CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009035	Xanthomonas citri pv. citri strain AW15 plasmid pXCAW19, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP009037	Xanthomonas citri pv. citri strain AW15 chromosome, complete genome	8 crisprs	cas3,RT,WYL,DEDDh,csa3,DinG,cas8c,cas7,cas4,cas1	3	12	5	4
NZ_CP009036	Xanthomonas citri pv. citri strain AW15 plasmid pXCAW58, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009037_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009037_1

27399-27697

Orphan

Consensus_repeat	Method
TGGAAACGGTCAACGGC	PILER-CR
TGGAAACGGTCAATGGCAGCATC	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_CP009037_1

>merge|NZ_CP009037|1|27399-27697|PILER-CR,CRISPRCasFinder
TGGAAACGGTCAACGGCTCCATCGAGATCGGTGCCGGTGCGCAAACCAAGAACGTGGAAACCGTCAACGGCGGCATCCGCATCGGCGACAACGCGCGTACCGGTGGCGTGGAAACGGTCAACGGCTCGATCACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGCTGGAAACGGTCAATGGCAGCATCCTCGCCGAGCGCGGCAGCCAGATCAGTGGCGGCGTGGAAACGGTCAACGGCAGCATCGGGCTGGTGGGAACCGAGCTCGGCAAGGGCATCGAGACGGTCAATGGCGACATC

>NZ_CP009037|1|1|27399-27580|PILER-CR
TGGAAACGGTCAACGGC	TCCATCGAGATCGGTGCCGGTGCGCAAACCAAGAACG
TGGAAACCGTCAACGGC	GGCATCCGCATCGGCGACAACGCGCGTACCGGTGGCG
TGGAAACGGTCAACGGC	TCGATCACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGC
TGGAAACGGTCAATGGC

>NZ_CP009037|1|1|27399-27697|CRISPRCasFinder
TGGAAACGGTCAACGGCTCCATC	GAGATCGGTGCCGGTGCGCAAACCAAGAACG
TGGAAACCGTCAACGGCGGCATC	CGCATCGGCGACAACGCGCGTACCGGTGGCG
TGGAAACGGTCAACGGCTCGATC	ACGCTGGGCCAGAAAGTGACGGTGTCCGGCGGGC
TGGAAACGGTCAATGGCAGCATC	CTCGCCGAGCGCGGCAGCCAGATCAGTGGCGGCG
TGGAAACGGTCAACGGCAGCATC	GGGCTGGTGGGAACCGAGCTCGGCAAGGGCA
TCGAGACGGTCAATGGCGACATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009037.1\|WP_005912457.1\|17329_17920_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274398
NZ_CP009037.1\|WP_011050033.1\|32717_33770_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP009037.1\|WP_011052848.1\|38338_39373_-\|glycoside-hydrolase-family-43-protein	unknown	unknown	gnl\|CDD\|350131
NZ_CP009037.1\|WP_005922831.1\|35488_36001_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_011052850.1\|37045_37399_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|377727
NZ_CP009037.1\|WP_003482177.1\|21971_22664_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP009037.1\|WP_005912470.1\|25881_27117_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP009037.1\|WP_011052849.1\|37457_37991_-\|lipocalin-family-protein	unknown	unknown	gnl\|CDD\|336958
NZ_CP009037.1\|WP_011050028.1\|23092_24085_+\|D-2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240646
NZ_CP009037.1\|WP_005927226.1\|24250_25777_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223864
NZ_CP009037.1\|WP_011050026.1\|18130_19258_-\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP009037.1\|WP_003482171.1\|22772_23093_+\|DUF1820-family-protein	unknown	unknown	gnl\|CDD\|370154
NZ_CP009037.1\|WP_005927202.1\|16700_17330_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_015462682.1\|30947_32081_-\|glycoside-hydrolase-family-5-protein	unknown	unknown	gnl\|CDD\|365907
NZ_CP009037.1\|WP_015471374.1\|28095_29892_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349910
NZ_CP009037.1\|WP_040145186.1\|36269_36527_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_011050027.1\|20412_21753_-\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|367457
NZ_CP009037.1\|WP_011050031.1\|30211_30655_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379323
NZ_CP009037.1\|WP_005927217.1\|19441_20143_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP009037.1\|WP_162197921.1\|35324_35483_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009037.1\|WP_005912457.1\|17329_17920_+\|hypothetical-protein	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	0.00183523
NZ_CP009037.1\|WP_011050033.1\|32717_33770_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	2.75626e-59
NZ_CP009037.1\|WP_011052848.1\|38338_39373_-\|glycoside-hydrolase-family-43-protein	gnl\|CDD\|350131	cd18619, GH43_CoXyl43_like, Glycosyl hydrolase family 43 protein such as metagenomic beta-xylosidase/alpha-L-arabinofuranosidase CoXyl43. This glycosyl hydrolase family 43 (GH43) subgroup belongs to the GH43_AXH-like subgroup which includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), alpha-1,2-L-arabinofuranosidase 43A (arabinan-specific; EC 3.2.1.-), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. Included in this subfamily is the metagenomic beta-xylosidase/alpha-L-arabinofuranosidase CoXyl43, which shows synergy with Trichoderma reesei cellulases and promotes plant biomass saccharification by degrading xylo-oligosaccharides, such as xylobiose and xylotriose, into the monosaccharide xylose. Studies show that the hydrolytic activity of CoXyl43 is stimulated in the presence of calcium. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	0
NZ_CP009037.1\|WP_011052850.1\|37045_37399_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|377727	pfam06877, RraB, Regulator of ribonuclease activity B. This family of proteins regulate mRNA abundance by binding to RNaseE and inhibiting its endonucleolytic activity. A subset of these proteins are predicted to function as immunity proteins.	2.68467e-22
NZ_CP009037.1\|WP_003482177.1\|21971_22664_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	1.19314e-25
NZ_CP009037.1\|WP_005912470.1\|25881_27117_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	3.19413e-91
NZ_CP009037.1\|WP_011050028.1\|23092_24085_+\|D-2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	7.84237e-145
NZ_CP009037.1\|WP_005927226.1\|24250_25777_-\|PDZ-domain-containing-protein	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	5.94443e-128
NZ_CP009037.1\|WP_011050026.1\|18130_19258_-\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	2.18101e-23
NZ_CP009037.1\|WP_003482171.1\|22772_23093_+\|DUF1820-family-protein	gnl\|CDD\|370154	pfam08850, DUF1820, Domain of unknown function (DUF1820). This family includes small functionally uncharacterized proteins around 100 amino acids in length.	1.29038e-51
NZ_CP009037.1\|WP_015462682.1\|30947_32081_-\|glycoside-hydrolase-family-5-protein	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	2.78746e-58
NZ_CP009037.1\|WP_015471374.1\|28095_29892_+\|M28-family-peptidase	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	1.74187e-122
NZ_CP009037.1\|WP_011050027.1\|20412_21753_-\|outer-membrane-protein-transport-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	9.91943e-135
NZ_CP009037.1\|WP_011050031.1\|30211_30655_-\|PepSY-domain-containing-protein	gnl\|CDD\|379323	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain. This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase & Bacillus subtilis YPEB.	6.45133e-05
NZ_CP009037.1\|WP_005927217.1\|19441_20143_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	1.29017e-07
NZ_CP009037.1\|WP_011052849.1\|37457_37991_-\|lipocalin-family-protein	gnl\|CDD\|336958	pfam08212, Lipocalin_2, Lipocalin-like domain. Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The structure is an eight-stranded beta barrel.	1.39452e-53

>NZ_CP009037.1|WP_005912470.1|25881_27117_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MWLAVGVLACTLLGSMGASAQSQRETERKLQQLRDELKTISADRRELEGKRGTAAQQLRQADEKVAKTARALSETEAAMRAQEQHLSTLQQERAQLQRGLQNQRAQLAALLRAADQVGRNAPLKVLLSQDTVGDATRMLADHRYVQNARAQRIHALTTQLDALATVEQDIATRRQALDAARAQQKAQAATLQKDRSQQAATVAQLDDRYKQRAEREKAIGQDAKALEQLLANLRAAAAKAEAERRAAARRAAAEAAAQAKRSKTERSDRPGKTPPKVVANAPAPKVGGLSWPVAGNLLARFNATLPDGHTSKGVLIGAPKGTTVTAVADGTVVFSDWMTGYGMILIVDHGNGYMSLYAHNDTLLRDAGATIKRGDAVAKVGSSGGQGVPALYFELRRNGQPVDPSSWLQRR
>NZ_CP009037.1|WP_005927226.1|24250_25777_-|PDZ-domain-containing-protein
MRVAVLSVALSLALFASPGWAQKAGPAAAQASADDPEANEAAVSKVPLDEIRRFVAVYNAVKQAYVDPVEDKKLMHAAVRGLLSDLDPHSTYFDKEDAEAFDEQATGAYDGIGVELLQQQDNTLKVIAPIDDTPAARAGIRAGDVIVAIDGKPIDASKAMEPLRGESGSKVVLTIMRDKMPKPFDVTLQRETIRVASVRSKLLEPGFGYIRISTFQADTGADFQKNLKQLQAGGKLRGLVLDLRSNPGGLLTSAVQVADDLLDKGNIVSTRGRISISDAKFDATPGDLLNGAPVVVLVDAGSASASEVLAGALRDNKRARIIGSRTFGKGSVQTVLPLDNGDSVKLTTARYYTPSGKSIQASGIVPDVLLTPEPQPGDADVPASLTDYSEATLPGHLRGDDEGEEGYSAGDVLPGDGPITEALAELKQPGAAAKAQAARKAKAQAAQKAKAANKTGAEPKPAAARPATTDKPRSAEPAGKAKPATTPPAPAEPVQPTTPTDKPAEPVN
>NZ_CP009037.1|WP_011050028.1|23092_24085_+|D-2-hydroxyacid-dehydrogenase-family-protein
MRIVVPDDYQGAVAQLPCLQQLQDHQVQVLGALDAELDARAACLADADALVLIRERTRVDAALLQRLPRLKLISQTGRVGAHVDVAACTALGVAVAEGVGSPVAPAELTWALILSASRRLTDYQHALQQGRWQALGDPGLGRVLHGRTLGIWSYGRIGQRVAGFGRAFGMQVVVWGGEASCAQAARDGFAVAGSREDLFERSDVLSLHRRLTAQTRHDVTAQDLARMRADALLVNTSRAELIAPGALLAALDAGRPAQAALDVFEHEPVLDPRDPLLRHARVLATPHLGYVERDSYALYFDAAFDNVLAFAAGTPRNLVNPEVLATTQRV
>NZ_CP009037.1|WP_003482171.1|22772_23093_+|DUF1820-family-protein
MSKSLYKVTFLNHGKVYELYAREVTGSHLWGFNQIGELVFDVHDGLVVDPTEERLREEFGNTRTLHLPMQSIVRIEEVEKKGQSVIRDATTGDKVVTPFPSPIKPR
>NZ_CP009037.1|WP_003482177.1|21971_22664_+|rhomboid-family-intramembrane-serine-protease
MFVSLPSRKKPTPRWAVPLLFATVWLAYLWSISRPGEARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGTPDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPAFGMVAWSAHIAGFVFGIVYGLYVRAAIARRLRKRHGF
>NZ_CP009037.1|WP_011050027.1|20412_21753_-|outer-membrane-protein-transport-protein
MSTASTLSRATLLAVGIAGVLAVGQAHGAAFQLKENSAKGLGRAFAGSGSAPDDASIIATNPAGMRQLDGRLFQADVSAISFSAKFQPDTAAYANGAPVSGGNGGDAGMIAPVPAMYFHVPFGENDNMHLGTSLTVPFGFKTEYDRDWVGRYHGTKTELQAIDFNVAFSYDVNPYVSFGASVFAERLDIDLANAVDFGSVLAARRVPGFAPGSADGYSRIKGDSTEVGFTLGGLFSIDENTHIGFSYRSQVEHKITDGTADFTVPGSAAAVLSVAAPGTFVDTKGRATVKLPASATASFTHNVNEQWSIMADVTRTAWSKFDQVTVDFASNQPDSVLDFSYRDTTFASIGADYRLSDTVTLRGGLAYDQTPTTAEHRDVRVPDASRKWVSLGMSWRPSAQTEYNFGYTHLFTSDPTSDTRSATGDRLAGSYDVKGDVLAASINYKF
>NZ_CP009037.1|WP_005927217.1|19441_20143_-|2OG-Fe(II)-oxygenase
MSQPDFIQITDNAIAHEDCVAIVQRMRQSQQLHPGRIGGGVFPDLKHSRDLRISGMAEWAEVENRLQQAVFEGVLTYLRQYPQALISPLMLQVTTADGRPHRLVAEDIVQMSDQALGDLARTCLRPGAINLQWYTADQGGYPYWHCELYPRDANADTLHRHLLWTLYLNDDFAQGETEFLFQQRKARPRTGSLLIAPTAFTHTHRGNRPVGGDKFIATSWILFQSAQALYGGE
>NZ_CP009037.1|WP_011050026.1|18130_19258_-|PA0069-family-radical-SAM-protein
MQKNSFPSASAAAERDVRSSRTVIKGRGTTAYVPGRFSVTTAVEIDDGWGALDADGKTAMRPKTVVAEEIARSIISRNNSPDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFETRIFAKPNAAALLRAEIARPSYQCSPIALGINTDAYQPAERRLRISRQCLEVLAEARHPVSFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALHAAGVPVGVLVAPVIPMINDKELERILDAAAAHGARSAGYVLLRLPHELTQLWREWLELHYPDRAKHVMSLVQQMRGGKDYDSRFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTTHFRPPRPDTPQLNLF
>NZ_CP009037.1|WP_005912457.1|17329_17920_+|hypothetical-protein
MRTFRIRGRRLGLRFRETVLLAGTLACSVLFVATQRQIGLLCYAVAPILLLAFFVLQADLVWRGHKTAGAAFIMAVAAWLTFSVLATYAFSGLVHTHNFLGTWLKALLGAGFFAVLFSLSVLLARKRSVSLYWYLAGSLAVVIAVAAVHPENSGDITVNCERGSCAAGIIAFWPGAFQAADGKRPISVVLPHSGGD
>NZ_CP009037.1|WP_005927202.1|16700_17330_+|hypothetical-protein
MSQADADQFAIYSSVYRSYGNIGTLNVKIDLANGTVAPSSVSRMVEVASDESSAFASAFDVRREGATRQQVIQWLEKNDWQVPNTGENFIFFIQQVLSNAYKWRSSEDYSIRIDTTFNDKSRAIFAYDSAKRAIVYVEAYDSAGNLIGTSSSEPINVDYSSYESPGAASRPDYQRGIDWLTSSGAATISGGTVTVGSGTVLVGDVVQVK
>NZ_CP009037.1|WP_015471374.1|28095_29892_+|M28-family-peptidase
MPRKILLCLAATLALAGCKREPADAPSAPAAQTPTDSAPSAPVSRHTFSPDMTTGDFAELVKTLASDDFEGRGPGTPGEEKTVTYIRDQMQRIGLQPGNGDSWFQEVPMVETTADASTAPSLRSGEQTRTLAFGTDIVVGTRTGQAEVKLDNSELVFVGYGVDAPEQQWNDYAGQEWKGKTVVMFVNDPGFHTDDAKLFDGKRMNYYGRWTYKFEEAARKGAAAALIVHDTPGASYGWDVVKNSWSGPQYDLPAKDDPDPRLPVQGWISAETARQLFANAGLDLTQAYKDASKRGFKPVPLKASWSVDLKSTIAAKTSRNVVGVLPGTSHADEAVLYMAHWDHLGKHPGERGDNIYNGAVDNATGVAGILEIADAFAHQDPKPTRSVVFLAVTLEESGLLGSKYYVANPSFPLDKIAAVINLDAMSVAGRARDVTVVGMGSSELEDILKPIAAMQGRTLHAEATPQSGSYFRSDHFNFAKAGVPALYADGGEDLREGGTAAGRAAAEDYGRHRYHAPGDEYDAATWKLDGTIEDLQVVYGVGKEVAAGERWPNWYPGNPFKAARDRMMAGRPGTSAASAQPADATSRATQTNMAKPPR
>NZ_CP009037.1|WP_011050031.1|30211_30655_-|PepSY-domain-containing-protein
MTQRLMKTALIGVLALVSQGALAQAADKPAKALTSGEVTSMLTAKGYTKVHDLKFEHGVWTADARSGDGKDVDVHIDPVTGRVYGDQTTSKLSEADVRASLSTGGYADVHDLKFNDGLWKADAKRNGQKVELHVDPEDGHVVSVEND
>NZ_CP009037.1|WP_015462682.1|30947_32081_-|glycoside-hydrolase-family-5-protein
MSAVCFSLRALLRSTLLFIVFGSLPLAHAQTRALTYAGVNLSGAEFASSKKPGVLNKDYMYAAASDYTYFAGVGMNTIRLPILWERLQPTASGELDPAQLALLQQAVARAKAAGMYLVIDIHNYAKYYGYKIGSPEVPVATFTDLWRRLALAFNSDNAVMFGLMNEPNNISASDWAGAAQAAIDAIRRTGANNLILVPGALWTGAHSWYSTTNDGYSNATALTSIYDPLDRYAFEVHQYLDADSSGTSSTCVSSTIGAERLRNFTQWLRTNRKRGFLAEFGTANNAVCNQALQGMLAYMETNADVWLGWTWWAAGSWWNLSYAYSVHPNKDGTDKPQMAILSPQATLATRAPVAAAAARTSAASTSATSTSVARTAR
>NZ_CP009037.1|WP_011050033.1|32717_33770_-|glycoside-hydrolase-family-5-protein
MKSLTTHTRRLRCRALSFLLLAAMPLAQAQSATGLKYAGVNLSGAEIKSSQKPGVLNIDYRYPAADEYAYFAGKHMNTVRLPILWERLQPRAGGELDPAQLALIRQAVANAKAAKMYVIVDVHNYAKYYGHTIGSTKVPISTFNDLWRRLAIAFKSDNAVIFGLMNEPYDIDPQAWATAAQASIDTIRKTGATNLILVPGALWTGAHSWYSTVAGQSNAVAMASIRDPLNRYAIEAHQYLDADSSGTSGGCVSATVGVERLRSFTEWLRLNKKRGFLAEFGTGNTVTCNLALNGMLGYMESNSDVWMGWSWWAAGAWWSGAYPFNVQPDAQGRDKPQMSILSPRARRITD
>NZ_CP009037.1|WP_162197921.1|35324_35483_-|hypothetical-protein
MTNANTQLQSILGQFAGRPDVTPDQEAQLRTTILADSSLLQKNSIKRQPVVT
>NZ_CP009037.1|WP_005922831.1|35488_36001_-|hypothetical-protein
MPTHAELTPQVLMDRFFSLIRDVKIFDELSPLVLERYLEVPFTKNAGENSGFYMLDQPSPYSKYATTYNFDEKFSQYSNVTLELISPSSVPPASLPPCELIFEEYDSALKDAGFEPQLGIYNEFGWVISFQYLRGNIRAQIIPWHPVSLDPQRKSRENCVRSISLHKYEE
>NZ_CP009037.1|WP_040145186.1|36269_36527_-|hypothetical-protein
MEQSLFGYYLLPEDAQLRLLQTRDHLRFLAALARPRCVSNTLGNNGPPIQMDALAFCFDMLAEQLNNVLLQTTVPGDMTERCPPS
>NZ_CP009037.1|WP_011052850.1|37045_37399_+|ribonuclease-E-inhibitor-RraB
MQRNLDLYPKDDNGDTLWHIAQQGVDLSTPREIAFSVVFPSKESALEFSVKMLRFEQKVRCCHYPENTAFPMDVTVYPTMLPSYKAISAFEDDLATEAKPLDGLNDGWEFSVDTKDA
>NZ_CP009037.1|WP_011052849.1|37457_37991_-|lipocalin-family-protein
MRGGSMLLLLTLAVYGSASGSESRAALPRADSVDVPRFMGDWYVIAHIPTRPERKAYDAVESYALRPDGRIQTTFTFRKGSFQAPLKSMHPIGQVAKQGNGALWRMQFFWPFKAEYVIAWLDAGYTQTIVARSKRDYVWYMARTPQVSDTDYQQAVQRIAAMGYDVSQLRRVPQSAR
>NZ_CP009037.1|WP_011052848.1|38338_39373_-|glycoside-hydrolase-family-43-protein
MSDELQAASLQALARTAISAPLVTHLYTADPSAHVFDGALYIYPSHDLDAGVAFSDDGSHFDMADYHVLRMAHPGAAVEDLGQVLHVRDVPWAQRQMWAPDAAQRNGKTYLYFPAKRADGMFQIGVAVGDRPEGPFVAEPQPIAGTYSIDPAVLADDDGAHYLYFGGIWGGQLQHYRDNAYAQTHQEPVGDAPALGPRVARLHERMIDLAEPSREVVILDEHGTPLRADDHARRFFEGPWVHQHAGRYYLSYSTGDTHRICYATSDSPYGPFTYQGVLLAPVVGWTTHHSICLFQQQWYLFYHDSVLSGGQTHLRSIKMAPLAHAADGTIATIYPYGEDAVSPW

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Crispr_ID: NZ_CP009037_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009037_2

742381-742565

Orphan

Consensus_repeat	Method
TGCTCGGCCGAAGGGCGCACCTGCAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP009037_2

>merge|NZ_CP009037|2|742381-742565|CRISPRCasFinder
TGCTCGGCCGAAGGGCGCACCTGCACCGCCGCCAAGGTGACGATGCGCGGGCCGGCCTGTTCGGAGGCCAGGGCGGCCACTTGCTCGGCCGAGGGGCGCACCTGCACGGCGGCCAGGGTGTGGATGCCGCTGTTGCGTTCCAGTGTCTGCTGGGCGATCTGGTCGGCGGCCGGGCGAACCTGCAC

>NZ_CP009037|2|2|742381-742565|CRISPRCasFinder
TGCTCGGCCGAAGGGCGCACCTGCAC	CGCCGCCAAGGTGACGATGCGCGGGCCGGCCTGTTCGGAGGCCAGGGCGGCCACT
TGCTCGGCCGAGGGGCGCACCTGCAC	GGCGGCCAGGGTGTGGATGCCGCTGTTGCGTTCCAGTGTCTGCTGGGCGATC
TGGTCGGCGGCCGGGCGAACCTGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009037.1\|WP_003488348.1\|741702_742179_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|349967
NZ_CP009037.1\|WP_003488515.1\|730857_731370_+\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP009037.1\|WP_011050184.1\|751105_751333_-\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
NZ_CP009037.1\|WP_003468167.1\|750614_750773_+\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP009037.1\|WP_003488352.1\|739414_740032_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_011050178.1\|738559_739312_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_005912225.1\|745886_746789_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|179147
NZ_CP009037.1\|WP_015471582.1\|732864_733461_-\|Ax21-family-protein	unknown	unknown	gnl\|CDD\|275096
NZ_CP009037.1\|WP_011050186.1\|752195_753869_+\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	unknown	unknown	gnl\|CDD\|235310
NZ_CP009037.1\|WP_005912222.1\|743475_744492_+\|3-oxoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|181732
NZ_CP009037.1\|WP_005912227.1\|746941_747325_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NZ_CP009037.1\|WP_011050176.1\|735596_737039_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP009037.1\|WP_015471585.1\|747647_749309_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236443
NZ_CP009037.1\|WP_011050175.1\|733819_735547_+\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP009037.1\|WP_003488921.1\|743053_743374_+\|DUF4156-domain-containing-protein	unknown	unknown	gnl\|CDD\|372679
NZ_CP009037.1\|WP_011050185.1\|751554_752199_+\|sterol-binding-protein	unknown	unknown	gnl\|CDD\|225706
NZ_CP009037.1\|WP_015462750.1\|737023_738370_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP009037.1\|WP_003488517.1\|731385_732411_+\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP009037.1\|WP_005928629.1\|740124_741354_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP009037.1\|WP_011050183.1\|749539_750550_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187552

Protein	Function_ID	Function_description	E-value
NZ_CP009037.1\|WP_011050175.1\|733819_735547_+\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP009037.1\|WP_003488515.1\|730857_731370_+\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	3.40232e-69
NZ_CP009037.1\|WP_011050185.1\|751554_752199_+\|sterol-binding-protein	gnl\|CDD\|225706	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown].	9.56708e-43
NZ_CP009037.1\|WP_003468167.1\|750614_750773_+\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	0.00222793
NZ_CP009037.1\|WP_011050184.1\|751105_751333_-\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	5.63459e-20
NZ_CP009037.1\|WP_005912225.1\|745886_746789_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|179147	PRK00870, PRK00870, haloalkane dehalogenase; Provisional.	1.66296e-47
NZ_CP009037.1\|WP_015471582.1\|732864_733461_-\|Ax21-family-protein	gnl\|CDD\|275096	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family. This family consists of proteins closely related to Ax21 (Activator of XA21-mediated immunity), a protein that is secreted by a type I secretion system (RaxABC), and that appears to be sulfated on an N-terminal region tryosine in a motif LSYN. Ax21 acts in a quorum-sensing system. Homologous peptide-mediated quorum-sensing systems appear to exist in other species, such as the emerging opportunistic pathogen Stenotrophomonas maltophilia. Intriguingly, the rice genome encodes a receptor (XA21) for this protein that triggers innate immunity. [Cellular processes, Pathogenesis].	3.24041e-107
NZ_CP009037.1\|WP_011050186.1\|752195_753869_+\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	gnl\|CDD\|235310	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed.	0
NZ_CP009037.1\|WP_005912222.1\|743475_744492_+\|3-oxoacyl-ACP-synthase-III	gnl\|CDD\|181732	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed.	0
NZ_CP009037.1\|WP_005912227.1\|746941_747325_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	2.77539e-20
NZ_CP009037.1\|WP_003488348.1\|741702_742179_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.47465e-81
NZ_CP009037.1\|WP_015471585.1\|747647_749309_+\|AMP-binding-protein	gnl\|CDD\|236443	PRK09274, PRK09274, peptide synthase; Provisional.	0
NZ_CP009037.1\|WP_011050176.1\|735596_737039_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.80619e-32
NZ_CP009037.1\|WP_003488517.1\|731385_732411_+\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	0
NZ_CP009037.1\|WP_015462750.1\|737023_738370_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	6.14519e-174
NZ_CP009037.1\|WP_003488921.1\|743053_743374_+\|DUF4156-domain-containing-protein	gnl\|CDD\|372679	pfam13698, DUF4156, Domain of unknown function (DUF4156). The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.	9.95984e-10
NZ_CP009037.1\|WP_005928629.1\|740124_741354_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.01108e-20
NZ_CP009037.1\|WP_011050183.1\|749539_750550_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187552	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs. Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.10058e-81

>NZ_CP009037.1|WP_003488348.1|741702_742179_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MSAPVLDVILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLQVHADLPSALAAIAPKRVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ
>NZ_CP009037.1|WP_005928629.1|740124_741354_+|MFS-transporter
MPMTKTRPRGTRALEALHFSVADVQDGLGPFLSVFLQSKGWSVAAIGTVMSVGGIAGMLATTPAGALVDATRRKRAVVVIGCLAILLATALIWLQPTSSGVVAAQIASALAAAGIGPALTGITLGLVHARGFDHQLARNQVANHAGNVLAAVLAGWLGWRYGFAAVFLLTAFFGALALVAVLAIPAAAIDHRAARGLASNNGGDALSGWRVLLTCRPLALLAVTLGLFHLGNAAMLPLYGMAIVAAHAGDPSALTATTIVVAQATMVVVALLAMRWIRVHGHWWVLLVAFMALPLRALVAASVIHGWGVFPVQILDGLGAGLQSVVVPALVARLLQGTGRVNVGQGAVMTVQGVGAALSPAFGGWLAHAFGYRIAFLTLGAIALLAVALWAGCRGMLQAGASVQAETML
>NZ_CP009037.1|WP_003488352.1|739414_740032_+|hypothetical-protein
MHWVDPDFLPATRGTLARFLLNPKADIDGLLLTDGTEVHTPPHLSEALLKALKPGSALTVRGLKPRDVEMLVALAIDPEGGKRILDEGPHGPHAKPKPKPPGKPPKPEVAQHSGTITRLLHGPHGQVHGVLLDDAVTVRFPPHAGGDFAKQLVVGKPLVAEGETKATPHGVLIHAHALGGKAATLKQIEHPPHGPAHKPKPKPKH
>NZ_CP009037.1|WP_011050178.1|738559_739312_+|hypothetical-protein
MLRQTVLAIALACTIGAAAAQVAAPPPPPAPNGPIGGPPAPPTPVAATPVSVSGTVERFLLNPNGDVDGLWLRDGTQVGFPPHLSSEVKAAVRAGDSVVVKGFRLGNLPVLQVSSIRSGRSGREVVDRPPTFGAAPPPPPTPGQLTPLQSDGTIQRLVYGPAGEINGALVSDGTVVRMPPHLALQFADLLRVGAPLSASGLGVATPDGRAIEATQLGRDRSSLRALFTAPRPDGPLPPPPPVAPVPPAGR
>NZ_CP009037.1|WP_015462750.1|737023_738370_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MARILIIDDDAAFRTTLQATLRSLGHTAVAAENGPDGLARLSEGGIDMAFVDFRMPGMDGIAVLRARLDDAQARQVPLVMLTAHVSSGNTIEAMTLGAFDHLVKPVGRADIVEVVERALLSRAEAQAAATDALSAPVEDDDALVGHSPAMRTVHKRIGLAAASDLPVLITGETGTGKELAARALHRASPRASAPFAAVNCAAIPLELMESELFGHRKGAFSGASSDRRGLIREADGGTLFLDEIGDMPLPMQAKLLRFLQEGEVTPLGGSGPQKVDVRVLAATHRDLAACVADGRFRSDLRYRLNVVPIELPPLRERGQDILLLAQHFLSANAARAQSLSPAAQERLLAHRWPGNVRELRNVMQRSQVLVRGASIDAADLEEALGEAGEAPPNGASALTGTLPEAVAQLEKRMIQSALEQSQGNRAEAARRLGIHRQLLYRKLEEYGL
>NZ_CP009037.1|WP_011050176.1|735596_737039_+|HAMP-domain-containing-histidine-kinase
MPRSLLRQLLLIWMVIVAACVGVATMLYGLYRQTEGVRLEEARQQLGGQCARIVQRYAGASEAARRGDDGAGLAAVVVQLVLADAPGVEGGVWDLHKGFVAYAYPTYDGSDHKTDIPAAEWANIVNAAQQSVTTKQAAQYRRDGRREVLLISACPLASGSAAWTMTRVPASKADAWRPLVVGMLLIFAMVAISAIALGVLVRRWSQRLQRIQQALAADTETPHIPPTGTPELDRLGAAVNDYAQRNAQALAQTRRLAAELSRHERLAALGRMTATVAHEIRNPIATMRLALENEIARGDATPDDAAHGELMLGQIRRLDGVVESLLGMVQPIRLQLETVVVQDWLATLLEHGPLPPGTSPPRVLLPAAPLRWTLDPQQLGRAVHNLLRNAAQHADPGSEVTLQAAAVEGMLQLQVCNRGAPIAEPIAAHLFEPFVSGRADGNGLGLALVREIARAHGGHARYAHADGLTHFILELPWRAS
>NZ_CP009037.1|WP_011050175.1|733819_735547_+|ubiquinone-dependent-pyruvate-dehydrogenase
MAKKRTLARFLAETLQSAGVERIWGVTGDSLNGLTDALREMQTIEWMHVRHEEVAAFAAGAEAAVTGQLAVCAGSCGPGNLHLINGLFDCHRSRQPVLAIAAHIPSSEIGLSYFQETHPQELFRECSHFVEMVTNPAQLPEVLHRAMRTAILQQGVTVVVIPGDIALLEVDKHVSSAWPALRQPRVLPAAEDVRQLVELLQQSKAVTLLCGSGCAGAHDAVVALADTLGAPVVHALRGKEYVEWDNPFDVGMTGLIGFSSGYHAMLNCDTLLMLGTDFPYRQFYPKDATIVQVDRDPSALGRRTPLQLGIAADVGETIAALLPQLQRREERGFLEKSLAHYRKAREGLDDLAVPADPGQPLHPQFVTRLISQIADQDAVFTCDVGTPTVWAARYLRMNGKRRLLGSFNHGSMANAMPQALGAQAAFPGRQVISLSGDGGFAMLMGDFISLAQLHLPVKVVVFNNASLGFVAMEMKAAGYLDTGTELRNPDFAAMSNAMGILGIRVDESSQLERALRQAFAHSGPALVDVRVATQELAVPPAIKLEQAKGMGLYLLKAVMSGRGDEVIALVKTNLR
>NZ_CP009037.1|WP_015471582.1|732864_733461_-|Ax21-family-protein
MKTSLLALGLLAALPFAASAAENLSYNFVEGDYVRTPTEGRDADGWGVKASYAIAPNFHVFGDYSKQNADDNNNVFENTDSDFQQWGVGVGFNHEIATSTDFVARVAYRKLDLDTPNINFDGYSVEAGLRNAFGEHFEVYALAGYEDFSKKRGIDIGDNFYGRLGAQVKLNQNWGINGDIRMDGDGNKECSVGPRFSW
>NZ_CP009037.1|WP_003488517.1|731385_732411_+|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase
MSDLTHKIAVLGAGSWGTALAALLARHGHPTVLWGRDAAMVDTIDRTHENARYLPGIALPDSLRATTDLQAAVADATWILVVVPSHAFTETIRLIAPLRPPGAGVAWATKGFEPGSGRFLHEVARDILGPSVPLAVVTGPSFAKEVTLGLPTAITVHGDDAAFAQVVADAMHGPTFRAYTGDDMVGAELGGAMKNVLAVATGVADGMQLGLNARAGLITRGLNEMLRLAAVIGARPETLMGLAGLGDLVLTCTGDLSRNRRLGLALGRGQSLDEAIREIGQVVESVQTADEVMRQAEHHGIELPISNAVRAVLHGEITPEAGLKELLARERKPEYPQTLFT
>NZ_CP009037.1|WP_003488515.1|730857_731370_+|protein-export-chaperone-SecB
MSDEILNGAAAPADAAAGPAFTIEKIYVKDVSFESPNAPAVFNDANQPELQLNLNQKVQRLNDNAFEVVLAVTLTCTAGGKTAYVAEVQQAGVFGLVGLDPQAIDVLLGTQCPNILFPYVRTLVSDLIQAGGFPPFYLQPINFEALYAETLRQRQNEGTSLADSEPAGNA
>NZ_CP009037.1|WP_003488921.1|743053_743374_+|DUF4156-domain-containing-protein
MRVLMLSVLVATSTAACTWVPIEQSGKSVRVLPAGPVPAGCQQQGEVVVTVKSKVGFYNRNPLRVQEELETLARNEAPGANANAVQAQGQPADGSQRFNAFRCPPR
>NZ_CP009037.1|WP_005912222.1|743475_744492_+|3-oxoacyl-ACP-synthase-III
MLFQNVSIAGLAHVDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRLWDQDVQASDAATQAARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAMVMARTELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFMAARQVLGWAVDELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSMAEVVW
>NZ_CP009037.1|WP_005912225.1|745886_746789_+|alpha/beta-fold-hydrolase
MNYPGYPFPPKRLEVRPGVAMSYLDEGPRDGEVVVMLHGNPSWSYLWRHLVSGLSDRYRCIVPDHIGMGLSDKPDDAPDAQPRYDYTLQSRVDDLDTLLRHLGITGPVTLAVHDWGGMIGFGWALSHHAQVKRLVITNTAAFPLPAEKPMPWQIAMGRHWRPGEWFIRTFNAFSSGASWFGVSRRMPADVRRAYVAPYNNWRNRISTIRFMQDIPLSPADQGWSLLERSAQALPAFADRPAFIAWGLRDICFDKHFLAGFRRALPQAEVTAFNDANHYVLEDKHEVLVPAIRAFLERNPL
>NZ_CP009037.1|WP_005912227.1|746941_747325_-|YkgJ-family-cysteine-cluster-protein
MAHPCLTCGACCAYFRVSFHWSEADPALGGRVPIELTEALRTHERAMRGTSQSQPRCIALDADIGRYSRCSIHDRRPSSCAAVPASLEFGQRSAQCDKSRLAHGLHALTDADWVGVDDAQRNPLPAV
>NZ_CP009037.1|WP_015471585.1|747647_749309_+|AMP-binding-protein
MTTLCNIAATLPQLARERPDQIAIRCPGGRGANGFAAYDVTLSYAELDARSDAIAAGLARHGIGRGARAVVMVRPSPEFFLLMFALFKAGAVPVLVDPGIDKRALKQCLDEAQPQAFIGIALAQLARRLLRWARSATQIVTVGGRYGWGGVTLARVERDGAGAGSQLADTAPDDVAAILFTSGSTGVPKGVVYRHRHFVGQIELLRNAFGMQPGGVDLPTFPPFALFDPALGLTSVIPDMDPTRPGSADPRKLHDAINRFGVTQLFGSPALMRVLADYGQPLPNVRLATSAGAPVPPDVVAKIRALLPADAQFWTPYGATECLPVAAIEGRTLDATRAATEAGAGTCVGHVVPPNQVRIIAIDDAAIADWSGVRELATGEVGEITVAGPTATDTYFNRDAATRIAKIRECCSDGSERVVHRMGDVGYVDAEGRLWFCGRKTHRVEAASGPLYTEQVEPVFNVHRQVRRTVLVGVGAPGQQQPVLCVELQPGVSASAFAQVESDLRALGAAHPHTAGVARFLRHSGFPVDIRHNAKIGRETLAVWAAQQLHKRG
>NZ_CP009037.1|WP_011050183.1|749539_750550_+|NAD-dependent-epimerase/dehydratase-family-protein
MKVLVTGGGGFLGQALCRGLRARGHEVVSFQRGDYPVLQRLGVGQIRGDLADPQAVRHAFAGIDAVFHNAAKAGAWGSYDSYHQANVVGTQNVIEACRANGVPRLIYTSTPSVTHRATNPVEGLGADEVPYGDDLRAAYAATKAIAERAVLAANDAQLATVALRPRLIWGPGDNHLLPRLAARARAGRLRMVGDGGNLVDSTYIDNAAQAHFDAFEHLAVGAACAGRAYFISNGEPLPMRELLNRLLAAVDAPAVTCSLSFNTAYRIGAVCETLWPLLRLPGEVPLTRFLVEQLCTPHWYSMEPARRDFGYVPRISIEEGLQRLRSSSSNDIAITR
>NZ_CP009037.1|WP_003468167.1|750614_750773_+|DUF1328-domain-containing-protein
MLHYAIIFFVIAIIAAVLGFSGIAGAATNIAWILFVVFLILAVISMFRRGKV
>NZ_CP009037.1|WP_011050184.1|751105_751333_-|D-alanine--D-alanine-ligase
MRTIRVGLIFGGKSAEHEVSLQSARDILDALDPRRFEPVLIGIDCSRWTRTRVMPLRISGGWPIALHGLCMSIAS
>NZ_CP009037.1|WP_011050185.1|751554_752199_+|sterol-binding-protein
MPGSLFNSLKPLAGQALQAALNRALALDPDTREALLPLEGQRIALTLEAPALALQIRVHERRLLVGPVDQAQEPDLAVRSSLAGLLGQLPFLANARRTGAPAGRLKVSGDAELARQLQQLAGRFDPDWQLPFVAVFGDILGVQIAGAVRAALQQARRSAVDLAQSAAEFVTEESRDVVPRAELEAFHDDVDELRDDVERLAARVSRLRASGGAA
>NZ_CP009037.1|WP_011050186.1|752195_753869_+|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB
MKAILRASRIGRVILRYRLDALLEGTPAERWLRLAKPFVPRASAEIAAQSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGQAARLIVEAALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSLATLVERTHPRADKIRPREVVAEIEGTLAAELDLQREGANASVLRRFWEGSDDLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEAGWMPSNVRIDELEAAARSVCEPYFNRPLSEISLAQVLIKLFRVAQRYELTLQPQLILLQKTLLNIEGVGRQLDPRLDIWAVARPVLERILRERYSPRRVLRELSKRLPEIMTHAPDMPRLVYSWLTQQVEGRHQIAIRSPELLALDLSLRKLQTRVVTAITGSGLLVVAAVLYGLHPDGWYLGTVPVWSWISGGAGSAALLVAWLRR

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Crispr_ID: NZ_CP009037_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009037_3

2748614-2748684

Orphan

Consensus_repeat	Method
TCCCAGACAGTGTCTGGGAAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009037_3

>merge|NZ_CP009037|3|2748614-2748684|CRISPRCasFinder
TCCCAGACAGTGTCTGGGAAATTGGGAAATGAGTCGCCTACCGAGAAATCCCAGACAGTGTCTCGGAAATT

>NZ_CP009037|3|3|2748614-2748684|CRISPRCasFinder
TCCCAGACAGTGTCTGGGAAATT	GGGAAATGAGTCGCCTACCGAGAAA
TCCCAGACAGTGTCTCGGAAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009037.1\|WP_011051227.1\|2756032_2756449_-\|type-I-toxin-antitoxin-system-SymE-family-toxin	unknown	unknown	gnl\|CDD\|370150
NZ_CP009037.1\|WP_011051224.1\|2759190_2759709_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_015472214.1\|2744800_2745487_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_102047521.1\|2741640_2743119_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|275228
NZ_CP009037.1\|WP_011051226.1\|2757239_2758394_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_011051229.1\|2753982_2755197_-\|IS4-like-element-ISXac1-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP009037.1\|WP_015463230.1\|2745673_2746450_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_011051423.1\|2740792_2741644_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_011051425.1\|2743195_2743651_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_015463228.1\|2743985_2744198_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_011051228.1\|2755310_2755946_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_157882626.1\|2751250_2752030_-\|peptidoglycan-binding-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_011051430.1\|2746505_2746871_+\|DUF3085-domain-containing-protein	unknown	unknown	gnl\|CDD\|371450
NZ_CP009037.1\|WP_011051427.1\|2744217_2744610_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_015472216.1\|2752327_2753074_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381599
NZ_CP009037.1\|WP_011051422.1\|2739016_2740480_+\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP009037.1\|WP_011051225.1\|2758403_2759252_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP009037.1\|WP_011051431.1\|2747090_2748290_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP009037.1\|WP_015463131.1\|2759946_2763048_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP009037.1\|WP_005923955.1\|2750586_2750826_-\|DUF4238-domain-containing-protein	unknown	unknown	gnl\|CDD\|379425

Protein	Function_ID	Function_description	E-value
NZ_CP009037.1\|WP_015472216.1\|2752327_2753074_-\|hypothetical-protein	gnl\|CDD\|381599	cd00737, lyz_endolysin_autolysin, endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	4.66079e-12
NZ_CP009037.1\|WP_011051227.1\|2756032_2756449_-\|type-I-toxin-antitoxin-system-SymE-family-toxin	gnl\|CDD\|370150	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system. SymE (SOS-induced yjiW gene with similarity to MazE ) is an SOS-induced toxin. It inhibits cell growth, decreases protein synthesis and increases RNA degradation. It may play a role in the recycling of RNAs damaged under SOS response-inducing conditions. It is predicted to have an AbrB fold, similar to that of the antitoxin MazE. Its translation is repressed by the antisense RNA SymR, which acts as an antitoxin.	4.1712e-14
NZ_CP009037.1\|WP_011051430.1\|2746505_2746871_+\|DUF3085-domain-containing-protein	gnl\|CDD\|371450	pfam11284, DUF3085, Protein of unknown function (DUF3085). This family of proteins with unknown function appears to be restricted to Proteobacteria.	4.46133e-31
NZ_CP009037.1\|WP_102047521.1\|2741640_2743119_-\|AAA-family-ATPase	gnl\|CDD\|275228	TIGR04435, ABC_transporter, restriction system-associated AAA family ATPase. Members of this family are AAA family ATPases by homology. They occur regularly in a conserved gene neighborhood with the restriction (R), modification (M), and specificity (S) proteins of an apparent type I restriction enzyme system, plus one additional uncharacterized protein. It is not clear whether members of this family contribute to restriction per se, or to another process such as transfer of mobile elements.	1.13783e-11
NZ_CP009037.1\|WP_011051422.1\|2739016_2740480_+\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	1.96916e-38
NZ_CP009037.1\|WP_011051225.1\|2758403_2759252_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.63046e-48
NZ_CP009037.1\|WP_011051431.1\|2747090_2748290_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.41326e-25
NZ_CP009037.1\|WP_011051229.1\|2753982_2755197_-\|IS4-like-element-ISXac1-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.21187e-06
NZ_CP009037.1\|WP_015463131.1\|2759946_2763048_-\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0
NZ_CP009037.1\|WP_005923955.1\|2750586_2750826_-\|DUF4238-domain-containing-protein	gnl\|CDD\|379425	pfam14022, DUF4238, Protein of unknown function (DUF4238). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 274 and 374 amino acids in length.	1.87106e-11

>NZ_CP009037.1|WP_011051431.1|2747090_2748290_+|tyrosine-type-recombinase/integrase
MAKIKLTKSAVDAAQPQDKAIELRDTVVPGFLCKITPAGRKVFMLQYRTNAGERRKPALGQYGELTVDQARTMAQEWLAEVRKGGDPSAAKNAARKAPTMREFCHTFMEDYSKQRNKPSTQRGYQGVIDRCIIPIMGRMKVQDVKRPDVAALMKRLAYKQAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHVPMYPPGKETRLIVDDELVRIFRHLEHLEAEGLENYVIPLAIRLQFEFAARRSEICPLEWAWVDLENRRVVWPDSKTGGISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPTRHMTHGEHYGGWTRVLKAAGVPHVGTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPVRDAAELVANRRLAITGASRSMEATA
>NZ_CP009037.1|WP_011051430.1|2746505_2746871_+|DUF3085-domain-containing-protein
MSIRFRGTDLRPVLTEALAQRCKLVLVKDQGVYWLAEHGERCADGRQKLLAYAIGCHPDVDDFDAWWHLAQGELGGDDFAEFFDPGHAVFKQVLHGDFDLSLSATDQLLSVRAIPSTDPHR
>NZ_CP009037.1|WP_015463230.1|2745673_2746450_+|hypothetical-protein
MDTQAIRAQMPTLVCGHVPSNVHRFKFQIFDGEPKVSILGLAVDPKPFDGKVIARTDEAIVVKTGRAEFAVLDRTLVTEVPDEGAKVHVEPYARRRFDGLRADTPQKRIEQTSDGHVYSVETTVLGSAPAPLPIPKPRCPELAALIEQLEQLPAPGGFRRITHMLVDAGARDFTWVDPTPAHIIQTPPAIGFTVSTGKFAGDVRVLYDRAADQYVIELHRDGECVDRTEDVFFDDLGQVLERLIDDGSWRRIQVRRLP
>NZ_CP009037.1|WP_015472214.1|2744800_2745487_+|hypothetical-protein
MANNHYEATGVLVLDRVTPVIRALFGGFQLDADYPGNGDAYIALVASNPPSWDDLREELVELAKPLGYTSSAQAIPAVGDVLQVLARHFGAEGNMALMSLIGREQFDDAADLHALFLLATCFDDGHHLREIRFEGCWRCDKPRLFEFGGEGQYLSREFDAHSASGHALQLGHLVREALSSGDFDQGATVIAREASRLLAGIHNAAHRRQLQRRVVWHLIEGLCADGEQ
>NZ_CP009037.1|WP_011051427.1|2744217_2744610_+|hypothetical-protein
MNSTLPPEIVEQLVQEQRHFTAAPEAFFQAWKRGAELAGPEWFGDGTQAGLQQATSKWELRPNLLAVGDALGVLSGGQRMFLSAMVSFYNAREGAAMLRRCRFEGLADFGGLDLPRRQVLADLVLNYVGW
>NZ_CP009037.1|WP_015463228.1|2743985_2744198_+|hypothetical-protein
MSQPSRFGQLALAYAGKLLPLQVLHSAAGHYIGTRDFDGPVSRESNEYFRSEATAKRALERGGWSQMSNP
>NZ_CP009037.1|WP_011051425.1|2743195_2743651_+|hypothetical-protein
MEPGSPQPLADQARFLHESAVKRQVLSVRMRGISVSVLHAAVRLFGGTTDLRCPPLCTGYKLFVTAKACSVTRLVSDYIVDDRYDENREDEDEDAETIRTFIAIGSSSSPAPVVETLLPHALRYGKQPKLADASVTLTFDAEGKLASVTST
>NZ_CP009037.1|WP_102047521.1|2741640_2743119_-|AAA-family-ATPase
MGRGAALPRAVAPYFVLRTDNWDDFGHRVQFHLILIVSGAPEKRIGSLKVLQRTSDKGEAMMVATDTELPSKFVELDDTFVSLGQDDDFYKKLHEALGDRAGEVLDALRDIAWRPAFASDFEPTPAFRNAMMRENGAQRARRFGRAWALGEQITERPAFDYVGTIEGADIKVEGEFDFSATDPVPGRIVGLIGRNAVGKTRYLASLGSDLAQISRRSAEALEAREARFPGGRPLFTRIIAISYSAFDRFKRPPMDSSSSYVYCGIRNDRGGLSRSALIDRYRLNQVRIRERGEQRSWMRHMKTILGDQGAQLTASLEEEIRSDSTDDSALSSLSSGQSILAHFVTALLAWIQPNSLVLFDEPETHLHPNAVASLFLVLSQVLQEFDSYAVIATHSPVVIQEIPAKRVLVFRREGNVTIAEPLLLESFGESVTELTRHVFETGEVESLYKRTLRELAAEDTVEDVLARFELGLSLSAQAYLLAQYSKKAGGRT
>NZ_CP009037.1|WP_011051423.1|2740792_2741644_-|hypothetical-protein
MKALTPLPLIPSSYLDRYVAIRDKKHKETREPLVAAHALLTQRYQDHAEAIALGTLSSLTKNLQAIELSVPLRACYGGATKPLKMLKKDIKGAQPQRQLKYCPMCGTTLPKTYDHYLPAVEFPEFAVHPLNLVPCCALCNSIKDDDWLSAAGERQYLHAYVDALPDVQFVHVTLHEHPAMRGVGATFSLNIPASVPAAQRRLIEVHFRRLQLIARYDELGNDEIAEILSDCKTHQEAGGSQVRIFLCGRAADRTIVHGRNHWTAVLMSALAEHTKLQSWIDAA
>NZ_CP009037.1|WP_011051422.1|2739016_2740480_+|DNA-cytosine-methyltransferase
MNPSPPTSNDIAYGSVCSGIEAVSLAWEPLGLKPAWFSETDAFASAVLAHRYPHVPNLGDMTRLAQRIRDRSVPAPDILVGGTPCQSFSVAGARQGLADPRGALTLAYVEIANAIDQVRNRAHRPPATLVWENVPGVLSDRGNAFGCLLGALAGEDHALEPPGKRWTHAGCVSGPRRRIAWRVLDAQYFGVAQRRKRVFLVASGRGGVDPAEILFEREGLPRDPSPGGAPWQGAAHATGAGAPAAGRSSGLMSPYGKVSISVGFGNAQGPADVAACLLGAPPRFDLSTETMLVQSVAGAISHTLDTANGGKGSGEDGTGKGVPIIAFTAQGSGADADVGRSPTLRADAHRASHANAGVVPAIAFAQNSRSELRWESGHGQISGTLSTGGGTPGQGRPMVLQAAAYEDHYVCAPEGADTAWGMQWRVRRLMPRECERLQGMPDDHTLVPYRGKPAADGPRYRAIGNSMAVPCIAWIGERLRRSMVGKS
>NZ_CP009037.1|WP_005923955.1|2750586_2750826_-|DUF4238-domain-containing-protein
MIEPLLAPLLTGPKRQHFLPRFYLKGFTRDDQLLSVYDRTTGEVRRQSPDNTAVTGHLYTLTDDQGRKRFELEGDASRY
>NZ_CP009037.1|WP_157882626.1|2751250_2752030_-|peptidoglycan-binding-protein
MLIGGPGHDVLRGGAGNDIYIVNDGDVVQDADRNGQIFWDGRQLTGGTRQGDEPEGVFRSADGQTTYRIQGADLLIGNERGQSVTVQDFQSGSLGIELGQAHVQREHGASQTEQGAVKISESGRYQLASLSQDPLHSQAEDAVRRLEQGLGREYDDNSARLAASSAYLAKENGLSRIDHVVLSENTKSVRQGENVFVVEGALNDPAHKMAHMKTSDAIAQPVEQSLAQLQALGETQRQQQSQQQEQQREQLIAPQHRMV
>NZ_CP009037.1|WP_015472216.1|2752327_2753074_-|hypothetical-protein
MPINYRELTQEQYNALTGDLVKLTESLHARSQDVGDGRATIGYGYTFNRSNNAAIWAESGIELSDAQRRQLSRIDAAAPGDRTRLGLQFDRTLNAAEGDQLLAASMPEYERPINALNMPMSQERAALVSLVYNRGAGSYNANMQSFRDAVVAGDRSEAWFEMRYNAWGSNAAAEAGLRKRRVLESELFGLYSDPNNVTSDEALSTYQMYQQHRERINRDEARWGVDIDGNPGCQRRFKSDPLFVGSPK
>NZ_CP009037.1|WP_011051229.1|2753982_2755197_-|IS4-like-element-ISXac1-family-transposase
MRASEVLQKCLSNSLSGMHALRQRTLLGAVEALVHGGRLTLIDIARAWPGATRVRAPLKACDRLLCNRTLQAERSMIERDMAHWLLRGDQPVIVIDWSDLRPDKSWCLLRAAVPIGGRTLTLLDMVVAGKQQGSPGAEKRFLQQLRRMIPDDVRPILVTDAGFRTPWFRAVSAMGWDWVGRLRGRTQVKPQDVPDDAAQWIDSRRLHALASNRACELPPMQANRSDPLDCRLVLYAKTRLGRQQRNRRSPAKVSRASSSLKAAAREREPWLIVASPQLQAPSAKHLVNLYARRMQIELAFRDLKSHRYGQAMEDSLTRRGERLQILLLLNTLATFASWLAGLGCEATGIAQWLSPRSSTRKLYSTLRVGRQALARRWPMEPVSRWLERLRTLPEAVREQMTLVL
>NZ_CP009037.1|WP_011051228.1|2755310_2755946_-|hypothetical-protein
MIARPLYALLASLALGACAHTAATPAPATVTETSAMNSSAESKVTPAGGEPSGPIRTAEDALTRMLALIQAIDGLDDLTPDYLQSKMGVPVTHAAADPKRYGASAPLTSEWGYSFGMDQTPTAGRWFEFTFIPAQAGASPSMTEICGIDFETFTKKLENIGFVRQRNMVEDGRWMSDFFTRPGMRVEVFPRGEAAKPQVLVAHKCIEWVYI
>NZ_CP009037.1|WP_011051227.1|2756032_2756449_-|type-I-toxin-antitoxin-system-SymE-family-toxin
MTRRRPPTASASARPTRTRARPTPPKRVQWVVVEPDRTKLPPMLPPDPDASPQGPGTLRAPRRARRPRQCTVSYTHYPGAHDHAGDQHVPHVRLSGLWLEQLGFAIGTKLRITASEGQLLMEVLPPVETPAKARNVRR
>NZ_CP009037.1|WP_011051226.1|2757239_2758394_-|hypothetical-protein
MASYLQFGHDSWNLLEEADIGAYTGLILSPVNDGPTDVQTRLARLGTLRDRLEVILDPQMYNPAVEKGKMDQWSYFPADFATADHADIGWWTTRTRAIVDEGARLGVDAVCSPALFPRAFTDDYYSLMVEVADATKQYADQHEIQTMLTAVVSLRDLANPTRAMAIASILSRSSCERVYLTFVNEDVPPREPLKDGAGIPTAVHLVRLLSAEMRVHVAFVSHDLILWKLAGATDISTGKFMNLRRFSPGRWQDEEAGGRQVAYWNEGPLLARLREADVALLLRHGWFEGRDMSGNPSEARILEIIRGGTRTAWLKLSWMQYLRWASNMEALWHGNPTLAEASLDTADRNWSEIVDRRKLLFQDRFNNGDHVRAWMNAVRESRIR
>NZ_CP009037.1|WP_011051225.1|2758403_2759252_-|serine/threonine-protein-kinase
MSAQLNLDLVAEQLCQQCGFEFKGLLGKGAFKSAYLSVHKSYPFALKIAAIAGDANRLVREADALKECSHASVAKLLQAFSYAHGTHHLWVVYEEYLGGGTLEARLKLGALPPAVVRALGVRLAEVLEHLESKRLVHRDIKPANIMFRDDRDPHPVLTDFGIVRMLDQPTLTHAFMQMGPGTPAYAAPEQLTNDKALIDWRTDQFGVAIVLAECLLGHHPFLEPGKTINDAIISVAAKHEMPATNAQRLTAMGFGCITRALKPWPVSRYRRPSDFIKSLTQA
>NZ_CP009037.1|WP_011051224.1|2759190_2759709_-|hypothetical-protein
MSQATAPAIDRDDFSTESDFVDSFVGKLSKGRTSFGKVEITKEWDHRAGVVDVLARHRRKTLVAFEAKLNNWKRAFHQAYRSTAYANKSYVIVPAHVAARALRNRDEFELRGVGLCSFDGKSVEVLIEASEQDALLTWLRAQAHEHFDSLKDDERAAKSRSGCRAAVSAMRI
>NZ_CP009037.1|WP_015463131.1|2759946_2763048_-|TonB-dependent-receptor
MNCTPFARNRSTLYAGIAIALFASAASTSAAAQQADGTPAPTDQAAVQATDLDAVTVTGYRYAIEKSLEQKRNANAVVDVITAEDVGKFPDKNVADALQRVPGVVISRDGGEGKNVSVRGLSSELVLTELNGNYIATAESNGDPTRSFNYTLLPSNLLGSAELYKTPEARIDEGGIGGTVILQTRRPLELEPHSGFVSAEGTWSDTSKKTDGQFSGSYSWHDKDNRFGVFVGYTQQKRTARTLNASTESWQWYGRDEGGPAVDVNGNRSDFNANWWGGTGFWNQDGNYYTGFMMPTAVSLEAKREERERKGGQLTLQFKPTDDLTLTANYFRFDLSQDSQTNTIKIPEWNIARYYGDGNWRGGRLLDGLQFDPSGTIVTGAAYSLRPGKTYYCSEAQAAAAGLPPGGWGSDDCTVPTPQITGSYNIEKSQSQTVDLGGEWRGEQVDVAFKAGRTWAKGGPELQFSLPIKPRLQNADGSWTNGNFASAWDLTGTPSMTFSPELMQNLRDGILQVDLGSTGSSWTRNTNQQQYAQIDTTWHFDGEVFDSLQFGIKRRDGGIHRNTGNNYWVCPGTDPGDYDNRYWNGRCNAIATQFSPGLLFAQDNLAGGVNASAFPAINFPGYIGYLNQTYGAMQTRSEDNFVYNVDEEIYSTYLQLNFHTERLRGNVGVRVARTGQRADSTDKVTAYNDYFFDGADGNPLACQQGAATPGGAPADTYCGTEGYWRLADSVQRTESFVVSGLDRNYTDVLPSFNLAYDLTENLLLRAAASKVIARPSYNDIAAPGSLEFYSPEYVADRRLTGGASEQGWYGSGSNKNLEPYKANQFDLGLEWYFHPGSVAGVGLFRKNVENFAVDVISDVNMMVDGQLVTVQNYSTQAGGQDAVSQGVELYAQHTLPFGLGVQFNYTYNDASKAAVRLEDGTEAGKTSMPGSAKNQTNLTVFYETDSLLLRASYNRRGELVQGLVNGLNVFEEPYYQIDVNAAYNITPALSLTASVLNLTKQEFRSHLGDDTRARFYTGGYAGRLAYLGLTYKF

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Crispr_ID: NZ_CP009037_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009037_4

2766802-2766896

Orphan

Consensus_repeat	Method
CTGGCCGAAATGGATGCCGACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009037_4

>merge|NZ_CP009037|4|2766802-2766896|CRISPRCasFinder
CTGGCCGAAATGGATGCCGACCCGGCGTTCGGAGCCGCACCCACCGCAGTGGACCTGATCACCGCAGATCTGCTGGCAGAAATGGATGCCGACCC

>NZ_CP009037|4|4|2766802-2766896|CRISPRCasFinder
CTGGCCGAAATGGATGCCGACCC	GGCGTTCGGAGCCGCACCCACCGCAGTGGACCTGATCACCGCAGATCTG
CTGGCAGAAATGGATGCCGACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009037.1\|WP_015472221.1\|2776457_2779247_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP009037.1\|WP_011051224.1\|2759190_2759709_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_005914940.1\|2763960_2764701_+\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|181654
NZ_CP009037.1\|WP_011051221.1\|2768300_2770307_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP009037.1\|WP_011051226.1\|2757239_2758394_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_011051229.1\|2753982_2755197_-\|IS4-like-element-ISXac1-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP009037.1\|WP_003489696.1\|2765683_2766466_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP009037.1\|WP_003489692.1\|2767596_2767905_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|379202
NZ_CP009037.1\|WP_011051219.1\|2773151_2773685_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_015472222.1\|2779543_2780305_+\|transporter	unknown	unknown	gnl\|CDD\|379259
NZ_CP009037.1\|WP_011051228.1\|2755310_2755946_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_005922751.1\|2764707_2765682_+\|flagellar-motor-protein-MotD	unknown	unknown	gnl\|CDD\|181618
NZ_CP009037.1\|WP_015463128.1\|2770546_2772832_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP009037.1\|WP_015472224.1\|2782911_2785170_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP009037.1\|WP_011051227.1\|2756032_2756449_-\|type-I-toxin-antitoxin-system-SymE-family-toxin	unknown	unknown	gnl\|CDD\|370150
NZ_CP009037.1\|WP_002806565.1\|2767901_2768267_+\|response-regulator	unknown	unknown	gnl\|CDD\|381110
NZ_CP009037.1\|WP_011051225.1\|2758403_2759252_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP009037.1\|WP_005931838.1\|2774208_2776386_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP009037.1\|WP_015463131.1\|2759946_2763048_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP009037.1\|WP_040236987.1\|2780318_2782691_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001

Protein	Function_ID	Function_description	E-value
NZ_CP009037.1\|WP_015472221.1\|2776457_2779247_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.22521e-113
NZ_CP009037.1\|WP_011051225.1\|2758403_2759252_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.63046e-48
NZ_CP009037.1\|WP_005914940.1\|2763960_2764701_+\|flagellar-motor-protein	gnl\|CDD\|181654	PRK09109, motC, flagellar motor protein; Reviewed.	6.78947e-148
NZ_CP009037.1\|WP_011051229.1\|2753982_2755197_-\|IS4-like-element-ISXac1-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.21187e-06
NZ_CP009037.1\|WP_003489696.1\|2765683_2766466_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.78125e-60
NZ_CP009037.1\|WP_003489692.1\|2767596_2767905_+\|STAS-domain-containing-protein	gnl\|CDD\|379202	pfam13466, STAS_2, STAS domain. The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.	3.92342e-10
NZ_CP009037.1\|WP_040236987.1\|2780318_2782691_+\|chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.12643e-102
NZ_CP009037.1\|WP_015472222.1\|2779543_2780305_+\|transporter	gnl\|CDD\|379259	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation.	9.52129e-19
NZ_CP009037.1\|WP_005922751.1\|2764707_2765682_+\|flagellar-motor-protein-MotD	gnl\|CDD\|181618	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.	1.3622e-146
NZ_CP009037.1\|WP_015463128.1\|2770546_2772832_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	7.92021e-109
NZ_CP009037.1\|WP_011051227.1\|2756032_2756449_-\|type-I-toxin-antitoxin-system-SymE-family-toxin	gnl\|CDD\|370150	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system. SymE (SOS-induced yjiW gene with similarity to MazE ) is an SOS-induced toxin. It inhibits cell growth, decreases protein synthesis and increases RNA degradation. It may play a role in the recycling of RNAs damaged under SOS response-inducing conditions. It is predicted to have an AbrB fold, similar to that of the antitoxin MazE. Its translation is repressed by the antisense RNA SymR, which acts as an antitoxin.	4.1712e-14
NZ_CP009037.1\|WP_002806565.1\|2767901_2768267_+\|response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	5.03477e-67
NZ_CP009037.1\|WP_011051221.1\|2768300_2770307_+\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NZ_CP009037.1\|WP_005931838.1\|2774208_2776386_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	8.2722e-111
NZ_CP009037.1\|WP_015463131.1\|2759946_2763048_-\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0
NZ_CP009037.1\|WP_015472224.1\|2782911_2785170_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	5.52262e-109

>NZ_CP009037.1|WP_003489696.1|2765683_2766466_+|ParA-family-protein
MRIWAIANQKGGVGKTTTTLALGRGLAALGHRVLLIDLDPHSSLTRAFGVAIDPPPRGVLDLFGTPPSDLASLAHESSIPGLSYVCAQAALATLERRSANQPGLGLALQNAMTRHAGQHDYILLDCPPTLGLLMINALAACDRVVVPTQAEPLALHGLASMVRTADMVQRSRRRELPVSILPTLFDRRTRAGTETLKEMQATYGPVVWEDAVPVDTRICNAAALTVPAVGGDYQGRGLSAYRRALEWVLADDAMRMEQAA
>NZ_CP009037.1|WP_005922751.1|2764707_2765682_+|flagellar-motor-protein-MotD
MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFGGSSNKASPVQLGKTQSLGADYDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSKTLAPLIDKQLITIRRNDLWIEVEINSDILFGTGSATLAGRARGTLSTLAAVLREAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMVGYGEFRARADNSTEAGRNANRRVVLIILADSAGSLAPDPPSQLNATAAGAPKLPKSDGGQTAVTTESGTSSVPAVIQGVQ
>NZ_CP009037.1|WP_005914940.1|2763960_2764701_+|flagellar-motor-protein
MDRLSVIGLVLAIVAIVGGSVLKGAGISSLWSPAAFVIVIVGTVAAILLHTSPAVFRRAFKILRWVIQPPASDRPQLVARIVEWSNIARRQGLLGLEDQLPRQDDAFLRKGLQMLVDGVEPEAMRNMLEIEVDNQERQDLAAAKVFEGMGIYAPTLGIIGAVLGLMAVMKNLADPAMLGHGIAAAFTATIYGIASANLLFLPVAAKLKSVIHCSTNEREMAIEGLIAIAQGENPRNIESKLAGYLH
>NZ_CP009037.1|WP_015463131.1|2759946_2763048_-|TonB-dependent-receptor
MNCTPFARNRSTLYAGIAIALFASAASTSAAAQQADGTPAPTDQAAVQATDLDAVTVTGYRYAIEKSLEQKRNANAVVDVITAEDVGKFPDKNVADALQRVPGVVISRDGGEGKNVSVRGLSSELVLTELNGNYIATAESNGDPTRSFNYTLLPSNLLGSAELYKTPEARIDEGGIGGTVILQTRRPLELEPHSGFVSAEGTWSDTSKKTDGQFSGSYSWHDKDNRFGVFVGYTQQKRTARTLNASTESWQWYGRDEGGPAVDVNGNRSDFNANWWGGTGFWNQDGNYYTGFMMPTAVSLEAKREERERKGGQLTLQFKPTDDLTLTANYFRFDLSQDSQTNTIKIPEWNIARYYGDGNWRGGRLLDGLQFDPSGTIVTGAAYSLRPGKTYYCSEAQAAAAGLPPGGWGSDDCTVPTPQITGSYNIEKSQSQTVDLGGEWRGEQVDVAFKAGRTWAKGGPELQFSLPIKPRLQNADGSWTNGNFASAWDLTGTPSMTFSPELMQNLRDGILQVDLGSTGSSWTRNTNQQQYAQIDTTWHFDGEVFDSLQFGIKRRDGGIHRNTGNNYWVCPGTDPGDYDNRYWNGRCNAIATQFSPGLLFAQDNLAGGVNASAFPAINFPGYIGYLNQTYGAMQTRSEDNFVYNVDEEIYSTYLQLNFHTERLRGNVGVRVARTGQRADSTDKVTAYNDYFFDGADGNPLACQQGAATPGGAPADTYCGTEGYWRLADSVQRTESFVVSGLDRNYTDVLPSFNLAYDLTENLLLRAAASKVIARPSYNDIAAPGSLEFYSPEYVADRRLTGGASEQGWYGSGSNKNLEPYKANQFDLGLEWYFHPGSVAGVGLFRKNVENFAVDVISDVNMMVDGQLVTVQNYSTQAGGQDAVSQGVELYAQHTLPFGLGVQFNYTYNDASKAAVRLEDGTEAGKTSMPGSAKNQTNLTVFYETDSLLLRASYNRRGELVQGLVNGLNVFEEPYYQIDVNAAYNITPALSLTASVLNLTKQEFRSHLGDDTRARFYTGGYAGRLAYLGLTYKF
>NZ_CP009037.1|WP_011051224.1|2759190_2759709_-|hypothetical-protein
MSQATAPAIDRDDFSTESDFVDSFVGKLSKGRTSFGKVEITKEWDHRAGVVDVLARHRRKTLVAFEAKLNNWKRAFHQAYRSTAYANKSYVIVPAHVAARALRNRDEFELRGVGLCSFDGKSVEVLIEASEQDALLTWLRAQAHEHFDSLKDDERAAKSRSGCRAAVSAMRI
>NZ_CP009037.1|WP_011051225.1|2758403_2759252_-|serine/threonine-protein-kinase
MSAQLNLDLVAEQLCQQCGFEFKGLLGKGAFKSAYLSVHKSYPFALKIAAIAGDANRLVREADALKECSHASVAKLLQAFSYAHGTHHLWVVYEEYLGGGTLEARLKLGALPPAVVRALGVRLAEVLEHLESKRLVHRDIKPANIMFRDDRDPHPVLTDFGIVRMLDQPTLTHAFMQMGPGTPAYAAPEQLTNDKALIDWRTDQFGVAIVLAECLLGHHPFLEPGKTINDAIISVAAKHEMPATNAQRLTAMGFGCITRALKPWPVSRYRRPSDFIKSLTQA
>NZ_CP009037.1|WP_011051226.1|2757239_2758394_-|hypothetical-protein
MASYLQFGHDSWNLLEEADIGAYTGLILSPVNDGPTDVQTRLARLGTLRDRLEVILDPQMYNPAVEKGKMDQWSYFPADFATADHADIGWWTTRTRAIVDEGARLGVDAVCSPALFPRAFTDDYYSLMVEVADATKQYADQHEIQTMLTAVVSLRDLANPTRAMAIASILSRSSCERVYLTFVNEDVPPREPLKDGAGIPTAVHLVRLLSAEMRVHVAFVSHDLILWKLAGATDISTGKFMNLRRFSPGRWQDEEAGGRQVAYWNEGPLLARLREADVALLLRHGWFEGRDMSGNPSEARILEIIRGGTRTAWLKLSWMQYLRWASNMEALWHGNPTLAEASLDTADRNWSEIVDRRKLLFQDRFNNGDHVRAWMNAVRESRIR
>NZ_CP009037.1|WP_011051227.1|2756032_2756449_-|type-I-toxin-antitoxin-system-SymE-family-toxin
MTRRRPPTASASARPTRTRARPTPPKRVQWVVVEPDRTKLPPMLPPDPDASPQGPGTLRAPRRARRPRQCTVSYTHYPGAHDHAGDQHVPHVRLSGLWLEQLGFAIGTKLRITASEGQLLMEVLPPVETPAKARNVRR
>NZ_CP009037.1|WP_011051228.1|2755310_2755946_-|hypothetical-protein
MIARPLYALLASLALGACAHTAATPAPATVTETSAMNSSAESKVTPAGGEPSGPIRTAEDALTRMLALIQAIDGLDDLTPDYLQSKMGVPVTHAAADPKRYGASAPLTSEWGYSFGMDQTPTAGRWFEFTFIPAQAGASPSMTEICGIDFETFTKKLENIGFVRQRNMVEDGRWMSDFFTRPGMRVEVFPRGEAAKPQVLVAHKCIEWVYI
>NZ_CP009037.1|WP_011051229.1|2753982_2755197_-|IS4-like-element-ISXac1-family-transposase
MRASEVLQKCLSNSLSGMHALRQRTLLGAVEALVHGGRLTLIDIARAWPGATRVRAPLKACDRLLCNRTLQAERSMIERDMAHWLLRGDQPVIVIDWSDLRPDKSWCLLRAAVPIGGRTLTLLDMVVAGKQQGSPGAEKRFLQQLRRMIPDDVRPILVTDAGFRTPWFRAVSAMGWDWVGRLRGRTQVKPQDVPDDAAQWIDSRRLHALASNRACELPPMQANRSDPLDCRLVLYAKTRLGRQQRNRRSPAKVSRASSSLKAAAREREPWLIVASPQLQAPSAKHLVNLYARRMQIELAFRDLKSHRYGQAMEDSLTRRGERLQILLLLNTLATFASWLAGLGCEATGIAQWLSPRSSTRKLYSTLRVGRQALARRWPMEPVSRWLERLRTLPEAVREQMTLVL
>NZ_CP009037.1|WP_003489692.1|2767596_2767905_+|STAS-domain-containing-protein
MSTVTLGEDLGIETSADLKQKLAGFLTQDGDLVLDAGEVRRIHTASVQLLCAFVQSRRQAGLHTEFDGCNDTFRDAARLLGVTDALGLPASNDNLKSVENAA
>NZ_CP009037.1|WP_002806565.1|2767901_2768267_+|response-regulator
MSARILVVDDSASMRQMVSFALTSAGFAVEEAEDGAVALGRAKGQRFNAVVTDVNMPNMDGISLIRELRQLPDYKFTPMLMLTTESAADKKSEGKAAGATGWLVKPFNPEQLIATVQKVLG
>NZ_CP009037.1|WP_011051221.1|2768300_2770307_+|chemotaxis-protein-CheA
MSMDLQRFHATFFEESREGLDAMEAGLLSLEEGNRDPEIINSVFRAAHSIKGGAATFGFDAVAGLTHVLETLLDELRSNKRQLEPNAVDAMLGSVDVLRALLREAEHGTPADPAAVKAVHTRLNAVLAGEAPAAAAVAKPKEEEPEAWHIGFTPAPSLFMSGNDPLRIIRELEHLGPLQIAARLERMPGFENIDPLEAYLAWDLGLIGKIPRSKIEDTFAWVVDDCELDIRPMAVPGPPPSLAVDAPGAAPVAAVAAAPSAVAEPAAAATPAKAAAAEAESSIRVSVDKVDALINLVGELVITQAMLKQVSTGLDPAHAEQLFAGLDLLERNTRDLQEAVIGVRMLPVDAVFRRFPRLVRDLSSRLGKQVRLRTIGESTELDKGLIEKIADPLVHLVRNSIDHGLEMPDARRASGKDETGTITLAASHQGGHIVIEVSDDGRGLNRAKILEKAAERGIAVPDNPTDAQVWDLIFAPGFSTADAVTDLSGRGVGMDVVRRNIQGLGGEVQLESNAGSGTRVLIRLPLTLAILDGMTVSVAGETLILPLSYVLEALQPAPEDVRAMAGDGRVLRVRGEYLPILSLTNYYGFGGQQSSKESLVVVVEGDGQKIALEVDELLGQQQVVVKNIENNYRRIPGVSGATILGDGRVSLIVDIGGLVRSLKVPQAA
>NZ_CP009037.1|WP_015463128.1|2770546_2772832_+|methyl-accepting-chemotaxis-protein
MNWFRNLAVARKLAVAFSFTALITLSLGGFALARMQSSAHLLREIGTVWAPAVQQLSEMRALLGEFRTYELAQLAHADDPKAVQNYFERMDKARADVATAQDAYAKTTTAGRETELYDEVKLKLSDYYKANAALSAAVRAGDLVTANRVSDEQSRPARRDLFAKLVELTKFNVAHMDSEIAQAEATYRRSVHVMLVAMALFVLLAAFSGWFIARSIAGPLGRATRVASAIAQGKLDNAIHVDSRDEAGQLLHSMEGMQRQLQAVLAAQSEMAKRHDAGQISYRMEHDAFPGDYGTMVRDTNSLVGSHIAVKMKLAQIMSHYAIGDFSQDMDRLPGEKAVLSSTMDTVKANLSAMNGEIKLLAQAAANGDFSVRGDTQRFQYDFQAMVESLNQLMATADANLGSLSKLLQAIAAGDLTERMQGQFNGVFAQMRDDANATTAQLADIVGRIQHATLSINTAASEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVRQNAEHARQANQLAIGAATVASQGGSVVSQVVTTMSGIEVSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSANAAKEIKHLIDDSVSKVAEGSVLVDRAGKTMADIVASVQRVTDIMGEISAASQEQSAGIEQVNLTVTQMDEATQQNAALVEEATAAARAMEEQAGQLSDAVSIFKVQQVAAVAPAAKRPAPLRLAAAKPGATKPTTTKRAPAPAGVAAKATATPRPVAATAGNSESDWQEF
>NZ_CP009037.1|WP_011051219.1|2773151_2773685_+|hypothetical-protein
MHTANSNRSARTVLGCVFTVALLAAGVSLPPSFAAPAAPVSVLLDNVPVTALQSLAVDLAQLRDDQRAQLAARHDAARIDAYDERLGNLHQRIARHAGYFQATAPQGEQARKFALVQQLLGKYLAQHRQANRALHEGDLQYAQALSLGHSGDTRHVLWTELQSLQQSVASANVAQRN
>NZ_CP009037.1|WP_005931838.1|2774208_2776386_+|methyl-accepting-chemotaxis-protein
MTLKTTVAKTLANVPLKRKFFAQTALVALGIIALAVIAARMQYVDLTDTRRDGLKSQIEMAIAVVNGYAERAEKGEIDVETAKKSALHTLSTMRARGGVDYIYVTDQTPTMLMHPTRPDLVGKPLSDVLSPDGKRVFPAFVTAAQAGGGYVDYTWAKPGQKDPVQKTSYAALYKPWGWVIGTGVYLDDTQSQALVFTGIVAIAGGALVLINLLVGWMIGNSILEPVSRALAAIKGVARGDLSVRTAEHGTDEIGQMLKATDEMVHTLERFSAQTKVMVHMHAGDDVTHRMPTDFPGVYGELATGINTMIFEHLDAIVDAIGILNEYAQGDLSRNAARLPGTRAVLHEAMDAAKASLLAINTEIKRLAQAAANGDFSQRGDATRFKHDSARMINDLNAMMEVSDRNLGKLSELLASLAEGDLTARLDGQYHGVFARMRDDANATATQLAGIVGRIQQAASSITGSASEIAAGNNDLSQRTEQQAASLEETAASMEELTSTVKQNAESARQANQLAIGAASVASQGGQVVSQVVDTMSGIQTSSRKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKHLIDDSVGKVSEGSLLVDQAGKTMAEIVSSVQRVTDIMSEISAASQEQSAGIEQVNLTVTQMDESTQQNAALVEEATAAANAMQQQAQQLDEAVSSFRIVAAASNQFGHAGARAPTRVALAAH
>NZ_CP009037.1|WP_015472221.1|2776457_2779247_+|HAMP-domain-containing-protein
MTSPSTHSRFSGRLAYRLMFGTAVIASLCFGLTAAITYWQSSRALSASAQATMQNAARYQAEQIGSDLGQALTTGQSLATTLLVQRANGGISRDSAAAVVHDQLLDHPEWVGMGTLWEPQAFDGKDSAFANATGHDATGRFMTYWGRSDQTLVREPLTDYETPGLGDWNLKPRALLRQTVAEPYDYKIGGKTVLMTTLSTPILQDGKYLGAVTVDVALAALQQRLGALRPMQDGYVELLSPAGVVLASHDTTRIGKQVTDARHRTMLEAIKAGKDALDFTPDADGAVSAYVPLQIGKAQERFALGVVVPYATIMQQAHHLLWTILAVGLGSALVLSVALFALLRRQVVRPLEAAAHVADAIASGKLDNQITVQRQDEVGRLMGAMQRMQSDLRERIERDAQVANENLRIRTALEHSEMEVLLADEQHNAVFITQALHTSFKQGEPAFHAKGQTGFSADAVVGKPMDYVFGNDSEGTARTQRLRQLQSTSTERYRFGPVTLDLTMTPLYAPDGRRSGSMLLWRNISAEVSTQQEVAELVQSALMGDFGQRLALEDKHGFYLEFGRQLNGLLETTSLSLERISSLLSALAEGDLTVRMDGDFQGVFARMRDDANATVAQLTGIVSGIQTSATQISAAASEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVKQNAEHARQANQLAIGAADVASHGGSVVAQVVTTMSGIETSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIDDSVSKVEQGASLVHQAGTTMSEIVASVQRVTDIMGEISAASQEQSSGIEQVNLTVTQMDEATQQNAALVEEATAAARAMEEQAGQLTEAVAVFRLNHAVKPVLAAPTGTPAVRAVATTKPAPARGKRAATPLRQSVGKSSGTAVNDSQWQDF
>NZ_CP009037.1|WP_015472222.1|2779543_2780305_+|transporter
MKPSVIASCFVLLGMMGQARAEDPIATDRPDFVESSLTVGDRRVQVETSVAWERDDAVDAYSTPTLLRYGLGQTWELRMETDGWQRIDLPGDAQVSGMSDVSLGIKHHLASSDDGKTSLAWLLHVDLPSGAQALRGHGTRPSFRLVAEWELSDSISAGMMPGVIWDDDGQGNRYTAGIFGAVLGKAWNDRVRSFVEVALPQIANSDDGGTVALLDIGSAWLLSNDVQLDAVYSRGLNDRSPDHALGVGLSFRF
>NZ_CP009037.1|WP_040236987.1|2780318_2782691_+|chemotaxis-protein
MKIMHMLGVLVLVAALALLALGGVGYNGQRGLLDAIAAQVISSDALRNHMQADMMHDALRGDVTAALLAASTRDDKAVAAARTALGEHAGEFRESLAANRKLPLAPALRGELDAVTPALQAYIASADHVVNAAETHADSAAAYADFNDKFGQLQTRMGAISERILALNEASRRQAEQDSHRVMWQQGSAVVLALVCLALAAGWILRSVFGLLGGEPQLAMAAAQHIAEGCLDQPIPVAAKHSRSLMAALARMQRDLRERLERERSIAAENLRIRTALDNASTGMYIADPDLTIIYTNGALQDLLHTYADDIQACAPAFHRTANLVGQPVSLLEVGNAQDAEIYQRLDRQGAAQREVQYRSTCIAQNVSAIRDETGAHLGFVCEWRDRTAEARVEIDVADVVRSAAAGDLSKRIDSAGKQGFFLQLAQQLNALLDANAVSIAEVSRLLSALADGDLSARMQGDFHGVFATMRNDANTTAEQLALVIGRIQQAAGSIHTASSEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVKQNAESARQANQLAIGAADVASQGGAVVAQVVTTMSGIEVSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIDDSVSKVAEGSQLVHQAGTTMADIVASVQRVTDIMGEIAAASQEQSSGIEQVNLTITQMDEATQQNAALVEEATAAARTMEDQASQLAHAVSRFTLADAPPSQAATPAAKKAAVVAVARASKTSTRAPGARKPAVNAPAATAGNDGQWQDF
>NZ_CP009037.1|WP_015472224.1|2782911_2785170_+|HAMP-domain-containing-protein
MNKFNDWPIRRKLMFAFCLSAVLTALLGGLGFSRMKQMQSETTLINQDVVPVLSRLSELRGFAGEFRVYEVGQFLNLEDPERYAYFFKRMDEIQAKYADTQKQLDAKIDAASPLKAEYDKLTDASARYFAANQQLRKLYAEPDRAAAMEFSRKQSGEIRKELFASVDKLYAQQSKALGDMVSASASSFKLTSAVLLIGTLLMAALSVTFGWLIARSITSPIAKALGAIRAVSRGDLGVQVGKTSKDEIGQMLDATGGMTQMLRRFSDETARMSHLHAAEDITHRMPEDFPGVYGNLATGINTMIFEHLDAIVDAVRILNQYAQGDLSEDARRLPASRAVLHEAMDAAKASLLSINTEIKHLAQAAASGDFSARGDAQRFKYDFAVMVSDLNSMMEVSDRNLGKLSQLLGAVADGDLTARMDGQFHGVFARLRDDANATTQRLTDIVGRIKHSTLAINTAAGEIAAGNNDLSQRTEQQAANLEETAASMEELTSTVKQNAEHARQANQLAIGAAGVASHGGNVVGQVVTTMSGIETSSKKIAEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKGLIDDSVSKVAEGSALVNQAGSTMAEIVSSVQRVTDIMSEISAASQEQSAGIEQVNQTVTHMDEATQQNAALVEEATAAARSMEEQAQQLTEAVAQFRLSAELEAVTRATPVVRHIAAKRPVAASMPASKPHAARPAGRAAAAVAPSNESDWSEF

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Crispr_ID: NZ_CP009037_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009037_6

2905904-2905989

Orphan

Consensus_repeat	Method
ATTGATGTCGTTGCCGGCGCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009037_6

>merge|NZ_CP009037|6|2905904-2905989|CRISPRCasFinder
ATTGATGTCGTTGCCGGCGCTGATCCCTAAGCCCTTGCCTGCATCAAGTTTTGCGGCGACCAGATTGACGTCGTTGCCGGCGCTGA

>NZ_CP009037|6|6|2905904-2905989|CRISPRCasFinder
ATTGATGTCGTTGCCGGCGCTGA	TCCCTAAGCCCTTGCCTGCATCAAGTTTTGCGGCGACCAG
ATTGACGTCGTTGCCGGCGCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009037.1\|WP_005922621.1\|2901797_2902205_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182993
NZ_CP009037.1\|WP_011051154.1\|2922808_2924062_+\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	unknown	unknown	gnl\|CDD\|236882
NZ_CP009037.1\|WP_011051155.1\|2920906_2922805_+\|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB	unknown	unknown	gnl\|CDD\|274867
NZ_CP009037.1\|WP_015472247.1\|2896914_2897286_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_015472248.1\|2897312_2901605_-\|hemagglutinin	unknown	unknown	gnl\|CDD\|379124
NZ_CP009037.1\|WP_005916283.1\|2927141_2927426_+\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_CP009037.1\|WP_015472251.1\|2916533_2918234_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP009037.1\|WP_015472245.1\|2894459_2894960_-\|tryptophan-rich-sensory-protein	unknown	unknown	gnl\|CDD\|320706
NZ_CP009037.1\|WP_011051152.1\|2928201_2929257_+\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NZ_CP009037.1\|WP_011051151.1\|2929253_2930306_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|234593
NZ_CP009037.1\|WP_015463098.1\|2895037_2895754_-\|S-layer-family-protein	unknown	unknown	gnl\|CDD\|225751
NZ_CP009037.1\|WP_003490761.1\|2924058_2924505_+\|poly-beta-1,6-N-acetyl-D-glucosamine-biosynthesis-protein-PgaD	unknown	unknown	gnl\|CDD\|188455
NZ_CP009037.1\|WP_011051153.1\|2927422_2928196_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP009037.1\|WP_011051163.1\|2891362_2893870_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	unknown	unknown	gnl\|CDD\|181856
NZ_CP009037.1\|WP_045123414.1\|2890352_2891321_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP009037.1\|WP_015463095.1\|2918966_2920925_+\|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA	unknown	unknown	gnl\|CDD\|274868
NZ_CP009037.1\|WP_011051160.1\|2896002_2896914_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_003482014.1\|2925088_2926621_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143448
NZ_CP009037.1\|WP_011051166.1\|2888497_2889802_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP009037.1\|WP_015463099.1\|2889963_2890278_+\|EthD-family-reductase	unknown	unknown	gnl\|CDD\|131173

Protein	Function_ID	Function_description	E-value
NZ_CP009037.1\|WP_005922621.1\|2901797_2902205_-\|hypothetical-protein	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0.0036635
NZ_CP009037.1\|WP_011051154.1\|2922808_2924062_+\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	0
NZ_CP009037.1\|WP_011051155.1\|2920906_2922805_+\|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB	gnl\|CDD\|274867	TIGR03938, hypothetical_protein_Pcar_2791, poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB. Two well-characterized systems produce polysaccharide based on N-acetyl-D-glucosamine in straight chains with beta-1,6 linkages. These are encoded by the icaADBC operon in Staphylococcus species, where the system is designated polysaccharide intercellular adhesin (PIA), and the pgaABCD operon in Gram-negative bacteria such as E. coli. Both systems include a putative polysaccharide deacetylase. The PgaB protein, described here, contains an additional domain lacking from its Gram-positive counterpart IcaB (TIGR03933). Deacetylation by this protein appears necessary to allow export through the porin PgaA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP009037.1\|WP_015463098.1\|2895037_2895754_-\|S-layer-family-protein	gnl\|CDD\|225751	COG3210, FhaB, Large exoproteins involved in heme utilization or adhesion [Intracellular trafficking and secretion].	3.95844e-14
NZ_CP009037.1\|WP_015472245.1\|2894459_2894960_-\|tryptophan-rich-sensory-protein	gnl\|CDD\|320706	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family. This family contains tryptophan-rich translocator protein (TSPO), an integral membrane protein that is highly conserved from bacteria to mammals. In eukaryotes, it is mainly found in the outer mitochondrial membranes of steroid-synthesizing cells of the nervous system where it transports cholesterol into mitochondria. It is known to be highly expressed in metastatic cancer, steriodogenic tissues, as well as inflammatory and neurological diseases such as Alzheimer's and Parkinson's. TSPO is also known as the peripheral benzodiazepine receptor (MBR) and its ligands include benzodiazepine drugs, implicated in regulating apoptosis. In human, a single polymorphism A147T is associated with psychiatric disorders; the mutation causes structural changes in a region implicated in cholesterol binding. TSPO is homologous to bacterial tryptophan-rich sensory proteins, and their tryptophan residues are believed to be functionally important. In bacteria, TSPO acts as a negative regulator of expression of specific photosynthesis genes in response to oxygen/light; it catalyzes a photooxidative degradation of Proto porphyrine (PpIX). R. sphaeroides TSPO (RsTSPO) is involved in porphyrin transport, similar to human, while Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism.	2.25803e-43
NZ_CP009037.1\|WP_015472251.1\|2916533_2918234_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	6.32832e-135
NZ_CP009037.1\|WP_015463099.1\|2889963_2890278_+\|EthD-family-reductase	gnl\|CDD\|131173	TIGR02118, TIGR02118, conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate. [Hypothetical proteins, Conserved].	1.63833e-35
NZ_CP009037.1\|WP_011051152.1\|2928201_2929257_+\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_CP009037.1\|WP_011051151.1\|2929253_2930306_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|234593	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase.	0
NZ_CP009037.1\|WP_015472248.1\|2897312_2901605_-\|hemagglutinin	gnl\|CDD\|379124	pfam13332, Fil_haemagg_2, Haemagluttinin repeat.	4.94434e-34
NZ_CP009037.1\|WP_003490761.1\|2924058_2924505_+\|poly-beta-1,6-N-acetyl-D-glucosamine-biosynthesis-protein-PgaD	gnl\|CDD\|188455	TIGR03940, PGA_PgaD, poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD. Members of this protein family are PgaD, essential to the production of poly-beta-1,6-N-acetyl-D-glucosamine (PGA). This cytoplasmic membrane protein appears to be an auxiliary subunit to the PGA synthase, PgaC (TIGR03937). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	3.2987e-53
NZ_CP009037.1\|WP_011051163.1\|2891362_2893870_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	gnl\|CDD\|181856	PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional.	0
NZ_CP009037.1\|WP_045123414.1\|2890352_2891321_-\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	1.57822e-94
NZ_CP009037.1\|WP_005916283.1\|2927141_2927426_+\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	7.34574e-11
NZ_CP009037.1\|WP_011051153.1\|2927422_2928196_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.72034e-18
NZ_CP009037.1\|WP_003482014.1\|2925088_2926621_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143448	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.	0
NZ_CP009037.1\|WP_011051166.1\|2888497_2889802_-\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP009037.1\|WP_015463095.1\|2918966_2920925_+\|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA	gnl\|CDD\|274868	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA. Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats.	2.80065e-100

>NZ_CP009037.1|WP_005922621.1|2901797_2902205_-|hypothetical-protein
MGQEEQVVTNIFGEDFISGSGVSRDVGPLGDRVYYSLVNDGIELIFSDNRLAQITLHIKPGDDFRSYDGNLPAGLSNEMYFDEVVGLLGSPDVSGGGNDDPLLGRIYPWIKYENMCPKIHIEMGFKGGIERISLS
>NZ_CP009037.1|WP_015472248.1|2897312_2901605_-|hemagglutinin
MDPEWTQTRLGDGFYEQRLVLDQITELTGRRYLGNYADGVAQYRALLESGVAAAGQLQLSMGVGLTAAQAAALTQDIVWMVEQECQGQTVLVPVVYLASNSLQLRGNGALIAGGDVELNATNTLSNQGVIAGADVSITAGNLLNQGRIGGTGSVALEARNDLLNQGQIQGRDVALVAGNNLVSEASKAINGVGILSGISASNTLQLMAGNDMTLTGTRVQAGGSAALIAGNNLSLTPSALRDDNGLLRGGDVVSVTTGKDLFVSAGNDLQLHGVTIAAGGSAALQAGNDLSLTPTTGLDGKVATRTSINTGDSLQLTAGNDLTIRQAEVKAGGDLIAAAGNNLNVESVVNDSQSNSDNSRNGKTRVTTTTTTQTIDQQALTAGGNLILSAGNDVNLVAAKLDAGKGLGISAGNDINASTLTTVDTSDTLETRKRFKQTTATRDETVHGTEFSAGGNLAMQAGNDITLTAASAASKEGGITLAAGNDVNLLAASEQHDAVQDMTKKKKGTFSSKTTTTHDEWHDNVAVTATLSGDTVQIAAGNDLLSQGAQVASTGDVVLAAGNNLTLDTVQNTHSEEHEKTVKKSGLYGGGGFSVALGVTKKTDGLDVTEVTNTGSLVGSTDGAVTMTAGNKVSITGSDVLSATSTTIVGKEVTIAAAENTVDTVQTSKQQSAGITLGLTGGAVDAAQAIYGAAKRGSEVEDDRLKALYAAKAGYAVSDTVGLVSNGLKGYDGQAVAGNTTKTGAAAADGAQGAANAAGVSLRLGIGASSSSSKTTTHEETTGGSRILSNGDITIAATGGDLNIIGSKIAGENVALAAANNLNLLSNKETNTTKSENKNAGGEIGISVGAVTGYYLSVSAGKGSAKGNSDLRTESVVTANDTLTLVSGNDTTIQGAQAIGNKVLANVGGDLLIKSEQDTNEYKSKQQQASLTLATGTGSGGSYSQQKVNSSYTSVTEQSGIQAGNGGFDITVGGNTALVGGAIASAADASLNRLSTGSLTVEDLQNKAEYKTSGVSVAGGTGSSMASMAIGTGLSMLGNSSDSSSSTTKSDIAAGTIQIRNGDESALAGLDRSATELQQSGLKEIFDQKKIEDQKELMGLAGEIGFRVAGDVASAMYQKAQLDLASAPDEASKAQALARLDAWSDGGTNKILLHGLTGAAIAALGGENVLQTAAGAAGAEAAKVAMSDYLVKNGVTDPATYNALMELGSAALGGIAGGQVGATTALAGDQFNRQLHPDEVTWIRQNAEAFALQEGISVIEAKQRLTVEAAAQVDAVIAKKVGIENIDTEALAFLNSNKNQYKWGQAFKATDDEYANFHQYGNILANNPDQFREVYNALGASGIAKDSLQQVYQSELLAWSTATRGSDGVAMLETFTGDVGMAAGIIRNIAQGDTQAAGTSIALAAMPTIVGKQLVPCCAHWRRRLMRRSG
>NZ_CP009037.1|WP_015472247.1|2896914_2897286_-|hypothetical-protein
MNAKNELTWINPLTGVKEAVPATAKIHVDHVLPQNAIRQIEGFDSLPKGVQNEIMKDPANLQPMIKSANCSKGCKVEAEGAGWMTWNGKPVSEKYKMYLEEAQQDFRTKVSKIIDDNNALKGK
>NZ_CP009037.1|WP_011051160.1|2896002_2896914_-|hypothetical-protein
MKNLSGRSDRPWELMGVFKDEFILEFNGGIYSDVNGICDKYNFLHERDGAGYRNVGYSGLLLNGKSWIIEPLRLLQPNSYQAFQEAAEPLLLGVMLIEDLRNPGGPPMVRPILFLEVHGRMVEVFATFPGSTYEDGNDCFGSLLSLPDGLAKSWLWRTDGWRIPGSVGEGPMTNRQLIGHPSSRWRDADTYLDSLGKGWKKKYLPKIKELFPDAVTNINGVKRIKFRCFLDTRPVGVGGPEGDQFFVCSTRQDQVVYHVHEGDVENLRVLCNPEDAIDRYCAHVLRRKPGQFDFSDWSEPFRP
>NZ_CP009037.1|WP_015463098.1|2895037_2895754_-|S-layer-family-protein
MGRAATSLGGINAWRSNGPGRRYLIETDPRFVNYDNFISSDFLLDKLGVDPEWTQTRLGDGFYEQRLVLDQITELTGRRYLGNYADGVAQYRALLESGVAAAGQLQLSMGVGLTAAQAAALTQDIVWMVEQEYQGQTVLVPVVYLASNSLQLRGNGALIAGGNVELNATNSMSNQGVIAGADVSITAGNLLNQGQIQGRDVALVARRTPILSSTSVLESNSPGDLDMTLPIRTALVEL
>NZ_CP009037.1|WP_015472245.1|2894459_2894960_-|tryptophan-rich-sensory-protein
MTQHRLNTSQWFGLLGWLVLCYAVAALGAMASIQAASFYAQLQRPAWAPPGWLFGSVWTVLYGMMAVSVWSVWRRGGWAGARVALTLFLVQLALNGLWSWLFFAWHLGAWAFTDIVALWLVLAATIGVFAKRQALAAWLLVPYLAWVSFAAALNFSVWQLNPQMLG
>NZ_CP009037.1|WP_011051163.1|2891362_2893870_-|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I
MSSHAVSFEPAAVLASSARTVVHKFGGTSVADAERYRHVAQLLLARDETVQVTVVSAMKGVTDALIELAELAAKNRPEWRERWHETRARHRGAAVALLGEHSGPTVEWLDERFAHLSQILGALAVIGELPREVLDRVQGLGEVYSAQLLGDHFRAIGEDCAVLDARDVLVVNRGELGVDVDWEASAQRLATWRQAHPQTRVVVTGFVARDRADRVTTLGRNGSDYSGAIFAALFDADELHIWTDVDGVLSADPRVVPEAVQLETLSYDEACELAYFGAKVVHPQTMSPAIERGLPIIIRNTFQPEHPGTRITASSAVSGPIKGLTLSPDLAVLNLEGTGLIGVPGTAERVFAALRTAQVSVVMISQGSSEHSICCVVKQHESERARNALLQAFAHELTVGQVQRVQLTTGISVLAAVGDGMAGQPGVAARLFESLGRAQVNILAIAQGSSERNISVAIDAAHATKALRAAHAGFWLSPQTFSVGVIGPGNVGAALLDQLRNAQPQLLGKANLDLRLRAVVSRGRMLLDERGLVGDWRDAFASSATPTDLERFTTHLLSAHLPHTVIIDCSGSAEVADRYAGWLAAGIHVVTPNKQAGSGPLARYEAIRAAADASGARFRYEATVGAGLPVITTLRDLVDTGDAVTSIEGIFSGTLAWLFNKYEGSVPFAELVTQARGMGYTEPDPRDDLSGVDVARKLVILAREAGRSISLEDVQVESLVPEALRQASVDDFMARLPEVDASFAQRLAQAHARGNVLRYVAQLPPDRAPSVGLVELPADHAFANLRLTDNVVQFTTRRYCENPLVVQGPGAGPEVTAAGVFADLLRVAAGEGARL
>NZ_CP009037.1|WP_045123414.1|2890352_2891321_-|homoserine-kinase
MAQGQGSDHASLGKHGLHEARAFAPASVANVAVGFDLLGYPIDGVGDTVTVRRIDAPVVRIAAIRGTTVALPLDAERNTAGAALISLRAALQLPYGFEIEIDKGIALSSGMGGSAASCVAALVAANALLASPLDHHQLYQYALDGEAVASGSRHGDNLGPLFVGGLVLCTLERLVPIAVPPAWHSLLVHPDAVLETRRAREALAGNYQLREFVAQSTNLALVLAGCHGGDADLVRAGLRDVLIEPRRAPLIAGFAEAKQAALDHNAFGASISGAGPSVFAWFESRAAAEAAAPAVQAGFAAVGFDSQAWVSPIASPAARLLE
>NZ_CP009037.1|WP_015463099.1|2889963_2890278_+|EthD-family-reductase
MIKVSVMYPYRDGARFDHAYYRDRHMPLVSARMGAACLKYTVDKGISGGDAGSPPAFIGMCHIFCESVETFNASFGPHAQEILADIANYTDLTPVMQISEVVVD
>NZ_CP009037.1|WP_011051166.1|2888497_2889802_-|threonine-synthase
MFISTRGGAPAASLSQAIAAGLAPDGGLYVPQTLPPARTLVAGAGLADTATALLQPFFEGDALAAELPAICAEAFDFPAPLVALGTPGDYALELFHGPTAAFKDFGARFLAACLTRLRRAEDRPLTILVATSGDTGAAVAAAFHRQPGLRVVVLYPDGRVSPRQAHQLGCFGDNIQALRVAGSFDDCQAMVKQALNDAALQTQVPLSSANSISLGRLLPQMSYYAHAALQHHAASGSVLNLVIPTGNLGNALAAIIARALGVPLGRIALASNANHVLPDYFAGDAYAPQPSVSTLANAMDVGAPSNFERLRWLYNGDDAALREEFRALSVDDAAIRNTVQQRFARYGEVHCPHTATAVHVLEQLRAEGAEGGTGDWAVAATAHPAKFEGVVEPLIGRSVEVPPALAALLQRPAHAEALAPDYAALRQRLLADAT
>NZ_CP009037.1|WP_015472251.1|2916533_2918234_-|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MWMRSAPLALAVCLWAIAGLAAAQQSAPTTLDRQEQLRQAEEIQRRQEQERQAPFAGPREEADLVDARSTVLPKEDLCFSITRVRLSGAGDDAARFAWLWTSLRRYQGRCIGHAGIDIIRRRALDQLVARGLVTTRIGVPEQDLSRGELRFELMPGRLRAVRVVSDTEGAHWKTALPLRTGDLLDLRAIEQAVEQFKRLPSQDAKIDIAPGEAPGESDLVITLQHGRRWRGVANADDSGVEATGRVQGGLDVSLDNPLGLNDLLSIGYSHDLATRDEERGTRGNSLSYSLPWGWWTFALSASSYRYHQRVDGFLQTFRSSGESGNAQLDIQRVLHRDGTSKTSAGVVIGRRRARSYLDGVEIGIQRRDTSSAEFYLTHRRYLGTMQLDMRLAHRRGTPWFNSQWTGYAPQIGFPTFRYGVTTLDISTALPFKLGPVPMAWESSLRAQTAGELLLGSEFVTIGGRYSVRGFDGEATLGAEKGAYWRNTFSFPVQQIGLTPYLGLDAGRIDGTSANGLRGRSLVGGAVGLRGGWFGASVDAFAGWAIHRPDGFGSAQPAYGARVIYQF
>NZ_CP009037.1|WP_015463095.1|2918966_2920925_+|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA
MQQAEQFRGRQRYADALAIYERVLHADPRDRGAYTMRALTLSDLGSAQLAAEAMWRHPNWFSQQERERLDNDRVARMIGWASAEPVDATHRYAETDQALANAARIQRDAPPQAAWEATRLRVDSLVALNQRQRHRDVIANYQALRAEGVDVPAYVLPTVGDSLMGLRRPAEAESVLRQALQHSPNDFNTQLLLGYALLEQERFDEAMPLFESLAATQAPWPRREGATSGYENWDRFSADIALATARSAANDNRGAEALLRERAAIGPDNAELQAALASIEARRGQTMQALQRNRMALTLDPHQKQARSGVVEAQRDLDRLDLADAAFASLQQEYPDDAGLQRLGASLERQRGWQVHLSHAWGRSENDTLTNSTSPLGNHFGSSLLEAESPLLGERWRVGLRARDDWADFQATRVRYRSFWLGAHYRYDRLDFSAYGGRALDDFDRDGTAWALDAGWRFSDAWYGSVAWRTRDPEASLQARRLGITGDSIGAAVRWTPSDESRWELQARQLRYSDGNRRDQLDLFGSQRLWANPHVLVDGLFAASAGRAEDDRAVDYFNPRHSSAVAAGVRIEQIGWRRYDDAFRQRLEVTAGPTYQSGFGSRWVPALAYRHLWSLGDGSALSYGVSWSRPVYDGQREQQLGLDLDFRWGGTP
>NZ_CP009037.1|WP_011051155.1|2920906_2922805_+|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB
MGRYAVIRLPLLLVALLLMTFASSAQAGLLVLSYHDIRDDVAAKGDPDRYAVSTSNFAAHLDWLRSHAYHPVSVQQVLDARAGKRDLPSRPVLLTFDDGLRSVYTRVFPLLQAYGYPALVAPVTSWVELPAGQVVPYGPRDFTRDDFVTWAQLREMQDSGLVEIGSHSDDLHKGIPGNPFGNETPAAVTRRWDVGNGYESEAHYRQRIETDLRHSRDAMVAHLGKPPRAMVWPYAAYNRASNEIAARLGMTLSFDLEGRSHEADIGQQGRDRVDGQSLASLGRLLLFNNPDVRDLAGELRRDLSRDGVRAIQVDLDYVYDPDPAQLERNLDVLVQRVKDIGPSHVFLQAFADPDGDGAADALYFPNRHLPMRADLFGRVAWQLRTRAGVRVFAWLPVLGFHLPDAQQQAALQIHGNDPKDVPRLDPGNPRTRQLVADIYEDLAANTYFEGLLFHDDAYLRDDEIPAYGNGDPAKRTQQLIGFTQELKAAAERWRPKLVTVRNLFAQPVLEPHSEAWFAQRLEAFASAYDYTALMAMPYMEQANDANAWLTQLATRVGQQPRGFDKTIFELQTFDWRSGKPLPDGVLLAHSKLLLAAGVRHLAYYPDDFIGGHPFLPEAREAISARQFPYLER
>NZ_CP009037.1|WP_011051154.1|2922808_2924062_+|poly-beta-1,6-N-acetyl-D-glucosamine-synthase
MTTSLLLAALFNFAFYYPIIMAFFWMIGGIYYYLRRERGTHRPSKPPPMASEPFVSILMPCYNEAKHVAETIAAMSAQQYADFEIIAINDGSTDRTAEVLDDLTHHHPRLRVVHLEQNHGKANALRVGTLAARSDYLVCVDADAILDPNATRWMVGHLIAGPRVGGVTGNPRVRNRTTLMGRMQVGEFSAIVGLIKRAQRVYGRLFTVSGVICAFRRSALHHVGFWSDNMVTEDIDISWRLQLDGWDIRYEPNALCWILMPETFRGLWMQRLRWARGGVEVLLSHGRRALAWRSRRMWAVLLEYALSLAWAYTMLLIIVLWLLGKFIALPPALYVDTILPRWHGLVLAVVCLLQFATSLMIERRYEKGLARQFFWVIWYPAAFWMIGMLTAVIAFPRALLARRNKRARWKSPDRGIQ
>NZ_CP009037.1|WP_003490761.1|2924058_2924505_+|poly-beta-1,6-N-acetyl-D-glucosamine-biosynthesis-protein-PgaD
MTPPIINLPQRLGRSRRLAYGAATAGAWMVYFYLWAPLATLIAWFFGLRSAYTELYLQHNALDPFALGSLPVIALMSAITTVGWAEYNRLRFVNADKRRRPRTVAEPDVDQRLGATEQLGTLLRHSRISSVAMDKFARPVAVRVVRHR
>NZ_CP009037.1|WP_003482014.1|2925088_2926621_+|aldehyde-dehydrogenase-family-protein
MSADLLKALDLAASNSGTYLGEATWSQATGAGVLQPLNPTTNAVIAEVQATTPEDYELIVQRAQAAFKVWRTTPAPRRGEAVRLCGEALRAHKDALGSLVALEMGKSKPEGDGEVQEMIDIADFAVGQSRMLYGYTMHSERPGHRMYEQYQPLGLVGIISAFNFPVAVWAWNAFLAAICGDICIWKPSNKTPLTAIATMKICNAALKDAGFPDIFFLINDAGTALSEKLVEDTRVPLISFTGSTQIGRVVAEKVARRLGRCLLELGGNNAIILDETADLKLAIPGIVFGAVGTAGQRCTTTRRLIVHASIYDTVLATLVKAYKQLDSKIGDPTDPANLMGPLNSQGAVAQFLDSIAKAKAAGGTVEVGGTAIDRPGNFVLPAIVTGLQNSDAVVQHETFAPILYVMKYSTLDEAIELQNGVPQGLSSSIFTQNLKAAEKFLSAAGSDCGIANVNIGTSGAEIGGAFGGEKETGGGRESGSDAWKVYMRRQTNTINYSDSLPLAQGIKFDL
>NZ_CP009037.1|WP_005916283.1|2927141_2927426_+|DUF4190-domain-containing-protein
MNVVVRQTSAMAIVSLVAGILGWTLIPFLGSICAIITGHLARAEIRRNPHGLDGDGLAIGGLIMGWLAVALWVVGIAFFLLFFGGMAWLAAANS
>NZ_CP009037.1|WP_011051153.1|2927422_2928196_+|class-I-SAM-dependent-methyltransferase
MSMATPSSAQRFNDRVAAYVRYRPSYPPQLLRWLHGELGVTPATAVADIGAGTGISSRLFLEAGYAVTAVEPNQAMREAALQWLAEFPKFQAIDGTAEATGLADASVGLVSAAQAFHWFDMQAVRDEWARILQPGGLAVVYWNSRELDSTAFLRGYEQLLLDYGTDYSAVAERYQDDATMQAWFGEGFRAMARFPNVQRLDFESLRGRLLSSSYAPLAHDPRHAPMLAALRTLFDAYAHDGLIDFQYQTRVFAGRLN
>NZ_CP009037.1|WP_011051152.1|2928201_2929257_+|quinone-dependent-dihydroorotate-dehydrogenase
MYSLARPFLFSLDAERAHALALRSIDTAYRTGTTALLARRPVPLPTPAFGLMFPNPVGLGAGLDKNGEHIDALFALGFGFVEIGTVTPRAQEGNPKPRMFRLPEYQAVINRMGFNNLGVDALVANVQRARRTGGLLGINIGKNKDTSNEEATSDYRYCMERVYPLADYITVNISSPNTAGLRELQEEQSLRRLISDLRETQEALSAQHGKRVPMLVKVAPDLNDRDIDAAARVLADLAVDGVIATNTTVTRTLVANHPLAAEAGGLSGAPLLGQSTLVLRRLRARLPESIPLIGVGGINSGADAVAKMAAGASLVQCYSGLVYRGPQLIGECVNAIRRRREAPSGGAVSPL
>NZ_CP009037.1|WP_011051151.1|2929253_2930306_+|UDP-N-acetylmuramate-dehydrogenase
MSDAVQTGWQLSEQAPLRTLNTFHVEATARWLLNVQAPEALPQALAAPEIAGQPLLVLGSGSNVLLAGDPPGCVLCFDNRETSIIAHRADHAIVRAGAGVNWHALVLYALQQGLSGLENLALIPGTVGACPIQNIGAYGAQVGDFIHVVEAFDRHSQQFVRLDAADCAFGYRDSVFKQQPERYLIVAVEFNLPLLHELRLDYAGIREELASMGAELAGAADVAQAVINIRRRKLPDPDVLGNAGSFFKNPLLPSEQIAALQASFADMPVYPGEHAGQGKLSAAWLIEQCGWKGKREGDAGVSPDHALVLVNYGTATGAQLLDFARRIAESVRERYSVILEPEPRIIGAHW

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Crispr_ID: NZ_CP009037_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009037_5

2905688-2905777

Orphan

Consensus_repeat	Method
ATTGATGTCGTTGCCGGCGCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009037_5

>merge|NZ_CP009037|5|2905688-2905777|CRISPRCasFinder
GTTGACGTCGTTGCCGGCGGCCAGGGTGATGCCGCCGTCCTTGGTGGCGGCCGATGCGGCGGTCAGGGTGATGTCGTTGCCGGCCTGCAT

>NZ_CP009037|5|5|2905688-2905777|CRISPRCasFinder
GTTGACGTCGTTGCCGGCGGCCA	GGGTGATGCCGCCGTCCTTGGTGGCGGCCGATGCGGCGGTCAG
GGTGATGTCGTTGCCGGCCTGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009037.1\|WP_005922621.1\|2901797_2902205_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182993
NZ_CP009037.1\|WP_011051154.1\|2922808_2924062_+\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	unknown	unknown	gnl\|CDD\|236882
NZ_CP009037.1\|WP_011051155.1\|2920906_2922805_+\|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB	unknown	unknown	gnl\|CDD\|274867
NZ_CP009037.1\|WP_015472247.1\|2896914_2897286_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_015472248.1\|2897312_2901605_-\|hemagglutinin	unknown	unknown	gnl\|CDD\|379124
NZ_CP009037.1\|WP_005916283.1\|2927141_2927426_+\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_CP009037.1\|WP_015472251.1\|2916533_2918234_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP009037.1\|WP_015472245.1\|2894459_2894960_-\|tryptophan-rich-sensory-protein	unknown	unknown	gnl\|CDD\|320706
NZ_CP009037.1\|WP_011051152.1\|2928201_2929257_+\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NZ_CP009037.1\|WP_011051151.1\|2929253_2930306_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|234593
NZ_CP009037.1\|WP_015463098.1\|2895037_2895754_-\|S-layer-family-protein	unknown	unknown	gnl\|CDD\|225751
NZ_CP009037.1\|WP_003490761.1\|2924058_2924505_+\|poly-beta-1,6-N-acetyl-D-glucosamine-biosynthesis-protein-PgaD	unknown	unknown	gnl\|CDD\|188455
NZ_CP009037.1\|WP_011051153.1\|2927422_2928196_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP009037.1\|WP_011051163.1\|2891362_2893870_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	unknown	unknown	gnl\|CDD\|181856
NZ_CP009037.1\|WP_045123414.1\|2890352_2891321_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP009037.1\|WP_015463095.1\|2918966_2920925_+\|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA	unknown	unknown	gnl\|CDD\|274868
NZ_CP009037.1\|WP_011051160.1\|2896002_2896914_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_003482014.1\|2925088_2926621_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143448
NZ_CP009037.1\|WP_011051166.1\|2888497_2889802_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP009037.1\|WP_015463099.1\|2889963_2890278_+\|EthD-family-reductase	unknown	unknown	gnl\|CDD\|131173

Protein	Function_ID	Function_description	E-value
NZ_CP009037.1\|WP_005922621.1\|2901797_2902205_-\|hypothetical-protein	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0.0036635
NZ_CP009037.1\|WP_011051154.1\|2922808_2924062_+\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	0
NZ_CP009037.1\|WP_011051155.1\|2920906_2922805_+\|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB	gnl\|CDD\|274867	TIGR03938, hypothetical_protein_Pcar_2791, poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB. Two well-characterized systems produce polysaccharide based on N-acetyl-D-glucosamine in straight chains with beta-1,6 linkages. These are encoded by the icaADBC operon in Staphylococcus species, where the system is designated polysaccharide intercellular adhesin (PIA), and the pgaABCD operon in Gram-negative bacteria such as E. coli. Both systems include a putative polysaccharide deacetylase. The PgaB protein, described here, contains an additional domain lacking from its Gram-positive counterpart IcaB (TIGR03933). Deacetylation by this protein appears necessary to allow export through the porin PgaA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP009037.1\|WP_015463098.1\|2895037_2895754_-\|S-layer-family-protein	gnl\|CDD\|225751	COG3210, FhaB, Large exoproteins involved in heme utilization or adhesion [Intracellular trafficking and secretion].	3.95844e-14
NZ_CP009037.1\|WP_015472245.1\|2894459_2894960_-\|tryptophan-rich-sensory-protein	gnl\|CDD\|320706	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family. This family contains tryptophan-rich translocator protein (TSPO), an integral membrane protein that is highly conserved from bacteria to mammals. In eukaryotes, it is mainly found in the outer mitochondrial membranes of steroid-synthesizing cells of the nervous system where it transports cholesterol into mitochondria. It is known to be highly expressed in metastatic cancer, steriodogenic tissues, as well as inflammatory and neurological diseases such as Alzheimer's and Parkinson's. TSPO is also known as the peripheral benzodiazepine receptor (MBR) and its ligands include benzodiazepine drugs, implicated in regulating apoptosis. In human, a single polymorphism A147T is associated with psychiatric disorders; the mutation causes structural changes in a region implicated in cholesterol binding. TSPO is homologous to bacterial tryptophan-rich sensory proteins, and their tryptophan residues are believed to be functionally important. In bacteria, TSPO acts as a negative regulator of expression of specific photosynthesis genes in response to oxygen/light; it catalyzes a photooxidative degradation of Proto porphyrine (PpIX). R. sphaeroides TSPO (RsTSPO) is involved in porphyrin transport, similar to human, while Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism.	2.25803e-43
NZ_CP009037.1\|WP_015472251.1\|2916533_2918234_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	6.32832e-135
NZ_CP009037.1\|WP_015463099.1\|2889963_2890278_+\|EthD-family-reductase	gnl\|CDD\|131173	TIGR02118, TIGR02118, conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate. [Hypothetical proteins, Conserved].	1.63833e-35
NZ_CP009037.1\|WP_011051152.1\|2928201_2929257_+\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_CP009037.1\|WP_011051151.1\|2929253_2930306_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|234593	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase.	0
NZ_CP009037.1\|WP_015472248.1\|2897312_2901605_-\|hemagglutinin	gnl\|CDD\|379124	pfam13332, Fil_haemagg_2, Haemagluttinin repeat.	4.94434e-34
NZ_CP009037.1\|WP_003490761.1\|2924058_2924505_+\|poly-beta-1,6-N-acetyl-D-glucosamine-biosynthesis-protein-PgaD	gnl\|CDD\|188455	TIGR03940, PGA_PgaD, poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD. Members of this protein family are PgaD, essential to the production of poly-beta-1,6-N-acetyl-D-glucosamine (PGA). This cytoplasmic membrane protein appears to be an auxiliary subunit to the PGA synthase, PgaC (TIGR03937). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	3.2987e-53
NZ_CP009037.1\|WP_011051163.1\|2891362_2893870_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I	gnl\|CDD\|181856	PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional.	0
NZ_CP009037.1\|WP_045123414.1\|2890352_2891321_-\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	1.57822e-94
NZ_CP009037.1\|WP_005916283.1\|2927141_2927426_+\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	7.34574e-11
NZ_CP009037.1\|WP_011051153.1\|2927422_2928196_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.72034e-18
NZ_CP009037.1\|WP_003482014.1\|2925088_2926621_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143448	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.	0
NZ_CP009037.1\|WP_011051166.1\|2888497_2889802_-\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP009037.1\|WP_015463095.1\|2918966_2920925_+\|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA	gnl\|CDD\|274868	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA. Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats.	2.80065e-100

>NZ_CP009037.1|WP_005922621.1|2901797_2902205_-|hypothetical-protein
MGQEEQVVTNIFGEDFISGSGVSRDVGPLGDRVYYSLVNDGIELIFSDNRLAQITLHIKPGDDFRSYDGNLPAGLSNEMYFDEVVGLLGSPDVSGGGNDDPLLGRIYPWIKYENMCPKIHIEMGFKGGIERISLS
>NZ_CP009037.1|WP_015472248.1|2897312_2901605_-|hemagglutinin
MDPEWTQTRLGDGFYEQRLVLDQITELTGRRYLGNYADGVAQYRALLESGVAAAGQLQLSMGVGLTAAQAAALTQDIVWMVEQECQGQTVLVPVVYLASNSLQLRGNGALIAGGDVELNATNTLSNQGVIAGADVSITAGNLLNQGRIGGTGSVALEARNDLLNQGQIQGRDVALVAGNNLVSEASKAINGVGILSGISASNTLQLMAGNDMTLTGTRVQAGGSAALIAGNNLSLTPSALRDDNGLLRGGDVVSVTTGKDLFVSAGNDLQLHGVTIAAGGSAALQAGNDLSLTPTTGLDGKVATRTSINTGDSLQLTAGNDLTIRQAEVKAGGDLIAAAGNNLNVESVVNDSQSNSDNSRNGKTRVTTTTTTQTIDQQALTAGGNLILSAGNDVNLVAAKLDAGKGLGISAGNDINASTLTTVDTSDTLETRKRFKQTTATRDETVHGTEFSAGGNLAMQAGNDITLTAASAASKEGGITLAAGNDVNLLAASEQHDAVQDMTKKKKGTFSSKTTTTHDEWHDNVAVTATLSGDTVQIAAGNDLLSQGAQVASTGDVVLAAGNNLTLDTVQNTHSEEHEKTVKKSGLYGGGGFSVALGVTKKTDGLDVTEVTNTGSLVGSTDGAVTMTAGNKVSITGSDVLSATSTTIVGKEVTIAAAENTVDTVQTSKQQSAGITLGLTGGAVDAAQAIYGAAKRGSEVEDDRLKALYAAKAGYAVSDTVGLVSNGLKGYDGQAVAGNTTKTGAAAADGAQGAANAAGVSLRLGIGASSSSSKTTTHEETTGGSRILSNGDITIAATGGDLNIIGSKIAGENVALAAANNLNLLSNKETNTTKSENKNAGGEIGISVGAVTGYYLSVSAGKGSAKGNSDLRTESVVTANDTLTLVSGNDTTIQGAQAIGNKVLANVGGDLLIKSEQDTNEYKSKQQQASLTLATGTGSGGSYSQQKVNSSYTSVTEQSGIQAGNGGFDITVGGNTALVGGAIASAADASLNRLSTGSLTVEDLQNKAEYKTSGVSVAGGTGSSMASMAIGTGLSMLGNSSDSSSSTTKSDIAAGTIQIRNGDESALAGLDRSATELQQSGLKEIFDQKKIEDQKELMGLAGEIGFRVAGDVASAMYQKAQLDLASAPDEASKAQALARLDAWSDGGTNKILLHGLTGAAIAALGGENVLQTAAGAAGAEAAKVAMSDYLVKNGVTDPATYNALMELGSAALGGIAGGQVGATTALAGDQFNRQLHPDEVTWIRQNAEAFALQEGISVIEAKQRLTVEAAAQVDAVIAKKVGIENIDTEALAFLNSNKNQYKWGQAFKATDDEYANFHQYGNILANNPDQFREVYNALGASGIAKDSLQQVYQSELLAWSTATRGSDGVAMLETFTGDVGMAAGIIRNIAQGDTQAAGTSIALAAMPTIVGKQLVPCCAHWRRRLMRRSG
>NZ_CP009037.1|WP_015472247.1|2896914_2897286_-|hypothetical-protein
MNAKNELTWINPLTGVKEAVPATAKIHVDHVLPQNAIRQIEGFDSLPKGVQNEIMKDPANLQPMIKSANCSKGCKVEAEGAGWMTWNGKPVSEKYKMYLEEAQQDFRTKVSKIIDDNNALKGK
>NZ_CP009037.1|WP_011051160.1|2896002_2896914_-|hypothetical-protein
MKNLSGRSDRPWELMGVFKDEFILEFNGGIYSDVNGICDKYNFLHERDGAGYRNVGYSGLLLNGKSWIIEPLRLLQPNSYQAFQEAAEPLLLGVMLIEDLRNPGGPPMVRPILFLEVHGRMVEVFATFPGSTYEDGNDCFGSLLSLPDGLAKSWLWRTDGWRIPGSVGEGPMTNRQLIGHPSSRWRDADTYLDSLGKGWKKKYLPKIKELFPDAVTNINGVKRIKFRCFLDTRPVGVGGPEGDQFFVCSTRQDQVVYHVHEGDVENLRVLCNPEDAIDRYCAHVLRRKPGQFDFSDWSEPFRP
>NZ_CP009037.1|WP_015463098.1|2895037_2895754_-|S-layer-family-protein
MGRAATSLGGINAWRSNGPGRRYLIETDPRFVNYDNFISSDFLLDKLGVDPEWTQTRLGDGFYEQRLVLDQITELTGRRYLGNYADGVAQYRALLESGVAAAGQLQLSMGVGLTAAQAAALTQDIVWMVEQEYQGQTVLVPVVYLASNSLQLRGNGALIAGGNVELNATNSMSNQGVIAGADVSITAGNLLNQGQIQGRDVALVARRTPILSSTSVLESNSPGDLDMTLPIRTALVEL
>NZ_CP009037.1|WP_015472245.1|2894459_2894960_-|tryptophan-rich-sensory-protein
MTQHRLNTSQWFGLLGWLVLCYAVAALGAMASIQAASFYAQLQRPAWAPPGWLFGSVWTVLYGMMAVSVWSVWRRGGWAGARVALTLFLVQLALNGLWSWLFFAWHLGAWAFTDIVALWLVLAATIGVFAKRQALAAWLLVPYLAWVSFAAALNFSVWQLNPQMLG
>NZ_CP009037.1|WP_011051163.1|2891362_2893870_-|bifunctional-aspartate-kinase/homoserine-dehydrogenase-I
MSSHAVSFEPAAVLASSARTVVHKFGGTSVADAERYRHVAQLLLARDETVQVTVVSAMKGVTDALIELAELAAKNRPEWRERWHETRARHRGAAVALLGEHSGPTVEWLDERFAHLSQILGALAVIGELPREVLDRVQGLGEVYSAQLLGDHFRAIGEDCAVLDARDVLVVNRGELGVDVDWEASAQRLATWRQAHPQTRVVVTGFVARDRADRVTTLGRNGSDYSGAIFAALFDADELHIWTDVDGVLSADPRVVPEAVQLETLSYDEACELAYFGAKVVHPQTMSPAIERGLPIIIRNTFQPEHPGTRITASSAVSGPIKGLTLSPDLAVLNLEGTGLIGVPGTAERVFAALRTAQVSVVMISQGSSEHSICCVVKQHESERARNALLQAFAHELTVGQVQRVQLTTGISVLAAVGDGMAGQPGVAARLFESLGRAQVNILAIAQGSSERNISVAIDAAHATKALRAAHAGFWLSPQTFSVGVIGPGNVGAALLDQLRNAQPQLLGKANLDLRLRAVVSRGRMLLDERGLVGDWRDAFASSATPTDLERFTTHLLSAHLPHTVIIDCSGSAEVADRYAGWLAAGIHVVTPNKQAGSGPLARYEAIRAAADASGARFRYEATVGAGLPVITTLRDLVDTGDAVTSIEGIFSGTLAWLFNKYEGSVPFAELVTQARGMGYTEPDPRDDLSGVDVARKLVILAREAGRSISLEDVQVESLVPEALRQASVDDFMARLPEVDASFAQRLAQAHARGNVLRYVAQLPPDRAPSVGLVELPADHAFANLRLTDNVVQFTTRRYCENPLVVQGPGAGPEVTAAGVFADLLRVAAGEGARL
>NZ_CP009037.1|WP_045123414.1|2890352_2891321_-|homoserine-kinase
MAQGQGSDHASLGKHGLHEARAFAPASVANVAVGFDLLGYPIDGVGDTVTVRRIDAPVVRIAAIRGTTVALPLDAERNTAGAALISLRAALQLPYGFEIEIDKGIALSSGMGGSAASCVAALVAANALLASPLDHHQLYQYALDGEAVASGSRHGDNLGPLFVGGLVLCTLERLVPIAVPPAWHSLLVHPDAVLETRRAREALAGNYQLREFVAQSTNLALVLAGCHGGDADLVRAGLRDVLIEPRRAPLIAGFAEAKQAALDHNAFGASISGAGPSVFAWFESRAAAEAAAPAVQAGFAAVGFDSQAWVSPIASPAARLLE
>NZ_CP009037.1|WP_015463099.1|2889963_2890278_+|EthD-family-reductase
MIKVSVMYPYRDGARFDHAYYRDRHMPLVSARMGAACLKYTVDKGISGGDAGSPPAFIGMCHIFCESVETFNASFGPHAQEILADIANYTDLTPVMQISEVVVD
>NZ_CP009037.1|WP_011051166.1|2888497_2889802_-|threonine-synthase
MFISTRGGAPAASLSQAIAAGLAPDGGLYVPQTLPPARTLVAGAGLADTATALLQPFFEGDALAAELPAICAEAFDFPAPLVALGTPGDYALELFHGPTAAFKDFGARFLAACLTRLRRAEDRPLTILVATSGDTGAAVAAAFHRQPGLRVVVLYPDGRVSPRQAHQLGCFGDNIQALRVAGSFDDCQAMVKQALNDAALQTQVPLSSANSISLGRLLPQMSYYAHAALQHHAASGSVLNLVIPTGNLGNALAAIIARALGVPLGRIALASNANHVLPDYFAGDAYAPQPSVSTLANAMDVGAPSNFERLRWLYNGDDAALREEFRALSVDDAAIRNTVQQRFARYGEVHCPHTATAVHVLEQLRAEGAEGGTGDWAVAATAHPAKFEGVVEPLIGRSVEVPPALAALLQRPAHAEALAPDYAALRQRLLADAT
>NZ_CP009037.1|WP_015472251.1|2916533_2918234_-|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MWMRSAPLALAVCLWAIAGLAAAQQSAPTTLDRQEQLRQAEEIQRRQEQERQAPFAGPREEADLVDARSTVLPKEDLCFSITRVRLSGAGDDAARFAWLWTSLRRYQGRCIGHAGIDIIRRRALDQLVARGLVTTRIGVPEQDLSRGELRFELMPGRLRAVRVVSDTEGAHWKTALPLRTGDLLDLRAIEQAVEQFKRLPSQDAKIDIAPGEAPGESDLVITLQHGRRWRGVANADDSGVEATGRVQGGLDVSLDNPLGLNDLLSIGYSHDLATRDEERGTRGNSLSYSLPWGWWTFALSASSYRYHQRVDGFLQTFRSSGESGNAQLDIQRVLHRDGTSKTSAGVVIGRRRARSYLDGVEIGIQRRDTSSAEFYLTHRRYLGTMQLDMRLAHRRGTPWFNSQWTGYAPQIGFPTFRYGVTTLDISTALPFKLGPVPMAWESSLRAQTAGELLLGSEFVTIGGRYSVRGFDGEATLGAEKGAYWRNTFSFPVQQIGLTPYLGLDAGRIDGTSANGLRGRSLVGGAVGLRGGWFGASVDAFAGWAIHRPDGFGSAQPAYGARVIYQF
>NZ_CP009037.1|WP_015463095.1|2918966_2920925_+|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA
MQQAEQFRGRQRYADALAIYERVLHADPRDRGAYTMRALTLSDLGSAQLAAEAMWRHPNWFSQQERERLDNDRVARMIGWASAEPVDATHRYAETDQALANAARIQRDAPPQAAWEATRLRVDSLVALNQRQRHRDVIANYQALRAEGVDVPAYVLPTVGDSLMGLRRPAEAESVLRQALQHSPNDFNTQLLLGYALLEQERFDEAMPLFESLAATQAPWPRREGATSGYENWDRFSADIALATARSAANDNRGAEALLRERAAIGPDNAELQAALASIEARRGQTMQALQRNRMALTLDPHQKQARSGVVEAQRDLDRLDLADAAFASLQQEYPDDAGLQRLGASLERQRGWQVHLSHAWGRSENDTLTNSTSPLGNHFGSSLLEAESPLLGERWRVGLRARDDWADFQATRVRYRSFWLGAHYRYDRLDFSAYGGRALDDFDRDGTAWALDAGWRFSDAWYGSVAWRTRDPEASLQARRLGITGDSIGAAVRWTPSDESRWELQARQLRYSDGNRRDQLDLFGSQRLWANPHVLVDGLFAASAGRAEDDRAVDYFNPRHSSAVAAGVRIEQIGWRRYDDAFRQRLEVTAGPTYQSGFGSRWVPALAYRHLWSLGDGSALSYGVSWSRPVYDGQREQQLGLDLDFRWGGTP
>NZ_CP009037.1|WP_011051155.1|2920906_2922805_+|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB
MGRYAVIRLPLLLVALLLMTFASSAQAGLLVLSYHDIRDDVAAKGDPDRYAVSTSNFAAHLDWLRSHAYHPVSVQQVLDARAGKRDLPSRPVLLTFDDGLRSVYTRVFPLLQAYGYPALVAPVTSWVELPAGQVVPYGPRDFTRDDFVTWAQLREMQDSGLVEIGSHSDDLHKGIPGNPFGNETPAAVTRRWDVGNGYESEAHYRQRIETDLRHSRDAMVAHLGKPPRAMVWPYAAYNRASNEIAARLGMTLSFDLEGRSHEADIGQQGRDRVDGQSLASLGRLLLFNNPDVRDLAGELRRDLSRDGVRAIQVDLDYVYDPDPAQLERNLDVLVQRVKDIGPSHVFLQAFADPDGDGAADALYFPNRHLPMRADLFGRVAWQLRTRAGVRVFAWLPVLGFHLPDAQQQAALQIHGNDPKDVPRLDPGNPRTRQLVADIYEDLAANTYFEGLLFHDDAYLRDDEIPAYGNGDPAKRTQQLIGFTQELKAAAERWRPKLVTVRNLFAQPVLEPHSEAWFAQRLEAFASAYDYTALMAMPYMEQANDANAWLTQLATRVGQQPRGFDKTIFELQTFDWRSGKPLPDGVLLAHSKLLLAAGVRHLAYYPDDFIGGHPFLPEAREAISARQFPYLER
>NZ_CP009037.1|WP_011051154.1|2922808_2924062_+|poly-beta-1,6-N-acetyl-D-glucosamine-synthase
MTTSLLLAALFNFAFYYPIIMAFFWMIGGIYYYLRRERGTHRPSKPPPMASEPFVSILMPCYNEAKHVAETIAAMSAQQYADFEIIAINDGSTDRTAEVLDDLTHHHPRLRVVHLEQNHGKANALRVGTLAARSDYLVCVDADAILDPNATRWMVGHLIAGPRVGGVTGNPRVRNRTTLMGRMQVGEFSAIVGLIKRAQRVYGRLFTVSGVICAFRRSALHHVGFWSDNMVTEDIDISWRLQLDGWDIRYEPNALCWILMPETFRGLWMQRLRWARGGVEVLLSHGRRALAWRSRRMWAVLLEYALSLAWAYTMLLIIVLWLLGKFIALPPALYVDTILPRWHGLVLAVVCLLQFATSLMIERRYEKGLARQFFWVIWYPAAFWMIGMLTAVIAFPRALLARRNKRARWKSPDRGIQ
>NZ_CP009037.1|WP_003490761.1|2924058_2924505_+|poly-beta-1,6-N-acetyl-D-glucosamine-biosynthesis-protein-PgaD
MTPPIINLPQRLGRSRRLAYGAATAGAWMVYFYLWAPLATLIAWFFGLRSAYTELYLQHNALDPFALGSLPVIALMSAITTVGWAEYNRLRFVNADKRRRPRTVAEPDVDQRLGATEQLGTLLRHSRISSVAMDKFARPVAVRVVRHR
>NZ_CP009037.1|WP_003482014.1|2925088_2926621_+|aldehyde-dehydrogenase-family-protein
MSADLLKALDLAASNSGTYLGEATWSQATGAGVLQPLNPTTNAVIAEVQATTPEDYELIVQRAQAAFKVWRTTPAPRRGEAVRLCGEALRAHKDALGSLVALEMGKSKPEGDGEVQEMIDIADFAVGQSRMLYGYTMHSERPGHRMYEQYQPLGLVGIISAFNFPVAVWAWNAFLAAICGDICIWKPSNKTPLTAIATMKICNAALKDAGFPDIFFLINDAGTALSEKLVEDTRVPLISFTGSTQIGRVVAEKVARRLGRCLLELGGNNAIILDETADLKLAIPGIVFGAVGTAGQRCTTTRRLIVHASIYDTVLATLVKAYKQLDSKIGDPTDPANLMGPLNSQGAVAQFLDSIAKAKAAGGTVEVGGTAIDRPGNFVLPAIVTGLQNSDAVVQHETFAPILYVMKYSTLDEAIELQNGVPQGLSSSIFTQNLKAAEKFLSAAGSDCGIANVNIGTSGAEIGGAFGGEKETGGGRESGSDAWKVYMRRQTNTINYSDSLPLAQGIKFDL
>NZ_CP009037.1|WP_005916283.1|2927141_2927426_+|DUF4190-domain-containing-protein
MNVVVRQTSAMAIVSLVAGILGWTLIPFLGSICAIITGHLARAEIRRNPHGLDGDGLAIGGLIMGWLAVALWVVGIAFFLLFFGGMAWLAAANS
>NZ_CP009037.1|WP_011051153.1|2927422_2928196_+|class-I-SAM-dependent-methyltransferase
MSMATPSSAQRFNDRVAAYVRYRPSYPPQLLRWLHGELGVTPATAVADIGAGTGISSRLFLEAGYAVTAVEPNQAMREAALQWLAEFPKFQAIDGTAEATGLADASVGLVSAAQAFHWFDMQAVRDEWARILQPGGLAVVYWNSRELDSTAFLRGYEQLLLDYGTDYSAVAERYQDDATMQAWFGEGFRAMARFPNVQRLDFESLRGRLLSSSYAPLAHDPRHAPMLAALRTLFDAYAHDGLIDFQYQTRVFAGRLN
>NZ_CP009037.1|WP_011051152.1|2928201_2929257_+|quinone-dependent-dihydroorotate-dehydrogenase
MYSLARPFLFSLDAERAHALALRSIDTAYRTGTTALLARRPVPLPTPAFGLMFPNPVGLGAGLDKNGEHIDALFALGFGFVEIGTVTPRAQEGNPKPRMFRLPEYQAVINRMGFNNLGVDALVANVQRARRTGGLLGINIGKNKDTSNEEATSDYRYCMERVYPLADYITVNISSPNTAGLRELQEEQSLRRLISDLRETQEALSAQHGKRVPMLVKVAPDLNDRDIDAAARVLADLAVDGVIATNTTVTRTLVANHPLAAEAGGLSGAPLLGQSTLVLRRLRARLPESIPLIGVGGINSGADAVAKMAAGASLVQCYSGLVYRGPQLIGECVNAIRRRREAPSGGAVSPL
>NZ_CP009037.1|WP_011051151.1|2929253_2930306_+|UDP-N-acetylmuramate-dehydrogenase
MSDAVQTGWQLSEQAPLRTLNTFHVEATARWLLNVQAPEALPQALAAPEIAGQPLLVLGSGSNVLLAGDPPGCVLCFDNRETSIIAHRADHAIVRAGAGVNWHALVLYALQQGLSGLENLALIPGTVGACPIQNIGAYGAQVGDFIHVVEAFDRHSQQFVRLDAADCAFGYRDSVFKQQPERYLIVAVEFNLPLLHELRLDYAGIREELASMGAELAGAADVAQAVINIRRRKLPDPDVLGNAGSFFKNPLLPSEQIAALQASFADMPVYPGEHAGQGKLSAAWLIEQCGWKGKREGDAGVSPDHALVLVNYGTATGAQLLDFARRIAESVRERYSVILEPEPRIIGAHW

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Crispr_ID: NZ_CP009037_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009037_7

5154987-5155220

TypeI

I-C

Consensus_repeat	Method
GGAGGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	PILER-CR
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CRISPRCasFinder
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CRT

3 spacers

cas1,cas4,cas7,cas8c,cas3

The CRISPR arrays of NZ_CP009037_7

>merge|NZ_CP009037|7|5154987-5155220|PILER-CR,CRISPRCasFinder,CRT
GGGGGTCGCGCCCTCACGGGCGCGTGGATTGAAACAAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGAGGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAGGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTCGGGTTTCGGGATGTGCTTCAGATCTGCGTCGGTCGCGCCCTCACGGGCGCGTGGATTGAAAC

>NZ_CP009037|7|2|5154987-5155220|PILER-CR
GGGGGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	AAATGCTTTCGACGCGCATAAAGCGCTGGCGCA
GGAGGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGTTCAAGCTCCGCCGCCTGATCCGCTTGC
CGAGGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTCGGGTTTCGGGATGTGCTTCAGATCTGC
GTCGGTCGCGCCCTCACGGGCGCGTGGATTGAAAC

>NZ_CP009037|7|7|5154990-5155220|CRISPRCasFinder
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGA
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGA
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTC
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC

>NZ_CP009037|7|1|5154990-5155220|CRT
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGA
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGA
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTC
GGTCGCGCCCTCACGGGCGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009037.1\|WP_015463674.1\|5160654_5161962_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349917
NZ_CP009037.1\|WP_015471496.1\|5156316_5157099_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NZ_CP009037.1\|WP_011052564.1\|5170310_5171678_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319958
NZ_CP009037.1\|WP_003484548.1\|5162220_5163465_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183194
NZ_CP009037.1\|WP_011052553.1\|5142727_5144959_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|377178
NZ_CP009037.1\|WP_015463671.1\|5145160_5146861_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227059
NZ_CP009037.1\|WP_005927109.1\|5147024_5149319_+\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP009037.1\|WP_003484508.1\|5139610_5141350_-\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	unknown	unknown	gnl\|CDD\|368840
NZ_CP009037.1\|WP_003484546.1\|5159680_5160496_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NZ_CP009037.1\|WP_005927086.1\|5159284_5159578_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|236880
NZ_CP009037.1\|WP_015472885.1\|5153458_5154493_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP009037.1\|WP_015472886.1\|5166987_5170128_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP009037.1\|WP_005927098.1\|5152823_5153456_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP009037.1\|WP_005927101.1\|5151937_5152804_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP009037.1\|WP_015463676.1\|5163558_5166807_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|182501
NZ_CP009037.1\|WP_015472884.1\|5150072_5151941_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP009037.1\|WP_015471495.1\|5155306_5156317_+\|IS21-like-element-ISXci1-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP009037.1\|WP_011052559.1\|5158622_5159180_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236776
NZ_CP009037.1\|WP_003484541.1\|5141346_5142294_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP009037.1\|WP_015463669.1\|5142395_5142656_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009037.1\|WP_015463674.1\|5160654_5161962_-\|amidohydrolase	gnl\|CDD\|349917	cd05667, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins that have been predicted as N-acyl-L-amino acid amidohydrolase (amaA), thermostable carboxypeptidase (cpsA-1, cpsA-2 in Sulfolobus solfataricus) and abgB (aminobenzoyl-glutamate utilization protein B), and generally are involved in the urea cycle and metabolism of amino groups. Aminoacylases 1 (ACY1s) comprise a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and is a highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP009037.1\|WP_015471496.1\|5156316_5157099_+\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	1.26724e-150
NZ_CP009037.1\|WP_011052564.1\|5170310_5171678_-\|VOC-family-protein	gnl\|CDD\|319958	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	0
NZ_CP009037.1\|WP_003484548.1\|5162220_5163465_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	6.8373e-96
NZ_CP009037.1\|WP_003484546.1\|5159680_5160496_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	1.23043e-172
NZ_CP009037.1\|WP_015463671.1\|5145160_5146861_+\|hypothetical-protein	gnl\|CDD\|227059	COG4715, COG4715, Uncharacterized conserved protein [Function unknown].	4.52622e-11
NZ_CP009037.1\|WP_005927109.1\|5147024_5149319_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.95062e-57
NZ_CP009037.1\|WP_003484508.1\|5139610_5141350_-\|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase	gnl\|CDD\|368840	pfam06315, AceK, Isocitrate dehydrogenase kinase/phosphatase (AceK). This family consists of several bacterial isocitrate dehydrogenase kinase/phosphatase (AceK) proteins (EC:2.7.1.116).	0
NZ_CP009037.1\|WP_005927086.1\|5159284_5159578_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|236880	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional.	4.66511e-26
NZ_CP009037.1\|WP_015472885.1\|5153458_5154493_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP009037.1\|WP_015472886.1\|5166987_5170128_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP009037.1\|WP_005927098.1\|5152823_5153456_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.37841e-44
NZ_CP009037.1\|WP_005927101.1\|5151937_5152804_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.97013e-155
NZ_CP009037.1\|WP_015463676.1\|5163558_5166807_+\|MMPL-family-transporter	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NZ_CP009037.1\|WP_015472884.1\|5150072_5151941_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP009037.1\|WP_015471495.1\|5155306_5156317_+\|IS21-like-element-ISXci1-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.82356e-40
NZ_CP009037.1\|WP_011052559.1\|5158622_5159180_-\|hypothetical-protein	gnl\|CDD\|236776	PRK10856, PRK10856, cytoskeleton protein RodZ.	0.00507177
NZ_CP009037.1\|WP_003484541.1\|5141346_5142294_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.08602e-67
NZ_CP009037.1\|WP_011052553.1\|5142727_5144959_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|377178	pfam03971, IDH, Monomeric isocitrate dehydrogenase. NADP(+)-dependent isocitrate dehydrogenase (ICD) is an important enzyme of the intermediary metabolism, as it controls the carbon flux within the citric acid cycle and supplies the cell with 2-oxoglutarate EC:1.1.1.42 and NADPH for biosynthetic purposes.	0

>NZ_CP009037.1|WP_015472885.1|5153458_5154493_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRRQLNTLYVTTDGAWLHKDGANVVLNVERQERTRLPVHMLESIVCIGRVGVSPQLLGFCAEQGISICYLTAQGRFLARVEGPVSGNVLLRREQYRCSDDPVRCAAIVGHMLAGKIHNQRAVLARGWRDHGDRMIDIPAFQHALKRLKRIPQRLLIETSVDVLRGLEGEAAQSYFGVFGQLVRTESPLLRFGGRNRRPPRDAFNALLSFLYTLLTHDCRSALETVGLDPAVGFLHRDRPGRPSLALDLAEEFRPLLGERLALSLINRRQLNQRDFQVFDNGAVLLKDDARKTVLIAYQERKREQLQHALLGEKIDIGLLPFVQAQLMARHLRGDLDGYPSFFWK
>NZ_CP009037.1|WP_005927098.1|5152823_5153456_+|CRISPR-associated-protein-Cas4
MDDDDLIPLSALQHYLYCPRQCALIHVERQWAENRHTAEGRLLHERADVAHTQRRRGVRTVTAMPLLALELGITGKADVVEFHHDPAGEFAFPVEYKRGRPKSHRADEVQLCAQALCLESMLKRPVDAGALFYGQTRRRKDVVFDPALRELTQRTIAETRALLSHGLTPGARYDSKRCDACSLIDLCQPRLLGRGSVDTWLRRQLDAEEE
>NZ_CP009037.1|WP_005927101.1|5151937_5152804_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSAIAHRYEFVYLFDVANGNPNGDPDAGNLPRLDPETNRGLVTDVALKRKIRNYVALEKDNAPGYTIYMQEKSVLNNQHKQAYTALGIEHEAKKLPKEGDKARQLTAWMCENFFDVRTFGAVMTTEVNTGQVRGPVQLAFATSVEPVLPLEVSITRVAVTNEKDLEKERTMGRKHILPYGLYRAHGFVSAKLAERTGFSEEDLQLLWRALTNLFEHDRSAARGEMAARKLIVFEHEHPMGNAPAHVLFDKVKVERIDQADQGPARSFSDYRVVIDHALPAGVSVTELF
>NZ_CP009037.1|WP_015472884.1|5150072_5151941_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILSALADYYHRLLDDPTSGIAAPGYSQEKIGYTIVLDGGGRVVAVEDEHDYDSKKRVAKALSVPQPEKRTVAVKSNFLWDKTSYALGVSASSKRSAQEHAAFKTLHQQALGGSEDPGLRALLTFLDTWSPAQFADHPQFSRHGEALLDTNLVFRLEGDTGYLHQRATARAAWERLQGQSADGASGMCLVSGLRAPLARLHPPIKGFESTGSSIVSFNADAYISYRGSLLKVQSKHKENDSGANAPISKSAAFAYTTALNHLLRRDPRNRQRVQIGDTTVVFWAQARTTAHAEEAEDLIADFLRGGETEGPGIADGQATQRLHLALEQVRQARPLREMDDALDDDARIFVLGLAPNASRLSIRFWETQTLAGFAARLAAHYQDLKLEPPAWKRAPTPQFLALQTAPVYGEHGKPKAEDVSPLLAGELTRAILAGTRYPRSLLGGIVMRFRADGQVNPLRVALCRAVLAREARLDTQQGLSSTKGEPPVSLDTANTDPGYLLGRLFSSLENLQRTALGGQVNATIRDRYYGAASATPASIFPVLLRNAQNHFGKLRKDKAGLAVNLEKEVGQIIDALPASFPRSLPIHEQGRFAIGYYHQTQARFARNNGQDAPDTASEGEPT
>NZ_CP009037.1|WP_005927109.1|5147024_5149319_+|CRISPR-associated-endonuclease-Cas3''
MDFFAHSTKRQDRSDWQRLADHLLAVGERAARNAAPFGGQLLASLAGQLHDLGKYTQKFQGRLDGDPARVDHATWGARIACERYGTAGTLLAYGIAGHHAGLADGRPGHAAQSRPSLHERLSEDYRERELPPLLSDWERELSLPAKLALPDGFIGHPRQERRPFQLTVLTRMIFSCLVDSDFTETDDFYRRLEGRQSRAEDTGTRPALPELRQCLDAHLSTLPTEGGINPLRAQILSEVRAKAGMRPGLFSLTVPTGGGKTLASLAFALDHAIAHGLRRVIYVIPFTSIVEQTVQVFRHALGVQERDDIVLEHHSAFFDDPTKAPQSIDKRKLAMENWDAPIVVTTAVQFFESLFADRPSRCRKLHNIAGSVVVLDEAQTLPHALLRPCVALLDELARNYRVSPVLCTATQPTLRLDQGFVGGLDQVRELVDDPPALYARLRRVQVRHVGTLDDAALTDHLRQREQVLCIVNNRRHARHLFDAIADRPGARHLTTLMHARHRSAVLAELREDLKAGRPCRLVATSLIEAGVDVDFPTVLRAEAGLDSIAQAAGRCNREGLRPVEVSQVQVFAPANPDWAPPKELDLFAEVFRGIERTHRNDLLAMAAVADYFAALYRRLGDGRLDREDVLGLLRDADIKGLPLDTLARKFKMIQTTLRPLIVPYAPYAEGCDKEVPEVADILRQLEHAEHVGVAGAARRLQPWLVQVPEQAYRALWQANAIAPVAQARYGEQFVRLVNPRLYDPRFGLRWDDSPQFLAAEALVQ
>NZ_CP009037.1|WP_015463671.1|5145160_5146861_+|hypothetical-protein
MTARFSPADLDRSFLLGITTPSYYARGLVYADQDRVTLQTVEALRVDALVSGSDDYAVELVWRNGRLLGRCDCPVGQQAEFCKHQVAVALSWARTSADPSSQKRTKRTTAGMPVAESSDRVLQHWLSTLTTQALQALILELADNDVQLRKRLLSQAQLAVAPLQQWRKAISTLLGRKRFMDWSATIAYSRQLGVLPSLLEQARQRDPLAALDLHEYAFKRLLAIYEEVDDSRGDLGERLRVLGHAHLEAARAAGTDTLGDRLFELRMLDQWSLLRPLQDYAALLSATDIARLQHAALEILHARGNRARRLSAESLLEDTARCGGSVDAMLEFFAHTCSSGWDHLEMARRCGEHGRQRQALEWLERGVKADPQDGRLLAALATAYVHDGFPEDALTLRWKAYLLMPNEETYLALQEAASLLDAWEAWRERALQALDTKAVPRFIDAHDTRISLLLAEEQIQRALELAADQTRKLPLGTWEQLLPAAETCDPAAALRICHTVIGMHIERTVRQGYVAAIRLLPTLQRLYQQQGGQGHAAFDAELARLRQQYRVKRTFIELLHKRFPAP
>NZ_CP009037.1|WP_011052553.1|5142727_5144959_-|NADP-dependent-isocitrate-dehydrogenase
MSKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSDTQKIADDLAELGELATTPEANIIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAEKDIKARYDRVKGSAVNPVLREGNSDRRAPLSVKNYARKHPHRMGKWSSDSKSHVSHMESGDFFGSEQSATIADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQIADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGDLYARIGTLPEEQQAQITADIQAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGQMWNAQGKLQDTKAVIPDRCYADVYQAVIDDCKAHGAFDPSTMGSVPNVGLMAQKAEEYGSHDKTFQMSGAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARLSETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCLRWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQFLDNNKSPARKVGELDNRGSHFYLAMYWAQALAAQTEDMALQAKFAPLAKALTGNEATIVAELNGAQGKPVEIGGYYHPDLAKVSESMRPSKTFNDILATLKA
>NZ_CP009037.1|WP_015463669.1|5142395_5142656_+|hypothetical-protein
MRIFSELLFQHGHIADVALAQRLAEPDTAAEAMQRHTARESLGSPVSPQPNVQTMTDPPSQTRRERRIARLSRRLLRGVTALSPFR
>NZ_CP009037.1|WP_003484541.1|5141346_5142294_-|LysR-family-transcriptional-regulator
MSRPPLHALQGFVSAVRLGNLSRAAGAMHLTVSALSHQMRALEQRLGYPLLQRHARGVTATPQGQQLLDRIAPHLDAIAEAFEPFGARREDTLTLSLTPSMASAWLVPRLGEFLASHPTIEINLLSSERLVDFERQQQVDAAMRIGAGQWPGVIAEPLFDEWLVPMASPALIARMGGVEAPPLHQWPLLGDPDDAWSRWFAAFGGDVPRRYVAVLDESEAHHRAALDGVGVALGRVTRARLLLASGQLVALSTQRLKTSWSHYLVYPPRSSTHGGFLAFRTWLQGQAREHAAHAQQATATPLAARRRKRSGTPSP
>NZ_CP009037.1|WP_003484508.1|5139610_5141350_-|bifunctional-isocitrate-dehydrogenase-kinase/phosphatase
MNHPSLPPQSERRALAIAQAVYEAFEDYHARFSEITACAKQRFETRDWSGAREDAVARIALYDQYIAECMLRLRAVLLGQAHDRALWMRARDRYAALLSGLIDQELYKTFYNTLTRRYFGTHGVDADIEFIALDIEPTDAITVPVARHTYAVSPGRLTDMLVRVLGDYAFAVPYAHRTRCAAAIAVRLLDDLAHWGEHPVRSVELLETVFYRERRAYLVGRVFGEHRFSPCVIALINDDAGLRAEAVLTRRSDVAQLFSNSRSYFQADLSTVGDAVVFLRSLLTHKPVDELYTMLGRAKQGKTERYRTFFSHFQAHPSEQLVHADGTPGMVMVVFTLPSYPLVFKLIRDRFAYPKTMSRAQVEGKYELVFQLDRIGRLLDAQPYRFLRFPKARFSPALLQELQTSCAMSLSEDGDDVLIALCYVQRRLRPLNLYLREQLPEAAHAAALDYGQAIKDMARNNIFPGDMLLKNFGITRHQRAVFYDYDELCLITECNFRDWPTPATYEEQMAAEPWFHVGPRDVFPERFALFMGLPSSQLEAVKHQHPELFDPRWWRDLQSRLRDDDYPDTPPYAESRRLA
>NZ_CP009037.1|WP_015471495.1|5155306_5156317_+|IS21-like-element-ISXci1-family-transposase
MLTQEQAVEIRVMARRGESVRAIAKQLECSRNTVRRYLRDQDARRYGPRESRACKLDGYQSYLRERVVQAHPRWIPATVLLREIQGRGYTGGISQLKAFLAPLKQSEPEPLVRFETPPGQQMQVDFTYVRRGRDPLLALVATLGYSRASYVKFVACAGEDMTTLCTGLREAFDYFGGVPEHVLFDNTKAVVIERDAYGEGQHRWNSALRELADTCGFKPRLCRPYRAKTKGKVERFNAYLKGSFVVPLAATLEASGLRLDAHLANVHVRRWLDEVANARVHATTKAVPAVRLAEERAVMLAAPALKAPPPIHQRVVLPLQSLQHPLCVYDALLEVV
>NZ_CP009037.1|WP_015471496.1|5156316_5157099_+|AAA-family-ATPase
MGLQHARIAELCEQLKLVRLGNDWPALAQDAARDDASFADFLERVLTSEQAAREERKRTVLMRLATMPAIKTVEQFDWAQAGGAPKAQIVELGHLAFVERAENVVMLGPSGVGKTHIALALCQRAVMAGHKARFITAADLMMQLAAAKAQNRLKDYFNRAVLGPKLLVVDEIGYLPFGRDEANLFFNVVAKRYERGSMVLTSNLPFTQWHSAFADDQTLTAAMLDRLLHHAHIVQIGGESYRLKDKRKAGQTAARVTATA
>NZ_CP009037.1|WP_011052559.1|5158622_5159180_-|hypothetical-protein
MRTTSVSSSLALALAGVLAVSGCSKKADDDSVSKDPTSGAATEAMPGPAATPPASDQAAQGSATGAASTDGGAATGSAVTVSSVAVGTQAAADKTVTPATSVGSKDTIIVSVKTDGSASNVAVSAKLTYQDGQVAGEQNATLNTTGAETTNLSFSKPDGWPAGTYTAQVMVDGKPAGTPQTIIVK
>NZ_CP009037.1|WP_005927086.1|5159284_5159578_-|LysM-peptidoglycan-binding-domain-containing-protein
MSVDKKADFSNVTSSVDSTAEVTPAPDFSNVRTSVQSTAQLVEESVTVQAGDSLSSIAKRHLGDGNLWPRIFEANRETLQDPDKIFPGQVLRLPPKS
>NZ_CP009037.1|WP_003484546.1|5159680_5160496_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MNTPEDSTLGREVAYPSGYDPSLLFPIPRAAGRQAIGLTGDLPFIGRDRWHAYELSWLDAQGKPCVATATLHVPCDSPSLIESKSLKLYLNSLNATRFNSAEAVRTRIATDLSTRAGADVAVEFGLPPIDAVGEGESIDALDLSIDDYGPPNAAYLCAHAQPVVEEVLTSALLKSNCPVTGQPDWASVTLRYRGAPIDREGLLRYLVSFRDHAEFHEQCVERIFNDVLTQCAPQWLVVEARYTRRGGLDINPLRSSASVPTPLSIFRDLRQ
>NZ_CP009037.1|WP_015463674.1|5160654_5161962_-|amidohydrolase
MRPSRLLTSALLLALPMLATAQTAQRPDVQAAAAPLQAKVVQWRRDFHQHPELSNREERTAATVAAQLRKLGLKPRTGIAHHGVVAIIKGAKPGPKIALRADMDALPVTEQTGLPFASKATAEYRGEQVGVMHACGHDAHTAILLGVAEALVGMREQLPGEVMLIFQPSEEGAPGNEEGGASLMLKEGLFADFTPQAVFGLHVFSSVQAGKIAVRSGPLMAASDRFAIKMIGRQTHGSAPWNGIDPIVASADMIGAAQTVISRRANLSKQPAVLSFGAIKGGIRYNIIPDDVEMVGTIRTFDEGMRQQIFADLKNVAEHTAAAHGAKVQAQVPDQPGNPATVNDPALTARMLPSLQAVVGADNVYEPPLQMGAEDFSFYAQQVPSMFFFVGSTAKGIDPATAPSNHSPQFLLDESSLDVGLRALLQVSLDYLQQG
>NZ_CP009037.1|WP_003484548.1|5162220_5163465_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MSRFWKVTLLVVAVLVVVFVAVRMMGGGNHGKRAGAPDGNDPDNSGPVPVTVVAATTQDVPVYASALGTVTALNTVTVSPQVGGQLMSLNFKEGQEVKKGDLLAQIDPRTLQASYDQALAAKRQNQALLATSRVNYQRSNDPAYKQYVSRTDLDTQRNQVAQYEAAVAANDAQMRSAQVQLQFTRVTAPIDGIAGIRGVDVGNIVTSSSTIVTLTQIRPIYVSFNLPERELQAVRTGQTAAPLAVAALDRGDAHVISSDGKLDVIDNRISADSGTFGARAIFNNTDNALWPGQFVNVRLQLRTIAGGTVVPSQSVQRGPDGDYVYVVGSDNTAQMRTVVQGVEVDDSHVQITKGLKPGERVVTEGQFRLKPGSKVSALKPGETPPEPTEAELKAAKDKQSRGGGPGGRRGGGPR
>NZ_CP009037.1|WP_015463676.1|5163558_5166807_+|MMPL-family-transporter
MGFSTIFIRRPIATSLLMAGVLLLGILGYRQLPVSALPEIDAPSLVVTTQYPGANATTMASLVTTPLERQFGQISGLQMMTSDSSAGLSTIILQFSMERDIDIASQDVQAAIRQATLPSSLPYQPVYNRVNPADAAILTLKLTSDSLPLREVNRYADAILAQRLSQVPGVGLVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTNDQLTDAAQYRETIISYKDGRPVRLADVANVVDGVENDQLAAWADGKQAVLLEIRRQPGANIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHEVKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYLLKPDALPEGEDAHERASAAGKTNLWTRTVGAYERSLDWVLAHQPLTLAVAIGAVALTVVLYVAIPKGLLPEQDTGLITGVVQADQNVAFPQMEQRTQAVAAALRKDPAVTGVAAFIGAGTMNPTLNQGQLSIVLKTRGDREGLDEVLPRLQNAVAGIPGVALFLKPVQDVTLDTRVAATEYQYSISDVDSSELATWAGRMTEAMRKLPELADVDNNLANQGRALELSIDRDKASMLGVPMQTIDDTLYDSFGQRQISTIFTELNQYRVVLEVAPEFRTSTALMNQLAVASNGSGALTGTNATSFGQVTSSNSSTATGVGAQNTGIVVGAGSIIPLAALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKAREELKIPTQVHAQFVGKAAEFTGSQTDIVWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMMCGLSLSVDGIVGIVLLIGIVKKNAIMMIDFAIDARREGATAHDAIRRACLLRFRPIMMTTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMERAGERLRAWRARRAARRDGLNPAPTSERPA
>NZ_CP009037.1|WP_015472886.1|5166987_5170128_+|efflux-RND-transporter-permease-subunit
MNISAPFIKRPIGTSLLAIGLFVIGLMCYLRLGVAALPNIQIPIIFVHATQSGADASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSLVVLVFQSSRNIDSAAQDIQTAINASQSDLPSGLGTPMYSKANPNDDPVIAIALTSETQSADELYNVADSLLAQRLRQITGISSVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIISNDSVSKAADFAQLAISTQSNGRIVRLGDVATVDDGQQDAYQAAWFDGKPAVVMYAFTRAGANIVETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHEVQATLMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALVIAIGFVVDDAIVVIENVMRHLDEGMSRLDAALAGAREIGFTIVSITASLVAVFIPMLFASGMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSPHAEPETPDRFGAWLDRMHERMLRAYTVALDFSLRHALLLSLTPLLLIAATIFLGSAVKKGSFPAQDTGLIWGRANSSATVSFADMVSRQRRITDMLMADPAVKTVGARLGSGRQGSSASFNIELKKRDEGRRDTTAEVVARLSAKADRYPDLDLRLRAIQDLPSDGGGGTSQGAQYRVSLQGNDLAQLQEWLPKLQAALKKNPHLRDVGTDVDTAGLRQNIVIDRAKAARLGISVGAIDGALYGAFGQRSISTIYSDLNQYSVVVNALPSQTATPKALDQIFVPNRAGQMVPITAVATQAPGLAPPQIIHENQYTTMELSYNLAPGVSTGEADLIIKSTVEGLRMPDGIRLSGDDSFNVQLSPNSMGILLLAAVLTVYIVLGMLYESLIHPVTILSTLPAAGVGALLALFITNTELSVISMIALVLLIGIVKKNAIMMIDFALVAQRVHGMDARAAAREASIVRFRPIMMTTMVAILAAVPLAVGLGEGSELRRPLGIAMIGGLVFSQSLTLLSTPALYVIFSCLSERWKARRARARARRAERAAARRPAAQAH
>NZ_CP009037.1|WP_011052564.1|5170310_5171678_-|VOC-family-protein
MRDTAFISPDQIRSWFAQAMSDMYRTEVPLYGDLMSLVAQVNAQTLQANPALAQRLQRNDERARLDLERHGAIRVGTAAELATLRRLFAVMGMQPVGYYDLSVAGVPVHSTAFRPIDEAALSANPFRVFTSLLRLELIEDAALREQAQQILQQRQIFTVGALQLIERYEQQGGLDADQARQFVAEALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQMQRAGIDAKAVIEGPPRRRVPILLRQTSFKALEEPVRFVGDDGQPEHGTHTARFGEIEQRGLALTPKGRALYDALLAQARDADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRYALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPVSAAGIFQSNLGGAEQRAYAAHSSKRSFEQALGAQVHDEFALYAQLERESLQGLLA

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Crispr_ID: NZ_CP009037_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009037_8

5157275-5158492

TypeI

I-C

Consensus_repeat	Method
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	PILER-CR
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CRT

18 spacers

cas1,cas4,cas7,cas8c,cas3

The CRISPR arrays of NZ_CP009037_8

>merge|NZ_CP009037|8|5157275-5158492|PILER-CR,CRISPRCasFinder,CRT
GTCGCGCCCTCACGGGCGCGTGGATTGAAACTCGAGCGCATCGATGACGGTCACCCATCCCCCAATGGTCGCGCCCTCACGGGCGCGTGGATTGAAACGTGCCACCGACAGCGACGCACGTGGACCTGCAGATCGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGCGTCGCGCCCTCACGGGCGCGTGGATTGAAACGCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCTGTCGCGCCCTCACGGGCGCGTGGATTGAAACGGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGCGTCGCGCCCTCACGGGCGCGTGGATTGAAACGCCATCATGCTTTGAATGCGCTTACCCACGGCGAAGTCGCGCCCTCACGGGCGCGTGGATTGAAACGCGGATATGTGATTAGACCCTTTTACGACTTTCAGGTCGCGCCCTCACGGGCGCGTGGATTGAAACATGTCGAAAACGATGGCCTTGACGTCATCGTCTGCGTCGCGCCCTCACGGGCGCGTGGATTGAAACTTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTCGTCGCGCCCTCACGGGCGCGTGGATTGAAACTCATTGAACCCAAGGACCACTTCGCAGGGCGACTGTCGCGCCCTCACGGGCGCGTGGATTGAAACTTGACCACATGTTCTCTCTGTGGGAGGAAGGCACGTCGCGCCCTCACGGGCGCGTGGATTGAAACTGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAAGTCGCGCCCTCACGGGCGCGTGGATTGAAACGGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAGGTCGCGCCCTCACGGGCGCGTGGATTGAAACTGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATCGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTGACTATCCCTGCATAGGCCACGACCTGCGAGGGTCGCGCCCTCACGGGCGCGTGGATTGAAACAAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGGGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGTTTCGCGCCCTCATGGGCGCGTGGATTGAAACCATGCCATATGCGGCGAGATCGCACAGCAGAAGGAAGGCGCGCCCTCACGGGCGCGTGGATTGAAAC

>NZ_CP009037|8|3|5157275-5158492|PILER-CR
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCGGATATGTGATTAGACCCTTTTACGACTTTCAG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	ATGTCGAAAACGATGGCCTTGACGTCATCGTCTGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TCATTGAACCCAAGGACCACTTCGCAGGGCGACT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TTGACCACATGTTCTCTCTGTGGGAGGAAGGCAC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGACTATCCCTGCATAGGCCACGACCTGCGAGG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT
TTCGCGCCCTCATGGGCGCGTGGATTGAAAC	CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA
GGCGCGCCCTCACGGGCGCGTGGATTGAAAC

>NZ_CP009037|8|8|5157275-5158492|CRISPRCasFinder
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCGGATATGTGATTAGACCCTTTTACGACTTTCAG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	ATGTCGAAAACGATGGCCTTGACGTCATCGTCTGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TCATTGAACCCAAGGACCACTTCGCAGGGCGACT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TTGACCACATGTTCTCTCTGTGGGAGGAAGGCAC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGACTATCCCTGCATAGGCCACGACCTGCGAGG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT
TTCGCGCCCTCATGGGCGCGTGGATTGAAAC	CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA
GGCGCGCCCTCACGGGCGCGTGGATTGAAAC

>NZ_CP009037|8|2|5157275-5158492|CRT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GCGGATATGTGATTAGACCCTTTTACGACTTTCAG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	ATGTCGAAAACGATGGCCTTGACGTCATCGTCTGC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TCATTGAACCCAAGGACCACTTCGCAGGGCGACT
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TTGACCACATGTTCTCTCTGTGGGAGGAAGGCAC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGACTATCCCTGCATAGGCCACGACCTGCGAGG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG
GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT
TTCGCGCCCTCATGGGCGCGTGGATTGAAAC	CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA
GGCGCGCCCTCACGGGCGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009037.1\|WP_015471496.1\|5156316_5157099_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NZ_CP009037.1\|WP_011052564.1\|5170310_5171678_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319958
NZ_CP009037.1\|WP_003484548.1\|5162220_5163465_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183194
NZ_CP009037.1\|WP_011052553.1\|5142727_5144959_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|377178
NZ_CP009037.1\|WP_015463671.1\|5145160_5146861_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227059
NZ_CP009037.1\|WP_005927109.1\|5147024_5149319_+\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP009037.1\|WP_003484546.1\|5159680_5160496_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NZ_CP009037.1\|WP_005927086.1\|5159284_5159578_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|236880
NZ_CP009037.1\|WP_015472885.1\|5153458_5154493_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP009037.1\|WP_015472886.1\|5166987_5170128_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP009037.1\|WP_005927098.1\|5152823_5153456_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP009037.1\|WP_005927101.1\|5151937_5152804_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP009037.1\|WP_015463679.1\|5172753_5173326_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_015463676.1\|5163558_5166807_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|182501
NZ_CP009037.1\|WP_015472884.1\|5150072_5151941_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP009037.1\|WP_015471495.1\|5155306_5156317_+\|IS21-like-element-ISXci1-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP009037.1\|WP_043927303.1\|5171841_5172459_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009037.1\|WP_011052559.1\|5158622_5159180_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236776
NZ_CP009037.1\|WP_015463674.1\|5160654_5161962_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349917
NZ_CP009037.1\|WP_015463669.1\|5142395_5142656_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009037.1\|WP_015471496.1\|5156316_5157099_+\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	1.26724e-150
NZ_CP009037.1\|WP_011052564.1\|5170310_5171678_-\|VOC-family-protein	gnl\|CDD\|319958	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	0
NZ_CP009037.1\|WP_003484548.1\|5162220_5163465_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	6.8373e-96
NZ_CP009037.1\|WP_003484546.1\|5159680_5160496_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	1.23043e-172
NZ_CP009037.1\|WP_015463671.1\|5145160_5146861_+\|hypothetical-protein	gnl\|CDD\|227059	COG4715, COG4715, Uncharacterized conserved protein [Function unknown].	4.52622e-11
NZ_CP009037.1\|WP_005927109.1\|5147024_5149319_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.95062e-57
NZ_CP009037.1\|WP_005927086.1\|5159284_5159578_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|236880	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional.	4.66511e-26
NZ_CP009037.1\|WP_015472885.1\|5153458_5154493_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP009037.1\|WP_015472886.1\|5166987_5170128_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP009037.1\|WP_005927098.1\|5152823_5153456_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.37841e-44
NZ_CP009037.1\|WP_005927101.1\|5151937_5152804_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.97013e-155
NZ_CP009037.1\|WP_015463676.1\|5163558_5166807_+\|MMPL-family-transporter	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NZ_CP009037.1\|WP_015472884.1\|5150072_5151941_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP009037.1\|WP_015471495.1\|5155306_5156317_+\|IS21-like-element-ISXci1-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.82356e-40
NZ_CP009037.1\|WP_011052559.1\|5158622_5159180_-\|hypothetical-protein	gnl\|CDD\|236776	PRK10856, PRK10856, cytoskeleton protein RodZ.	0.00507177
NZ_CP009037.1\|WP_015463674.1\|5160654_5161962_-\|amidohydrolase	gnl\|CDD\|349917	cd05667, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins that have been predicted as N-acyl-L-amino acid amidohydrolase (amaA), thermostable carboxypeptidase (cpsA-1, cpsA-2 in Sulfolobus solfataricus) and abgB (aminobenzoyl-glutamate utilization protein B), and generally are involved in the urea cycle and metabolism of amino groups. Aminoacylases 1 (ACY1s) comprise a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and is a highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_CP009037.1\|WP_011052553.1\|5142727_5144959_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|377178	pfam03971, IDH, Monomeric isocitrate dehydrogenase. NADP(+)-dependent isocitrate dehydrogenase (ICD) is an important enzyme of the intermediary metabolism, as it controls the carbon flux within the citric acid cycle and supplies the cell with 2-oxoglutarate EC:1.1.1.42 and NADPH for biosynthetic purposes.	0

>NZ_CP009037.1|WP_015471496.1|5156316_5157099_+|AAA-family-ATPase
MGLQHARIAELCEQLKLVRLGNDWPALAQDAARDDASFADFLERVLTSEQAAREERKRTVLMRLATMPAIKTVEQFDWAQAGGAPKAQIVELGHLAFVERAENVVMLGPSGVGKTHIALALCQRAVMAGHKARFITAADLMMQLAAAKAQNRLKDYFNRAVLGPKLLVVDEIGYLPFGRDEANLFFNVVAKRYERGSMVLTSNLPFTQWHSAFADDQTLTAAMLDRLLHHAHIVQIGGESYRLKDKRKAGQTAARVTATA
>NZ_CP009037.1|WP_015471495.1|5155306_5156317_+|IS21-like-element-ISXci1-family-transposase
MLTQEQAVEIRVMARRGESVRAIAKQLECSRNTVRRYLRDQDARRYGPRESRACKLDGYQSYLRERVVQAHPRWIPATVLLREIQGRGYTGGISQLKAFLAPLKQSEPEPLVRFETPPGQQMQVDFTYVRRGRDPLLALVATLGYSRASYVKFVACAGEDMTTLCTGLREAFDYFGGVPEHVLFDNTKAVVIERDAYGEGQHRWNSALRELADTCGFKPRLCRPYRAKTKGKVERFNAYLKGSFVVPLAATLEASGLRLDAHLANVHVRRWLDEVANARVHATTKAVPAVRLAEERAVMLAAPALKAPPPIHQRVVLPLQSLQHPLCVYDALLEVV
>NZ_CP009037.1|WP_015472885.1|5153458_5154493_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRRQLNTLYVTTDGAWLHKDGANVVLNVERQERTRLPVHMLESIVCIGRVGVSPQLLGFCAEQGISICYLTAQGRFLARVEGPVSGNVLLRREQYRCSDDPVRCAAIVGHMLAGKIHNQRAVLARGWRDHGDRMIDIPAFQHALKRLKRIPQRLLIETSVDVLRGLEGEAAQSYFGVFGQLVRTESPLLRFGGRNRRPPRDAFNALLSFLYTLLTHDCRSALETVGLDPAVGFLHRDRPGRPSLALDLAEEFRPLLGERLALSLINRRQLNQRDFQVFDNGAVLLKDDARKTVLIAYQERKREQLQHALLGEKIDIGLLPFVQAQLMARHLRGDLDGYPSFFWK
>NZ_CP009037.1|WP_005927098.1|5152823_5153456_+|CRISPR-associated-protein-Cas4
MDDDDLIPLSALQHYLYCPRQCALIHVERQWAENRHTAEGRLLHERADVAHTQRRRGVRTVTAMPLLALELGITGKADVVEFHHDPAGEFAFPVEYKRGRPKSHRADEVQLCAQALCLESMLKRPVDAGALFYGQTRRRKDVVFDPALRELTQRTIAETRALLSHGLTPGARYDSKRCDACSLIDLCQPRLLGRGSVDTWLRRQLDAEEE
>NZ_CP009037.1|WP_005927101.1|5151937_5152804_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSAIAHRYEFVYLFDVANGNPNGDPDAGNLPRLDPETNRGLVTDVALKRKIRNYVALEKDNAPGYTIYMQEKSVLNNQHKQAYTALGIEHEAKKLPKEGDKARQLTAWMCENFFDVRTFGAVMTTEVNTGQVRGPVQLAFATSVEPVLPLEVSITRVAVTNEKDLEKERTMGRKHILPYGLYRAHGFVSAKLAERTGFSEEDLQLLWRALTNLFEHDRSAARGEMAARKLIVFEHEHPMGNAPAHVLFDKVKVERIDQADQGPARSFSDYRVVIDHALPAGVSVTELF
>NZ_CP009037.1|WP_015472884.1|5150072_5151941_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILSALADYYHRLLDDPTSGIAAPGYSQEKIGYTIVLDGGGRVVAVEDEHDYDSKKRVAKALSVPQPEKRTVAVKSNFLWDKTSYALGVSASSKRSAQEHAAFKTLHQQALGGSEDPGLRALLTFLDTWSPAQFADHPQFSRHGEALLDTNLVFRLEGDTGYLHQRATARAAWERLQGQSADGASGMCLVSGLRAPLARLHPPIKGFESTGSSIVSFNADAYISYRGSLLKVQSKHKENDSGANAPISKSAAFAYTTALNHLLRRDPRNRQRVQIGDTTVVFWAQARTTAHAEEAEDLIADFLRGGETEGPGIADGQATQRLHLALEQVRQARPLREMDDALDDDARIFVLGLAPNASRLSIRFWETQTLAGFAARLAAHYQDLKLEPPAWKRAPTPQFLALQTAPVYGEHGKPKAEDVSPLLAGELTRAILAGTRYPRSLLGGIVMRFRADGQVNPLRVALCRAVLAREARLDTQQGLSSTKGEPPVSLDTANTDPGYLLGRLFSSLENLQRTALGGQVNATIRDRYYGAASATPASIFPVLLRNAQNHFGKLRKDKAGLAVNLEKEVGQIIDALPASFPRSLPIHEQGRFAIGYYHQTQARFARNNGQDAPDTASEGEPT
>NZ_CP009037.1|WP_005927109.1|5147024_5149319_+|CRISPR-associated-endonuclease-Cas3''
MDFFAHSTKRQDRSDWQRLADHLLAVGERAARNAAPFGGQLLASLAGQLHDLGKYTQKFQGRLDGDPARVDHATWGARIACERYGTAGTLLAYGIAGHHAGLADGRPGHAAQSRPSLHERLSEDYRERELPPLLSDWERELSLPAKLALPDGFIGHPRQERRPFQLTVLTRMIFSCLVDSDFTETDDFYRRLEGRQSRAEDTGTRPALPELRQCLDAHLSTLPTEGGINPLRAQILSEVRAKAGMRPGLFSLTVPTGGGKTLASLAFALDHAIAHGLRRVIYVIPFTSIVEQTVQVFRHALGVQERDDIVLEHHSAFFDDPTKAPQSIDKRKLAMENWDAPIVVTTAVQFFESLFADRPSRCRKLHNIAGSVVVLDEAQTLPHALLRPCVALLDELARNYRVSPVLCTATQPTLRLDQGFVGGLDQVRELVDDPPALYARLRRVQVRHVGTLDDAALTDHLRQREQVLCIVNNRRHARHLFDAIADRPGARHLTTLMHARHRSAVLAELREDLKAGRPCRLVATSLIEAGVDVDFPTVLRAEAGLDSIAQAAGRCNREGLRPVEVSQVQVFAPANPDWAPPKELDLFAEVFRGIERTHRNDLLAMAAVADYFAALYRRLGDGRLDREDVLGLLRDADIKGLPLDTLARKFKMIQTTLRPLIVPYAPYAEGCDKEVPEVADILRQLEHAEHVGVAGAARRLQPWLVQVPEQAYRALWQANAIAPVAQARYGEQFVRLVNPRLYDPRFGLRWDDSPQFLAAEALVQ
>NZ_CP009037.1|WP_015463671.1|5145160_5146861_+|hypothetical-protein
MTARFSPADLDRSFLLGITTPSYYARGLVYADQDRVTLQTVEALRVDALVSGSDDYAVELVWRNGRLLGRCDCPVGQQAEFCKHQVAVALSWARTSADPSSQKRTKRTTAGMPVAESSDRVLQHWLSTLTTQALQALILELADNDVQLRKRLLSQAQLAVAPLQQWRKAISTLLGRKRFMDWSATIAYSRQLGVLPSLLEQARQRDPLAALDLHEYAFKRLLAIYEEVDDSRGDLGERLRVLGHAHLEAARAAGTDTLGDRLFELRMLDQWSLLRPLQDYAALLSATDIARLQHAALEILHARGNRARRLSAESLLEDTARCGGSVDAMLEFFAHTCSSGWDHLEMARRCGEHGRQRQALEWLERGVKADPQDGRLLAALATAYVHDGFPEDALTLRWKAYLLMPNEETYLALQEAASLLDAWEAWRERALQALDTKAVPRFIDAHDTRISLLLAEEQIQRALELAADQTRKLPLGTWEQLLPAAETCDPAAALRICHTVIGMHIERTVRQGYVAAIRLLPTLQRLYQQQGGQGHAAFDAELARLRQQYRVKRTFIELLHKRFPAP
>NZ_CP009037.1|WP_011052553.1|5142727_5144959_-|NADP-dependent-isocitrate-dehydrogenase
MSKTPKILYTLTDEAPYLATQSLLPIIDAYTDTAGIVVETRDISLAGRILALFPEHLSDTQKIADDLAELGELATTPEANIIKLPNISASVPQLKAAIKELQGQGYALPAYPDEPKDAAEKDIKARYDRVKGSAVNPVLREGNSDRRAPLSVKNYARKHPHRMGKWSSDSKSHVSHMESGDFFGSEQSATIADAGTLKIEFVGADGSSTVLKDKVAVKAGEIVDAAVLSKRALASFIDAQIADAKARDVLFSVHLKATMMKVSDPVLFGVVVGEFYKDTLSKHADALKSVGFDPNNGIGDLYARIGTLPEEQQAQITADIQAEYAQRPGLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGQMWNAQGKLQDTKAVIPDRCYADVYQAVIDDCKAHGAFDPSTMGSVPNVGLMAQKAEEYGSHDKTFQMSGAGTVKVTDGNGKTVFEHAVEAGDLWRMCQVKDAPIQDWVKLAVERARLSETPAVFWLDKARAHDAQVIAKVEQYLKDHDTNGLDIRILPPVEATTFSLERIRKGQDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEENCLRWDSLGEFLALAASLEHLGNRYDNPSATVLAKALDVANGQFLDNNKSPARKVGELDNRGSHFYLAMYWAQALAAQTEDMALQAKFAPLAKALTGNEATIVAELNGAQGKPVEIGGYYHPDLAKVSESMRPSKTFNDILATLKA
>NZ_CP009037.1|WP_015463669.1|5142395_5142656_+|hypothetical-protein
MRIFSELLFQHGHIADVALAQRLAEPDTAAEAMQRHTARESLGSPVSPQPNVQTMTDPPSQTRRERRIARLSRRLLRGVTALSPFR
>NZ_CP009037.1|WP_011052559.1|5158622_5159180_-|hypothetical-protein
MRTTSVSSSLALALAGVLAVSGCSKKADDDSVSKDPTSGAATEAMPGPAATPPASDQAAQGSATGAASTDGGAATGSAVTVSSVAVGTQAAADKTVTPATSVGSKDTIIVSVKTDGSASNVAVSAKLTYQDGQVAGEQNATLNTTGAETTNLSFSKPDGWPAGTYTAQVMVDGKPAGTPQTIIVK
>NZ_CP009037.1|WP_005927086.1|5159284_5159578_-|LysM-peptidoglycan-binding-domain-containing-protein
MSVDKKADFSNVTSSVDSTAEVTPAPDFSNVRTSVQSTAQLVEESVTVQAGDSLSSIAKRHLGDGNLWPRIFEANRETLQDPDKIFPGQVLRLPPKS
>NZ_CP009037.1|WP_003484546.1|5159680_5160496_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MNTPEDSTLGREVAYPSGYDPSLLFPIPRAAGRQAIGLTGDLPFIGRDRWHAYELSWLDAQGKPCVATATLHVPCDSPSLIESKSLKLYLNSLNATRFNSAEAVRTRIATDLSTRAGADVAVEFGLPPIDAVGEGESIDALDLSIDDYGPPNAAYLCAHAQPVVEEVLTSALLKSNCPVTGQPDWASVTLRYRGAPIDREGLLRYLVSFRDHAEFHEQCVERIFNDVLTQCAPQWLVVEARYTRRGGLDINPLRSSASVPTPLSIFRDLRQ
>NZ_CP009037.1|WP_015463674.1|5160654_5161962_-|amidohydrolase
MRPSRLLTSALLLALPMLATAQTAQRPDVQAAAAPLQAKVVQWRRDFHQHPELSNREERTAATVAAQLRKLGLKPRTGIAHHGVVAIIKGAKPGPKIALRADMDALPVTEQTGLPFASKATAEYRGEQVGVMHACGHDAHTAILLGVAEALVGMREQLPGEVMLIFQPSEEGAPGNEEGGASLMLKEGLFADFTPQAVFGLHVFSSVQAGKIAVRSGPLMAASDRFAIKMIGRQTHGSAPWNGIDPIVASADMIGAAQTVISRRANLSKQPAVLSFGAIKGGIRYNIIPDDVEMVGTIRTFDEGMRQQIFADLKNVAEHTAAAHGAKVQAQVPDQPGNPATVNDPALTARMLPSLQAVVGADNVYEPPLQMGAEDFSFYAQQVPSMFFFVGSTAKGIDPATAPSNHSPQFLLDESSLDVGLRALLQVSLDYLQQG
>NZ_CP009037.1|WP_003484548.1|5162220_5163465_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MSRFWKVTLLVVAVLVVVFVAVRMMGGGNHGKRAGAPDGNDPDNSGPVPVTVVAATTQDVPVYASALGTVTALNTVTVSPQVGGQLMSLNFKEGQEVKKGDLLAQIDPRTLQASYDQALAAKRQNQALLATSRVNYQRSNDPAYKQYVSRTDLDTQRNQVAQYEAAVAANDAQMRSAQVQLQFTRVTAPIDGIAGIRGVDVGNIVTSSSTIVTLTQIRPIYVSFNLPERELQAVRTGQTAAPLAVAALDRGDAHVISSDGKLDVIDNRISADSGTFGARAIFNNTDNALWPGQFVNVRLQLRTIAGGTVVPSQSVQRGPDGDYVYVVGSDNTAQMRTVVQGVEVDDSHVQITKGLKPGERVVTEGQFRLKPGSKVSALKPGETPPEPTEAELKAAKDKQSRGGGPGGRRGGGPR
>NZ_CP009037.1|WP_015463676.1|5163558_5166807_+|MMPL-family-transporter
MGFSTIFIRRPIATSLLMAGVLLLGILGYRQLPVSALPEIDAPSLVVTTQYPGANATTMASLVTTPLERQFGQISGLQMMTSDSSAGLSTIILQFSMERDIDIASQDVQAAIRQATLPSSLPYQPVYNRVNPADAAILTLKLTSDSLPLREVNRYADAILAQRLSQVPGVGLVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTNDQLTDAAQYRETIISYKDGRPVRLADVANVVDGVENDQLAAWADGKQAVLLEIRRQPGANIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHEVKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYLLKPDALPEGEDAHERASAAGKTNLWTRTVGAYERSLDWVLAHQPLTLAVAIGAVALTVVLYVAIPKGLLPEQDTGLITGVVQADQNVAFPQMEQRTQAVAAALRKDPAVTGVAAFIGAGTMNPTLNQGQLSIVLKTRGDREGLDEVLPRLQNAVAGIPGVALFLKPVQDVTLDTRVAATEYQYSISDVDSSELATWAGRMTEAMRKLPELADVDNNLANQGRALELSIDRDKASMLGVPMQTIDDTLYDSFGQRQISTIFTELNQYRVVLEVAPEFRTSTALMNQLAVASNGSGALTGTNATSFGQVTSSNSSTATGVGAQNTGIVVGAGSIIPLAALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKAREELKIPTQVHAQFVGKAAEFTGSQTDIVWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMMCGLSLSVDGIVGIVLLIGIVKKNAIMMIDFAIDARREGATAHDAIRRACLLRFRPIMMTTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMERAGERLRAWRARRAARRDGLNPAPTSERPA
>NZ_CP009037.1|WP_015472886.1|5166987_5170128_+|efflux-RND-transporter-permease-subunit
MNISAPFIKRPIGTSLLAIGLFVIGLMCYLRLGVAALPNIQIPIIFVHATQSGADASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSLVVLVFQSSRNIDSAAQDIQTAINASQSDLPSGLGTPMYSKANPNDDPVIAIALTSETQSADELYNVADSLLAQRLRQITGISSVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIISNDSVSKAADFAQLAISTQSNGRIVRLGDVATVDDGQQDAYQAAWFDGKPAVVMYAFTRAGANIVETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHEVQATLMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALVIAIGFVVDDAIVVIENVMRHLDEGMSRLDAALAGAREIGFTIVSITASLVAVFIPMLFASGMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSPHAEPETPDRFGAWLDRMHERMLRAYTVALDFSLRHALLLSLTPLLLIAATIFLGSAVKKGSFPAQDTGLIWGRANSSATVSFADMVSRQRRITDMLMADPAVKTVGARLGSGRQGSSASFNIELKKRDEGRRDTTAEVVARLSAKADRYPDLDLRLRAIQDLPSDGGGGTSQGAQYRVSLQGNDLAQLQEWLPKLQAALKKNPHLRDVGTDVDTAGLRQNIVIDRAKAARLGISVGAIDGALYGAFGQRSISTIYSDLNQYSVVVNALPSQTATPKALDQIFVPNRAGQMVPITAVATQAPGLAPPQIIHENQYTTMELSYNLAPGVSTGEADLIIKSTVEGLRMPDGIRLSGDDSFNVQLSPNSMGILLLAAVLTVYIVLGMLYESLIHPVTILSTLPAAGVGALLALFITNTELSVISMIALVLLIGIVKKNAIMMIDFALVAQRVHGMDARAAAREASIVRFRPIMMTTMVAILAAVPLAVGLGEGSELRRPLGIAMIGGLVFSQSLTLLSTPALYVIFSCLSERWKARRARARARRAERAAARRPAAQAH
>NZ_CP009037.1|WP_011052564.1|5170310_5171678_-|VOC-family-protein
MRDTAFISPDQIRSWFAQAMSDMYRTEVPLYGDLMSLVAQVNAQTLQANPALAQRLQRNDERARLDLERHGAIRVGTAAELATLRRLFAVMGMQPVGYYDLSVAGVPVHSTAFRPIDEAALSANPFRVFTSLLRLELIEDAALREQAQQILQQRQIFTVGALQLIERYEQQGGLDADQARQFVAEALETFRWHGDATVSLPTYRALSQAHKLIADVVSFHGPHINHLTPRTLDIDAAQEQMQRAGIDAKAVIEGPPRRRVPILLRQTSFKALEEPVRFVGDDGQPEHGTHTARFGEIEQRGLALTPKGRALYDALLAQARDADGAGSTGTDYATRLQTAFVAFPDDEALLRQEGLGYFRYALTDAGRADPAQVAAMPAETAIALGLVSADPIIYEDFLPVSAAGIFQSNLGGAEQRAYAAHSSKRSFEQALGAQVHDEFALYAQLERESLQGLLA
>NZ_CP009037.1|WP_043927303.1|5171841_5172459_-|hypothetical-protein
MRHHRCMPVSRSSVLRSVSLLVASLWPALGAAQAPPASATAAATEEAAPAVTPGTGDAWVDQHLADMGSYAQRYPASFIDEVARYTGTPRAYVQALLQVHGWHAGDIYFACFWAQTVQLSCRDTVRAYSRDHRDGWEGVVTRLSVAPDNLYMRALRHAIVASYDRWERPITLDALLRRQLGDHAQRLEAARQASEAAEAAAQAGL
>NZ_CP009037.1|WP_015463679.1|5172753_5173326_-|hypothetical-protein
MTMLSMTQRASLALLLLLLIGAVPLAAAELEEEIIHPSEVIFRNGQPYYDDGGDYIRLQTRQVDGEPVYFRTVRFDREQGYVDAQGESVARLQARPSDRDRGAGFVGAGYDERYVGDGGYRAVGGPLRLGASRNRPYGQIYYGNGLYGPDPYSSPHNRDARQRDIGPGYIGSCDLSGCHEVHQFGFYDLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP009037_6	6.1\|2905927\|40\|NZ_CP009037\|CRISPRCasFinder	2905927-2905966	40	NZ_CP009037.1	2900381-2900420	1.0
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP009037.1	1776074-1776104	1.0
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NZ_CP009037.1	1776071-1776104	1.0

1. spacer 6.1|2905927|40|NZ_CP009037|CRISPRCasFinder matches to position: 2900381-2900420, mismatch: 0, identity: 1.0

tccctaagcccttgcctgcatcaagttttgcggcgaccag	CRISPR spacer
tccctaagcccttgcctgcatcaagttttgcggcgaccag	Protospacer
****************************************

2. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to position: 1776074-1776104, mismatch: 0, identity: 1.0

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgc	Protospacer
*******************************

3. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to position: 1776071-1776104, mismatch: 0, identity: 1.0

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgccga	Protospacer
**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	MK512531	Xanthomonas phage Cf2, complete genome	4186-4216	0	1.0
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	MK512531	Xanthomonas phage Cf2, complete genome	4186-4219	0	1.0
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	841349-841379	6	0.806
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	841095-841125	6	0.806
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	741214-741244	6	0.806
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	811280-811310	6	0.806
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	740329-740359	6	0.806
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	742907-742937	6	0.806
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	742896-742926	6	0.806
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	741201-741231	6	0.806
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	741220-741250	6	0.806
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	741198-741228	6	0.806
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	841418-841448	6	0.806
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	841417-841447	6	0.806
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	841402-841432	6	0.806
NZ_CP009037_1	1.5\|27476\|31\|NZ_CP009037\|CRISPRCasFinder	27476-27506	31	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	934481-934511	6	0.806
NZ_CP009037_1	1.7\|27587\|34\|NZ_CP009037\|CRISPRCasFinder	27587-27620	34	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1614842-1614875	6	0.824
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	513842-513872	7	0.774
NZ_CP009037_1	1.5\|27476\|31\|NZ_CP009037\|CRISPRCasFinder	27476-27506	31	NZ_CP015279	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence	150331-150361	7	0.774
NZ_CP009037_1	1.5\|27476\|31\|NZ_CP009037\|CRISPRCasFinder	27476-27506	31	NZ_CP015280	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence	81610-81640	7	0.774
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP018472	Xanthomonas perforans strain LH3 plasmid pLH3.1, complete sequence	23734-23764	7	0.774
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP023287	Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pP2, complete sequence	95777-95807	7	0.774
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP022264	Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plA, complete sequence	64029-64059	7	0.774
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP041964	Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1	44460-44490	7	0.774
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP018464	Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.1, complete sequence	149304-149334	7	0.774
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP022265	Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plC, complete sequence	30912-30942	7	0.774
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP024030	Xanthomonas citri pv. citri strain Xcc49 plasmid pXAC64, complete sequence	52195-52225	7	0.774
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP020888	Xanthomonas citri pv. citri strain TX160149 plasmid unnamed3, complete sequence	47361-47391	7	0.774
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP013664	Xanthomonas citri pv. citri strain jx-6 plasmid pXAC64, complete sequence	53209-53239	7	0.774
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP024033	Xanthomonas citri pv. citri strain Xcc29-1 plasmid pXAC64, complete sequence	52202-52232	7	0.774
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NC_020797	Xanthomonas axonopodis Xac29-1 plasmid pXAC64, complete sequence	52181-52211	7	0.774
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP018734	Xanthomonas gardneri strain ICMP 7383 plasmid pICMP7383.3, complete sequence	2004-2034	7	0.774
NZ_CP009037_1	1.7\|27587\|34\|NZ_CP009037\|CRISPRCasFinder	27587-27620	34	MH271303	Microbacterium phage MementoMori, complete genome	20739-20772	8	0.765
NZ_CP009037_1	1.7\|27587\|34\|NZ_CP009037\|CRISPRCasFinder	27587-27620	34	MN813682	Microbacterium phage Matzah, complete genome	21015-21048	8	0.765
NZ_CP009037_1	1.7\|27587\|34\|NZ_CP009037\|CRISPRCasFinder	27587-27620	34	MK937591	Microbacterium phage Cinna, complete genome	21039-21072	8	0.765
NZ_CP009037_1	1.8\|27644\|31\|NZ_CP009037\|CRISPRCasFinder	27644-27674	31	NZ_CP050094	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence	380719-380749	8	0.742
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP041964	Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1	638-668	8	0.742
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	989277-989307	8	0.742
NZ_CP009037_7	7.3\|5155156\|30\|NZ_CP009037\|PILER-CR	5155156-5155185	30	NZ_CP026546	Cupriavidus metallidurans strain Ni-2 plasmid unnamed2	103201-103230	8	0.733
NZ_CP009037_8	8.10\|5157903\|34\|NZ_CP009037\|PILER-CR,CRISPRCasFinder,CRT	5157903-5157936	34	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	2311351-2311384	8	0.765
NZ_CP009037_8	8.12\|5158033\|34\|NZ_CP009037\|PILER-CR,CRISPRCasFinder,CRT	5158033-5158066	34	NC_011758	Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence	22164-22197	8	0.765
NZ_CP009037_8	8.17\|5158361\|34\|NZ_CP009037\|PILER-CR,CRISPRCasFinder,CRT	5158361-5158394	34	MH271303	Microbacterium phage MementoMori, complete genome	25878-25911	8	0.765
NZ_CP009037_8	8.17\|5158361\|34\|NZ_CP009037\|PILER-CR,CRISPRCasFinder,CRT	5158361-5158394	34	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	74475-74508	8	0.765
NZ_CP009037_8	8.17\|5158361\|34\|NZ_CP009037\|PILER-CR,CRISPRCasFinder,CRT	5158361-5158394	34	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	73546-73579	8	0.765
NZ_CP009037_1	1.4\|27422\|31\|NZ_CP009037\|CRISPRCasFinder	27422-27452	31	NZ_CP013739	Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence	114529-114559	9	0.71
NZ_CP009037_8	8.17\|5158361\|34\|NZ_CP009037\|PILER-CR,CRISPRCasFinder,CRT	5158361-5158394	34	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	907251-907284	9	0.735
NZ_CP009037_8	8.17\|5158361\|34\|NZ_CP009037\|PILER-CR,CRISPRCasFinder,CRT	5158361-5158394	34	KT221034	Streptomyces phage SF3, complete genome	35711-35744	9	0.735
NZ_CP009037_8	8.17\|5158361\|34\|NZ_CP009037\|PILER-CR,CRISPRCasFinder,CRT	5158361-5158394	34	MK937591	Microbacterium phage Cinna, complete genome	26190-26223	9	0.735
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	MG592582	Vibrio phage 1.211.B._10N.222.52.F11, partial genome	14372-14402	10	0.677
NZ_CP009037_7	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	MG592581	Vibrio phage 1.211.A._10N.222.52.F11, partial genome	14372-14402	10	0.677
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NZ_CP018472	Xanthomonas perforans strain LH3 plasmid pLH3.1, complete sequence	23731-23764	10	0.706
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NZ_CP041964	Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1	44460-44493	10	0.706
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NZ_CP023287	Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pP2, complete sequence	95774-95807	10	0.706
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NZ_CP018464	Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.1, complete sequence	149304-149337	10	0.706
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NZ_CP022264	Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plA, complete sequence	64026-64059	10	0.706
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NZ_CP022265	Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plC, complete sequence	30912-30945	10	0.706
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NZ_CP024030	Xanthomonas citri pv. citri strain Xcc49 plasmid pXAC64, complete sequence	52195-52228	10	0.706
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NZ_CP020888	Xanthomonas citri pv. citri strain TX160149 plasmid unnamed3, complete sequence	47361-47394	10	0.706
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NZ_CP013664	Xanthomonas citri pv. citri strain jx-6 plasmid pXAC64, complete sequence	53209-53242	10	0.706
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NZ_CP024033	Xanthomonas citri pv. citri strain Xcc29-1 plasmid pXAC64, complete sequence	52202-52235	10	0.706
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NC_020797	Xanthomonas axonopodis Xac29-1 plasmid pXAC64, complete sequence	52181-52214	10	0.706
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NZ_CP018734	Xanthomonas gardneri strain ICMP 7383 plasmid pICMP7383.3, complete sequence	2004-2037	10	0.706
NZ_CP009037_8	8.11\|5157968\|34\|NZ_CP009037\|PILER-CR,CRISPRCasFinder,CRT	5157968-5158001	34	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1512440-1512473	10	0.706
NZ_CP009037_8	8.11\|5157968\|34\|NZ_CP009037\|PILER-CR,CRISPRCasFinder,CRT	5157968-5158001	34	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	660477-660510	10	0.706
NZ_CP009037_8	8.17\|5158361\|34\|NZ_CP009037\|PILER-CR,CRISPRCasFinder,CRT	5158361-5158394	34	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1028825-1028858	10	0.706
NZ_CP009037_1	1.7\|27587\|34\|NZ_CP009037\|CRISPRCasFinder	27587-27620	34	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	72444-72477	11	0.676
NZ_CP009037_7	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	NZ_CP041964	Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1	638-671	11	0.676
NZ_CP009037_1	1.7\|27587\|34\|NZ_CP009037\|CRISPRCasFinder	27587-27620	34	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	22147-22180	12	0.647
NZ_CP009037_1	1.7\|27587\|34\|NZ_CP009037\|CRISPRCasFinder	27587-27620	34	NZ_CP023152	Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence	116465-116498	12	0.647
NZ_CP009037_8	8.3\|5157440\|34\|NZ_CP009037\|PILER-CR,CRISPRCasFinder,CRT	5157440-5157473	34	NZ_KJ599675	Micrococcus sp. A7 plasmid pLMA7, complete sequence	16347-16380	12	0.647

1. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to MK512531 (Xanthomonas phage Cf2, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgc	Protospacer
*******************************

2. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to MK512531 (Xanthomonas phage Cf2, complete genome) position: , mismatch: 0, identity: 1.0

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgccga	Protospacer
**********************************

3. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

4. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

5. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

6. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

7. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

8. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

9. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

10. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

11. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

12. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

13. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

14. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

15. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gagaccggtgccggcgcgcaaacctacgatg	Protospacer
****.*********.********* * .*.*

16. spacer 1.5|27476|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 6, identity: 0.806

cgcatcggcgacaacgcgcgtaccg-gtggcg	CRISPR spacer
cgcagcggcgacaacgcgcgcaccatcttgc-	Protospacer
**** ***************.***.  * **

17. spacer 1.7|27587|34|NZ_CP009037|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.824

ctcgccgagcgcggcagccagatcagtggcggcg-	CRISPR spacer
ttcgtcgagcgcggcagccagatca-tggggctgg	Protospacer
.***.******************** *** * .*

18. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 7, identity: 0.774

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
gcattgggtgccggtgcgcaagccaacaaca	Protospacer
* . * ***************.**** ***.

19. spacer 1.5|27476|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP015279 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

20. spacer 1.5|27476|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP015280 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

21. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP018472 (Xanthomonas perforans strain LH3 plasmid pLH3.1, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

22. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP023287 (Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pP2, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

23. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP022264 (Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plA, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

24. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP041964 (Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

25. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP018464 (Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.1, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

26. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP022265 (Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plC, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

27. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP024030 (Xanthomonas citri pv. citri strain Xcc49 plasmid pXAC64, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

28. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP020888 (Xanthomonas citri pv. citri strain TX160149 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

29. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP013664 (Xanthomonas citri pv. citri strain jx-6 plasmid pXAC64, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

30. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP024033 (Xanthomonas citri pv. citri strain Xcc29-1 plasmid pXAC64, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

31. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NC_020797 (Xanthomonas axonopodis Xac29-1 plasmid pXAC64, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

32. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP018734 (Xanthomonas gardneri strain ICMP 7383 plasmid pICMP7383.3, complete sequence) position: , mismatch: 7, identity: 0.774

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgc	Protospacer
 **    ** ******************.**

33. spacer 1.7|27587|34|NZ_CP009037|CRISPRCasFinder matches to MH271303 (Microbacterium phage MementoMori, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

34. spacer 1.7|27587|34|NZ_CP009037|CRISPRCasFinder matches to MN813682 (Microbacterium phage Matzah, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

35. spacer 1.7|27587|34|NZ_CP009037|CRISPRCasFinder matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * **

36. spacer 1.8|27644|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 8, identity: 0.742

gggctggtgggaaccgagctcggcaagggca	CRISPR spacer
ctgctggtgggaatcgagttcggcaccgcaa	Protospacer
  ***********.****.******  *  *

37. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP041964 (Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1) position: , mismatch: 8, identity: 0.742

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
tgggggtagatccgccgcctgatccgctcgc	Protospacer
. *    ** ******************.**

38. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
tcgagcaatctccgccgcctgatcggctgga	Protospacer
..*  *** *************** *** *

39. spacer 7.3|5155156|30|NZ_CP009037|PILER-CR matches to NZ_CP026546 (Cupriavidus metallidurans strain Ni-2 plasmid unnamed2) position: , mismatch: 8, identity: 0.733

ctcgggtttcgggatgtgcttcagatctgc	CRISPR spacer
gatgaacttcgtgatgtgctccagatctgc	Protospacer
  .*...**** ********.*********

40. spacer 8.10|5157903|34|NZ_CP009037|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 8, identity: 0.765

tcattgaacccaaggaccacttcgcagggcgact----	CRISPR spacer
tcattgaaccaacggaccacttc----ggcgctttcac	Protospacer
********** * **********    **** .*

41. spacer 8.12|5158033|34|NZ_CP009037|PILER-CR,CRISPRCasFinder,CRT matches to NC_011758 (Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence) position: , mismatch: 8, identity: 0.765

tgtcgagcgcgcactgctgccgcgatggccggaa	CRISPR spacer
tgcggcctgtgcactgctgccgccatggccagaa	Protospacer
**. *  .*.************* ******.***

42. spacer 8.17|5158361|34|NZ_CP009037|PILER-CR,CRISPRCasFinder,CRT matches to MH271303 (Microbacterium phage MementoMori, complete genome) position: , mismatch: 8, identity: 0.765

ctgagttcgtcgccgtcccggtcgtctgacgcgt	CRISPR spacer
ccacgttcgtcgccgtcacggtcgtctgcccctg	Protospacer
*.. ************* ********** * *

43. spacer 8.17|5158361|34|NZ_CP009037|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.765

ctgagttcg---tcgccgtcccggtcgtctgacgcgt	CRISPR spacer
---aactcggcatcgccgtcccgatcgcctgacgcgc	Protospacer
   *..***   ***********.***.********.

44. spacer 8.17|5158361|34|NZ_CP009037|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.765

ctgagttcg---tcgccgtcccggtcgtctgacgcgt	CRISPR spacer
---aactcggcatcgccgtcccgatcgcctgacgcgc	Protospacer
   *..***   ***********.***.********.

45. spacer 1.4|27422|31|NZ_CP009037|CRISPRCasFinder matches to NZ_CP013739 (Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence) position: , mismatch: 9, identity: 0.71

gagatcggtgccggtgcgcaaaccaagaacg	CRISPR spacer
cagagcggtgccggtgcgcatacctctgggg	Protospacer
 *** *************** ***   .. *

46. spacer 8.17|5158361|34|NZ_CP009037|PILER-CR,CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 9, identity: 0.735

ctgagttcgtcgccgtcccggtcgtctgacgcgt	CRISPR spacer
gggagttcggcgccgtctcggtcgtctccggcca	Protospacer
  ******* *******.*********   **

47. spacer 8.17|5158361|34|NZ_CP009037|PILER-CR,CRISPRCasFinder,CRT matches to KT221034 (Streptomyces phage SF3, complete genome) position: , mismatch: 9, identity: 0.735

ctgagttcgtcgccgtcccggtcgtctgacgcgt	CRISPR spacer
tcgagctcgtcgccgtcctggtcgtcgtcctcga	Protospacer
..***.************.*******   * **

48. spacer 8.17|5158361|34|NZ_CP009037|PILER-CR,CRISPRCasFinder,CRT matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 9, identity: 0.735

ctgagttcgtcgccgtcccggtcgtctgacgcgt	CRISPR spacer
ccacgttcgtcgccgtcaccgtcgtctgcccctg	Protospacer
*.. ************* * ******** * *

49. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to MG592582 (Vibrio phage 1.211.B._10N.222.52.F11, partial genome) position: , mismatch: 10, identity: 0.677

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
tgcatcaagcacagccgcctgatccgccccg	Protospacer
.   ****** * **************..

50. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to MG592581 (Vibrio phage 1.211.A._10N.222.52.F11, partial genome) position: , mismatch: 10, identity: 0.677

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
tgcatcaagcacagccgcctgatccgccccg	Protospacer
.   ****** * **************..

51. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP018472 (Xanthomonas perforans strain LH3 plasmid pLH3.1, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

52. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP041964 (Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

53. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP023287 (Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pP2, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

54. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP018464 (Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.1, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

55. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP022264 (Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plA, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

56. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP022265 (Xanthomonas citri pv. vignicola strain CFBP7111 plasmid plC, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

57. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP024030 (Xanthomonas citri pv. citri strain Xcc49 plasmid pXAC64, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

58. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP020888 (Xanthomonas citri pv. citri strain TX160149 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

59. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP013664 (Xanthomonas citri pv. citri strain jx-6 plasmid pXAC64, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

60. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP024033 (Xanthomonas citri pv. citri strain Xcc29-1 plasmid pXAC64, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

61. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NC_020797 (Xanthomonas axonopodis Xac29-1 plasmid pXAC64, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtggggtagatccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

62. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP018734 (Xanthomonas gardneri strain ICMP 7383 plasmid pICMP7383.3, complete sequence) position: , mismatch: 10, identity: 0.706

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
gtgggataggtccgccgcctgatccgctcgcgtt	Protospacer
 **    ** ******************.**

63. spacer 8.11|5157968|34|NZ_CP009037|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.706

ttgaccacatgttctctctgtgggaggaaggcac	CRISPR spacer
cctaccacatgttctcgctgtgggcggactacga	Protospacer
.. ************* ******* ***  .*.

64. spacer 8.11|5157968|34|NZ_CP009037|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.706

ttgaccacatgttctctctgtgggaggaaggcac	CRISPR spacer
cctaccacatgttctcgctgtgggcggattacga	Protospacer
.. ************* ******* ***  .*.

65. spacer 8.17|5158361|34|NZ_CP009037|PILER-CR,CRISPRCasFinder,CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 10, identity: 0.706

ctgagttcgtcgccgtcccggtcgtctgacgcgt	CRISPR spacer
gcgagttcggcgccgtctcggtcgtctccggtca	Protospacer
 .******* *******.*********   *.

66. spacer 1.7|27587|34|NZ_CP009037|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 11, identity: 0.676

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
ctcggcgagcgcggcggccagatcctcctccatc	Protospacer
**** **********.********  .  * ..

67. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP041964 (Xanthomonas citri pv. glycines strain 1157 plasmid unnamed1) position: , mismatch: 11, identity: 0.676

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
tgggggtagatccgccgcctgatccgctcgcgtt	Protospacer
. *    ** ******************.**

68. spacer 1.7|27587|34|NZ_CP009037|CRISPRCasFinder matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

69. spacer 1.7|27587|34|NZ_CP009037|CRISPRCasFinder matches to NZ_CP023152 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

70. spacer 8.3|5157440|34|NZ_CP009037|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ599675 (Micrococcus sp. A7 plasmid pLMA7, complete sequence) position: , mismatch: 12, identity: 0.647

ctctctcacgccgcgcgtgcgagatcctgcgtgc	CRISPR spacer
tcgagctacgccgcgcgaacgagatcctgcgcaa	Protospacer
..   ..********** .************..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1204497 : 1265722

Escherichia_phage(50.0%)

transposase,integrase

attL 1239872:1239931|attR 1275953:1277188

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015471710.1\|1204497_1205889_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_015471711.1\|1206248_1206710_+	hypothetical protein	NA	NA	NA	NA
WP_015471712.1\|1207111_1207336_+	hypothetical protein	NA	NA	NA	NA
WP_031423910.1\|1207724_1208204_+	DNA repair protein RadC	NA	NA	NA	NA
WP_015471714.1\|1208505_1208976_+	hypothetical protein	NA	NA	NA	NA
WP_015471715.1\|1209664_1209865_+	hypothetical protein	NA	NA	NA	NA
WP_039583006.1\|1210411_1211071_+	DUF1629 domain-containing protein	NA	NA	NA	NA
WP_015471718.1\|1211106_1213686_+	hypothetical protein	NA	NA	NA	NA
WP_102097774.1\|1213849_1214053_+	hypothetical protein	NA	NA	NA	NA
WP_015471721.1\|1215278_1216790_+	site-specific DNA-methyltransferase	A0A220NUF4	Escherichia_phage	7.8e-63	39.2
WP_015471722.1\|1216792_1219438_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_041471192.1\|1219449_1220514_+	DUF4263 domain-containing protein	NA	NA	NA	NA
WP_031423901.1\|1220862_1221666_-	hypothetical protein	NA	NA	NA	NA
WP_016850722.1\|1221945_1222431_-	hypothetical protein	NA	NA	NA	NA
WP_015471495.1\|1222748_1223759_+\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_015471496.1\|1223758_1224541_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_039582703.1\|1225827_1226220_-	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	3.2e-13	42.5
WP_015471729.1\|1227626_1227953_-	hypothetical protein	NA	NA	NA	NA
WP_015471730.1\|1228212_1229802_+	MobA/MobL family protein	NA	NA	NA	NA
WP_015471731.1\|1229845_1230214_-	hypothetical protein	NA	NA	NA	NA
WP_015463531.1\|1231209_1231869_+	thermonuclease family protein	NA	NA	NA	NA
WP_003490667.1\|1231979_1232372_+	hypothetical protein	NA	NA	NA	NA
WP_003490669.1\|1232462_1232855_+	H-NS histone family protein	NA	NA	NA	NA
WP_011052136.1\|1233484_1235617_-	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_011052133.1\|1237176_1237653_+	hypothetical protein	NA	NA	NA	NA
WP_003490678.1\|1237678_1238356_+	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	7.4e-05	27.4
WP_003490680.1\|1238348_1239683_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
1239872:1239931	attL	NA	NA	NA	NA
WP_087943921.1\|1239897_1241042_-\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
WP_075150055.1\|1241055_1241421_-	type I addiction module toxin, SymE family	NA	NA	NA	NA
WP_108722298.1\|1242055_1246588_-	RHS repeat protein	NA	NA	NA	NA
WP_011052129.1\|1246802_1247411_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_003491180.1\|1247424_1248288_-	prepilin peptidase	NA	NA	NA	NA
WP_040107659.1\|1248294_1249551_-	type II secretion system F family protein	NA	NA	NA	NA
WP_015471735.1\|1249907_1250348_+	pilin	NA	NA	NA	NA
WP_015463526.1\|1250457_1250913_+	pilin	NA	NA	NA	NA
WP_041471193.1\|1250976_1252713_+	type IV-A pilus assembly ATPase PilB	NA	NA	NA	NA
WP_005915819.1\|1253206_1253326_+	hypothetical protein	NA	NA	NA	NA
WP_005930970.1\|1253847_1255242_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_003488599.1\|1255566_1257180_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_005915812.1\|1257411_1258581_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_005921370.1\|1258605_1259481_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_011052123.1\|1259567_1260083_+	hypothetical protein	NA	NA	NA	NA
WP_011052122.1\|1260037_1261153_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_015463521.1\|1261380_1261671_-	hypothetical protein	NA	NA	NA	NA
WP_011052119.1\|1262995_1263886_-	hypothetical protein	A0A1X9IAR5	Xanthomonas_phage	3.3e-05	26.6
WP_080934718.1\|1264019_1264448_-\|integrase	integrase	NA	NA	NA	NA
WP_045714021.1\|1264711_1265722_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	4.8e-69	45.2
1275953:1277188	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1269308 : 1321934

Stenotrophomonas_phage(56.41%)

transposase,terminase,integrase,head,plate,portal,protease,tail,holin,capsid

attL 1265359:1265385|attR 1285465:1285491

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1265359:1265385	attL	NA	NA	NA	NA
WP_011050684.1\|1269308_1270889_-\|terminase	phage terminase large subunit	A0A2R2ZGE7	Ralstonia_phage	6.2e-172	55.1
WP_015462922.1\|1270888_1271134_-	hypothetical protein	M1IPP2	Pelagibacter_phage	3.5e-05	39.0
WP_011050686.1\|1271130_1271403_-	hypothetical protein	NA	NA	NA	NA
WP_015462923.1\|1271872_1273897_-	hypothetical protein	A0A166Y926	Gordonia_phage	3.8e-12	37.9
WP_087943921.1\|1274841_1275985_+\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
WP_040237382.1\|1277102_1278293_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	1.3e-124	56.3
WP_041471194.1\|1278292_1278514_-	hypothetical protein	V9IQX6	Stenotrophomonas_phage	5.7e-15	57.7
WP_080633664.1\|1278716_1278920_-	hypothetical protein	NA	NA	NA	NA
WP_015471749.1\|1278985_1279210_-	hypothetical protein	NA	NA	NA	NA
WP_015471750.1\|1279206_1279479_-	hypothetical protein	NA	NA	NA	NA
WP_157882625.1\|1279477_1279645_+	hypothetical protein	NA	NA	NA	NA
WP_040237431.1\|1279646_1280072_-	hypothetical protein	V9IQL6	Stenotrophomonas_phage	3.6e-18	45.2
WP_015471753.1\|1280149_1280422_-	hypothetical protein	NA	NA	NA	NA
WP_015471754.1\|1280421_1280694_-	hypothetical protein	NA	NA	NA	NA
WP_015471755.1\|1280705_1280924_-	hypothetical protein	NA	NA	NA	NA
WP_015471756.1\|1281247_1283944_-	toprim domain-containing protein	V9IQW5	Stenotrophomonas_phage	0.0e+00	69.6
WP_008572770.1\|1283953_1284166_-	hypothetical protein	NA	NA	NA	NA
WP_015471757.1\|1284162_1284441_-	hypothetical protein	NA	NA	NA	NA
WP_008572766.1\|1284451_1284772_-	hypothetical protein	V9IQW3	Stenotrophomonas_phage	2.0e-24	58.7
WP_008572763.1\|1284774_1285032_-	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	6.6e-07	44.6
WP_015471761.1\|1286137_1287127_-	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	4.7e-93	54.8
1285465:1285491	attR	NA	NA	NA	NA
WP_015471762.1\|1287123_1287525_-\|tail	phage tail protein	V9IQX3	Stenotrophomonas_phage	2.1e-39	63.6
WP_045714025.1\|1287537_1290408_-\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	1.9e-187	46.7
WP_005922203.1\|1290437_1290551_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	4.2e-06	68.6
WP_008572745.1\|1290559_1290862_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	2.2e-25	67.4
WP_015471764.1\|1290907_1291417_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	8.9e-72	78.7
WP_015471765.1\|1291446_1292613_-\|tail	phage tail sheath protein FI	E5FFG9	Burkholderia_phage	2.9e-134	63.9
WP_015471766.1\|1292624_1292984_-\|plate	phage baseplate assembly protein W	V9IQW0	Stenotrophomonas_phage	5.6e-36	64.4
WP_015471768.1\|1293686_1294361_-	hypothetical protein	NA	NA	NA	NA
WP_040237406.1\|1294362_1294656_-	hypothetical protein	NA	NA	NA	NA
WP_015471770.1\|1294733_1296533_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	4.3e-84	39.2
WP_015471771.1\|1296545_1297091_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	4.9e-52	56.5
WP_015471772.1\|1297083_1297974_-\|plate	phage-related baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	8.0e-84	53.0
WP_015471773.1\|1298073_1298451_-	response regulator	NA	NA	NA	NA
WP_108723646.1\|1298527_1299817_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_015471775.1\|1299833_1300217_-	response regulator	NA	NA	NA	NA
WP_015471776.1\|1300340_1300790_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	2.4e-36	55.4
WP_015471777.1\|1300777_1301197_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	1.5e-40	65.2
WP_015471778.1\|1301193_1301682_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	1.3e-27	52.9
WP_015471779.1\|1301681_1302320_-	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	5.1e-48	60.9
WP_015471780.1\|1302319_1302595_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	2.3e-21	59.8
WP_005929454.1\|1302587_1302944_-	membrane protein	V9IQG9	Stenotrophomonas_phage	3.5e-22	56.1
WP_005917735.1\|1302948_1303158_-\|tail	tail protein	K4PAW7	Burkholderia_phage	7.0e-15	59.4
WP_011038096.1\|1303157_1303625_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	2.7e-30	49.0
WP_011038095.1\|1303723_1304443_-\|terminase	terminase	Q9ZXM2	Pseudomonas_virus	7.7e-69	62.8
WP_011038094.1\|1304446_1305463_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	8.4e-138	71.1
WP_015471781.1\|1305511_1306354_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	1.9e-66	52.7
WP_080633666.1\|1306475_1308260_+\|terminase	terminase ATPase subunit family protein	V9IQL5	Stenotrophomonas_phage	6.6e-271	76.8
WP_015471783.1\|1308259_1309273_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	4.0e-140	72.4
WP_015471784.1\|1309297_1309543_+	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	3.7e-15	53.8
WP_011038088.1\|1310662_1311889_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_015471788.1\|1312607_1313894_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	7.5e-83	42.4
WP_015471789.1\|1313893_1314373_-	SOS-response transcriptional regulator (RecA-mediated autopeptidase)	A0A2H4J538	uncultured_Caudovirales_phage	3.0e-13	38.1
WP_005913859.1\|1315107_1316097_+	chemotaxis protein CheB	NA	NA	NA	NA
WP_011050693.1\|1318511_1319804_+	trigger factor	NA	NA	NA	NA
WP_002806026.1\|1319896_1320523_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.0e-56	57.4
WP_015471792.1\|1320647_1321934_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.2e-138	60.1

DBSCAN-SWA_3

1771381 : 1853370

Escherichia_phage(23.81%)

transposase,integrase

attL 1771322:1771381|attR 1809276:1810202

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1771322:1771381	attL	NA	NA	NA	NA
WP_087943921.1\|1771381_1772525_+\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
WP_015471900.1\|1773312_1773585_-	hypothetical protein	NA	NA	NA	NA
WP_040237032.1\|1773822_1774146_-	hypothetical protein	NA	NA	NA	NA
WP_011051352.1\|1774142_1774679_-	hypothetical protein	NA	NA	NA	NA
WP_015471901.1\|1774874_1775201_+	hypothetical protein	S0F2N2	Stenotrophomonas_phage	9.3e-14	43.0
WP_015471902.1\|1775267_1775579_+	hypothetical protein	A0A1W6DXV7	Xanthomonas_phage	1.4e-46	88.3
WP_015471903.1\|1775598_1776933_-	filamentous phage phiLf protein	Q4LAU4	Stenotrophomonas_phage	4.3e-134	57.0
WP_015471904.1\|1776934_1777255_-	hypothetical protein	NA	NA	NA	NA
WP_015471906.1\|1778593_1778722_-	hypothetical protein	NA	NA	NA	NA
WP_015471907.1\|1778748_1779000_-	hypothetical protein	NA	NA	NA	NA
WP_015471908.1\|1779003_1779282_-	hypothetical protein	S0F2M9	Stenotrophomonas_phage	5.4e-31	70.3
WP_041471200.1\|1779260_1780289_-	phage replication protein RstA	S0F3F7	Stenotrophomonas_phage	1.9e-145	71.4
WP_015471911.1\|1780504_1780729_-	hypothetical protein	A0A1W6DXK4	Xanthomonas_phage	4.7e-25	89.9
WP_157733693.1\|1780955_1781267_+	hypothetical protein	NA	NA	NA	NA
WP_003490402.1\|1781298_1782102_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.0e-10	26.7
WP_011051350.1\|1782143_1783670_-	GMC family oxidoreductase	NA	NA	NA	NA
WP_015463185.1\|1783666_1785031_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_040237021.1\|1785323_1785992_-	glycosyltransferase	NA	NA	NA	NA
WP_003490411.1\|1785988_1786591_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_015463183.1\|1786587_1787346_-	PIG-L family deacetylase	NA	NA	NA	NA
WP_040237019.1\|1787333_1787852_-	dehydrogenase	NA	NA	NA	NA
WP_015463181.1\|1788718_1789309_-	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	2.8e-08	36.0
WP_040107619.1\|1789594_1790074_-	BLUF domain-containing protein	NA	NA	NA	NA
WP_040107618.1\|1790395_1790812_+	hypothetical protein	NA	NA	NA	NA
WP_041471201.1\|1791055_1792885_-	hypothetical protein	NA	NA	NA	NA
WP_003489210.1\|1792898_1793498_-	NfuA family Fe-S biogenesis protein	NA	NA	NA	NA
WP_003489213.1\|1793586_1793943_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_005931423.1\|1793939_1794362_+	energy transducer TonB	NA	NA	NA	NA
WP_003489216.1\|1794627_1795446_+	zinc transporter ZupT	NA	NA	NA	NA
WP_015471919.1\|1795739_1797551_+	DUF3300 domain-containing protein	NA	NA	NA	NA
WP_003489220.1\|1797583_1798570_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_040237014.1\|1798979_1802636_+	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_003489223.1\|1803084_1803732_-	response regulator	NA	NA	NA	NA
WP_011051338.1\|1803970_1804717_-	sulfurtransferase	NA	NA	NA	NA
WP_011051337.1\|1804816_1805182_-	hypothetical protein	NA	NA	NA	NA
WP_003489230.1\|1805241_1805673_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_011051335.1\|1805683_1806946_+	TIGR03862 family flavoprotein	NA	NA	NA	NA
WP_011051334.1\|1806929_1808222_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA
WP_015471922.1\|1808531_1809275_+\|integrase	site-specific integrase	Q9T1P3	Pseudomonas_phage	1.0e-07	35.6
WP_087947478.1\|1810271_1811358_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.7e-43	37.2
1809276:1810202	attR	NA	NA	NA	NA
WP_058958684.1\|1817395_1822096_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	5.2e-81	25.4
WP_015471930.1\|1824778_1825702_-	hypothetical protein	NA	NA	NA	NA
WP_040150316.1\|1825701_1827822_-	hypothetical protein	NA	NA	NA	NA
WP_078516375.1\|1828417_1828747_+	DUF4879 domain-containing protein	I6NTM5	Burkholderia_phage	1.9e-22	60.7
WP_045714034.1\|1829357_1830368_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.8e-76	47.9
WP_015471936.1\|1831555_1832065_+	DUF3577 domain-containing protein	NA	NA	NA	NA
WP_015471937.1\|1832281_1833043_-	hypothetical protein	NA	NA	NA	NA
WP_015471938.1\|1833044_1834904_-	DUF1998 domain-containing protein	NA	NA	NA	NA
WP_015471939.1\|1834906_1838941_-	hypothetical protein	NA	NA	NA	NA
WP_015471940.1\|1839147_1843509_-	ATP phosphoribosyltransferase regulatory subunit	A0A1B1IUC6	uncultured_Mediterranean_phage	2.5e-53	26.8
WP_015471496.1\|1845594_1846377_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_015471495.1\|1846376_1847387_-\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_015471943.1\|1848735_1849782_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	2.7e-107	55.7
WP_015471944.1\|1849848_1850046_-	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.4e-17	54.8
WP_015471946.1\|1850892_1851075_-	Type IV secretory pathway, VirB10 component	NA	NA	NA	NA
WP_015471496.1\|1851577_1852360_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_015471495.1\|1852359_1853370_-\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9

DBSCAN-SWA_4

4829692 : 4837730

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005913455.1\|4829692_4831039_+	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	7.5e-33	27.1
WP_011052370.1\|4831086_4832490_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	6.5e-48	30.0
WP_011052371.1\|4832767_4833934_-	nucleotide sugar dehydrogenase	M1HZB2	Paramecium_bursaria_Chlorella_virus	8.0e-116	57.8
WP_005929612.1\|4834273_4835173_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.6e-26	36.3
WP_011052372.1\|4835169_4835727_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.6e-45	48.1
WP_005929617.1\|4835723_4836611_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.5e-95	57.8
WP_011052374.1\|4836674_4837730_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-83	47.7

DBSCAN-SWA_5

5040687 : 5104066

Stenotrophomonas_phage(55.0%)

tRNA,transposase,terminase,integrase,head,portal,plate,tail,holin,capsid

attL 5051359:5051376|attR 5089958:5089975

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015471495.1\|5040687_5041698_-\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_087943921.1\|5042348_5043492_+\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
WP_040149985.1\|5044388_5044706_-	hypothetical protein	NA	NA	NA	NA
WP_015472820.1\|5045142_5045622_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A218MND2	uncultured_virus	8.0e-14	36.9
WP_015472821.1\|5045621_5046908_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.7e-82	42.4
WP_015472824.1\|5047831_5048488_+	DUF1629 domain-containing protein	NA	NA	NA	NA
5051359:5051376	attL	NA	NA	NA	NA
WP_045714067.1\|5052448_5053189_+	hypothetical protein	NA	NA	NA	NA
WP_015472828.1\|5053223_5053934_-	site-specific DNA-methyltransferase	V9IQV5	Stenotrophomonas_phage	1.5e-104	75.7
WP_080633694.1\|5053851_5054097_-	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	2.4e-14	51.2
WP_015472829.1\|5054122_5055145_-\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	1.4e-140	71.8
WP_080633695.1\|5055144_5056929_-\|terminase	terminase ATPase subunit family protein	V9IQL5	Stenotrophomonas_phage	1.7e-271	77.2
WP_015472831.1\|5057050_5057893_+\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	2.4e-66	52.7
WP_015472832.1\|5057939_5058953_+\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	1.2e-136	70.7
WP_015472833.1\|5058956_5059676_+\|terminase	phage-related terminase	Q9ZXM2	Pseudomonas_virus	5.3e-70	63.6
WP_015472834.1\|5059774_5060242_+\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	1.8e-31	49.7
WP_005917735.1\|5060241_5060451_+\|tail	tail protein	K4PAW7	Burkholderia_phage	7.0e-15	59.4
WP_005917737.1\|5060455_5060812_+	membrane protein	V9IQG9	Stenotrophomonas_phage	5.9e-22	56.1
WP_015471780.1\|5060804_5061080_+\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	2.3e-21	59.8
WP_015472835.1\|5061079_5061718_+	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	6.4e-51	63.3
WP_015472836.1\|5061717_5062206_+	hypothetical protein	V9IQW8	Stenotrophomonas_phage	6.9e-29	53.1
WP_015472837.1\|5062202_5062622_+\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	2.2e-39	64.4
WP_015472838.1\|5062609_5063068_+	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	7.6e-38	55.6
WP_015472839.1\|5063096_5064314_-	hypothetical protein	NA	NA	NA	NA
WP_015472840.1\|5064566_5065457_+\|plate	phage-related baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	9.5e-85	54.1
WP_015472841.1\|5065449_5065995_+\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.4e-51	56.6
WP_015472842.1\|5066007_5067807_+	hypothetical protein	V9IQX0	Stenotrophomonas_phage	1.7e-80	38.1
WP_040152954.1\|5067879_5068173_+	hypothetical protein	NA	NA	NA	NA
WP_015472844.1\|5068175_5068850_+	hypothetical protein	NA	NA	NA	NA
WP_015472845.1\|5068992_5069556_+\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	9.7e-27	47.0
WP_015472846.1\|5069552_5069912_+\|plate	phage baseplate assembly protein W	V9IQW0	Stenotrophomonas_phage	1.2e-35	64.4
WP_015472847.1\|5069923_5071090_+\|tail	phage tail sheath protein FI	E5FFG9	Burkholderia_phage	2.1e-132	63.3
WP_015472848.1\|5071119_5071629_+\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	1.4e-72	79.3
WP_011038109.1\|5071674_5071977_+\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	3.7e-25	67.4
WP_005922203.1\|5071985_5072099_+\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	4.2e-06	68.6
WP_015472852.1\|5075018_5075420_+\|tail	phage tail protein	V9IQX3	Stenotrophomonas_phage	1.9e-37	59.1
WP_015472853.1\|5075416_5076403_+	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	7.7e-96	56.3
WP_015472855.1\|5077010_5077442_-	transcriptional regulator	E5E3P4	Burkholderia_phage	4.1e-09	33.1
WP_078516363.1\|5077527_5077776_+	hypothetical protein	NA	NA	NA	NA
WP_015472857.1\|5077778_5078099_+	hypothetical protein	V9IQW3	Stenotrophomonas_phage	7.4e-24	57.8
WP_015472858.1\|5078109_5078388_+	hypothetical protein	NA	NA	NA	NA
WP_015472859.1\|5078384_5078597_+	hypothetical protein	NA	NA	NA	NA
WP_015472860.1\|5078606_5081351_+	toprim domain-containing protein	V9IQW5	Stenotrophomonas_phage	0.0e+00	68.5
WP_015471496.1\|5081434_5082217_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	5.1e-74	55.3
WP_015471495.1\|5082216_5083227_-\|transposase	IS21-like element ISXci1 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-76	47.9
WP_015472861.1\|5083666_5083885_+	hypothetical protein	NA	NA	NA	NA
WP_015472862.1\|5083881_5084169_+	hypothetical protein	NA	NA	NA	NA
WP_015472863.1\|5084168_5084441_+	hypothetical protein	NA	NA	NA	NA
WP_015472864.1\|5084519_5084945_+	hypothetical protein	V9IQL6	Stenotrophomonas_phage	3.3e-19	47.4
WP_014091203.1\|5084937_5085120_+	hypothetical protein	NA	NA	NA	NA
WP_015472865.1\|5085112_5085385_+	hypothetical protein	NA	NA	NA	NA
WP_008572787.1\|5085381_5085606_+	hypothetical protein	NA	NA	NA	NA
WP_026006879.1\|5085602_5085875_+	hypothetical protein	NA	NA	NA	NA
WP_016849275.1\|5086077_5086302_+	hypothetical protein	V9IQX6	Stenotrophomonas_phage	3.4e-15	64.3
WP_015472867.1\|5086301_5087489_+\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	7.1e-112	52.1
WP_011052523.1\|5088126_5088447_-	hypothetical protein	NA	NA	NA	NA
WP_015472868.1\|5088639_5090517_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.4e-37	35.5
5089958:5089975	attR	NA	NA	NA	NA
WP_003484398.1\|5090625_5091066_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_015472869.1\|5091166_5092081_+	lauroyl acyltransferase	NA	NA	NA	NA
WP_003484403.1\|5092248_5092770_-	N-acetyltransferase	NA	NA	NA	NA
WP_011052524.1\|5093015_5094149_+	GTP cyclohydrolase II RibA	A0A2H4PQS2	Staphylococcus_phage	4.7e-28	40.9
WP_003484425.1\|5094287_5094764_+	PH domain-containing protein	NA	NA	NA	NA
WP_015472870.1\|5094760_5096266_+	PH domain-containing protein	NA	NA	NA	NA
WP_015472871.1\|5096550_5097606_-	glycosyl/glycerophosphate transferase	NA	NA	NA	NA
WP_015472872.1\|5097609_5098434_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_015472873.1\|5098617_5099895_-	O-antigen ligase family protein	NA	NA	NA	NA
WP_011052530.1\|5100060_5101782_-	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_011052531.1\|5101832_5103143_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_005921922.1\|5103142_5104066_-\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP009037.1|WP_005916019.1|1769747_1770026_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP009037.1|WP_011051337.1|1804816_1805182_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP009037.1|WP_015471930.1|1824778_1825702_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP009037.1|WP_015471950.1|1854741_1855002_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP009037.1|WP_005916019.1|1769747_1770026_-|hypothetical-protein

1769747_1770026_-

92 aa aa

NZ_CP009037.1|WP_011051337.1|1804816_1805182_-|hypothetical-protein

1804816_1805182_-

121 aa aa

1771381-1853370

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP009037_7	TypeI	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	1776104-1776074	0
NZ_CP009037_7	TypeI	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	1776104-1776071	0

1. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP009037 position: 1776104-1776074, mismatch: 0

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgc	Protospacer
*******************************

2. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP009037 position: 1776104-1776071, mismatch: 0

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgccga	Protospacer
**********************************

NZ_CP009037.1|WP_015471930.1|1824778_1825702_-|hypothetical-protein

1824778_1825702_-

307 aa aa

1771381-1853370

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP009037_7	TypeI	7.2\|5155090\|31\|NZ_CP009037\|PILER-CR	5155090-5155120	31	1776104-1776074	0
NZ_CP009037_7	TypeI	7.5\|5155090\|34\|NZ_CP009037\|CRISPRCasFinder,CRT	5155090-5155123	34	1776104-1776071	0

1. spacer 7.2|5155090|31|NZ_CP009037|PILER-CR matches to NZ_CP009037 position: 1776104-1776074, mismatch: 0

ctgttcaagctccgccgcctgatccgcttgc	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgc	Protospacer
*******************************

2. spacer 7.5|5155090|34|NZ_CP009037|CRISPRCasFinder,CRT matches to NZ_CP009037 position: 1776104-1776071, mismatch: 0

ctgttcaagctccgccgcctgatccgcttgccga	CRISPR spacer
ctgttcaagctccgccgcctgatccgcttgccga	Protospacer
**********************************

NZ_CP009037.1|WP_015471950.1|1854741_1855002_+|hypothetical-protein

1854741_1855002_+

86 aa aa

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009037

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information