8	Clostridium_phage	5.2e-19	37.1

DBSCAN-SWA_3

1620322 : 1628385

Diachasmimorpha_longicaudata_entomopoxvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029160051.1\|1620322_1621699_-	HAMP domain-containing histidine kinase	A0A2K9L5I4	Tupanvirus	7.7e-09	23.6
WP_029160052.1\|1621689_1622349_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.8e-24	30.9
WP_029160053.1\|1622432_1623203_-	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA
WP_029160054.1\|1623204_1623966_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA
WP_029160055.1\|1623971_1624679_-	lantibiotic protection ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.3e-56	47.5
WP_029160056.1\|1624851_1625322_-	hypothetical protein	NA	NA	NA	NA
WP_029160057.1\|1625324_1625519_-	helix-turn-helix transcriptional regulator	A0A1V0E021	Clostridioides_phage	2.5e-06	45.2
WP_029160058.1\|1625776_1626925_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.8e-48	30.1
WP_029160059.1\|1626942_1628385_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	7.2e-66	37.7

DBSCAN-SWA_4

2981414 : 3054317

Clostridium_phage(31.25%)

protease,head,terminase,tail,capsid,plate,tRNA,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029161577.1\|2981414_2982632_-\|tail	phage tail protein	A0A0A7RTP0	Clostridium_phage	4.1e-54	63.2
WP_029161576.1\|2982634_2983267_-	DUF2313 domain-containing protein	A0A2H4J1P4	uncultured_Caudovirales_phage	9.8e-28	33.0
WP_029161575.1\|2983259_2984318_-\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	2.9e-48	34.8
WP_029161574.1\|2984310_2984742_-	DUF2634 domain-containing protein	A0A0A7S0E2	Clostridium_phage	1.7e-23	41.0
WP_029161573.1\|2984760_2985186_-	hypothetical protein	A0A1V0DZX0	Clostridioides_phage	8.1e-18	36.4
WP_029161572.1\|2985197_2985512_-	DUF2577 domain-containing protein	NA	NA	NA	NA
WP_029161571.1\|2985526_2986900_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	1.2e-17	46.5
WP_029161570.1\|2986976_2990033_-	transglycosylase SLT domain-containing protein	A0A1L2JY60	Aeribacillus_phage	2.0e-33	40.3
WP_158407975.1\|2990087_2990264_-	hypothetical protein	NA	NA	NA	NA
WP_029161569.1\|2990263_2990689_-	hypothetical protein	NA	NA	NA	NA
WP_029161568.1\|2990785_2991241_-\|tail	phage tail tube protein	A0A0A7RVT1	Clostridium_phage	1.1e-28	46.1
WP_029161567.1\|2991256_2992345_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7S0D2	Clostridium_phage	1.6e-73	42.3
WP_029161566.1\|2992427_2992871_-	hypothetical protein	A0A0A7RTI2	Clostridium_phage	1.6e-08	32.1
WP_029161565.1\|2992867_2993320_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_029161564.1\|2993319_2993670_-	hypothetical protein	A0A1V0DZW2	Clostridioides_phage	2.4e-07	31.9
WP_029161563.1\|2993671_2994010_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_029161562.1\|2994046_2995066_-\|capsid	major capsid protein	S5MA55	Brevibacillus_phage	6.0e-75	45.3
WP_029161561.1\|2995079_2995406_-	hypothetical protein	A0A1X9IGG8	Lactococcus_phage	5.3e-09	40.2
WP_029161560.1\|2995421_2995976_-	phage scaffolding protein	A0A0A7RW68	Clostridium_phage	3.9e-20	36.0
WP_029161559.1\|2996015_2997422_-\|portal	phage portal protein	A0A0A7S074	Clostridium_phage	7.1e-103	42.1
WP_029161558.1\|2997435_2998698_-\|terminase	PBSX family phage terminase large subunit	A0A1L2JY46	Aeribacillus_phage	3.8e-156	65.0
WP_029161557.1\|2998675_2999455_-\|terminase	terminase	A0A1L2JY44	Aeribacillus_phage	2.7e-43	40.7
WP_029161556.1\|2999496_2999676_-	hypothetical protein	A0A0A7RUG6	Clostridium_phage	7.1e-08	55.2
WP_029954887.1\|2999892_3000411_-	hypothetical protein	A0A0A7RVX8	Clostridium_phage	2.3e-27	58.7
WP_029161555.1\|3000751_3001165_+	helix-turn-helix transcriptional regulator	I3VYZ1	Thermoanaerobacterium_phage	1.1e-08	41.1
WP_029161554.1\|3001179_3001620_+	ImmA/IrrE family metallo-endopeptidase	I3VYZ2	Thermoanaerobacterium_phage	1.7e-18	46.2
WP_029161553.1\|3001898_3003212_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_029161552.1\|3003697_3004582_+	DegV family protein	NA	NA	NA	NA
WP_029161551.1\|3004875_3005652_+	LysM peptidoglycan-binding domain-containing protein	A0A141HRV8	Bacillus_phage	1.9e-17	45.6
WP_029161550.1\|3006079_3006850_+	PHP domain-containing protein	NA	NA	NA	NA
WP_029161549.1\|3008011_3008533_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_029161548.1\|3008522_3009437_+	DUF4367 domain-containing protein	NA	NA	NA	NA
WP_052712611.1\|3009907_3010723_+\|protease	protease complex subunit PrcB family protein	NA	NA	NA	NA
WP_029954885.1\|3010773_3011220_-	dUTP diphosphatase	A0A1L2BX65	Bacteriophage	2.5e-33	50.6
WP_029161546.1\|3011379_3012837_-	amino acid permease	NA	NA	NA	NA
WP_029161545.1\|3013237_3013744_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	9.0e-16	39.0
WP_029161544.1\|3013784_3015023_-	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_029161543.1\|3015260_3017480_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.8e-154	40.2
WP_029161542.1\|3017482_3017782_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A218MMY6	uncultured_virus	7.2e-13	41.5
WP_029161541.1\|3017839_3019303_-	repressor LexA	R9VW28	Paenibacillus_phage	6.2e-09	36.8
WP_029161540.1\|3019601_3020294_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_029161539.1\|3020441_3021389_-	sulfite reductase subunit C	NA	NA	NA	NA
WP_029161538.1\|3021408_3022200_-	anaerobic sulfite reductase subunit B	NA	NA	NA	NA
WP_029161537.1\|3022200_3023202_-	anaerobic sulfite reductase subunit A	NA	NA	NA	NA
WP_029161536.1\|3023245_3024016_-	formate/nitrite transporter family protein	NA	NA	NA	NA
WP_029161535.1\|3024252_3025563_-	MFS transporter	NA	NA	NA	NA
WP_029161534.1\|3025852_3027076_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_029161533.1\|3027227_3028454_-	NAD(P)/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	7.6e-08	24.5
WP_029161532.1\|3028474_3028891_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_029161531.1\|3031255_3031516_-	hypothetical protein	NA	NA	NA	NA
WP_029161530.1\|3031675_3033112_-	adenylosuccinate lyase	NA	NA	NA	NA
WP_029161529.1\|3033316_3033556_+	DUF378 domain-containing protein	NA	NA	NA	NA
WP_029161528.1\|3033585_3033846_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_029161527.1\|3034015_3035209_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_029161526.1\|3035421_3035778_-	EamA family transporter	NA	NA	NA	NA
WP_029161525.1\|3035774_3037028_-	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_029161524.1\|3037066_3037933_-	decaprenyl-phosphate phosphoribosyltransferase	NA	NA	NA	NA
WP_007060056.1\|3038169_3038430_-	stage V sporulation protein SpoVS	J9PTX7	Bacillus_phage	9.3e-09	41.0
WP_029161523.1\|3038570_3040112_-	ribonuclease Y	NA	NA	NA	NA
WP_029954880.1\|3040375_3041461_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	3.7e-123	63.1
WP_029161521.1\|3041756_3042344_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_029161520.1\|3042327_3043665_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_029161519.1\|3043761_3046026_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	4.2e-89	49.1
WP_029161518.1\|3046136_3046808_-\|protease	ATP-dependent Clp protease proteolytic subunit	NA	NA	NA	NA
WP_029161517.1\|3046872_3048078_-	aspartate kinase	NA	NA	NA	NA
WP_029161516.1\|3048132_3048405_-	YlmC/YmxH family sporulation protein	NA	NA	NA	NA
WP_029161515.1\|3048473_3049772_-	insulinase family protein	G3MBJ8	Bacillus_virus	3.7e-45	30.8
WP_029161514.1\|3049848_3051963_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_029161513.1\|3052117_3052381_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_029161512.1\|3052496_3053435_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_029161511.1\|3053441_3054317_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA

DBSCAN-SWA_5

3269105 : 3320281

Clostridium_phage(65.38%)

integrase,terminase,tail,capsid,portal

attL 3299566:3299582|attR 3324116:3324132

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029160911.1\|3269105_3271199_-	hypothetical protein	A0A0A7RU66	Clostridium_phage	1.6e-53	36.4
WP_029160912.1\|3271230_3272229_-	hypothetical protein	A0A0A7RW91	Clostridium_phage	5.6e-78	45.7
WP_029160913.1\|3272248_3272494_-	hypothetical protein	NA	NA	NA	NA
WP_029160914.1\|3272513_3274889_-	hypothetical protein	A0A172JHW6	Bacillus_phage	6.3e-27	34.0
WP_029160915.1\|3274910_3276434_-	hypothetical protein	A0A0A7RU28	Clostridium_phage	2.0e-82	38.6
WP_029160916.1\|3276471_3277593_-	hypothetical protein	A0A0A7RU61	Clostridium_phage	7.9e-20	33.3
WP_029160917.1\|3277589_3279398_-	hypothetical protein	A0A0A7RW86	Clostridium_phage	1.7e-35	45.2
WP_029160918.1\|3279416_3279752_-	hypothetical protein	A0A0A7S0S4	Clostridium_phage	8.1e-13	53.7
WP_029160919.1\|3279751_3280843_-	hypothetical protein	NA	NA	NA	NA
WP_029160920.1\|3280832_3281267_-	hypothetical protein	NA	NA	NA	NA
WP_029160921.1\|3281280_3283407_-\|tail	phage tail tape measure protein	D9ZNE6	Clostridium_phage	1.6e-109	47.5
WP_029160922.1\|3283456_3283675_-	hypothetical protein	A0A0A7RW80	Clostridium_phage	7.6e-12	55.4
WP_029160923.1\|3283640_3284063_-	hypothetical protein	A0A0A7S0S0	Clostridium_phage	2.0e-37	52.5
WP_029160924.1\|3284106_3284994_-	hypothetical protein	A0A0A7RTZ9	Clostridium_phage	2.6e-58	45.3
WP_029160925.1\|3285024_3285375_-	hypothetical protein	NA	NA	NA	NA
WP_029160926.1\|3285386_3285734_-	hypothetical protein	A0A0A7RU51	Clostridium_phage	8.0e-32	59.6
WP_029160927.1\|3285738_3286137_-	hypothetical protein	NA	NA	NA	NA
WP_029160928.1\|3286137_3286419_-	hypothetical protein	A0A0A7S0R4	Clostridium_phage	2.4e-18	51.5
WP_029160929.1\|3286431_3286635_-	hypothetical protein	NA	NA	NA	NA
WP_029160930.1\|3286706_3287738_-\|capsid	major capsid protein	A0A1J1GG50	Clostridium_phage	5.1e-90	50.1
WP_029160931.1\|3287821_3288157_-	hypothetical protein	D9ZND5	Clostridium_phage	5.6e-14	41.4
WP_029160932.1\|3288210_3288849_-	phage scaffolding protein	A0A0A7RW68	Clostridium_phage	3.8e-35	51.1
WP_029160933.1\|3288920_3289883_-	hypothetical protein	A0A0A7RU06	Clostridium_phage	8.1e-74	44.6
WP_029160934.1\|3289869_3291339_-\|portal	phage portal protein	A0A2H4J031	uncultured_Caudovirales_phage	1.5e-140	51.0
WP_052712590.1\|3291338_3292868_-\|terminase	phage terminase large subunit	W8EEU4	Geobacillus_phage	4.1e-120	45.7
WP_029160936.1\|3292923_3293499_-\|integrase	tyrosine-type recombinase/integrase	M4W8M4	Mycobacterium_phage	2.6e-11	29.0
WP_029160937.1\|3293653_3294142_-	hypothetical protein	NA	NA	NA	NA
WP_029160938.1\|3294188_3294842_-	hypothetical protein	NA	NA	NA	NA
WP_029160939.1\|3295029_3295365_-	DUF4236 domain-containing protein	Q331S8	Clostridium_botulinum_C_phage	6.6e-07	73.8
WP_029160940.1\|3295441_3295621_-	DUF1040 family protein	NA	NA	NA	NA
WP_029160941.1\|3295708_3295999_-	hypothetical protein	NA	NA	NA	NA
WP_029160942.1\|3296029_3296290_-	hypothetical protein	NA	NA	NA	NA
WP_029160943.1\|3296361_3296955_-	hypothetical protein	NA	NA	NA	NA
WP_029160944.1\|3297037_3297643_-	hypothetical protein	NA	NA	NA	NA
WP_029160945.1\|3297653_3298037_-	hypothetical protein	NA	NA	NA	NA
WP_029160946.1\|3298153_3298354_-	hypothetical protein	NA	NA	NA	NA
WP_029160947.1\|3298385_3298916_-	hypothetical protein	NA	NA	NA	NA
WP_029160948.1\|3298940_3299126_-	hypothetical protein	NA	NA	NA	NA
WP_029160949.1\|3299162_3299765_-	hypothetical protein	NA	NA	NA	NA
3299566:3299582	attL	NA	NA	NA	NA
WP_029160950.1\|3299861_3300089_-	hypothetical protein	NA	NA	NA	NA
WP_029160951.1\|3300182_3300554_-	hypothetical protein	NA	NA	NA	NA
WP_029160952.1\|3300618_3301419_-	hypothetical protein	NA	NA	NA	NA
WP_029160953.1\|3301646_3304751_-	hypothetical protein	NA	NA	NA	NA
WP_029160954.1\|3304812_3306012_-	hypothetical protein	Q331U0	Clostridium_botulinum_C_phage	2.3e-41	38.5
WP_029160955.1\|3306482_3306776_-	hypothetical protein	NA	NA	NA	NA
WP_029160956.1\|3307247_3307436_-	hypothetical protein	NA	NA	NA	NA
WP_029160957.1\|3307940_3308372_-	hypothetical protein	NA	NA	NA	NA
WP_029954813.1\|3308374_3309214_-	ParM/StbA family protein	Q0SPH6	Clostridium_phage	9.1e-29	33.1
WP_029160959.1\|3309569_3310181_-	transcriptional regulator	NA	NA	NA	NA
WP_029160960.1\|3310290_3310983_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_029160961.1\|3311111_3311444_-	hypothetical protein	NA	NA	NA	NA
WP_029160962.1\|3311436_3311862_-	hypothetical protein	NA	NA	NA	NA
WP_029160963.1\|3312098_3312449_-	hypothetical protein	NA	NA	NA	NA
WP_029160964.1\|3312424_3312832_-	hypothetical protein	NA	NA	NA	NA
WP_029160965.1\|3313036_3313270_+	helix-turn-helix transcriptional regulator	A0A139ZPH0	Marinitoga_camini_virus	3.8e-09	42.9
WP_029160966.1\|3313388_3313571_-	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_029160967.1\|3313764_3315285_-	hypothetical protein	A0A2P1MXU8	Staphylococcus_phage	2.5e-13	31.6
WP_029160968.1\|3315746_3316205_-	hypothetical protein	NA	NA	NA	NA
WP_029160969.1\|3316215_3317688_-	hypothetical protein	NA	NA	NA	NA
WP_158407979.1\|3317869_3318046_-	hypothetical protein	NA	NA	NA	NA
WP_029160970.1\|3319010_3319265_-	hypothetical protein	NA	NA	NA	NA
WP_029160971.1\|3319264_3320281_-\|integrase	tyrosine-type recombinase/integrase	B3GVW7	Streptococcus_phage	3.4e-06	25.8
3324116:3324132	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3716753 : 3722615

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029160730.1\|3716753_3718256_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.1e-64	44.9
WP_029160731.1\|3718280_3718892_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.3e-21	37.2
WP_029160732.1\|3718879_3719875_-	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	1.5e-67	45.0
WP_029160733.1\|3719935_3721375_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.1e-55	34.3
WP_029160734.1\|3721423_3722134_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SE76	Cyanophage	5.5e-43	42.8
WP_029160735.1\|3722135_3722615_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	7.5e-28	46.2

DBSCAN-SWA_7

3988909 : 4040623

Clostridium_phage(40.0%)

protease,integrase,transposase

attL 3977225:3977240|attR 4046589:4046604

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3977225:3977240	attL	NA	NA	NA	NA
WP_029162710.1\|3988909_3989878_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_029162711.1\|3989966_3991025_-	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_029162712.1\|3991072_3991471_-	hypothetical protein	NA	NA	NA	NA
WP_029162713.1\|3991587_3991920_+	hypothetical protein	NA	NA	NA	NA
WP_029162714.1\|3991933_3992371_-	transcriptional repressor	NA	NA	NA	NA
WP_029162715.1\|3992420_3992972_-	manganese efflux pump	NA	NA	NA	NA
WP_029162716.1\|3993087_3993807_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_029162717.1\|3993816_3995442_-	PDZ domain-containing protein	NA	NA	NA	NA
WP_029955245.1\|3995646_3996531_-	SLAP domain-containing protein	NA	NA	NA	NA
WP_029162719.1\|3996729_3997092_-	hypothetical protein	NA	NA	NA	NA
WP_029162720.1\|3997277_3998894_-	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.5e-51	27.1
WP_029162721.1\|3999000_3999909_-	DMT family transporter	NA	NA	NA	NA
WP_029955247.1\|4000057_4000858_-	SLAP domain-containing protein	NA	NA	NA	NA
WP_029162723.1\|4000976_4002161_-	ABC transporter permease	NA	NA	NA	NA
WP_052712617.1\|4002157_4003321_-	ABC transporter permease	NA	NA	NA	NA
WP_029162725.1\|4003348_4004398_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_029162726.1\|4004709_4006878_-	cell wall-binding repeat-containing protein	NA	NA	NA	NA
WP_148552426.1\|4007111_4008848_+	WG repeat-containing protein	NA	NA	NA	NA
WP_029162728.1\|4008897_4012209_-	cell wall-binding repeat-containing protein	NA	NA	NA	NA
WP_029162729.1\|4012335_4013529_-	TolC family protein	NA	NA	NA	NA
WP_029162730.1\|4013559_4014756_-	TolC family protein	NA	NA	NA	NA
WP_029162731.1\|4014794_4015952_-	TolC family protein	NA	NA	NA	NA
WP_029162732.1\|4015966_4016398_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_046066024.1\|4016577_4020099_-	cell wall-binding repeat-containing protein	A0A0A8WJG0	Clostridium_phage	2.0e-16	30.7
WP_082085121.1\|4020575_4021841_+	cell wall-binding repeat-containing protein	A0A0A8WJG0	Clostridium_phage	1.4e-17	31.2
WP_029159037.1\|4021897_4022404_-	hypothetical protein	NA	NA	NA	NA
WP_029159038.1\|4022763_4023624_+\|integrase	tyrosine-type recombinase/integrase	S5M9V8	Brevibacillus_phage	1.5e-18	27.0
WP_029159039.1\|4023642_4024446_+	hypothetical protein	NA	NA	NA	NA
WP_029159040.1\|4025159_4027841_+	hypothetical protein	NA	NA	NA	NA
WP_029159041.1\|4028114_4028477_+	hypothetical protein	NA	NA	NA	NA
WP_029159042.1\|4031748_4032312_-\|transposase	transposase	NA	NA	NA	NA
WP_046066176.1\|4032982_4033828_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_029159044.1\|4033961_4034267_-\|integrase	phage integrase N-terminal SAM-like domain-containing protein	NA	NA	NA	NA
WP_029159045.1\|4034275_4034881_-	hypothetical protein	NA	NA	NA	NA
WP_029159046.1\|4035348_4038291_-	hypothetical protein	NA	NA	NA	NA
WP_029159047.1\|4038846_4039662_-	hypothetical protein	NA	NA	NA	NA
WP_029159048.1\|4039759_4040623_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.5e-15	28.6
4046589:4046604	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4966699 : 4974742

uncultured_virus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029162916.1\|4966699_4967425_+	TVP38/TMEM64 family protein	M1Q152	Streptococcus_phage	1.7e-07	25.7
WP_029162915.1\|4967436_4968072_-	TIGR01906 family membrane protein	NA	NA	NA	NA
WP_029162914.1\|4968436_4968721_+	co-chaperone GroES	A0A221S4A8	uncultured_virus	5.1e-16	43.6
WP_007061535.1\|4968741_4970373_+	chaperonin GroEL	A0A219YK78	uncultured_virus	1.3e-151	54.9
WP_029162913.1\|4970440_4971178_-\|tRNA	tRNA 2-thiocytidine biosynthesis protein TtcA	A0A2H4UTJ2	Bodo_saltans_virus	8.0e-05	26.5
WP_029162912.1\|4971677_4973132_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.5e-98	42.5
WP_029162911.1\|4973209_4974742_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.5e-26	34.7

DBSCAN-SWA_9

5610365 : 5636756

Erysipelothrix_phage(22.73%)

protease,head,terminase,tail,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026366502.1\|5610365_5610722_+	hypothetical protein	S5M5X1	Brevibacillus_phage	1.4e-07	57.1
WP_026366503.1\|5610724_5611852_+	DUF2800 domain-containing protein	S5MUB5	Brevibacillus_phage	2.8e-110	57.2
WP_026366504.1\|5611866_5612388_+	DUF2815 family protein	A0A0A7RVM4	Clostridium_phage	2.3e-62	66.7
WP_026366505.1\|5612432_5614385_+	DNA polymerase	S5M5X4	Brevibacillus_phage	1.2e-225	60.6
WP_026366506.1\|5617042_5617318_+	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	7.8e-22	56.8
WP_026366507.1\|5617314_5618664_+	DEAD/DEAH box helicase	S5MA26	Brevibacillus_phage	3.0e-167	62.8
WP_026366508.1\|5618675_5619155_+	hypothetical protein	NA	NA	NA	NA
WP_026366509.1\|5619275_5620004_+	hypothetical protein	NA	NA	NA	NA
WP_026366510.1\|5620310_5620613_+	hypothetical protein	NA	NA	NA	NA
WP_026366511.1\|5620628_5621021_+	HNH endonuclease	M1PLL8	Streptococcus_phage	3.8e-22	43.6
WP_026366513.1\|5621258_5622503_+	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	1.7e-148	61.6
WP_026366514.1\|5622571_5622883_+	hypothetical protein	A0A2K5B282	Erysipelothrix_phage	1.4e-30	62.7
WP_026366515.1\|5623118_5623826_+	hypothetical protein	A0A2K5B280	Erysipelothrix_phage	3.7e-15	30.3
WP_026366516.1\|5623860_5624229_-	DUF1413 domain-containing protein	NA	NA	NA	NA
WP_026366517.1\|5624347_5624818_+\|terminase	phage terminase small subunit P27 family	Q6DMU4	Streptococcus_phage	1.2e-57	69.9
WP_026366518.1\|5624820_5626371_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	1.3e-227	72.3
WP_026366519.1\|5626382_5627663_+\|portal	phage portal protein	Q8W629	Enterobacteria_phage	3.6e-69	39.6
WP_026366520.1\|5627655_5628495_+\|protease	Clp protease ClpP	A0A0C5AEN1	Bacteriophage	1.5e-55	45.4
WP_026366521.1\|5628491_5629775_+\|capsid	phage major capsid protein	A0A1B1IQC5	uncultured_Mediterranean_phage	1.2e-48	33.5
WP_026366522.1\|5629880_5630300_+	hypothetical protein	NA	NA	NA	NA
WP_026366523.1\|5630455_5630917_+	hypothetical protein	NA	NA	NA	NA
WP_026366524.1\|5630975_5631548_+\|head,tail	phage head-tail connector protein	C7BGH1	Burkholderia_phage	1.7e-07	28.9
WP_026366525.1\|5631544_5631871_+\|head	phage head closure protein	A6M954	Geobacillus_virus	1.9e-14	41.7
WP_026366526.1\|5631863_5632244_+	HK97 gp10 family phage protein	H0USW9	Bacillus_phage	3.1e-13	30.7
WP_029954231.1\|5632240_5632561_+	hypothetical protein	E2ELJ0	Clostridium_phage	5.5e-19	46.6
WP_026366527.1\|5632582_5633413_+	hypothetical protein	A0A2H4J8F3	uncultured_Caudovirales_phage	2.3e-32	45.1
WP_026366528.1\|5633438_5633723_+	hypothetical protein	A0A2H4JBA8	uncultured_Caudovirales_phage	9.6e-07	37.3
WP_029954232.1\|5636213_5636756_+	hypothetical protein	A0A2K9V3N5	Faecalibacterium_phage	5.7e-24	43.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009933

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection