CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_LN554850	Aliivibrio wodanis genome assembly AWOD1, plasmid : pAWOD72	0 crisprs	NA	0	0
NZ_LN554849	Aliivibrio wodanis genome assembly AWOD1, plasmid : pAWOD150	0 crisprs	NA	0	0
NZ_LN554851	Aliivibrio wodanis genome assembly AWOD1, plasmid : pAWOD19	0 crisprs	NA	0	0
NZ_LN554848	Aliivibrio wodanis genome assembly AWOD1, plasmid : pAWOD920	0 crisprs	NA	0	1
NZ_LN554847	Aliivibrio wodanis genome assembly AWOD1, chromosome : 2	1 crisprs	DEDDh,RT,cas3,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,csa3	18	4
NZ_LN554846	Aliivibrio wodanis genome assembly AWOD1, chromosome : 1	1 crisprs	DEDDh,cas3,RT,PD-DExK,DinG,WYL,csx1,csa3	11	5

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LN554847_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN554847_1

1058738-1061169

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR

40 spacers

cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL

The CRISPR arrays of NZ_LN554847_1

>merge|NZ_LN554847|1|1058738-1061169|CRISPRCasFinder,CRT,PILER-CR
TTAATATGCTGCCTGTACGGCAGTGAACACCATGGAATATTTGCGGCGTTTGCCTGGGGCTTTCTAAGCTGCCTATACGGCAGTGAACTTGTGTTTATATTTACACCATCAATAACGAAATTTCTAAGCTGCCTGTACGGCAGTGAACAGCTATACCTTTAACAGCTAAGGTGTGGTGTGTTTCTAAGCTGCCTGTACGGCAGTGAACATTTTTTGAATACCATTTACCCGGGCGGTGTTTTTCTAAGCTGCCTGTACGGCAGTGAACCTCTGTTATTTACTATAACGGTTCGAATAACTTTTCTAAGCTGCCTGTACGGCTGTGAACTAGAAGATATTGAAACCAATACACTTAAACTATTTCTAAGCTGCCTGTACGGCAGTGAACATCACTAAGAATGTGGGTCTTGCTGCTTCTGCTTTCTAAGCTGCCTGTACGGCAGTGAACATGTGGTCTAGCTTAGCTAGTCTTACTATGGATTTCTAAGCTGCCTGTGCGGCAGTGAACTTCAATTACTTGAGTAGCCATACTGATACAGTTTTCTAAGCTGCCTGTGCGGCAGTGAACCTTATCACTCTTCGTCAAATTTAAGGCATTCATTTCTAAGCTGCCTGTGCGGCAGTGAACAGCAAATGAGATTACGCGCTCTTTTGCTAATTTTTCTAAGCTGCCTGTGCGGCAGTGAACCTCTTTTAACTCTTTAGTTTGCTGCTTGATTTTTTCTAAGCTGCCTGTGCGGCAGTGAACCGATAAACTATAAAGAAAGTTTTAAATGTAAATTTCTAAGCTGCCTGTGCGGCAGTGAACACCTAGCCGCTCGAATGCTAATGACTCCCACATTTCTAAGCTGCCTGTGCGGCAGTGAACATGATCGCAGTTGCTAGAGGTAAGCGTAACGATTTCTAAGCTGCCTGTGCGGCAGTGAACCATCATAAGGCTGTCCTGGAGTTTGAGACGGTTTTCTAAGCTGCCTGTGCGGCAGTGAACAGGAGGTCGATTTAACAGATGATTGATGAACTTTTCTAAGCTGCCTGTGCGGCAGTGAACTTATATGATAGCTATGGTCTGGTGAGATAAGATTTCTAAGCTGCCTGTGCGGCAGTGAACCTCAACTTGCGTTTTCTCATCAACAAAACAAATTTCTAAGCTGCCTGTGCGGCAGTGAACATTTAGCGGTTGCCTGTTTTGCTTGAGCAAATTTTTCTAAGCTGCCTGTGCGGCAGTGAACAAACTATCTACGATTGGAACGATTGCCGCTACGTTTCTAAGCTGCCTGTGCGGCAGTGAACGAAACTTTAATTTTTTCTTGCTTGGATGAACTTTTCTAAGCTGCCTGTGCGGCAGTGAACTATTTAACTTCAATACCGCCAAACGTCAGTTGTTTCTAAGCTGCCTGTGCGGCAGTGAACATGCAACAGCTTCATAGCTTTTTCCGCCACCATTTCTAAGCTGCCTGTGCGGCAGTGAACAAATGAATAAAGAACTTTTAAGCGTAATTAAATTTCTAAGCTGCCTGTGCGGCAGTGAACTATTCAACGGTCAAGTTTCCCCCGCTTTTGATGTTTCTAAGCTGCCTGTGCGGCAGTGAACAAGAAATCATAACATCATCACAAACTTGAGTAATTTCTAAGCTGCCTGTGCGGCAGTGAACTTGCAAATGAAAATTTCGTAGTGGTTTCGTCCTTTCTAAGCTGCCTGTGCGGCAGTGAACAACCATCCGCAATCTCTCGACAGGTCTCTGGATTTCTAAGCTGCCTGTGCGGCAGTGAACAATAGATTGAATAATTCGTGAATCATCAAATGTTTCTAAGCTGCCTGTGCGGCAGTGAACATATAGAGGGATCATTAACTGGAATAGAAAACTTTCTAAGCTGCCTGTGCGGCAGTGAACGGTTCTGTGGCTTTGGGTATTCCTCAAGCTATTTTCTAAGCTGCCTGTGCGGCAGTGAACTATTAATCATATTATGAACCCAATCTAGTAAATTTCTAAGCTGCCTGTGCGGCAGTGAACCTCAAAAGCTACTGCACACCAGTTACACTGTCTTTCTAAGCTGCCTGTGCGGCAGTGAACTGTAACGCCCCCACACTATCCATAATTTAATATTTCTAAGCTGCCTGTGCGGCAGTGAACGATGAAAAAGGCGCAAAGAAGTACCGTTTTAATTTCTAAGCTGCCTGTGCGGCAGTGAACATTGCTCCTGATGGCTCTAAATGGGCTTGTGTTTTCTAAGCTGCCTGTGCGGCAGTGAACTTGTTCCTATTGACGGTTATATTGCTCCTGATTTTCTAAGCTGCCTGTGCGGCAGTGAACGCACCTAGGGTTATTTTAGGATTATACTTATTTTTCTAAGCTGCCTGTGCGGCAGTGAACTTGATAAGGGTTTTTTAACTAAACGTTCTGGGTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_LN554847|1|1|1058738-1061169|CRISPRCasFinder
TTAATATGCTGCCTGTACGGCAGTGAAC	ACCATGGAATATTTGCGGCGTTTGCCTGGGGC
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTGTGTTTATATTTACACCATCAATAACGAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGCTATACCTTTAACAGCTAAGGTGTGGTGTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTTTTGAATACCATTTACCCGGGCGGTGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTCTGTTATTTACTATAACGGTTCGAATAACT
TTTCTAAGCTGCCTGTACGGCTGTGAAC	TAGAAGATATTGAAACCAATACACTTAAACTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATCACTAAGAATGTGGGTCTTGCTGCTTCTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATGTGGTCTAGCTTAGCTAGTCTTACTATGGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTCAATTACTTGAGTAGCCATACTGATACAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTATCACTCTTCGTCAAATTTAAGGCATTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGCAAATGAGATTACGCGCTCTTTTGCTAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTCTTTTAACTCTTTAGTTTGCTGCTTGATTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGATAAACTATAAAGAAAGTTTTAAATGTAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCTAGCCGCTCGAATGCTAATGACTCCCACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGATCGCAGTTGCTAGAGGTAAGCGTAACGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CATCATAAGGCTGTCCTGGAGTTTGAGACGGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGGAGGTCGATTTAACAGATGATTGATGAACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTATATGATAGCTATGGTCTGGTGAGATAAGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTCAACTTGCGTTTTCTCATCAACAAAACAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTTAGCGGTTGCCTGTTTTGCTTGAGCAAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAACTATCTACGATTGGAACGATTGCCGCTACG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAACTTTAATTTTTTCTTGCTTGGATGAACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATTTAACTTCAATACCGCCAAACGTCAGTTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGCAACAGCTTCATAGCTTTTTCCGCCACCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAATGAATAAAGAACTTTTAAGCGTAATTAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATTCAACGGTCAAGTTTCCCCCGCTTTTGATG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGAAATCATAACATCATCACAAACTTGAGTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGCAAATGAAAATTTCGTAGTGGTTTCGTCC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACCATCCGCAATCTCTCGACAGGTCTCTGGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATAGATTGAATAATTCGTGAATCATCAAATG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATAGAGGGATCATTAACTGGAATAGAAAAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGTTCTGTGGCTTTGGGTATTCCTCAAGCTAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATTAATCATATTATGAACCCAATCTAGTAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTCAAAAGCTACTGCACACCAGTTACACTGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTAACGCCCCCACACTATCCATAATTTAATA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GATGAAAAAGGCGCAAAGAAGTACCGTTTTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTGCTCCTGATGGCTCTAAATGGGCTTGTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTTCCTATTGACGGTTATATTGCTCCTGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCACCTAGGGTTATTTTAGGATTATACTTATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGATAAGGGTTTTTTAACTAAACGTTCTGGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_LN554847|1|1|1058738-1061169|CRT
TTAATATGCTGCCTGTACGGCAGTGAAC	ACCATGGAATATTTGCGGCGTTTGCCTGGGGC
TTTCTAAGCTGCCTATACGGCAGTGAAC	TTGTGTTTATATTTACACCATCAATAACGAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGCTATACCTTTAACAGCTAAGGTGTGGTGTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTTTTGAATACCATTTACCCGGGCGGTGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTCTGTTATTTACTATAACGGTTCGAATAACT
TTTCTAAGCTGCCTGTACGGCTGTGAAC	TAGAAGATATTGAAACCAATACACTTAAACTA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATCACTAAGAATGTGGGTCTTGCTGCTTCTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATGTGGTCTAGCTTAGCTAGTCTTACTATGGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTCAATTACTTGAGTAGCCATACTGATACAGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTATCACTCTTCGTCAAATTTAAGGCATTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGCAAATGAGATTACGCGCTCTTTTGCTAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTCTTTTAACTCTTTAGTTTGCTGCTTGATTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGATAAACTATAAAGAAAGTTTTAAATGTAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCTAGCCGCTCGAATGCTAATGACTCCCACA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGATCGCAGTTGCTAGAGGTAAGCGTAACGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CATCATAAGGCTGTCCTGGAGTTTGAGACGGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGGAGGTCGATTTAACAGATGATTGATGAACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTATATGATAGCTATGGTCTGGTGAGATAAGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTCAACTTGCGTTTTCTCATCAACAAAACAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTTAGCGGTTGCCTGTTTTGCTTGAGCAAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAACTATCTACGATTGGAACGATTGCCGCTACG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAACTTTAATTTTTTCTTGCTTGGATGAACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATTTAACTTCAATACCGCCAAACGTCAGTTG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGCAACAGCTTCATAGCTTTTTCCGCCACCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAATGAATAAAGAACTTTTAAGCGTAATTAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATTCAACGGTCAAGTTTCCCCCGCTTTTGATG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGAAATCATAACATCATCACAAACTTGAGTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGCAAATGAAAATTTCGTAGTGGTTTCGTCC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AACCATCCGCAATCTCTCGACAGGTCTCTGGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATAGATTGAATAATTCGTGAATCATCAAATG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATATAGAGGGATCATTAACTGGAATAGAAAAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGTTCTGTGGCTTTGGGTATTCCTCAAGCTAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATTAATCATATTATGAACCCAATCTAGTAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTCAAAAGCTACTGCACACCAGTTACACTGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTAACGCCCCCACACTATCCATAATTTAATA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GATGAAAAAGGCGCAAAGAAGTACCGTTTTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTGCTCCTGATGGCTCTAAATGGGCTTGTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTTCCTATTGACGGTTATATTGCTCCTGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCACCTAGGGTTATTTTAGGATTATACTTATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGATAAGGGTTTTTTAACTAAACGTTCTGGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_LN554847|1|1|1060602-1061169|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGTTCTGTGGCTTTGGGTATTCCTCAAGCTAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TATTAATCATATTATGAACCCAATCTAGTAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTCAAAAGCTACTGCACACCAGTTACACTGTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTAACGCCCCCACACTATCCATAATTTAATA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GATGAAAAAGGCGCAAAGAAGTACCGTTTTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTGCTCCTGATGGCTCTAAATGGGCTTGTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTTCCTATTGACGGTTATATTGCTCCTGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCACCTAGGGTTATTTTAGGATTATACTTATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGATAAGGGTTTTTTAACTAAACGTTCTGGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN554847.1\|WP_099047791.1\|1053342_1053600_-\|YdcH-family-protein	unknown	unknown	gnl\|CDD\|377305
NZ_LN554847.1\|WP_045104157.1\|1063847_1065200_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_LN554847.1\|WP_045104156.1\|1062874_1063846_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_LN554847.1\|WP_045104149.1\|1054152_1054944_-\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NZ_LN554847.1\|WP_045104154.1\|1061307_1061859_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_LN554847.1\|WP_045104158.1\|1065208_1068619_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|187804
NZ_LN554847.1\|WP_045104147.1\|1052487_1053198_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_LN554847.1\|WP_045104151.1\|1055725_1056676_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226964
NZ_LN554847.1\|WP_011263647.1\|1070921_1071155_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LN554847.1\|WP_045104160.1\|1069644_1070640_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_LN554847.1\|WP_045104145.1\|1050854_1051751_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_LN554847.1\|WP_045104161.1\|1071435_1071795_-\|glutaredoxin	unknown	unknown	gnl\|CDD\|239339
NZ_LN554847.1\|WP_045104150.1\|1054955_1055717_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226963
NZ_LN554847.1\|WP_045104146.1\|1051836_1052382_-\|RNA-polymerase-sigma-factor-SigZ	unknown	unknown	gnl\|CDD\|236601
NZ_LN554847.1\|WP_045104148.1\|1053812_1054061_+\|DUF3297-family-protein	unknown	unknown	gnl\|CDD\|371696
NZ_LN554847.1\|WP_045104159.1\|1068615_1069611_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_LN554847.1\|WP_045104162.1\|1072098_1073595_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NZ_LN554847.1\|WP_045104153.1\|1057688_1058594_-\|siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226966
NZ_LN554847.1\|WP_045104155.1\|1061867_1062851_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_LN554847.1\|WP_045104152.1\|1056668_1057604_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226965

Protein	Function_ID	Function_description	E-value
NZ_LN554847.1\|WP_099047791.1\|1053342_1053600_-\|YdcH-family-protein	gnl\|CDD\|377305	pfam04325, DUF465, Protein of unknown function (DUF465). Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.	2.39132e-09
NZ_LN554847.1\|WP_045104157.1\|1063847_1065200_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	4.08001e-145
NZ_LN554847.1\|WP_045104156.1\|1062874_1063846_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	3.78255e-119
NZ_LN554847.1\|WP_045104149.1\|1054152_1054944_-\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	1.93669e-88
NZ_LN554847.1\|WP_045104154.1\|1061307_1061859_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.65205e-85
NZ_LN554847.1\|WP_045104158.1\|1065208_1068619_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_LN554847.1\|WP_045104147.1\|1052487_1053198_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	2.96927e-29
NZ_LN554847.1\|WP_045104151.1\|1055725_1056676_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	8.56991e-106
NZ_LN554847.1\|WP_045104160.1\|1069644_1070640_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	7.47072e-38
NZ_LN554847.1\|WP_045104145.1\|1050854_1051751_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.32317e-16
NZ_LN554847.1\|WP_045104161.1\|1071435_1071795_-\|glutaredoxin	gnl\|CDD\|239339	cd03041, GST_N_2GST_N, GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.	5.38693e-12
NZ_LN554847.1\|WP_045104150.1\|1054955_1055717_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	4.3328e-143
NZ_LN554847.1\|WP_045104146.1\|1051836_1052382_-\|RNA-polymerase-sigma-factor-SigZ	gnl\|CDD\|236601	PRK09637, PRK09637, RNA polymerase sigma factor SigZ; Provisional.	4.88243e-96
NZ_LN554847.1\|WP_045104148.1\|1053812_1054061_+\|DUF3297-family-protein	gnl\|CDD\|371696	pfam11730, DUF3297, Protein of unknown function (DUF3297). This family is expressed in Proteobacteria and Actinobacteria. The function is not known.	2.53492e-43
NZ_LN554847.1\|WP_045104159.1\|1068615_1069611_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	1.55378e-179
NZ_LN554847.1\|WP_045104162.1\|1072098_1073595_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_LN554847.1\|WP_045104153.1\|1057688_1058594_-\|siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226966	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism].	9.6483e-107
NZ_LN554847.1\|WP_045104155.1\|1061867_1062851_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_LN554847.1\|WP_045104152.1\|1056668_1057604_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.28655e-127

>NZ_LN554847.1|WP_045104153.1|1057688_1058594_-|siderophore-ABC-transporter-substrate-binding-protein
MKKSIATMLFGLLVSASSYAETITVSHQLGKTTLETKPQRVVVIGTGTLDAIDYFGIKPVAVTQATTMPPYLLKYKTKEFASSGSLNEPDFETIYMQKPDVIIIGSRAVKAYKELSEIAPTIVFTADSKSYWESTQQQWRMLGNVFEIQDKVEEKIASVDTEFKAIAEHNKTNNVAALTVMSAGGNITTFGAQSRFSAIYKDFGFNEAVEGIKESRHGDLVSYEFIRDVNPSNLLIVDKDKLINKDKSRTREEFANPLVKATDAYKNDSLTYLDINAWYLAIAGVTATDQMIADVKQSIHL
>NZ_LN554847.1|WP_045104152.1|1056668_1057604_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MKKLLLVLIVLSFASVFIGVADLPLSAIFRGDTEALELLVVSRLPRLLAILLSGAGLSIAGLIMQQISQNRFAAPSTSGTIECAMLGYVLSLVIFGHGDNLLLIFATAIGGTLLFIQFIHRIQFKNAIYVPLIGIIFGNVVSSAATFVAYKYDAVQNLSAWTVANFANILQGNYELLYIAVPMSVISYWYATRLSAVGMGKDFATNIGLKYKQILFLGIILVSVMSATVVMIVGQLPFLGLIVPNLVAQFYGDNLRRNIPLTAIVGAILILVCDVVGRVIIFPYEIPISMIISILGGMVFIFFIVKGKQNV
>NZ_LN554847.1|WP_045104151.1|1055725_1056676_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MSDSIKLTALAFITVLFTFLFIGIGLDASNYEYFLSRRVPKVLAMILASIAIAQSSLVFQTITHNRILTPSIMGFDALYLLTQVLVVVIFGSFSIFLLNPFVNFAMSVVIMVGFSLLLFGFYFKKNNSNVITLLLLGVIFGQLFYNVSSFFMMLVDPNDFASIQSSMFASFNNINKDLVYFCVIPLLLISAVLFRMSNVLDVFWLDNDNATSLGVDVGKITKQVLILVAILISVSTALVGPVMFFGLLVANLAKEFFNTYRHRTLLLGSSLMAMSMLLSGQWAIENIFKFETTLSVVINFIGGLYFLSLLVRQKIQ
>NZ_LN554847.1|WP_045104150.1|1054955_1055717_-|ATP-binding-cassette-domain-containing-protein
MISLSQLSKSFGQQKVVDQASASFIKGEVTSIIGPNGAGKSTVLSMASRLLAKDSGSVLIENQEVVDWDTKALAKKLAVLRQSNNLNMRFTVRELVAFGRFPYSQGKLTKHDNEVMDKAINYLDLAPIQNKYLDQLSGGQRQLAFIAMVVAQDTDYVFLDEPLNNLDIKHSLQIMKNIKTLAHELGKAVVIVIHDINFASCYSDNIVALKKGKVVANGTVAEVIRKDVLSEIYETEFDIHEVNGQRICMYYGQ
>NZ_LN554847.1|WP_045104149.1|1054152_1054944_-|siderophore-interacting-protein
MNKKPSPRVLTVVNNLQLTTNMQRITFKADDLSDFDMETEGGYIKLMFNENGGTDLSGIAEGTRPMMRTYTVRNLRKEQNQLDVDFVRHHHANTVMSAETGGFASAWAQNAVNGDTISIAGPGSIKGLNHNADWFFLVADMTALPALSTKLEALPATAVGYAVIEINHQSDKQTLIKPQGIELAWVIKSDPQGLTDTVREQEWKAGRVSVWSACEFNQMRALRTYFRNEKEVDKDDLYISSYWKEGCTEDGHKIAKHEDQLAS
>NZ_LN554847.1|WP_045104148.1|1053812_1054061_+|DUF3297-family-protein
MNDTTQKPALPDHLSGNPRSPHHVAECFEHHIGINLNGKERFDVEEYCISENWVKIPSPKALDRRGQPILIKLKGTVEAFYK
>NZ_LN554847.1|WP_099047791.1|1053342_1053600_-|YdcH-family-protein
MLNENHAFILDFPELKLDIVQLNHDDPKFKADLQQYHQLDYDIRQLEISGSPIDDENMNTLKHQRMELKDTLYKQLTKHHEQVAH
>NZ_LN554847.1|WP_045104147.1|1052487_1053198_-|glutathione-S-transferase-family-protein
MIKLISFKNCPFVQRVMGSLVTKNVPFEIEYIELNNKPQWFLDIAPNGQVPVLITENETVLFESDAIVEYLDDKYAPIEDLSAEQKALDRAWSYQASKHYMPQCGAMGSKDKETFETRLTNLSKAFAKAEGKLGESLFFKADYISNVDIAWLPLLHRAAVIKAQSGFDMLDGFPKVQKWQSALIESGLTEKTVPQDFVATFSGFYLKNTYLAHVMNGTEEECATGTCSTSSSSCCN
>NZ_LN554847.1|WP_045104146.1|1051836_1052382_-|RNA-polymerase-sigma-factor-SigZ
MKLEVIWSEYQSSLKAFLRSKVSNPEDVEDLLQEILIKTHRNLTTISDNQKVKSWLFQIANNTIIDFYRQNKKRTELTEDDLWFDEQNEEQIVKELSRCLLPFIKQLPDEDAELLSLIEIEGISQKEYAEKNGLKYSTLKSRVKKSREKLHGLFTTCCDFSIDSQGNLIEYKSKSDKCDRC
>NZ_LN554847.1|WP_045104145.1|1050854_1051751_+|DMT-family-transporter
MYYLLPLFTVLIWGGNSIINKMAASAIEPSAMSFYRWAFAMLILTPFCLPSVIKSRHVIRPYLSKLAFLALLGMVLNQSLGYYAGLTTTASNMSLITSLVPLISIFLSLPLLGKRISKLSIVGAVISLAGLTFMLGHGDITFFLHQPITEGDGLMVIAALSYATYCVLLKRWKMPITNWQLIYMQGLFTVAMLAPLWLTSDNLLPTESSIPLIMYASIAASILAPWMWVKAIDVIGAESSAMFMNLLPVVAVSLAAILLGEKIESYHLMGGLMVISGVILAQVKTKKAKQEASLLIKV
>NZ_LN554847.1|WP_045104154.1|1061307_1061859_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MKFYCDIKVLPDPEASEPVLISNLMAKLHRTLVELKGINIGISFPNVNKTLGDTLRLHGDEAALKQLFDLNWLKGLRDYCSQTSVLQVPEGCQYRCVKRKQAKSANNKRKRSIAKGWLSEEEATLKIGHEQQKMLRLPFVQLKSTSTGQVMKLFIDHGGLQDKAVEGQFNRYGLSSSATVPWF
>NZ_LN554847.1|WP_045104155.1|1061867_1062851_-|type-I-F-CRISPR-associated-protein-Csy3
MAKTTLKTPSVLAFEAKLLPSDALMFAGNWQQQEWTPIIVGEKAVRGTISNRLKAAMANDPTKLDAEVSKANLQTVDIAALDHQSDTLKVQFTLRVLSELQVPSTCNNPEYQAALAEKIETYKQEEGFTELAKRYAQNIANGRFLWRNRVGAENVLVKVSAEGKEFTFNSHDFNLRSFDNNPSVDELAEIIQKGLVENHSLIKVEAFTQLGEGQAVYPSQELVMGGGKGDKSKFLYQLNGQAAMHSQKIGNALRTIDTWHPAFEEVGPIAVEPYGSVTNRGAAYRQPKENNDFYKLLDGWMLKDKQPEKEQQHYIMAMLIRGGVFGE
>NZ_LN554847.1|WP_045104156.1|1062874_1063846_-|type-I-F-CRISPR-associated-protein-Csy2
MSRYLLLKDISVQNANAIAGLTYGFPAMTNFLGFAHALSRKLPSELTVSLGGVAVISHENIVHARQPKEWGDYVFALTRNPLTQKGTTAPINEEGRMNMTISLLIEVHGLLGGAIEQENSLVNSVKHHIPRLRIAGGQITQIGSISLTNKEEDTKVLRRLMPGFVLLDRSEYLAEHVKNKNEQGDQLSVFDAWCDFYKLKYQATRAESDAEDQDELSNKAKWEFVKKPQMGYLVPIMSGFCAISPLYDEGKVEKVRDTKVPVAFAEAAYGIGEWMSPHRLTSIDDAIWRYEHCEPWYVAKTNPFIDPIIELSMDELDEDDEEI
>NZ_LN554847.1|WP_045104157.1|1063847_1065200_-|type-I-F-CRISPR-associated-protein-Csy1
MDNTLSQAIADYIQQRKEAKLEPLQKVLNKVLDKSEDPVEIAEAQALYAEEAAPIKALFVAEVWLSDAAKRAKQTSLATHAAKFTHSDAKASSMLVTEQLNDSNYLVTASLNKKAIDAVGNAAALDVARLLKLECDGESLITQLQQGHINALCSFAKDENQLQEWKGGFEQALGDTKLSSHTLSKQLYFPLIGEDKVSVEYHLLCPLFSSSLAHELYHEVRRTRYGDSKEIRDARKSGKYHEKLDERFLNLAVQNFGGSKPQNISQLNNERHGETFLLNCAPPNWKYIASPPISSSSLFGRELSFKTATLICEFRLFLENLREDEKNVHIRRQRDNAYLLPIIDTVLNHVAVIQMMKDHAGWSNSDECKMKPNHALWLDVYNSDETFQKNREKGDWLTLIATDFANWLTHKLKSNKEKYILGDIEHAYFSKLFLHQLKHFERSTPKLGEL
>NZ_LN554847.1|WP_045104158.1|1065208_1068619_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKNALKKTRRVLDAFANRIGDNTWQTIITEDGLLTVKKMLRQTASKSTAVSCHWIRSRSRSQFLWVVGNRLKFNTEGVVPVNRTSLNLDHKEWENGWDKLEVIANATSIAGLFHDFGKANDLFQAKLQGTSGAKGEPYRHEWISLRLFEAFVKGKTDQEWLSELSEINRLDNGNRIESYVLDNLHNDHRSGSLSPFKSLSSFATLIAWLIVSHHRLPTPQTKRSKNVNNDQMPQWLTNVFNCDWNSSNAEQLDQIGSEVINKNWTFSQGTPFISKTWQKQASKLAYRTLKNTKLNHEQPWLKQRFVAHLSRLSLMLSDHYYSSLEAERSQLEWRDKDYLPKANTDRKETQLEGRAVFKQQLDEHNIGVSHNAMHFALNLPALKYALPAIGQHKLFSRNAPKKFVWQDKAYKAAKEYARLSEKQGFFGINMASTGCGKTIANARIMYALADEREGCRFSVAVGLRTLTLQTGDSYRDLLKLGDDELAVLIGSQAVKTLHQVNKESNKEKLSSGSESSDDFFEQLFISYDGQIYDGRLKHWLKGNPKLEQLLSAPVVVSTIDHLMPATESLRGGKQIAPMLRLLTSDLILDEPDDFGLEDLPALCRLVNWAGMLGSRVLLSSATLPPSLIAALYHAYLEGRKHFNAANFPENEIQSVVCGWFDENKSHVTEIKSSDAFTEENDIFVQKRIKKLNENKKVLRKGKLVTVHLDDELSEEKDDNHIYQSVAATIHSQIHQLHDSHHVKHSSGRKVSCGVVRMANIDPMINVMKCLSEMSPQEDYSIHFCVYHSQFPLAVRSHKENRLDNTLTRYDEAKLWQEPEVIEALNTTTTANNIFVVIGTSVVEVGRDHDYDWGIAEPSSLRALIQLAGRIQRHRQQEPSSSNLMVLNKNIRALRGDTTAYCKPGFESKDLPLSTHDLNELLNGELESISAISRIEQPKITKKEIKLSEGQAVAVGVNSFVMQEHRALKLALGLPKSPNKQGQKVAYYQSDKEALLWWKDNYHADWNGEFINQTRFRKSDPQEEFILCKADEWDDLGWHQKDTTQKKWVFTPQNHRVVTQSIELSEGNYWWMNTDVETIYINLAEQLEQTVESTGQYFGGISLRAAKEDQVLIWNWNDQLGVYQTKNH
>NZ_LN554847.1|WP_045104159.1|1068615_1069611_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDNFSSSDLKSILHSKRANLFYLEYCRVMQKDGRVLFLTEAKNENQYFNIPIANTTVLLLGNGTSITQAAMRMLAQAGVLVGFSGGGGTPLYMANDAEQPIEWFTPQSEYRPTEYLQGWMSFWFDDEKRLAAAKAFQQARLSFLQKIWARDRELKQEGFDLKESGLQAAFERFEERTEAATKQSDLLLTEAQLTKHLYKFAANNVQLQDFKRQHQSTDKANDFLNHGNYLAYGLAATTLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDTIVLPWAFICAKENDTEQEFRQQVLQAFTDHKVLDFMFDTVKEVALMHQKPKSLDGGDQTR
>NZ_LN554847.1|WP_045104160.1|1069644_1070640_-|WYL-domain-containing-protein
MEQLSRLSIIHKLLSQSKYPVPKNKLLEALECSESTFKRLIRKINDEFDASISYDRELKGYIYAPDSPQLPLSYLSFTDKEWFALLTAEKLFTDLHTGSLSKELEGIKQVLQQTKNRAMDFGIANKIEILSAIRTINHADVFNQITAALWAESSVDIEYQDSSQNITIRTLSPQKVFLYKDAWYLLAWCHLRTEIRIFSLNRLKSAKEGSAPFTALPEGSVQAYLKNSYGLMVGETQYQAVLRFEQSVAPWVLDHTWHSEQQIETQYNGDLILSFSFSDHRELVREIMRFQPNVTVVSPVFLKESVEQCLFQAVEKIQKDRTGSVCDLAVQ
>NZ_LN554847.1|WP_011263647.1|1070921_1071155_-|hypothetical-protein
MSMTHKWSIKNCPKDIESQVLSVIGLIDKKGSASDMDLCKIFGEVLWSDGKYFNSHAFRFLFDHETLSCEVTKRHLH
>NZ_LN554847.1|WP_045104161.1|1071435_1071795_-|glutaredoxin
MKLIRLVLGKIILAADFVFTPSGVKRDPAKQAEIDAETANYSLYQFEACPFCVKVRRTIKRQSLKIELRDAKNNEDHKAELLAGGGRVKVPCLRIDNNGETTWMYESSDIMAFLEKQYP
>NZ_LN554847.1|WP_045104162.1|1072098_1073595_-|sodium/proline-symporter-PutP
MIENNFAITGTFIAYLIMMLAIGLYAYKQTSSSSDYFLGGRTLGPWPAALSAGASDMSGWLLLGLPGYAYAAGLESLWLAGGLLVGTWLNWLICAKRLRTYSMTTDDALTLPEFLSRRFNDKSKLIQTISALFILLFFLFYTSSGLVAGGKLFETVFGLDYKIAVAIGTLCVVSYTLFGGFLAVAWTDLVQGLLMSAALMIVPIAAMQGGFGQLSADLVAINPELMTLWTGMDGKPLSAIAIISLAAWGLGYFGQPHILARFLASRTNRELTTARRIAVVWTALSMVGAVLVGLVGLLYVNGSMAGQAIDGEKIFMLLVNAMFHPVIAGILLAAILAAIMSTADSQLLVSSSALSEDLYKQLVKKDATSKEVVNVGRIAVIALSLIALALAMNPDSSVLGLVSYAWAGFGAAFGPAIVLSLYWKGMNRNGALAGIVVGGITIVVWKQLTGGWFDVYEIVPGIIFATTAIIAVSKLTGKPEEAVAQQHEKFERNLVEFE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LN554847_1	1.27\|1060329\|33\|NZ_LN554847\|CRISPRCasFinder,CRT	1060329-1060361	33	MN694517	Marine virus AFVG_250M306, complete genome	9644-9676	5	0.848
NZ_LN554847_1	1.8\|1059186\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059186-1059217	32	MN693627	Marine virus AFVG_250M592, complete genome	48677-48708	7	0.781
NZ_LN554847_1	1.19\|1059846\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059846-1059877	32	MH384260	Staphylococcus phage SA780ruMSSAST101, complete genome	21563-21594	7	0.781
NZ_LN554847_1	1.22\|1060028\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060028-1060059	32	MG209611	Aphanizomenon phage vB_AphaS-CL131, complete genome	17539-17570	7	0.781
NZ_LN554847_1	1.23\|1060088\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060088-1060119	32	KP007359	Enterobacteria phage vB_EcoM_VR5, complete genome	155439-155470	7	0.781
NZ_LN554847_1	1.6\|1059066\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059066-1059097	32	NZ_CP031118	Providencia sp. WCHPHu000369 strain WCHPr000369 plasmid p1_000369, complete sequence	25693-25724	8	0.75
NZ_LN554847_1	1.6\|1059066\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059066-1059097	32	NZ_CP025981	Escherichia marmotae strain HT073016 plasmid pEM76, complete sequence	37122-37153	8	0.75
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	KX349297	Cyanophage S-RIM44 isolate W2_10_0709, complete genome	64674-64705	8	0.75
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	KX349293	Cyanophage S-RIM44 isolate Np_20_0711, complete genome	62522-62553	8	0.75
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	KX349296	Cyanophage S-RIM44 isolate Sn_13_0910, complete genome	62564-62595	8	0.75
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	NC_047734	Cyanophage S-RIM44 isolate Np_42_0711, complete genome	62519-62550	8	0.75
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	KU594607	Cyanophage S-RIM44 isolate W2_07_0710, complete genome	64394-64425	8	0.75
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	KX349291	Cyanophage S-RIM44 isolate ES_42_0910, complete genome	62564-62595	8	0.75
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	NC_015288	Prochlorococcus phage Syn1, complete genome	62593-62624	8	0.75
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	KX349295	Cyanophage S-RIM44 isolate Sn_08_0709, complete genome	64397-64428	8	0.75
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	KX349292	Cyanophage S-RIM44 isolate Np_05_0604, complete genome	64397-64428	8	0.75
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	NZ_CP013780	Piscirickettsia salmonis strain PM51819A plasmid p2PS5, complete sequence	19144-19175	8	0.75
NZ_LN554847_1	1.14\|1059546\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059546-1059577	32	NC_019522	Pectobacterium phage ZF40, complete genome	22738-22769	8	0.75
NZ_LN554847_1	1.30\|1060510\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060510-1060541	32	NC_009819	Streptococcus phage P9, complete genome	1627-1658	8	0.75
NZ_LN554847_1	1.30\|1060510\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060510-1060541	32	NZ_CP009919	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_1, complete sequence	60010-60041	8	0.75
NZ_LN554847_1	1.30\|1060510\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060510-1060541	32	NZ_CP035096	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed2, complete sequence	49083-49114	8	0.75
NZ_LN554847_1	1.32\|1060630\|32\|NZ_LN554847\|CRISPRCasFinder,CRT,PILER-CR	1060630-1060661	32	NZ_CP049914	Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence	258265-258296	8	0.75
NZ_LN554847_1	1.38\|1060990\|32\|NZ_LN554847\|CRISPRCasFinder,CRT,PILER-CR	1060990-1061021	32	MN693076	Marine virus AFVG_25M561, complete genome	24808-24839	8	0.75
NZ_LN554847_1	1.38\|1060990\|32\|NZ_LN554847\|CRISPRCasFinder,CRT,PILER-CR	1060990-1061021	32	MN855784	Bacteriophage sp. isolate 47, complete genome	4394-4425	8	0.75
NZ_LN554847_1	1.40\|1061110\|32\|NZ_LN554847\|CRISPRCasFinder,CRT,PILER-CR	1061110-1061141	32	NZ_CP015355	Bacillus thuringiensis strain MYBT18246 plasmid p109822, complete sequence	2316-2347	8	0.75
NZ_LN554847_1	1.2\|1058826\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1058826-1058857	32	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	425481-425512	9	0.719
NZ_LN554847_1	1.6\|1059066\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059066-1059097	32	NZ_CP011038	Pseudoalteromonas nigrifaciens strain KMM 661 plasmid unnamed, complete sequence	41306-41337	9	0.719
NZ_LN554847_1	1.6\|1059066\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059066-1059097	32	MH617672	Microviridae sp. isolate ctbe519, complete genome	3673-3704	9	0.719
NZ_LN554847_1	1.12\|1059426\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059426-1059457	32	AP014939	Citrobacter freundii plasmid pKHM-1 DNA, complete sequence, strain: KHM 243	150309-150340	9	0.719
NZ_LN554847_1	1.12\|1059426\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059426-1059457	32	NZ_LN681228	Xenorhabdus nematophila AN6/1 plasmid II, complete sequence	129665-129696	9	0.719
NZ_LN554847_1	1.12\|1059426\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059426-1059457	32	NZ_AP018687	Vibrio rumoiensis strain FERM P-14531 plasmid 1, complete sequence	44042-44073	9	0.719
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	NZ_CP015630	Borrelia turicatae strain BTE5EL plasmid lp159	146558-146589	9	0.719
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	NZ_CP015630	Borrelia turicatae strain BTE5EL plasmid lp159	151095-151126	9	0.719
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	MT521992	Rhodococcus phage NiceHouse, complete genome	58053-58084	9	0.719
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	KU594606	Cyanophage S-RIM32 isolate RW_108_0702, complete genome	64936-64967	9	0.719
NZ_LN554847_1	1.16\|1059666\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059666-1059697	32	NC_007603	Enterobacteria phage RTP, complete genome	13327-13358	9	0.719
NZ_LN554847_1	1.16\|1059666\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059666-1059697	32	AM156909	Bacteriophage RTP, complete genome	13327-13358	9	0.719
NZ_LN554847_1	1.19\|1059846\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059846-1059877	32	LR597641	Escherichia phage mEp460_ev081 genome assembly, chromosome: 1	30692-30723	9	0.719
NZ_LN554847_1	1.22\|1060028\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060028-1060059	32	CP046513	Bacillus cereus strain JHU plasmid p2, complete sequence	179562-179593	9	0.719
NZ_LN554847_1	1.25\|1060208\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060208-1060239	32	NZ_CP031943	Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence	31556-31587	9	0.719
NZ_LN554847_1	1.25\|1060208\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060208-1060239	32	MN693082	Marine virus AFVG_25M510, complete genome	26680-26711	9	0.719
NZ_LN554847_1	1.25\|1060208\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060208-1060239	32	MN693228	Marine virus AFVG_25M509, complete genome	27303-27334	9	0.719
NZ_LN554847_1	1.28\|1060390\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060390-1060421	32	NC_028940	Pectobacterium bacteriophage PM2, complete genome	72-103	9	0.719
NZ_LN554847_1	1.30\|1060510\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060510-1060541	32	NZ_CP032534	Bacillus megaterium NCT-2 plasmid pNCT2_6, complete sequence	38163-38194	9	0.719
NZ_LN554847_1	1.30\|1060510\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060510-1060541	32	MK448729	Streptococcus phage Javan31, complete genome	1543-1574	9	0.719
NZ_LN554847_1	1.30\|1060510\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060510-1060541	32	MK448837	Streptococcus phage Javan10, complete genome	1543-1574	9	0.719
NZ_LN554847_1	1.30\|1060510\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060510-1060541	32	MK448691	Streptococcus phage Javan17, complete genome	1543-1574	9	0.719
NZ_LN554847_1	1.30\|1060510\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060510-1060541	32	MK448948	Streptococcus phage Javan46, complete genome	1543-1574	9	0.719
NZ_LN554847_1	1.30\|1060510\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060510-1060541	32	MK448768	Streptococcus phage Javan47, complete genome	1543-1574	9	0.719
NZ_LN554847_1	1.31\|1060570\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060570-1060601	32	NZ_AP018682	Vibrio casei strain DSM 22364 plasmid 1, complete sequence	15408-15439	9	0.719
NZ_LN554847_1	1.31\|1060570\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060570-1060601	32	NC_019749	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence	89732-89763	9	0.719
NZ_LN554847_1	1.12\|1059426\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059426-1059457	32	NC_018516	Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence	55194-55225	10	0.688
NZ_LN554847_1	1.12\|1059426\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059426-1059457	32	NZ_CP053970	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence	25652-25683	10	0.688
NZ_LN554847_1	1.12\|1059426\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059426-1059457	32	NZ_CP053979	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence	283466-283497	10	0.688
NZ_LN554847_1	1.12\|1059426\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059426-1059457	32	NZ_CP013277	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence	152186-152217	10	0.688
NZ_LN554847_1	1.12\|1059426\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059426-1059457	32	NZ_CP039723	Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence	269187-269218	10	0.688
NZ_LN554847_1	1.12\|1059426\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059426-1059457	32	NZ_CP009348	Bacillus thuringiensis HD1002 plasmid 2, complete sequence	152186-152217	10	0.688
NZ_LN554847_1	1.12\|1059426\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059426-1059457	32	NZ_CP009334	Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence	338991-339022	10	0.688
NZ_LN554847_1	1.12\|1059426\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059426-1059457	32	NZ_CP045024	Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence	151694-151725	10	0.688
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	NZ_CP028161	Lactococcus lactis subsp. lactis strain 14B4 plasmid p14B4, complete sequence	27530-27561	10	0.688
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	AP014289	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S24-C75, * SEQUENCING IN PROGRESS *	6092-6123	10	0.688
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	AP014107	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C35-MedDCM-OCT-S24-C120, * SEQUENCING IN PROGRESS *	11551-11582	10	0.688
NZ_LN554847_1	1.13\|1059486\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1059486-1059517	32	AP014112	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C35-MedDCM-OCT-S44-C161, * SEQUENCING IN PROGRESS *	4314-4345	10	0.688
NZ_LN554847_1	1.23\|1060088\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1060088-1060119	32	MN694453	Marine virus AFVG_250M327, complete genome	32998-33029	10	0.688
NZ_LN554847_1	1.2\|1058826\|32\|NZ_LN554847\|CRISPRCasFinder,CRT	1058826-1058857	32	MN693343	Marine virus AFVG_25M435, complete genome	17279-17310	11	0.656

1. spacer 1.27|1060329|33|NZ_LN554847|CRISPRCasFinder,CRT matches to MN694517 (Marine virus AFVG_250M306, complete genome) position: , mismatch: 5, identity: 0.848

aagaaatcataacatcatcacaaacttgagtaa	CRISPR spacer
cagaaatcataacatcatcacgaacctgatcaa	Protospacer
 ********************.***.*** .**

2. spacer 1.8|1059186|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MN693627 (Marine virus AFVG_250M592, complete genome) position: , mismatch: 7, identity: 0.781

atgtggtctagcttagctagtcttactatgga	CRISPR spacer
aggggtactagcttagctagtcttacaatgtc	Protospacer
* * *  ******************* ***

3. spacer 1.19|1059846|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MH384260 (Staphylococcus phage SA780ruMSSAST101, complete genome) position: , mismatch: 7, identity: 0.781

ctcaacttgcgttttctcatcaacaaaacaaa	CRISPR spacer
ttcagcttgtgttttctcatcaacaactcgta	Protospacer
.***.****.****************  *. *

4. spacer 1.22|1060028|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MG209611 (Aphanizomenon phage vB_AphaS-CL131, complete genome) position: , mismatch: 7, identity: 0.781

gaaactttaattttttcttgcttggatgaact	CRISPR spacer
aaaactttaattgtttcttccttggacaactt	Protospacer
.*********** ****** ******..* .*

5. spacer 1.23|1060088|32|NZ_LN554847|CRISPRCasFinder,CRT matches to KP007359 (Enterobacteria phage vB_EcoM_VR5, complete genome) position: , mismatch: 7, identity: 0.781

tatttaacttcaataccgccaaac--gtcagttg	CRISPR spacer
tatataacttcaataccggcaaacagaatagt--	Protospacer
*** ************** *****  . .***

6. spacer 1.6|1059066|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP031118 (Providencia sp. WCHPHu000369 strain WCHPr000369 plasmid p1_000369, complete sequence) position: , mismatch: 8, identity: 0.75

tagaagatattgaaaccaatacacttaaacta	CRISPR spacer
cattagatagtgaaaccaatacatttaatcct	Protospacer
.*  ***** *************.**** *.

7. spacer 1.6|1059066|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP025981 (Escherichia marmotae strain HT073016 plasmid pEM76, complete sequence) position: , mismatch: 8, identity: 0.75

tagaagatattgaaaccaatacacttaaacta	CRISPR spacer
taggagatattgtaaccaatacagatgcatca	Protospacer
***.******** **********  *. *..*

8. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to KX349297 (Cyanophage S-RIM44 isolate W2_10_0709, complete genome) position: , mismatch: 8, identity: 0.75

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
gtataaattataaggaaagttttaaaaatgga	Protospacer
  *****.*****.************ .*..*

9. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to KX349293 (Cyanophage S-RIM44 isolate Np_20_0711, complete genome) position: , mismatch: 8, identity: 0.75

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
gtataaattataaggaaagttttaaaaatgga	Protospacer
  *****.*****.************ .*..*

10. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to KX349296 (Cyanophage S-RIM44 isolate Sn_13_0910, complete genome) position: , mismatch: 8, identity: 0.75

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
gtataaattataaggaaagttttaaagatgga	Protospacer
  *****.*****.************ .*..*

11. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NC_047734 (Cyanophage S-RIM44 isolate Np_42_0711, complete genome) position: , mismatch: 8, identity: 0.75

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
gtataaattataaggaaagttttaaagatgga	Protospacer
  *****.*****.************ .*..*

12. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to KU594607 (Cyanophage S-RIM44 isolate W2_07_0710, complete genome) position: , mismatch: 8, identity: 0.75

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
gtataaattataaggaaagttttaaaaatgga	Protospacer
  *****.*****.************ .*..*

13. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to KX349291 (Cyanophage S-RIM44 isolate ES_42_0910, complete genome) position: , mismatch: 8, identity: 0.75

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
gtataaattataaggaaagttttaaaaatgga	Protospacer
  *****.*****.************ .*..*

14. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NC_015288 (Prochlorococcus phage Syn1, complete genome) position: , mismatch: 8, identity: 0.75

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
gtataaattataaggaaagttttaaaaatgga	Protospacer
  *****.*****.************ .*..*

15. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to KX349295 (Cyanophage S-RIM44 isolate Sn_08_0709, complete genome) position: , mismatch: 8, identity: 0.75

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
gtataaattataaggaaagttttaaaaatgga	Protospacer
  *****.*****.************ .*..*

16. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to KX349292 (Cyanophage S-RIM44 isolate Np_05_0604, complete genome) position: , mismatch: 8, identity: 0.75

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
gtataaattataaggaaagttttaaaaatgga	Protospacer
  *****.*****.************ .*..*

17. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP013780 (Piscirickettsia salmonis strain PM51819A plasmid p2PS5, complete sequence) position: , mismatch: 8, identity: 0.75

---cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
gttttttaa---ataaaaaaagttttaaatttaaa	Protospacer
   .  ***   *****.************ ****

18. spacer 1.14|1059546|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NC_019522 (Pectobacterium phage ZF40, complete genome) position: , mismatch: 8, identity: 0.75

acctagccgctcgaatgctaatgactcccaca	CRISPR spacer
gccttttttctcgaatgctgatgacgcccaca	Protospacer
.***  .. **********.***** ******

19. spacer 1.30|1060510|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NC_009819 (Streptococcus phage P9, complete genome) position: , mismatch: 8, identity: 0.75

aatagattgaataattcgtgaatcatcaaatg	CRISPR spacer
tgttttttcaataattcgtgaaccatcaaatt	Protospacer
 .*   ** *************.********

20. spacer 1.30|1060510|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP009919 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_1, complete sequence) position: , mismatch: 8, identity: 0.75

aatagattgaataattcgtgaatcatcaaatg	CRISPR spacer
agtgatgggaataatacgtgaatcatctaatg	Protospacer
*.*..   ******* *********** ****

21. spacer 1.30|1060510|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP035096 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

aatagattgaataattcgtgaatcatcaaatg	CRISPR spacer
agtgatgggaataatacgtgaatcatctaatg	Protospacer
*.*..   ******* *********** ****

22. spacer 1.32|1060630|32|NZ_LN554847|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggttctgtggctttgggtattcctcaagctat	CRISPR spacer
gctccggtggctttggggattgctcaagccgc	Protospacer
* *.* *********** *** *******...

23. spacer 1.38|1060990|32|NZ_LN554847|CRISPRCasFinder,CRT,PILER-CR matches to MN693076 (Marine virus AFVG_25M561, complete genome) position: , mismatch: 8, identity: 0.75

ttgttcctattgacggttatattgctcctgat	CRISPR spacer
actttgatgttgatggttacattgctcctgat	Protospacer
 . **  *.****.*****.************

24. spacer 1.38|1060990|32|NZ_LN554847|CRISPRCasFinder,CRT,PILER-CR matches to MN855784 (Bacteriophage sp. isolate 47, complete genome) position: , mismatch: 8, identity: 0.75

ttgttcctattgacggttatattgct---cctgat	CRISPR spacer
ccattcctattgtcggttacattgctggacct---	Protospacer
...********* ******.******   ***

25. spacer 1.40|1061110|32|NZ_LN554847|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015355 (Bacillus thuringiensis strain MYBT18246 plasmid p109822, complete sequence) position: , mismatch: 8, identity: 0.75

ttgataagggttttttaactaaacgttctggg	CRISPR spacer
tttataagggttttttcactaaatttcttgct	Protospacer
** ************* ******. *..**

26. spacer 1.2|1058826|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ttgtgtttatatttacaccatcaataacgaaa	CRISPR spacer
tcttgtttatctttacaccaccaataagtttc	Protospacer
*. ******* *********.******

27. spacer 1.6|1059066|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP011038 (Pseudoalteromonas nigrifaciens strain KMM 661 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

tagaagatattgaaaccaatacacttaaacta	CRISPR spacer
acctaagtattgaaaacaatacatttaaactt	Protospacer
    *..******** *******.*******

28. spacer 1.6|1059066|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MH617672 (Microviridae sp. isolate ctbe519, complete genome) position: , mismatch: 9, identity: 0.719

tagaagatattgaaaccaatacacttaaacta	CRISPR spacer
tagaagatataaaaaccaatacaaacggcata	Protospacer
********** .***********  ...  **

29. spacer 1.12|1059426|32|NZ_LN554847|CRISPRCasFinder,CRT matches to AP014939 (Citrobacter freundii plasmid pKHM-1 DNA, complete sequence, strain: KHM 243) position: , mismatch: 9, identity: 0.719

ctcttttaactctttagtttgctgcttgattt	CRISPR spacer
ctcttttaacgctttattttgctcgtgagctg	Protospacer
********** ***** ******  * ...*

30. spacer 1.12|1059426|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_LN681228 (Xenorhabdus nematophila AN6/1 plasmid II, complete sequence) position: , mismatch: 9, identity: 0.719

ctcttttaactctttagtttgctgcttgattt	CRISPR spacer
ctcttttaacgctttattttgctcgtgagctg	Protospacer
********** ***** ******  * ...*

31. spacer 1.12|1059426|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_AP018687 (Vibrio rumoiensis strain FERM P-14531 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

ctcttttaactctttagtttgctgcttgattt	CRISPR spacer
ctcttttaacgctttattttgctcgtgagctg	Protospacer
********** ***** ******  * ...*

32. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP015630 (Borrelia turicatae strain BTE5EL plasmid lp159) position: , mismatch: 9, identity: 0.719

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
atctaagctataaagaaagttataaaactcat	Protospacer
   ***.************** ****  * *

33. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP015630 (Borrelia turicatae strain BTE5EL plasmid lp159) position: , mismatch: 9, identity: 0.719

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
acctaaactataaagtaagttataaaattcat	Protospacer
   ************ ***** ****  * *

34. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MT521992 (Rhodococcus phage NiceHouse, complete genome) position: , mismatch: 9, identity: 0.719

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
taggatactaaacagaaagttttaaatgtcca	Protospacer
... * **** * ****************  *

35. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to KU594606 (Cyanophage S-RIM32 isolate RW_108_0702, complete genome) position: , mismatch: 9, identity: 0.719

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
gtgtaaattatagagaaagttttaaaaatgga	Protospacer
  .****.****.************* .*..*

36. spacer 1.16|1059666|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NC_007603 (Enterobacteria phage RTP, complete genome) position: , mismatch: 9, identity: 0.719

catcataaggctgtcctggagtttgagacggt	CRISPR spacer
ggtggtaaggctgccctggcgtttgagaagag	Protospacer
 .* .********.***** ******** *.

37. spacer 1.16|1059666|32|NZ_LN554847|CRISPRCasFinder,CRT matches to AM156909 (Bacteriophage RTP, complete genome) position: , mismatch: 9, identity: 0.719

catcataaggctgtcctggagtttgagacggt	CRISPR spacer
ggtggtaaggctgccctggcgtttgagaagag	Protospacer
 .* .********.***** ******** *.

38. spacer 1.19|1059846|32|NZ_LN554847|CRISPRCasFinder,CRT matches to LR597641 (Escherichia phage mEp460_ev081 genome assembly, chromosome: 1) position: , mismatch: 9, identity: 0.719

ctcaacttgcgttttctcatcaacaaaacaaa	CRISPR spacer
caatacttgagttttctcatcaaaaaaccttg	Protospacer
*   ***** ************* *** *  .

39. spacer 1.22|1060028|32|NZ_LN554847|CRISPRCasFinder,CRT matches to CP046513 (Bacillus cereus strain JHU plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

gaaactttaattttttcttgcttggatgaact	CRISPR spacer
aatcctttaattttttattacttggattcttt	Protospacer
.*  ************ **.*******   .*

40. spacer 1.25|1060208|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP031943 (Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

aaatgaataaagaacttttaagcgtaattaaa	CRISPR spacer
tcaccgaacaagaatttttgagcgtaattaaa	Protospacer
  *. .*  *****.****.************

41. spacer 1.25|1060208|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MN693082 (Marine virus AFVG_25M510, complete genome) position: , mismatch: 9, identity: 0.719

aaatgaataaagaacttttaagcgtaattaaa	CRISPR spacer
aaatgactgaagaacttttaagccgagaagat	Protospacer
****** *.**************  *.  .*

42. spacer 1.25|1060208|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MN693228 (Marine virus AFVG_25M509, complete genome) position: , mismatch: 9, identity: 0.719

aaatgaataaagaacttttaagcgtaattaaa	CRISPR spacer
aaatgactgaagaacttttaagccgagaagat	Protospacer
****** *.**************  *.  .*

43. spacer 1.28|1060390|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NC_028940 (Pectobacterium bacteriophage PM2, complete genome) position: , mismatch: 9, identity: 0.719

ttgcaaatgaaaatttcgtagtggtttcgtcc	CRISPR spacer
ttgaaaatgaaaatatcgtagtgtctaaatat	Protospacer
*** ********** ******** .*  .* .

44. spacer 1.30|1060510|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP032534 (Bacillus megaterium NCT-2 plasmid pNCT2_6, complete sequence) position: , mismatch: 9, identity: 0.719

aatagattgaataattcgtgaatcatcaaatg	CRISPR spacer
agagatgggaataatacgtgaatcatctaatg	Protospacer
*. ..   ******* *********** ****

45. spacer 1.30|1060510|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MK448729 (Streptococcus phage Javan31, complete genome) position: , mismatch: 9, identity: 0.719

aatagattgaataattcgtgaatcatcaaatg	CRISPR spacer
tgttttttcaataattcgtgaaccatcaaact	Protospacer
 .*   ** *************.*******.

46. spacer 1.30|1060510|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 9, identity: 0.719

aatagattgaataattcgtgaatcatcaaatg	CRISPR spacer
tgttttttcaataattcgtgaaccatcaaact	Protospacer
 .*   ** *************.*******.

47. spacer 1.30|1060510|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MK448691 (Streptococcus phage Javan17, complete genome) position: , mismatch: 9, identity: 0.719

aatagattgaataattcgtgaatcatcaaatg	CRISPR spacer
tgttttttcaataattcgtgaaccatcaaact	Protospacer
 .*   ** *************.*******.

48. spacer 1.30|1060510|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MK448948 (Streptococcus phage Javan46, complete genome) position: , mismatch: 9, identity: 0.719

aatagattgaataattcgtgaatcatcaaatg	CRISPR spacer
tgttttttcaataattcgtgaaccatcaaact	Protospacer
 .*   ** *************.*******.

49. spacer 1.30|1060510|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MK448768 (Streptococcus phage Javan47, complete genome) position: , mismatch: 9, identity: 0.719

aatagattgaataattcgtgaatcatcaaatg	CRISPR spacer
tgttttttcaataattcgtgaaccatcaaact	Protospacer
 .*   ** *************.*******.

50. spacer 1.31|1060570|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_AP018682 (Vibrio casei strain DSM 22364 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

atatagagggatcattaactggaatagaaaac	CRISPR spacer
ggcgattgtgatcattaactcgaataaaaaac	Protospacer
.   *  * *********** *****.*****

51. spacer 1.31|1060570|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NC_019749 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence) position: , mismatch: 9, identity: 0.719

atatagagggatcattaactggaatagaaaac	CRISPR spacer
atatagagggatcaaaaactggatattcactc	Protospacer
**************  *******     *  *

52. spacer 1.12|1059426|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NC_018516 (Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence) position: , mismatch: 10, identity: 0.688

ctcttttaactctttagtttgctgcttgattt	CRISPR spacer
cctcggcaactcttttgtttgctgctttatca	Protospacer
*...  .******** *********** **.

53. spacer 1.12|1059426|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP053970 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

ctcttttaactctttagtttgctgcttgattt	CRISPR spacer
cctcggcaactcttttgtttgctgctttatca	Protospacer
*...  .******** *********** **.

54. spacer 1.12|1059426|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP053979 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

ctcttttaactctttagtttgctgcttgattt	CRISPR spacer
cctcggcaactcttttgtttgctgctttatca	Protospacer
*...  .******** *********** **.

55. spacer 1.12|1059426|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP013277 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence) position: , mismatch: 10, identity: 0.688

ctcttttaactctttagtttgctgcttgattt	CRISPR spacer
cctcggcaactcttttgtttgctgctttatca	Protospacer
*...  .******** *********** **.

56. spacer 1.12|1059426|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP039723 (Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.688

ctcttttaactctttagtttgctgcttgattt	CRISPR spacer
cctcggcaactcttttgtttgctgctttatca	Protospacer
*...  .******** *********** **.

57. spacer 1.12|1059426|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP009348 (Bacillus thuringiensis HD1002 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

ctcttttaactctttagtttgctgcttgattt	CRISPR spacer
cctcggcaactcttttgtttgctgctttatca	Protospacer
*...  .******** *********** **.

58. spacer 1.12|1059426|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP009334 (Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

ctcttttaactctttagtttgctgcttgattt	CRISPR spacer
cctcggcaactcttttgtttgctgctttatca	Protospacer
*...  .******** *********** **.

59. spacer 1.12|1059426|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP045024 (Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.688

ctcttttaactctttagtttgctgcttgattt	CRISPR spacer
cctcggcaactcttttgtttgctgctttatca	Protospacer
*...  .******** *********** **.

60. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to NZ_CP028161 (Lactococcus lactis subsp. lactis strain 14B4 plasmid p14B4, complete sequence) position: , mismatch: 10, identity: 0.688

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
agataaaagataaagaaagttttagttacttg	Protospacer
 ******  ***************. *..  .

61. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to AP014289 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S24-C75, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
tctgatgttataaagaaatttttaaatataat	Protospacer
.   * ..********** ********.***

62. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to AP014107 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C35-MedDCM-OCT-S24-C120, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
aataaaattataaagaaagttgtaaattaact	Protospacer
 .  ***.************* *****  *

63. spacer 1.13|1059486|32|NZ_LN554847|CRISPRCasFinder,CRT matches to AP014112 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C35-MedDCM-OCT-S44-C161, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

cgataaactataaagaaagttttaaatgtaaa	CRISPR spacer
aataaaattataaagaaagttgtaaattaact	Protospacer
 .  ***.************* *****  *

64. spacer 1.23|1060088|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MN694453 (Marine virus AFVG_250M327, complete genome) position: , mismatch: 10, identity: 0.688

tatttaacttcaataccgccaaacgtcagttg	CRISPR spacer
tatttaactacaatacccccaaacaagcaaga	Protospacer
********* ******* ******.   .  .

65. spacer 1.2|1058826|32|NZ_LN554847|CRISPRCasFinder,CRT matches to MN693343 (Marine virus AFVG_25M435, complete genome) position: , mismatch: 11, identity: 0.656

ttgtgtttatatttacaccatcaataacgaaa	CRISPR spacer
agccatttatatttacattatcaataacagcc	Protospacer
   ..************..*********..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

580371 : 589355

Vibrio_phage(85.71%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045103779.1\|580371_580977_-	phage repressor protein CI	A0A2I7RNF9	Vibrio_phage	1.1e-39	41.9
WP_045103780.1\|581059_581281_+	hypothetical protein	NA	NA	NA	NA
WP_045103781.1\|581402_581924_+	phage regulatory protein (CII)	A0A2I7RNI1	Vibrio_phage	8.6e-46	53.0
WP_045103782.1\|581934_582255_+	hypothetical protein	U3PDF0	Vibrio_phage	6.7e-17	46.3
WP_045103783.1\|582336_582804_+	hypothetical protein	NA	NA	NA	NA
WP_099047782.1\|582800_582929_+	hypothetical protein	NA	NA	NA	NA
WP_045103784.1\|582931_583162_+	hypothetical protein	A0A2I7RNG5	Vibrio_phage	1.8e-19	56.6
WP_045103785.1\|583158_583434_+	hypothetical protein	NA	NA	NA	NA
WP_045103786.1\|583372_583654_-	hypothetical protein	NA	NA	NA	NA
WP_052662881.1\|583673_586175_+	replication endonuclease	A0A166YHE2	Vibrio_phage	4.7e-230	50.9
WP_045103787.1\|586184_586385_+	hypothetical protein	NA	NA	NA	NA
WP_045103788.1\|586469_586685_+	hypothetical protein	NA	NA	NA	NA
WP_045103789.1\|586704_586956_-	ogr/Delta-like zinc finger family protein	R9TNQ2	Vibrio_phage	6.0e-29	71.1
WP_045103790.1\|587170_587359_+	hypothetical protein	NA	NA	NA	NA
WP_045103791.1\|587602_587977_+	hypothetical protein	NA	NA	NA	NA
WP_045103792.1\|588022_588247_+	hypothetical protein	NA	NA	NA	NA
WP_045101017.1\|589010_589355_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.4e-20	48.6

DBSCAN-SWA_2

721568 : 771354

Leptospira_phage(30.0%)

integrase,transposase

attL 766093:766128|attR 774026:774061

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045103894.1\|721568_722483_-\|integrase	tyrosine-type recombinase/integrase	A0A077SLE7	Escherichia_phage	1.9e-11	22.9
WP_045103895.1\|722633_722984_+	DUF3319 domain-containing protein	NA	NA	NA	NA
WP_045103896.1\|723020_723332_+	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
WP_045103897.1\|723605_724406_-	hypothetical protein	NA	NA	NA	NA
WP_045103898.1\|724710_725277_+	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_045103899.1\|725424_726381_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJ76	Virus_Rctr85	1.8e-36	31.2
WP_045103900.1\|726686_728063_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_045103901.1\|728074_729631_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_045103902.1\|729888_730164_-	transcriptional regulator	NA	NA	NA	NA
WP_045103903.1\|730256_730814_-	OmpA family protein	NA	NA	NA	NA
WP_045103904.1\|730940_732050_-	ABC transporter permease	NA	NA	NA	NA
WP_045103905.1\|732053_733169_-	ABC transporter permease	NA	NA	NA	NA
WP_045103906.1\|733198_734179_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_045103907.1\|734183_735551_-	TolC family protein	NA	NA	NA	NA
WP_045103908.1\|735650_736112_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_045103909.1\|736579_736876_+	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_045103910.1\|736950_737157_-	cold-shock protein	Q9AZD3	Lactococcus_phage	7.1e-20	76.7
WP_045103911.1\|737350_737965_+	hypothetical protein	NA	NA	NA	NA
WP_045103912.1\|738012_738936_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	6.1e-10	23.2
WP_045103913.1\|738950_740054_-	acyltransferase	NA	NA	NA	NA
WP_045103914.1\|740234_740852_+	hypothetical protein	NA	NA	NA	NA
WP_045103915.1\|740888_741395_-	hypothetical protein	NA	NA	NA	NA
WP_045103916.1\|741397_741913_-	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA
WP_045103917.1\|742074_742905_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	3.4e-60	48.1
WP_045103918.1\|742895_743186_-	GIY-YIG nuclease family protein	W8W2G4	Invertebrate_iridovirus	2.2e-14	50.0
WP_045103919.1\|743190_743868_-	YceH family protein	NA	NA	NA	NA
WP_045103920.1\|744024_744435_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_045103921.1\|744542_744851_+	DUF496 family protein	NA	NA	NA	NA
WP_045103922.1\|744977_746285_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_045104545.1\|746335_746776_-	PAS domain-containing protein	NA	NA	NA	NA
WP_045103923.1\|746775_747780_-	response regulator	NA	NA	NA	NA
WP_045103924.1\|747906_748260_-	hypothetical protein	NA	NA	NA	NA
WP_045103925.1\|748598_749150_-	DUF3332 domain-containing protein	NA	NA	NA	NA
WP_045103926.1\|749452_750691_+	OFA family MFS transporter	NA	NA	NA	NA
WP_045103927.1\|750800_753155_+	fatty acid cis/trans isomerase	NA	NA	NA	NA
WP_045103928.1\|753219_753864_+	hypothetical protein	NA	NA	NA	NA
WP_045103929.1\|753860_754235_-	hypothetical protein	NA	NA	NA	NA
WP_045103930.1\|754405_755656_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_045103931.1\|755664_757644_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.7e-30	28.8
WP_045103932.1\|757810_759226_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_045103933.1\|759406_759640_-	hypothetical protein	NA	NA	NA	NA
WP_045103934.1\|759807_761454_+	ABC-ATPase domain-containing protein	NA	NA	NA	NA
WP_099047809.1\|761747_763088_+	YjiH family protein	NA	NA	NA	NA
WP_045101017.1\|764045_764390_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.4e-20	48.6
WP_045101016.1\|764475_765999_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	5.4e-80	39.3
766093:766128	attL	NA	NA	NA	NA
WP_045103936.1\|766124_766772_-	hypothetical protein	NA	NA	NA	NA
WP_045101724.1\|767112_768069_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_045103937.1\|768109_769579_-	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_045103938.1\|770466_771354_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	3.3e-29	32.8
774026:774061	attR	NA	NA	NA	NA

DBSCAN-SWA_3

791250 : 827864

Staphylococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045101000.1\|791250_792207_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.8e-44	38.1
WP_080889868.1\|792298_792553_-	hypothetical protein	NA	NA	NA	NA
WP_045103941.1\|792803_793025_+	hypothetical protein	NA	NA	NA	NA
WP_045103942.1\|793017_793308_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_045103961.1\|793430_794063_-	type B chloramphenicol O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	38.6
WP_045103962.1\|794803_795145_-	DUF1232 domain-containing protein	A0A2I7S9Z5	Vibrio_phage	3.7e-13	44.1
WP_045103963.1\|795361_796162_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_045103961.1\|796311_796944_-	type B chloramphenicol O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	38.6
WP_045103964.1\|797082_797526_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_045103941.1\|797760_797982_+	hypothetical protein	NA	NA	NA	NA
WP_045103942.1\|797974_798265_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_045103947.1\|798399_798864_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_045103965.1\|800200_801361_-	hypothetical protein	A0A1W6JNS5	Morganella_phage	1.1e-08	33.6
WP_045103966.1\|801527_801803_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_045103967.1\|801804_802149_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_045103968.1\|802324_802957_-	type B chloramphenicol O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	2.7e-25	37.5
WP_045103969.1\|803153_803402_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_012535033.1\|803391_803676_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	3.4e-20	53.2
WP_080889869.1\|803805_804402_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_045103971.1\|804506_805382_-	hypothetical protein	NA	NA	NA	NA
WP_045103972.1\|805528_806044_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_045103973.1\|806189_806669_-	membrane protein	NA	NA	NA	NA
WP_045101000.1\|807305_808262_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.8e-44	38.1
WP_045103941.1\|808555_808777_+	hypothetical protein	NA	NA	NA	NA
WP_045103942.1\|808769_809060_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_045101000.1\|809167_810124_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.8e-44	38.1
WP_045103948.1\|810250_810766_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_080889870.1\|810907_811867_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_045101000.1\|811974_812931_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.8e-44	38.1
WP_005422838.1\|813162_813537_-	VOC family protein	NA	NA	NA	NA
WP_045103975.1\|813691_814408_-	hypothetical protein	NA	NA	NA	NA
WP_045103976.1\|814569_815001_-	hypothetical protein	NA	NA	NA	NA
WP_045103977.1\|815282_815498_+	hypothetical protein	NA	NA	NA	NA
WP_045101000.1\|815834_816791_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.8e-44	38.1
WP_045103978.1\|816780_817311_-	hypothetical protein	NA	NA	NA	NA
WP_045103979.1\|817446_817977_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_045103980.1\|818130_818424_-	HigA family addiction module antidote protein	I6ZVM3	Aeromonas_phage	6.8e-16	46.2
WP_017023496.1\|818423_818702_-	addiction module killer protein	A0A2L1IV28	Escherichia_phage	6.7e-29	60.9
WP_045103981.1\|818896_819301_-	GFA family protein	NA	NA	NA	NA
WP_045103982.1\|819441_820068_-	hypothetical protein	NA	NA	NA	NA
WP_045103983.1\|820203_821199_-	DUF2806 domain-containing protein	NA	NA	NA	NA
WP_080889871.1\|823053_823269_+	hypothetical protein	NA	NA	NA	NA
WP_017020412.1\|823518_823776_-	hypothetical protein	NA	NA	NA	NA
WP_045103984.1\|824020_824485_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_045103985.1\|824649_825162_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A0G2Y3R2	Acanthamoeba_polyphaga_mimivirus	5.7e-18	41.9
WP_045103986.1\|825325_826246_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_045101016.1\|826340_827864_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	5.4e-80	39.3

DBSCAN-SWA_4

1399750 : 1434985

Mycobacterium_phage(20.0%)

protease,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045104404.1\|1399750_1400368_+\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_045104405.1\|1400436_1400763_-	DUF413 domain-containing protein	NA	NA	NA	NA
WP_099047800.1\|1400884_1401754_+	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA
WP_045104406.1\|1402008_1403355_+	magnesium transporter	NA	NA	NA	NA
WP_080889897.1\|1405165_1405327_+	hypothetical protein	NA	NA	NA	NA
WP_045104407.1\|1405354_1406281_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_045104408.1\|1406442_1407630_+	MFS transporter	NA	NA	NA	NA
WP_045104409.1\|1407906_1408575_+	SDR family oxidoreductase	B5U431	Mycobacterium_phage	3.3e-05	25.4
WP_045104410.1\|1408652_1409768_+	alkene reductase	NA	NA	NA	NA
WP_045104411.1\|1409764_1410544_+	glycine/betaine ABC transporter	NA	NA	NA	NA
WP_045104412.1\|1411504_1412992_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	7.3e-207	77.1
WP_045104413.1\|1413505_1414381_-	DMT family transporter	NA	NA	NA	NA
WP_045104414.1\|1414469_1414844_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_045104415.1\|1414959_1415826_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_045104416.1\|1415964_1416357_+	lipoprotein	NA	NA	NA	NA
WP_045104417.1\|1416440_1418303_-	PhoX family phosphatase	NA	NA	NA	NA
WP_045104418.1\|1418567_1418747_+	hypothetical protein	NA	NA	NA	NA
WP_045104419.1\|1419007_1419619_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_045104420.1\|1419642_1421103_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_045104421.1\|1421162_1422863_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	1.4e-57	31.1
WP_045104422.1\|1422940_1423882_+\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_045104423.1\|1423927_1424770_+\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_045104424.1\|1424772_1425960_+\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.6e-26	35.1
WP_045104425.1\|1426156_1426630_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_045104426.1\|1428007_1429714_+	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
WP_045104427.1\|1430011_1430869_+	kinase	NA	NA	NA	NA
WP_045104429.1\|1431711_1432797_-	AI-2E family transporter	NA	NA	NA	NA
WP_045104430.1\|1432816_1433713_-	drug/metabolite DMT transporter permease	NA	NA	NA	NA
WP_045101000.1\|1434028_1434985_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.8e-44	38.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LN554848

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

42808 : 83597

Salmonella_phage(30.77%)

integrase,transposase

attL 40206:40221|attR 52501:52516

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
40206:40221	attL	NA	NA	NA	NA
WP_052662931.1\|42808_44341_-\|integrase	site-specific integrase	Q9T1P3	Pseudomonas_phage	1.1e-08	28.2
WP_045104637.1\|44337_45453_-\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	8.4e-22	27.2
WP_045104638.1\|45925_46225_-	hypothetical protein	NA	NA	NA	NA
WP_045104639.1\|46300_46537_-	hypothetical protein	NA	NA	NA	NA
WP_045104640.1\|46563_46950_-	hypothetical protein	W6B383	Vibrio_phage	1.0e-11	36.6
WP_045104641.1\|46970_47246_-	hypothetical protein	NA	NA	NA	NA
WP_045104642.1\|49991_50141_+	Hok/Gef family protein	NA	NA	NA	NA
WP_012548929.1\|50231_50486_-	hypothetical protein	NA	NA	NA	NA
WP_045104643.1\|50622_51306_+	hypothetical protein	NA	NA	NA	NA
WP_045104644.1\|51661_52177_-	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_099047817.1\|52143_52326_-	hypothetical protein	NA	NA	NA	NA
WP_045104645.1\|52334_52694_-	hypothetical protein	NA	NA	NA	NA
52501:52516	attR	NA	NA	NA	NA
WP_045104646.1\|52874_53825_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_045104647.1\|53982_54447_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_045104648.1\|54612_54915_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017020975.1\|54919_55264_-	hypothetical protein	NA	NA	NA	NA
WP_052662932.1\|55470_56244_-	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	3.8e-05	27.3
WP_045104684.1\|60244_61513_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_045104650.1\|61758_62097_-	hypothetical protein	NA	NA	NA	NA
WP_045104651.1\|62124_63480_-	hypothetical protein	NA	NA	NA	NA
WP_052662933.1\|63555_63957_-	toxin-activating lysine-acyltransferase	NA	NA	NA	NA
WP_080889906.1\|65053_65740_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.2e-33	40.2
WP_012552308.1\|66041_66671_-	recombinase family protein	NA	NA	NA	NA
WP_045104652.1\|66943_68101_+	hypothetical protein	NA	NA	NA	NA
WP_045104653.1\|68413_68926_+	superoxide dismutase family protein	Q9MC02	Salmonella_phage	9.4e-45	49.4
WP_045104654.1\|69287_70226_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.3e-68	53.5
WP_045104655.1\|70637_71465_+	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	8.1e-06	29.7
WP_045104657.1\|72654_73197_-	porin family protein	NA	NA	NA	NA
WP_045104659.1\|74793_75567_+	phospholipase A	NA	NA	NA	NA
WP_045104661.1\|76524_76884_+	hypothetical protein	A0A2P1JQX9	Mycobacterium_phage	1.7e-08	33.3
WP_045104662.1\|76848_77151_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_045104663.1\|77153_77501_-	hypothetical protein	NA	NA	NA	NA
WP_045104664.1\|78279_79086_+	hypothetical protein	NA	NA	NA	NA
WP_045104665.1\|79082_79382_+	hypothetical protein	NA	NA	NA	NA
WP_080889906.1\|79618_80305_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.2e-33	40.2
WP_045104666.1\|80512_81718_+	AAA family ATPase	A0A240F4U1	Ochrobactrum_phage	2.5e-16	24.0
WP_045104667.1\|81710_82784_+	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	1.5e-47	42.0
WP_080889906.1\|82910_83597_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.2e-33	40.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_LN554846

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_LN554846_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN554846_1

1600416-1601944

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT

25 spacers

The CRISPR arrays of NZ_LN554846_1

>merge|NZ_LN554846|1|1600416-1601944|PILER-CR,CRISPRCasFinder,CRT
TTTTTAAGCTGCCTGTGCGGCAGTGAACTAACAGTAAGCAAACGTGGATCTTTTCCTTTCTTTCTAAGCTGCCTGTGCGGCAGTGAACTTGGTATTATTATTCGTGAATTTCCGCAAAATTTTCTAAGCTGCCTGTGCGGCAGTGAACCGAGGGGACAGAGATCCCGCCTGAATGCAGACTTTCTAAGCTGCCTGTGCGGCAGTGAACCTTGAGCAACTTGGATTTCTTTTGATTTGTCATTTCTAAGCTGCCTGTGCGGCAGTGAACGCCGACAAAGCTATTAAATCCATGTTTATGATTTTCTAAGCTGCCTGTGCGGCAGTGAACTGTTTGTTCATTCTATTTCACCATTTTAATTATTTCTAAGCTGCCTGTGCGGCAGTGAACGAAAATCCAAGGGACAGCCTACGTATTTTTTATTTCTAAGCTGCCTGTGCGGCAGTGAACAGCGACTTGATGGTGTAGCATTAAATCCATTATTTCTAAGCTGCCTGTGCGGCAGTGAACAATCAGCGTAATCGACTGGAAAAGTGTCTACTTTTCTAAGCTGCCTGTGCGGCAGTGAACAATCTGTGTTGATGAGTGTCATCGCTTGGATTTTTCTAAGCTGCCTGTGCGGCAGTGAACGTTGGTCTGGTTTACCCCCGTAATACTAGACGTTTCTAAGCTGCCTGTGCGGCAGTGAACCGCCGAAGTTCAACACGTCGTCGCAGAAGAAATTTCTAAGCTGCCTGTGCGGCAGTGAACTTCTGTATGAGCAATTAAAATGTTATCGCAAGTTTCTAAGCTGCCTGTGCGGCAGTGAACGCGGAGGTGTTGGTGGGTCAAACGGTTCAATTTTTCTAAGCTGCCTGTGCGGCAGTGAACTTGTTATGACTTTCCGACCTTTCTCCAAAGCATTTCTAAGCTGCCTGTGCGGCAGTGAACGGAAGTGAATTAGAACTCGCGTTCCTTCTTGTTTTCTAAGCTGCCTGTGCGGCAGTGAACATACAGTCGGAGAAGTTAAGATTCTTGCGTATTTTCTAAGCTGCCTGTGCGGCAGTGAACTAATAATGTTTTTTGTTGGATCTTCTGGCAATTTTCTAAGCTGCCTGTGCGGCAGTGAACTGATTGGTCTTGCTGCGATTGGTTTCGGTATCTTTCTAAGCTGCCTGTGCGGCAGTGAACATGACACTGTTCACTTTCAGATTAATGGGACTTTTCTAAGCTGCCTGTGCGGCAGTGAACTTTGGTTTGAATTACTTCCTGCTTTGCGTGAGTTTCTAAGCTGCCTGTGCGGCAGTGAACTTTGTCGCCAGTTTTAGATCCTTTTTGACAGGTTTCTAAGCTGCCTGTGCGGCAGTGAACGTACTGCATCAATGACACCCGAATCATCATAATTTCTAAGCTGCCTGTGCGGCAGTGAACGGTAATCCCTCACGTTTCATAGCGTCAAATAATTTTCTAAGCTGCCTGTGCGGCAGTGAACTGAGCAAGACTAACACCAGCTAAATCAGCAGATTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_LN554846|1|1|1600416-1601944|PILER-CR
TTTTTAAGCTGCCTGTGCGGCAGTGAAC	TAACAGTAAGCAAACGTGGATCTTTTCCTTTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGGTATTATTATTCGTGAATTTCCGCAAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGAGGGGACAGAGATCCCGCCTGAATGCAGAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTGAGCAACTTGGATTTCTTTTGATTTGTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCCGACAAAGCTATTAAATCCATGTTTATGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTTTGTTCATTCTATTTCACCATTTTAATTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAATCCAAGGGACAGCCTACGTATTTTTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGCGACTTGATGGTGTAGCATTAAATCCATTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATCAGCGTAATCGACTGGAAAAGTGTCTACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATCTGTGTTGATGAGTGTCATCGCTTGGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTGGTCTGGTTTACCCCCGTAATACTAGACG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGCCGAAGTTCAACACGTCGTCGCAGAAGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTCTGTATGAGCAATTAAAATGTTATCGCAAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCGGAGGTGTTGGTGGGTCAAACGGTTCAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTTATGACTTTCCGACCTTTCTCCAAAGCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGAAGTGAATTAGAACTCGCGTTCCTTCTTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATACAGTCGGAGAAGTTAAGATTCTTGCGTAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAATAATGTTTTTTGTTGGATCTTCTGGCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGATTGGTCTTGCTGCGATTGGTTTCGGTATC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGACACTGTTCACTTTCAGATTAATGGGACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTGGTTTGAATTACTTCCTGCTTTGCGTGAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTGTCGCCAGTTTTAGATCCTTTTTGACAGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTACTGCATCAATGACACCCGAATCATCATAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGTAATCCCTCACGTTTCATAGCGTCAAATAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGAGCAAGACTAACACCAGCTAAATCAGCAGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_LN554846|1|1|1600416-1601944|CRISPRCasFinder
TTTTTAAGCTGCCTGTGCGGCAGTGAAC	TAACAGTAAGCAAACGTGGATCTTTTCCTTTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGGTATTATTATTCGTGAATTTCCGCAAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGAGGGGACAGAGATCCCGCCTGAATGCAGAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTGAGCAACTTGGATTTCTTTTGATTTGTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCCGACAAAGCTATTAAATCCATGTTTATGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTTTGTTCATTCTATTTCACCATTTTAATTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAATCCAAGGGACAGCCTACGTATTTTTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGCGACTTGATGGTGTAGCATTAAATCCATTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATCAGCGTAATCGACTGGAAAAGTGTCTACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATCTGTGTTGATGAGTGTCATCGCTTGGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTGGTCTGGTTTACCCCCGTAATACTAGACG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGCCGAAGTTCAACACGTCGTCGCAGAAGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTCTGTATGAGCAATTAAAATGTTATCGCAAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCGGAGGTGTTGGTGGGTCAAACGGTTCAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTTATGACTTTCCGACCTTTCTCCAAAGCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGAAGTGAATTAGAACTCGCGTTCCTTCTTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATACAGTCGGAGAAGTTAAGATTCTTGCGTAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAATAATGTTTTTTGTTGGATCTTCTGGCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGATTGGTCTTGCTGCGATTGGTTTCGGTATC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGACACTGTTCACTTTCAGATTAATGGGACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTGGTTTGAATTACTTCCTGCTTTGCGTGAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTGTCGCCAGTTTTAGATCCTTTTTGACAGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTACTGCATCAATGACACCCGAATCATCATAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGTAATCCCTCACGTTTCATAGCGTCAAATAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGAGCAAGACTAACACCAGCTAAATCAGCAGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_LN554846|1|1|1600416-1601944|CRT
TTTTTAAGCTGCCTGTGCGGCAGTGAAC	TAACAGTAAGCAAACGTGGATCTTTTCCTTTC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGGTATTATTATTCGTGAATTTCCGCAAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGAGGGGACAGAGATCCCGCCTGAATGCAGAC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CTTGAGCAACTTGGATTTCTTTTGATTTGTCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCCGACAAAGCTATTAAATCCATGTTTATGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTTTGTTCATTCTATTTCACCATTTTAATTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GAAAATCCAAGGGACAGCCTACGTATTTTTTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AGCGACTTGATGGTGTAGCATTAAATCCATTA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATCAGCGTAATCGACTGGAAAAGTGTCTACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AATCTGTGTTGATGAGTGTCATCGCTTGGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTGGTCTGGTTTACCCCCGTAATACTAGACG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGCCGAAGTTCAACACGTCGTCGCAGAAGAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTCTGTATGAGCAATTAAAATGTTATCGCAAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GCGGAGGTGTTGGTGGGTCAAACGGTTCAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTTATGACTTTCCGACCTTTCTCCAAAGCA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGAAGTGAATTAGAACTCGCGTTCCTTCTTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATACAGTCGGAGAAGTTAAGATTCTTGCGTAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TAATAATGTTTTTTGTTGGATCTTCTGGCAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGATTGGTCTTGCTGCGATTGGTTTCGGTATC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGACACTGTTCACTTTCAGATTAATGGGACT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTGGTTTGAATTACTTCCTGCTTTGCGTGAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTTGTCGCCAGTTTTAGATCCTTTTTGACAGG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTACTGCATCAATGACACCCGAATCATCATAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GGTAATCCCTCACGTTTCATAGCGTCAAATAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGAGCAAGACTAACACCAGCTAAATCAGCAGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN554846.1\|WP_045102113.1\|1596908_1598594_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_LN554846.1\|WP_045102118.1\|1604387_1604798_-\|acyl-CoA-thioester-hydrolase-YciA	unknown	unknown	gnl\|CDD\|236736
NZ_LN554846.1\|WP_080889794.1\|1585991_1588022_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_LN554846.1\|WP_045102109.1\|1591026_1591593_-\|elongation-factor-P-like-protein-YeiP	unknown	unknown	gnl\|CDD\|179863
NZ_LN554846.1\|WP_045102117.1\|1603578_1604139_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183252
NZ_LN554846.1\|WP_045102110.1\|1591656_1593675_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_LN554846.1\|WP_080889795.1\|1593772_1595797_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_LN554846.1\|WP_045102123.1\|1608231_1608966_-\|nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350167
NZ_LN554846.1\|WP_045102112.1\|1595934_1596816_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_LN554846.1\|WP_045102115.1\|1602159_1602846_-\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_LN554846.1\|WP_045102122.1\|1607417_1608101_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_LN554846.1\|WP_045102120.1\|1605840_1606272_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_LN554846.1\|WP_045102124.1\|1608962_1609697_-\|nicotinamide-riboside-transporter-PnuC	unknown	unknown	gnl\|CDD\|185295
NZ_LN554846.1\|WP_045102106.1\|1583791_1585999_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_LN554846.1\|WP_045102108.1\|1589791_1590967_+\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|377697
NZ_LN554846.1\|WP_045102121.1\|1606523_1607282_+\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|368291
NZ_LN554846.1\|WP_045102107.1\|1588283_1589705_+\|16S-rRNA-(cytosine(1407)-C(5))-methyltransferase-RsmF	unknown	unknown	gnl\|CDD\|183387
NZ_LN554846.1\|WP_080889796.1\|1598723_1600382_-\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_LN554846.1\|WP_045102119.1\|1604923_1605730_+\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|181008
NZ_LN554846.1\|WP_045102116.1\|1602848_1603424_-\|glutaredoxin	unknown	unknown	gnl\|CDD\|239017

Protein	Function_ID	Function_description	E-value
NZ_LN554846.1\|WP_045102113.1\|1596908_1598594_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	8.09857e-73
NZ_LN554846.1\|WP_045102118.1\|1604387_1604798_-\|acyl-CoA-thioester-hydrolase-YciA	gnl\|CDD\|236736	PRK10694, PRK10694, acyl-CoA thioester hydrolase YciA.	1.30295e-66
NZ_LN554846.1\|WP_080889794.1\|1585991_1588022_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.78744e-32
NZ_LN554846.1\|WP_045102109.1\|1591026_1591593_-\|elongation-factor-P-like-protein-YeiP	gnl\|CDD\|179863	PRK04542, PRK04542, elongation factor P; Provisional.	3.18152e-127
NZ_LN554846.1\|WP_045102117.1\|1603578_1604139_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|183252	PRK11640, PRK11640, putative transcriptional regulator; Provisional.	5.32404e-12
NZ_LN554846.1\|WP_045102110.1\|1591656_1593675_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.54849e-49
NZ_LN554846.1\|WP_080889795.1\|1593772_1595797_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	8.90909e-45
NZ_LN554846.1\|WP_045102123.1\|1608231_1608966_-\|nucleoside-phosphorylase	gnl\|CDD\|350167	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases. Uridine phosphorylase (UP) is specific for pyrimidines, and is involved in pyrimidine salvage and in the maintenance of uridine homeostasis. In addition to E. coli Udp, this subfamily includes Shewanella oneidensis MR-1 UP and Plasmodium falciparum purine nucleoside phosphorylase (PfPNP). PfPNP is an outlier in terms of genetic distance from the other families of PNPs. PfPNP is catalytically active for inosine and guanosine, and in addition, has a weak UP activity. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	1.87693e-106
NZ_LN554846.1\|WP_045102112.1\|1595934_1596816_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	4.44769e-09
NZ_LN554846.1\|WP_045102115.1\|1602159_1602846_-\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	3.01471e-27
NZ_LN554846.1\|WP_045102122.1\|1607417_1608101_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	3.08581e-13
NZ_LN554846.1\|WP_045102120.1\|1605840_1606272_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	2.77091e-10
NZ_LN554846.1\|WP_045102124.1\|1608962_1609697_-\|nicotinamide-riboside-transporter-PnuC	gnl\|CDD\|185295	PRK15397, PRK15397, nicotinamide riboside transporter PnuC; Provisional.	1.8944e-145
NZ_LN554846.1\|WP_045102106.1\|1583791_1585999_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.24683e-90
NZ_LN554846.1\|WP_045102108.1\|1589791_1590967_+\|threonine/serine-exporter-family-protein	gnl\|CDD\|377697	pfam06738, ThrE, Putative threonine/serine exporter. ThrE is a family of bacterial and Archaeal proteins that catalyze the export of L-threonine from the cell. UniProtKB:Q79VD1 has been characterized as being necessary for this export. The domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent efflux of threonine and serine.	1.09789e-23
NZ_LN554846.1\|WP_045102121.1\|1606523_1607282_+\|HAD-IIB-family-hydrolase	gnl\|CDD\|368291	pfam05116, S6PP, Sucrose-6F-phosphate phosphohydrolase. This family consists of Sucrose-6F-phosphate phosphohydrolase proteins found in plants and cyanobacteria. Sucrose-6(F)-phosphate phosphohydrolase catalyzes the final step in the pathway of sucrose biosynthesis.	6.35026e-53
NZ_LN554846.1\|WP_045102107.1\|1588283_1589705_+\|16S-rRNA-(cytosine(1407)-C(5))-methyltransferase-RsmF	gnl\|CDD\|183387	PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.	0
NZ_LN554846.1\|WP_080889796.1\|1598723_1600382_-\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.71834e-48
NZ_LN554846.1\|WP_045102119.1\|1604923_1605730_+\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|181008	PRK07509, PRK07509, crotonase/enoyl-CoA hydratase family protein.	5.8609e-117
NZ_LN554846.1\|WP_045102116.1\|1602848_1603424_-\|glutaredoxin	gnl\|CDD\|239017	cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family.	6.65228e-20

>NZ_LN554846.1|WP_080889796.1|1598723_1600382_-|sensor-domain-containing-diguanylate-cyclase
MPIFLPMLQPLLIFCYIIPYNVLMIFIRLSVMSYVVRPVLNSKYALPIVVFIIGLILTLFAASHVVKDNRKQAYQETVNYSERHANRIKTQIQQDVFFLGALASLVDENSDYWINQFDSVSQHIMSGSSSMISIQWSPHVNLTQIEEHRNKIKSHYEGFTEFNFHEGAEKRFTKLLDRGFPLYMVSQVYPETGANSSILGYYSVSDRFEDTLLKMKTTQQPFLSDRVFLLQDSYNRKISEVERQKKQNGLLMYYPVFNQNKSQLIGYFISAIQIDAFFEKYLTLDAVKSRGYRIKVFDHGPSGSDDPVLYQSKAWVELGETIEVSQLIDIYGRPWEIQYQKSVLRTFSFTSNAIITLICGVFISLLIACIVRFSLHSKEALKRKLAKRTKELQYLVEHDTLTGVHNRYALCNHFEILIEQQIRFSLIAIDVDKFKHINDTYGHCAGDTALKYVAERVKAVISSEDMLARMGGDEFSILTRVTDKNQLTDMCDKICKAVNVKPIILKDIAIPITISIGAKRCHTTNIDDLYHEVDQEMYKSKNKGRNDFSIAV
>NZ_LN554846.1|WP_045102113.1|1596908_1598594_-|methyl-accepting-chemotaxis-protein
MNKLPMKVKFFLIAIIPMLLVLIVSLSITVSLQKDALEQEVNNYQDVLLSERKKQLKDNVLVGKAVVEDIITKHGVTEKSKTLALEALVNARFGEAGSGYFFVFDGSGTYVVHAEKRSMIGKSGMGLTDPNGVKIVVGLQNAARNGGGFVPYVYEKPGSSSPQPKISYSSPINGSKWFIGTGVYIDDINTSVANYREDAQQRLRHQIKLVLLWSIGLLIMTIVVMNYVAYKVTAPLRSMLSTFEDIANGEGDLTHRVNAEGKDEIAKLGQAFDLFVSKLHGIMSEVSATTGQVSQAATTINQQTEHLKSQLEEHNQETEQVVTAVTEMSSTAHEVAQNANQVSNATSDANKDAKEAQDKVTISTESINSLEMNVEKTSHHMGSLHDQSQKINGVLQVIGEIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQGSTHEIKVMLDELHQFVQQAVSSMNESQATCGLVVSSSSDISSGLNAVSNAVESINDMTAHIATAATEQSSVTEEINRNLVSIRTIVSSLVESSYDSSKVANELTDAGNQLQQLVKQFKL
>NZ_LN554846.1|WP_045102112.1|1595934_1596816_-|sulfite-exporter-TauE/SafE-family-protein
MTILFLLQASLVVGGLLFLYMLISLWRRKRESEKNTNVIAIGLIGGFANFCDTLGVGSFAIKTAGYKQFKLLDDKDLPGTMNAQATMATVFQALIFLTAVNVDLTTLLSLIVSACVGATVGARLVSNFDRQLIRLIMTGALFIVALLMFAGQFHLFPLGGDALGLTGEKLTIAIIGNFIFGALMTVGIGLYAPCMTMIYLLGMNPLAAFPIMMCSCAFLCFFSSGNFIKKEALNSRAALVVAITGSIGVFIAAFIVKSLDVEMLSWLVSFVVLYTAITMFRSWQQGRERTVTN
>NZ_LN554846.1|WP_080889795.1|1593772_1595797_-|GGDEF-domain-containing-protein
MGCKWMRMKSLNNIKIITIFIVVSVVTFFLILRPFQIEKPKPIATEAVPVFMPDHQLLMLPYGSRVLALRDLSRSDAKRAAMMLNLMDEKGIFGRESIYRVYYFMVLGNIALHKGDDNKARYYAQQLKEFAKNNNMIWVEADSLVELAIEHLKKGEIEKGINKAEYAIELAKGINYEYLLIKAYNTIGAAYNIKSQYSKALYYFHQGVKLAESYPEHIYNSKLISNLALIYIHLQEWDKALVNIDKAKELYNISMLNELSVLGILDINASYVYFNLENAKQARKYYDMAKKEITTSDSVRLNALLLKALSELYWLENNYKEALVTANRCINYDGINTAPLQKGLCLKIKAKVDLEYKNIDDAIESLVEATNIFTVIESKVYLNEVYELLSIAYEEKGFPILALDYYKLYSKGNERILFDRRQSEVFHLEEEFNTEQIQKNMKLIKTQNELNNLYVEKQQLRTRIVSTIVILVALGLFKLVRHNFSIVREKEALLEQSTKDALTDLNNRHYYESAIQQLDQNKAFYRDKHFTVAIIDIDHFKRVNDTYGHDVGDKVLINIASYMQSIIAEPDVLVRWGGEEFVCLFMTSGNNDCEIRLNRLRVAISQLAIAISDKETLTITVSIGALQNLMIDDVIHRNTESLRLADQYLYQAKEEGRNKVIIFSHGVDEQKKWH
>NZ_LN554846.1|WP_045102110.1|1591656_1593675_-|GGDEF-domain-containing-protein
MKTNNNLKKISLFICVSVAIFFYILRPFQLIEPKPEKKAAEKRFLPDDLLKNLPYSVDILNARDISYRDAAMALEKVSQLDAKGVFNHGAIYRTYYFLILRNIALLEGDRDKINYYNVELSLLAKNHEFPWLKAELIIDAGIELLKKGKMDEGIVLIEKAIMLSKSVNYNYLLVKAYNTLGVAYNIQSQYVKALEYYHLGIKLGRDYPSHSYNSKLIANLGLIYIYLEEWDKALDYIDRSSYLYTQSKIIDGVSIVINNVNLSYIYFNLGDAEKTRIYYDKGANQLDSTEDVRIVGLMRKTEADTLWIEDRYKESLAVANRCLQLPEIETVPQQHGLCLIAKSRTEIYFGNIEIAIKSLELALERLESINNASYVIKTYQLLAEAYEQSGNTELAYKYFKLYAKLDKDILFDRRQSEVYHLEEQFNTKQIKKNMELTNTQSELKTLYVEKQKLRTRVVASILILVGFGLFFLIRRNFTIEKEKEVLVEQSTTDALTGLNNRHYYNHALKELELNKALHEKKVFTAAVLDIDHFKAVNDTYGHDIGDAVLQNVAARLTAVIDDSDILVRWGGEEFVCLLPESKFYGCEVKLERLRMAISQLPISIDHIQKDLIVTISIGAIKNLTIDDVLYINKESLQLADVCLYRAKQEGRNRVVFESKEQLNRDKIQLCST
>NZ_LN554846.1|WP_045102109.1|1591026_1591593_-|elongation-factor-P-like-protein-YeiP
MPKASDIKKGSAIELNGKVFFIKEISKLTPSGRAGASLYRMRMYDVATGLKADESFKADEVISLADFSRRSATFSYIDGNEYVFMDAEDYTPYSFNKEAIEEELLFITEETQGLQVLIVNEAPVAIELPSSVDLEIVETDPSIKGASASARTKPATLTTGLTVQVPEYIANGEKIKINTSEHKFMSRA
>NZ_LN554846.1|WP_045102108.1|1589791_1590967_+|threonine/serine-exporter-family-protein
MPSQYRINRIVDIGDTLHRCGCAPYKVERYTMFYANKHGVNCMIQATPTAINYQFPDDNNAVILKRHKPASIDLGLLANTIIRLQQPLSETPPPPAEGVHFPTWVVALANILIPPAFLMLVGSTYEALWVSFLLGFVVWACQAVCTKRRSLAVEFFSAVIVTLIVTFIASLGIPIPVLALCIAAIVLFVPGLSIANALECLAFNDLVSGTSLLGQCFLTLIKLFIGIIIGLHVGEALWGVPEYTDYQNEFPIWLQIIGLPIISFSIGVMFKARPKDMIYSLPVAVLGMWGPFYLGFDGGWVVGTWVTTVLITLYGTWIAKKLNLTGIIFIMQGIIILVPGSRVLVSASQSVFEASILPIPSIGLSALFMFSAIVAGQVTAYSIYSPKIERD
>NZ_LN554846.1|WP_045102107.1|1588283_1589705_+|16S-rRNA-(cytosine(1407)-C(5))-methyltransferase-RsmF
MHDNIFLPEAFLTQVQETMPSHLSMEEFIAACKRPLRRSIRVNTLKNSVEEFKQRADEKQWKLEPVPWCDTGFWLTRPETDTVKLGSTAEHMSGLFYIQEASSMMPVTALLKDNDNIEMALDMASAPGSKTTQLAAGMKNQGALVANEFSSSRVKVLCSNVQRCGVSNVALTHFDGRVFGGWLPETFDSILLDAPCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIESAFHALKPGGVMVYSTCTLNHQENQNICHHLVEQFGDAVTFEPLGDLFENAEKALTQEGFLHIYPQIFDSEGFFVAKIRKNSATVPPEVKKRLGKFPFTPASSKEAKDIETELNATLQLSIPEANELWIRDKEVWAFPKRMKPLIGEMRYHRIGFKLAETHKKGYRWQHEAIMALAEANNPTACELTIEQAREWYMGRDVRPETVDKGETIVTYCGAVIGLGKWVGNRIKNGLPRELVRDGNLF
>NZ_LN554846.1|WP_080889794.1|1585991_1588022_-|HAMP-domain-containing-histidine-kinase
MKRQSISSRINLILGFISIVILIFSFTVIYLSSKINTATEQVADYDLPEALNSLAMLEELGDMNSNLLEYLLGEEEEQQEYFNNYAELVRFRNLIPKDIKEQNTLERVVRLVEGHKQKAISQVFEVYFPSKERRAAKQIDDLLKNVGMPLEALLDQMKEEEISDVGSTNNPQDVINDDLPGVRFYLELTDEAGDMLADLNRFVLADASAKREFFANALQFETYLAQLKPLEQKPQEIIHINEIERLFNELKAGGTNIFEHYQTQNKISATKAIDDLEHQIFNEAEKILDNLSGNARKEAIKSMDDLSRISSNISLILLVSTLLIISLVVSMIVITRRTIFNPLAEVTMTIERLRRGERDFELTSFNRNDELTDILSNLQLFQTELAELDELRSNEQKIQSELLVERDNATQSFQQLQETQTKLIATEKMASLGTLVAGVAHEVNTPLGVSVTMASTLTSNLTDFLEEVKSGVLNRSKLETFEVESMRSLELLENSLQHAAQLIHSFKQVAVDQTSNKRREFNLYETLNEIAQTLHHKIKRTNIKYSIKGSKDITLDSFPGPLGQVITNLFNNAMLHGFEGKDSGEIQIRFDLIGNEVKLLFSDNGNGVEDKNIKKLFDPFFTTKLGRGGSGLGLNIVHSIVTNLMGGEISVESRIGTTFELKLPLITPQQKENTYE
>NZ_LN554846.1|WP_045102106.1|1583791_1585999_-|EAL-domain-containing-protein
MSDFILNLVDDISEKEEKTEHCWKIAIIDDESSVHDVTKLALSNTKIQSKNLEFISAYSGQEGFELLKNNPDCAVVLLDVVMEESDSGLLLTQRIRKELKQTNLQIILRTGQPGYAPEEDIISKYEINDYKTKSELTRDKLLTSLSTAIRSYNHLQALEESKEGLKNVINASSELMKERSINEFAKGVLQQINALFHLSSQGIFCVSQRPLKGPNDFEDKKNNAFLVVATTQGYNSMYGKDIYEYSNDTASGIAQKALTIKSHVLEKNFSALYLSTPSQWQGVVVIEGGLNLSDVDEELLQVFCLNIALGLENAKFFSHLNRSAYYDSVTDLYNRGGLVQFSNTIEKQAKDTISLYVIDIDYFHDITDSLGFDFGNNVLVAMSSILKRIFHKQAMIARLHSDVFAVLVADSQLSLKSLVHACSRPFVLNENSMRLGVSLGEAHVAIKEEFNIELLFRHAKMALKVAKESKRGMAQAFEPQFEKDTESRRTVLAEFRHAMMKEELFLMLQPKVSMSTGAVVGYEALIRWQHPEKGVIPPNAFIPIVEQAGLYFDLDMYVFRSAVNIIKKYPQINKPISVNISANSLHHHDFIEDIKTVIKEENADITNIELEITENALVRKDMAIQHLNGLKEIGFVLCMDDFGAGYSSLAYLIKLPLDVIKIDRAFISNITEDKDSLVLLKGMLQICNDLNKKVVLEGVETQEQIDILKHYDVDVIQGFFYFRPQPIEEILKKAL
>NZ_LN554846.1|WP_045102115.1|1602159_1602846_-|TVP38/TMEM64-family-protein
MNKKLIVLMALLVSFAIVYFNFGHLLTLEQIKGFHQTLQSDIQENLFFYSAAYFIAYVVVTALSIPGAAVVTLLGAALFGFWWSLLLVSFASTIGATIAFLSSRYLLREWVDSKFKDKLVPINQGVEKDGAFYLLTLRLIPIFPFFLINLLMGLTKITAGRFYLFSQLGMLPGTMVYLNAGTQLSEITSLSGLVSPQILGSLALLGLFPIIIKFVINTIQKNRGQLKE
>NZ_LN554846.1|WP_045102116.1|1602848_1603424_-|glutaredoxin
MKPIKITLYRWAGSWGPFKVNIPCGECTLTTDILQDTFETELAGIPIELEVKDWLSNWWEPLKLKAWHAPIIIVEDKVISEGEALNRGVLIQAVIAKVAEREQIKGNVVFGKATCPFCVKAKAALDAAGIEYIYHDVVKDSAALYRMIPEVKAIIGEKTPVTVPQIWLDGKYVGGFDDLTKTMNTDVKAGS
>NZ_LN554846.1|WP_045102117.1|1603578_1604139_-|TetR-family-transcriptional-regulator
MKEDKRINALQKTIELCALHGFHGTSMDKITAATGLSKATIYKYFQSKENLITSALGLFSEQSLTNVKILFENTELTLEEKIAQRFKGLAGCIDVESFNGCYFQLAYSEYSNEDQGITEVSLQYKQHTQKLLIELLNRHHIDNAELRAKKAGLIFNGLLASLQLTKDPTLIELAHQMFLETIIKSE
>NZ_LN554846.1|WP_045102118.1|1604387_1604798_-|acyl-CoA-thioester-hydrolase-YciA
MRNSVKTDQVPKGQLLLRTLSMPADTNANGDIFGGWIMSQLDLAGAILAQEISGGRIVTVSVSSITFKKPVKVGDVVCCYGECTKVGRTSMSIDLEVWVKPIKEDEVSHRFQVCEATFNYVAIDSEGKPRPIPKNS
>NZ_LN554846.1|WP_045102119.1|1604923_1605730_+|crotonase/enoyl-CoA-hydratase-family-protein
MSYHHIHVEQQNTIMIIRLQRPEKLNAVNYPMFDELIHVSRQIEKDRTIRSVILTGSGGNFSSGLDFASIMKKKSHAMKLLFKLWPGNANKAQKVSANWRNLSVPVIVAIEGYCWGAGLQIALGGDFRIASPKANLSIMESKMGLTSDMAGSLTLREIMPKDQAMRISMCASQLDAETALKYGLITEVNDDPLEAAIQLSQQFARTSPDAIAATKHIYNRYWTAPKWKLLAYETYSQIRILIGRNFVQVQYALKKKASPLFKVRQRFW
>NZ_LN554846.1|WP_045102120.1|1605840_1606272_-|LysM-peptidoglycan-binding-domain-containing-protein
MKQKKNIILLASLMSSLVLTGCASNDEQITQQKSQIEQINTLESKVSTLESQVNTLETELQKQKSTDSEIYQTVHRLDVAQNKLKEQAQQQADEAIMYYMIKQGDTLYSIARDHGIALEDIIQLNPHIVNPKRLLIGDLLNVK
>NZ_LN554846.1|WP_045102121.1|1606523_1607282_+|HAD-IIB-family-hydrolase
MIKMLVCDFDGTINGGSSLGVDQFSAYLNTQPELHFIIATGRTLPSIQEGLTTHNYPKPRCIISDIGTRINYEYDLIADERWQHQLQDKWNKSAIQTALQDITFLGECNPSYQGDYKITFEGKLDHKQYSSIATALAQQSINVDITYSHDWFLDITPKGINKATAIHYIMQKYNLTAEEVCVAGDSANDTSMLTMPGINAILVANHYTEVAHLSALNHVYTSNASHAEGVLEGLIYWQNIAVQNNTSSETTI
>NZ_LN554846.1|WP_045102122.1|1607417_1608101_-|Crp/Fnr-family-transcriptional-regulator
MKISPYSSGRFYSFLASKSNKFKELLYQCQVSTGYVDVGTEILRQGEALDYIYVVPGGRVSMSILALNGRRFQLGEANCDYHIFGEMEFFTQTPCQWTVAADEYLQVDTICLKALTKALYKQPEMMFFFAAALAEDYQDSMDIYTNRLLHPIAYNIGYDLLMQKSGITAALGSFDKVLQEAERFGTSERVYRRAVKSLIDKNLIEKSDQGLVIINEDELRSFLEGNE
>NZ_LN554846.1|WP_045102123.1|1608231_1608966_-|nucleoside-phosphorylase
MSKQPHICVDETQVAPYVIVCGEPDRVNRIVELMDNVELLAENREYRVFNGQYKKTPITVCSTGIGAPSMIIAVEELKLCGATHVIRVGSAGAMQDHIKLGELIVAEGAVRDEGGSKAYIRSAYPAYASFTLLKEINHFLESQSVKYYFGVVRSHDSFYTDEEEQLCQYWNKKGILGADMETSALFTVGRLRGLQVASILNNVVLYQQDVKEGVNQYVNDNEAMMNGERLAAITALEALCKQGS
>NZ_LN554846.1|WP_045102124.1|1608962_1609697_-|nicotinamide-riboside-transporter-PnuC
MDLLSLLDINNTLVNIPIGGGYAMSWVEGFGTIFGLLCIWFASQEKTINYVFGLLNVTLFAVIFFQIQLYGLLLLQLFFFCANIYGWYAWTRPNSSGEILEVRWLSKSKLLAISGSSIVAIALLTIYIDPFFFALATIAVDSMNLFGADLSQPILEPDAFPFWDSSMTVLSIVAQILMTRKYVENWMLWIVINIISVGIYATQGVFAMSVQYSILMFIAANGAREWARTAKENRNEKQVEKAIA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LN554846_1	1.25\|1601885\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601885-1601916	32	MH617650	Inoviridae sp. isolate ctba176, complete genome	1618-1649	2	0.938
NZ_LN554846_1	1.23\|1601764\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601764-1601795	32	MN379636	Chicken microvirus mg7_1, complete genome	1572-1603	4	0.875
NZ_LN554846_1	1.23\|1601764\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601764-1601795	32	MN379629	Chicken microvirus mg4_76, complete genome	1599-1630	4	0.875
NZ_LN554846_1	1.13\|1601164\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601164-1601195	32	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	75200-75231	6	0.812
NZ_LN554846_1	1.13\|1601164\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601164-1601195	32	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	98892-98923	6	0.812
NZ_LN554846_1	1.18\|1601464\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601464-1601495	32	MH491968	Escherichia phage LL5, complete genome	412-443	6	0.812
NZ_LN554846_1	1.3\|1600564\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600564-1600595	32	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	368400-368431	7	0.781
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	124835-124866	7	0.781
NZ_LN554846_1	1.6\|1600744\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600744-1600775	32	NC_015221	Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequence	40322-40353	7	0.781
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP020413	Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence	170572-170603	8	0.75
NZ_LN554846_1	1.8\|1600864\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600864-1600895	32	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	52294-52325	8	0.75
NZ_LN554846_1	1.8\|1600864\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600864-1600895	32	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	63010-63041	8	0.75
NZ_LN554846_1	1.18\|1601464\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601464-1601495	32	MK813941	Aeromonas phage 4_L372XY, complete genome	4955-4986	8	0.75
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP045197	Acinetobacter indicus strain TQ23 plasmid p23TQ-NDM, complete sequence	8187-8218	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_KX832928	Providencia rettgeri strain 06-1619 plasmid p06-1619-NDM, complete sequence	54427-54458	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP045133	Acinetobacter indicus strain TQ18 plasmid p18TQ-NDM, complete sequence	38955-38986	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP045130	Acinetobacter indicus strain TQ04 plasmid p4TQ-NDM, complete sequence	22809-22840	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NC_023322	Acinetobacter bereziniae strain CHI-40-1 plasmid pNDM-40-1, complete sequence	45283-45314	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP010370	Acinetobacter nosocomialis strain 6411 plasmid p6411-9.012kb, complete sequence	7077-7108	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP032278	Acinetobacter sp. WCHAc010034 plasmid pNDM1_010034, complete sequence	16510-16541	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_KM210086	Acinetobacter lwoffii strain JN49-1 plasmid pNDM-JN01, complete sequence	40799-40830	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP027532	Acinetobacter baumannii strain AR_0088 plasmid unnamed2, complete sequence	37544-37575	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP026127	Acinetobacter baumannii strain ABNIH28 plasmid pNDM-0285, complete sequence	22145-22176	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NC_025000	Acinetobacter lwoffii strain Iz4b plasmid pNDM-Iz4b, complete sequence	46285-46316	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP010399	Acinetobacter baumannii strain 6200 plasmid p6200-47.274kb, complete sequence	37156-37187	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP035935	Acinetobacter cumulans strain WCHAc060092 plasmid pNDM1_060092, complete sequence	24397-24428	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NC_020818	Acinetobacter baumannii strain GF216 plasmid pNDM-AB, complete sequence	43283-43314	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_KJ003839	Acinetobacter pittii strain Acinetobacter pitti plasmid pNDM-AP, complete sequence	16565-16596	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	AMXH01000087	Acinetobacter pittii strain XM1570 plasmid pXM1, complete sequence, whole genome shotgun sequence	46989-47020	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NC_019985	Acinetobacter baumannii ZW85-1 plasmid pAbNDM-1, complete sequence	48083-48114	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	LC483156	Acinetobacter pittii SU1805 plasmid pSU1805NDM DNA, complete sequence	255-286	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	MT002974	Acinetobacter baumannii strain AB17 plasmid pAB17, complete sequence	255-286	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP032142	Acinetobacter sp. WCHAc010052 plasmid pNDM1_010052, complete sequence	30330-30361	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP026425	Acinetobacter sp. ACNIH1 plasmid pNDM-9c17, complete sequence	33599-33630	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	LC537594	Acinetobacter lwoffii SU1904 plasmid pSU1904NDM DNA, complete sequence	255-286	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NC_019268	Acinetobacter lwoffii plasmid pNDM-BJ01, complete sequence	46989-47020	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NC_019281	Acinetobacter lwoffii plasmid pNDM-BJ02, complete sequence	45880-45911	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NC_025116	Acinetobacter sp. M131 plasmid pM131_NDM1, complete sequence	8316-8347	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_MK053934	Acinetobacter nosocomialis strain IEC38057 plasmid pIEC38057, complete sequence	255-286	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_KM210088	Acinetobacter sp. JN247 plasmid pNDM-JN02, complete sequence	40799-40830	9	0.719
NZ_LN554846_1	1.4\|1600624\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600624-1600655	32	NZ_CP041229	Acinetobacter haemolyticus strain AN54 plasmid pAhaeAN54e, complete sequence	8269-8300	9	0.719
NZ_LN554846_1	1.6\|1600744\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600744-1600775	32	KM507819	Escherichia phage 121Q, complete genome	9609-9640	9	0.719
NZ_LN554846_1	1.12\|1601104\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601104-1601135	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	920073-920104	9	0.719
NZ_LN554846_1	1.12\|1601104\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601104-1601135	32	NZ_CP015236	Rhodococcus fascians D188 plasmid pFiD188, complete sequence	164958-164989	9	0.719
NZ_LN554846_1	1.12\|1601104\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601104-1601135	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1253176-1253207	9	0.719
NZ_LN554846_1	1.19\|1601524\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601524-1601555	32	NZ_AP014640	Leptolyngbya boryana IAM M-101 plasmid pLBX	24869-24900	9	0.719
NZ_LN554846_1	1.19\|1601524\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601524-1601555	32	NZ_AP018205	Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome	308834-308865	9	0.719
NZ_LN554846_1	1.22\|1601704\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601704-1601735	32	NC_019699	Chroococcidiopsis thermalis PCC 7203 plasmid pCHRO.01, complete sequence	217995-218026	9	0.719
NZ_LN554846_1	1.25\|1601885\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601885-1601916	32	MN693169	Marine virus AFVG_25M309, complete genome	35873-35904	9	0.719
NZ_LN554846_1	1.25\|1601885\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601885-1601916	32	MN693552	Marine virus AFVG_25M467, complete genome	34173-34204	9	0.719
NZ_LN554846_1	1.8\|1600864\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1600864-1600895	32	KU160494	Vibrio phage vB_VmeM-32, complete genome	168109-168140	10	0.688
NZ_LN554846_1	1.19\|1601524\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601524-1601555	32	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	355515-355546	10	0.688
NZ_LN554846_1	1.19\|1601524\|32\|NZ_LN554846\|PILER-CR,CRISPRCasFinder,CRT	1601524-1601555	32	MK448719	Streptococcus phage Javan255, complete genome	820-851	10	0.688

1. spacer 1.25|1601885|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to MH617650 (Inoviridae sp. isolate ctba176, complete genome) position: , mismatch: 2, identity: 0.938

tgagcaagactaacaccagctaaatcagcaga	CRISPR spacer
tgagcaaggctaacgccagctaaatcagcaga	Protospacer
********.*****.*****************

2. spacer 1.23|1601764|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to MN379636 (Chicken microvirus mg7_1, complete genome) position: , mismatch: 4, identity: 0.875

gtact-gcatcaatgacacccgaatcatcataa	CRISPR spacer
-tattagcatcaataacatccgaatcatcataa	Protospacer
 **.* ********.***.**************

3. spacer 1.23|1601764|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to MN379629 (Chicken microvirus mg4_76, complete genome) position: , mismatch: 4, identity: 0.875

gtact-gcatcaatgacacccgaatcatcataa	CRISPR spacer
-tattagcatcaataacatccgaatcatcataa	Protospacer
 **.* ********.***.**************

4. spacer 1.13|1601164|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 6, identity: 0.812

---ttctgtatgagcaattaaaatgttatcgcaag	CRISPR spacer
ataatccgt---agcaattaaaatgttatctcaag	Protospacer
    **.**   ****************** ****

5. spacer 1.13|1601164|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 6, identity: 0.812

---ttctgtatgagcaattaaaatgttatcgcaag	CRISPR spacer
ataatccgt---agcaattaaaatgttatctcaag	Protospacer
    **.**   ****************** ****

6. spacer 1.18|1601464|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to MH491968 (Escherichia phage LL5, complete genome) position: , mismatch: 6, identity: 0.812

taataatgttttttgttggatcttctggcaat	CRISPR spacer
acataatgtcttttgttgcatcttctggcgtt	Protospacer
  *******.******** **********. *

7. spacer 1.3|1600564|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 7, identity: 0.781

cgaggggacagagatcccgcctgaatgcagac	CRISPR spacer
tgaggggacagggatcccgccggattttcgac	Protospacer
.**********.********* ** * . ***

8. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017945 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.781

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
tatgcgagacttggatttcgttttatttgtca	Protospacer
. ** * .*********** *** ********

9. spacer 1.6|1600744|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NC_015221 (Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequence) position: , mismatch: 7, identity: 0.781

tgtttgttcattctatttcaccatt--ttaatta	CRISPR spacer
agtttgttcattttatttctccattactcagt--	Protospacer
 ***********.****** *****  *.*.*

10. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020413 (Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
ttgtattaacttgtatttcttttgattcgtga	Protospacer
.*  * .****** *************.** *

11. spacer 1.8|1600864|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 8, identity: 0.75

agcgacttgatggtgtagcattaaatccatta	CRISPR spacer
aaggacatgatggtgtagaattaaatgaaaga	Protospacer
*. *** *********** *******  *  *

12. spacer 1.8|1600864|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 8, identity: 0.75

agcgacttgatggtgtagcattaaatccatta	CRISPR spacer
aaggacatgatggtgtagaattaaatgaaaga	Protospacer
*. *** *********** *******  *  *

13. spacer 1.18|1601464|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to MK813941 (Aeromonas phage 4_L372XY, complete genome) position: , mismatch: 8, identity: 0.75

taataatgttttttgttggatcttctggcaat	CRISPR spacer
cgttagtgttttttggtggatcttctggctca	Protospacer
.. **.********* *************

14. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045197 (Acinetobacter indicus strain TQ23 plasmid p23TQ-NDM, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

15. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX832928 (Providencia rettgeri strain 06-1619 plasmid p06-1619-NDM, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

16. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045133 (Acinetobacter indicus strain TQ18 plasmid p18TQ-NDM, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

17. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045130 (Acinetobacter indicus strain TQ04 plasmid p4TQ-NDM, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

18. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NC_023322 (Acinetobacter bereziniae strain CHI-40-1 plasmid pNDM-40-1, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

19. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010370 (Acinetobacter nosocomialis strain 6411 plasmid p6411-9.012kb, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

20. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032278 (Acinetobacter sp. WCHAc010034 plasmid pNDM1_010034, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

21. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM210086 (Acinetobacter lwoffii strain JN49-1 plasmid pNDM-JN01, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

22. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027532 (Acinetobacter baumannii strain AR_0088 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

23. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026127 (Acinetobacter baumannii strain ABNIH28 plasmid pNDM-0285, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

24. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NC_025000 (Acinetobacter lwoffii strain Iz4b plasmid pNDM-Iz4b, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

25. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010399 (Acinetobacter baumannii strain 6200 plasmid p6200-47.274kb, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

26. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035935 (Acinetobacter cumulans strain WCHAc060092 plasmid pNDM1_060092, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

27. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NC_020818 (Acinetobacter baumannii strain GF216 plasmid pNDM-AB, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

28. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ003839 (Acinetobacter pittii strain Acinetobacter pitti plasmid pNDM-AP, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

29. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to AMXH01000087 (Acinetobacter pittii strain XM1570 plasmid pXM1, complete sequence, whole genome shotgun sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

30. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NC_019985 (Acinetobacter baumannii ZW85-1 plasmid pAbNDM-1, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

31. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to LC483156 (Acinetobacter pittii SU1805 plasmid pSU1805NDM DNA, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

32. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to MT002974 (Acinetobacter baumannii strain AB17 plasmid pAB17, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

33. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032142 (Acinetobacter sp. WCHAc010052 plasmid pNDM1_010052, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

34. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026425 (Acinetobacter sp. ACNIH1 plasmid pNDM-9c17, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

35. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to LC537594 (Acinetobacter lwoffii SU1904 plasmid pSU1904NDM DNA, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

36. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NC_019268 (Acinetobacter lwoffii plasmid pNDM-BJ01, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

37. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NC_019281 (Acinetobacter lwoffii plasmid pNDM-BJ02, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

38. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NC_025116 (Acinetobacter sp. M131 plasmid pM131_NDM1, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

39. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK053934 (Acinetobacter nosocomialis strain IEC38057 plasmid pIEC38057, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

40. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM210088 (Acinetobacter sp. JN247 plasmid pNDM-JN02, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

41. spacer 1.4|1600624|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041229 (Acinetobacter haemolyticus strain AN54 plasmid pAhaeAN54e, complete sequence) position: , mismatch: 9, identity: 0.719

cttgagcaacttggatttcttttgatttgtca	CRISPR spacer
cttgtgcaacttggacttctttttttaaacct	Protospacer
**** **********.*******  *  ..*

42. spacer 1.6|1600744|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to KM507819 (Escherichia phage 121Q, complete genome) position: , mismatch: 9, identity: 0.719

tgtttgttcattctatttcaccattttaatta	CRISPR spacer
gttctgttaattctatttcaccttttttggtt	Protospacer
  *.**** ************* **** . *

43. spacer 1.12|1601104|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 9, identity: 0.719

cgccgaagttcaacacgtcgtcgcagaagaaa	CRISPR spacer
cgccgaagttcaagacgtcgccggcatagttg	Protospacer
************* ******.**  . **  .

44. spacer 1.12|1601104|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015236 (Rhodococcus fascians D188 plasmid pFiD188, complete sequence) position: , mismatch: 9, identity: 0.719

cgccgaagttcaacacgtcgtcgcagaagaaa	CRISPR spacer
agcagaagttcagcacgtcgtcgccgctcatc	Protospacer
 ** ********.*********** *   *

45. spacer 1.12|1601104|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.719

cgccgaagttcaacacgtcgtcgcagaagaaa	CRISPR spacer
cgccgaagttcaagacgtcgccggcatagttg	Protospacer
************* ******.**  . **  .

46. spacer 1.19|1601524|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014640 (Leptolyngbya boryana IAM M-101 plasmid pLBX) position: , mismatch: 9, identity: 0.719

tgattggtcttgctgcgattggtttcggtatc	CRISPR spacer
tgattgctcttgctgagattggtataactgcg	Protospacer
****** ******** ******* * . *..

47. spacer 1.19|1601524|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018205 (Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome) position: , mismatch: 9, identity: 0.719

tgattggtcttgctgcgattggtttcggtatc	CRISPR spacer
tgattgctcttgctgagattggtataactgcg	Protospacer
****** ******** ******* * . *..

48. spacer 1.22|1601704|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NC_019699 (Chroococcidiopsis thermalis PCC 7203 plasmid pCHRO.01, complete sequence) position: , mismatch: 9, identity: 0.719

tttgtcgccagttttagatcctttttgacagg	CRISPR spacer
catgtcgccagttttaaatcctttgtggataa	Protospacer
. **************.******* **.  ..

49. spacer 1.25|1601885|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to MN693169 (Marine virus AFVG_25M309, complete genome) position: , mismatch: 9, identity: 0.719

tgagcaagactaacaccagctaaatcagcaga	CRISPR spacer
ccgatataactaacaccagctaaaccagcagc	Protospacer
. ...* .****************.******

50. spacer 1.25|1601885|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to MN693552 (Marine virus AFVG_25M467, complete genome) position: , mismatch: 9, identity: 0.719

tgagcaagactaacaccagctaaatcagcaga	CRISPR spacer
ccgatataactaacaccagctaaaccagcagc	Protospacer
. ...* .****************.******

51. spacer 1.8|1600864|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to KU160494 (Vibrio phage vB_VmeM-32, complete genome) position: , mismatch: 10, identity: 0.688

agcgacttgatggtgtagcattaaatccatta	CRISPR spacer
catcatcagattgtgtagcatgaaatccattt	Protospacer
 .. *.. *** ********* *********

52. spacer 1.19|1601524|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 10, identity: 0.688

tgattggtcttgctgcgattggtttcggtatc	CRISPR spacer
gctcaggtcttcctgcgattggcttcggcggc	Protospacer
   . ****** **********.*****.. *

53. spacer 1.19|1601524|32|NZ_LN554846|PILER-CR,CRISPRCasFinder,CRT matches to MK448719 (Streptococcus phage Javan255, complete genome) position: , mismatch: 10, identity: 0.688

tgattggtcttgctgcgattggtttcggtatc	CRISPR spacer
gttctctgcttgttgcgattgttttcggtatg	Protospacer
   .*   ****.******** *********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

712894 : 720142

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045101376.1\|712894_714109_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	4.8e-31	29.7
WP_045101377.1\|714141_714519_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	4.5e-52	75.0
WP_045101378.1\|714646_714970_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.4e-22	44.9
WP_045101379.1\|714985_715501_+	co-chaperone HscB	NA	NA	NA	NA
WP_045101380.1\|715536_717390_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.2e-105	40.0
WP_045101381.1\|717392_717731_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_045101382.1\|717845_718046_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_045101383.1\|718277_719564_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.3e-29	32.6
WP_045101384.1\|719707_720142_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.2e-19	37.7

DBSCAN-SWA_2

1091800 : 1161918

Bacillus_virus(28.57%)

protease,integrase,tRNA,plate,transposase

attL 1089672:1089687|attR 1123325:1123340

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1089672:1089687	attL	NA	NA	NA	NA
WP_045101693.1\|1091800_1092571_-\|protease	ATP-dependent Zn protease	NA	NA	NA	NA
WP_045101694.1\|1092650_1093625_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_045101695.1\|1093674_1094403_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	NA	NA	NA
WP_045101696.1\|1094771_1096547_+\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	9.0e-10	27.0
WP_045101697.1\|1096697_1097219_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.2e-09	32.4
WP_045101698.1\|1097309_1097933_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_045101699.1\|1097988_1099002_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.5e-09	24.0
WP_099047713.1\|1099373_1100963_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_045101700.1\|1100980_1102117_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_012550467.1\|1102128_1102236_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA
WP_045101701.1\|1102228_1102531_+	cytochrome bd biosynthesis protein	NA	NA	NA	NA
WP_045101702.1\|1102713_1103124_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_045101703.1\|1103113_1103800_+	protein TolQ	NA	NA	NA	NA
WP_045101704.1\|1103799_1104246_+	protein TolR	NA	NA	NA	NA
WP_045101705.1\|1104262_1105348_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_045101706.1\|1105358_1106711_+	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_045101707.1\|1106744_1107290_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_045101708.1\|1107315_1108083_+	tol-pal system protein YbgF	NA	NA	NA	NA
WP_045101709.1\|1108218_1109268_+	quinolinate synthase NadA	NA	NA	NA	NA
WP_045101710.1\|1109290_1110862_-	diguanylate cyclase	NA	NA	NA	NA
WP_045101711.1\|1111291_1112629_+	GTPase HflX	NA	NA	NA	NA
WP_045101712.1\|1112727_1113153_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_045101713.1\|1113251_1114232_-	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_045101714.1\|1114355_1114673_-	hypothetical protein	NA	NA	NA	NA
WP_045101715.1\|1114736_1115897_-	MFS transporter	NA	NA	NA	NA
WP_045101716.1\|1116104_1116959_-	DMT family transporter	NA	NA	NA	NA
WP_080889785.1\|1117146_1118115_-\|integrase	integron integrase	A0A0A8WIE1	Clostridium_phage	5.4e-09	27.4
WP_045101717.1\|1118911_1120441_+	hypothetical protein	NA	NA	NA	NA
WP_045101718.1\|1120610_1121567_+	5'-nucleotidase	NA	NA	NA	NA
WP_045101719.1\|1121718_1122396_+	hypothetical protein	NA	NA	NA	NA
WP_045101720.1\|1122548_1123193_+	hypothetical protein	NA	NA	NA	NA
WP_045101721.1\|1123346_1123823_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
1123325:1123340	attR	NA	NA	NA	NA
WP_045101722.1\|1123987_1124458_+	hypothetical protein	NA	NA	NA	NA
WP_045101723.1\|1126220_1127096_+	hypothetical protein	NA	NA	NA	NA
WP_045101724.1\|1127136_1128093_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_045101725.1\|1128454_1128976_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_045101726.1\|1131182_1131497_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_045101727.1\|1131504_1131747_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_045103280.1\|1133133_1133592_+	MaoC family dehydratase	NA	NA	NA	NA
WP_045101728.1\|1134163_1134481_-	CcdB family protein	NA	NA	NA	NA
WP_045101729.1\|1134481_1134727_-	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA
WP_052662823.1\|1135265_1135760_+	hypothetical protein	NA	NA	NA	NA
WP_052662824.1\|1136052_1138539_+	EAL domain-containing protein	G3MA91	Bacillus_virus	1.4e-16	30.7
WP_045101730.1\|1138702_1141870_-	chitinase	NA	NA	NA	NA
WP_045101731.1\|1142082_1143000_-	hypothetical protein	NA	NA	NA	NA
WP_045101732.1\|1145769_1146741_-	protein kinase	A0A1B1IUU3	uncultured_Mediterranean_phage	1.3e-10	25.5
WP_045101733.1\|1146737_1147409_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_045101734.1\|1147405_1150927_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_045101735.1\|1150938_1151772_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_045101736.1\|1151773_1153096_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_045101737.1\|1153107_1153596_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_045101738.1\|1153632_1154919_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_099047714.1\|1154920_1155049_-	hypothetical protein	NA	NA	NA	NA
WP_045101739.1\|1155051_1156584_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_045101740.1\|1156586_1159169_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	9.4e-93	32.2
WP_045101741.1\|1159165_1160203_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_045101742.1\|1160166_1161918_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_3

1629647 : 1726658

Vibrio_virus(11.76%)

protease,integrase,tail,portal,tRNA,plate,transposase

attL 1683352:1683411|attR 1726626:1728975

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045102136.1\|1629647_1632035_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	2.1e-06	22.2
WP_045102137.1\|1632052_1633036_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.1e-36	38.7
WP_045102138.1\|1633352_1635551_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_045102139.1\|1636335_1637055_-	hypothetical protein	NA	NA	NA	NA
WP_045102140.1\|1637083_1637815_-	hypothetical protein	NA	NA	NA	NA
WP_045102141.1\|1637801_1638524_-	hypothetical protein	NA	NA	NA	NA
WP_052662835.1\|1638513_1641792_-	hypothetical protein	NA	NA	NA	NA
WP_045102142.1\|1641788_1642643_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_045102143.1\|1642642_1644715_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.2e-27	25.7
WP_045102144.1\|1645043_1645571_-	heme utilization protein HutZ	NA	NA	NA	NA
WP_045102145.1\|1645592_1646084_-	heme utilization cystosolic carrier protein HutX	NA	NA	NA	NA
WP_045102146.1\|1646123_1647482_-	heme anaerobic degradation radical SAM methyltransferase ChuW/HutW	NA	NA	NA	NA
WP_099047726.1\|1647631_1648378_+	energy transducer TonB	NA	NA	NA	NA
WP_045102147.1\|1648394_1649084_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_045102148.1\|1649080_1649497_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_045102149.1\|1649496_1650345_+	hemin ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_045102150.1\|1650357_1651395_+	iron ABC transporter permease	NA	NA	NA	NA
WP_045102151.1\|1651394_1652174_+	heme ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.3e-13	27.6
WP_045102152.1\|1652423_1652777_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_005419080.1\|1652817_1653012_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_080889798.1\|1653120_1653672_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	9.8e-16	35.0
WP_045102154.1\|1653675_1655604_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.3e-128	36.9
WP_045102155.1\|1656025_1657072_+	site-specific DNA-methyltransferase	K7RG04	Vibrio_phage	3.2e-108	66.1
WP_052662838.1\|1657213_1658614_-	hypothetical protein	NA	NA	NA	NA
WP_045102156.1\|1658779_1659634_-	hypothetical protein	NA	NA	NA	NA
WP_045102157.1\|1659730_1660021_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_045102158.1\|1660096_1661338_-\|integrase	site-specific integrase	A0A067ZJC5	Vibrio_phage	1.2e-64	36.9
WP_045102159.1\|1661338_1662313_-	hypothetical protein	A0A1I9KF94	Aeromonas_phage	4.3e-46	33.3
WP_045102160.1\|1662312_1662516_-	hypothetical protein	NA	NA	NA	NA
WP_045102161.1\|1662499_1662880_-	hypothetical protein	NA	NA	NA	NA
WP_045102162.1\|1662890_1665734_-\|tail	phage tail tape measure protein	A0A1W6JT50	Escherichia_phage	3.7e-42	32.3
WP_045103312.1\|1665887_1666403_-	hypothetical protein	NA	NA	NA	NA
WP_045102163.1\|1666614_1667103_-	hypothetical protein	Q6R4W3	Vibrio_virus	9.6e-15	35.0
WP_045102164.1\|1667092_1668277_-\|tail	tail protein	Q6R4W2	Vibrio_virus	4.2e-80	42.9
WP_045102165.1\|1668276_1668492_-	hypothetical protein	NA	NA	NA	NA
WP_045102166.1\|1668589_1669132_-	hypothetical protein	NA	NA	NA	NA
WP_045102167.1\|1669128_1670196_-	hypothetical protein	NA	NA	NA	NA
WP_045102168.1\|1670192_1671083_-	hypothetical protein	NA	NA	NA	NA
WP_052662839.1\|1671082_1671787_-\|tail	phage tail protein I	NA	NA	NA	NA
WP_045102169.1\|1671770_1672751_-\|plate	baseplate J protein	Q6R4V6	Vibrio_virus	5.6e-46	34.9
WP_045102170.1\|1672747_1673080_-\|plate	phage baseplate protein	NA	NA	NA	NA
WP_045102171.1\|1673076_1673793_-\|plate	phage baseplate assembly protein V	A2I2X5	Vibrio_virus	4.7e-18	42.1
WP_052662840.1\|1673761_1674268_-	hypothetical protein	NA	NA	NA	NA
WP_045102173.1\|1674233_1674761_-	hypothetical protein	B0ZSF5	Halomonas_phage	2.9e-25	40.3
WP_045102174.1\|1674738_1675071_-	hypothetical protein	NA	NA	NA	NA
WP_045102175.1\|1675072_1675405_-	hypothetical protein	NA	NA	NA	NA
WP_045102176.1\|1675468_1677631_-\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	6.5e-55	27.3
WP_045102177.1\|1677623_1679111_-\|portal	phage portal protein	S5MW34	Escherichia_phage	9.6e-74	35.8
WP_045102178.1\|1679103_1679310_-	hypothetical protein	NA	NA	NA	NA
WP_045102179.1\|1679306_1681397_-	DNA packaging protein	A0A219YAX2	Aeromonas_phage	1.6e-119	36.9
WP_045102180.1\|1681377_1681848_-	hypothetical protein	NA	NA	NA	NA
WP_045102181.1\|1682064_1682274_-	hypothetical protein	NA	NA	NA	NA
WP_045102182.1\|1682263_1682632_-	hypothetical protein	NA	NA	NA	NA
WP_045102183.1\|1682633_1683161_-	lysozyme	Q2A0C5	Sodalis_phage	1.1e-24	42.3
WP_080889799.1\|1683141_1683363_-	hypothetical protein	NA	NA	NA	NA
1683352:1683411	attL	NA	NA	NA	NA
WP_045101016.1\|1683378_1684902_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	5.4e-80	39.3
WP_045101017.1\|1684987_1685332_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.4e-20	48.6
WP_045102184.1\|1685837_1686737_-	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_080889800.1\|1686738_1687932_-	AAA family ATPase	NA	NA	NA	NA
WP_045102186.1\|1688173_1688773_-	hypothetical protein	NA	NA	NA	NA
WP_045102187.1\|1688769_1688964_-	hypothetical protein	NA	NA	NA	NA
WP_045102188.1\|1688960_1689689_-	ATP-binding protein	S4TNF5	Salmonella_phage	2.1e-42	44.7
WP_052662841.1\|1689691_1690012_-	hypothetical protein	NA	NA	NA	NA
WP_080889801.1\|1689969_1690413_-	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	1.1e-30	74.2
WP_045102189.1\|1690553_1691099_-	hypothetical protein	NA	NA	NA	NA
WP_080889802.1\|1691151_1691433_-	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	2.5e-07	45.3
WP_045102191.1\|1691498_1692155_+	helix-turn-helix domain-containing protein	Q37946	Enterobacteria_phage	6.6e-67	58.5
WP_023603432.1\|1692312_1692570_+	hypothetical protein	NA	NA	NA	NA
WP_045102192.1\|1692632_1692941_+	hypothetical protein	NA	NA	NA	NA
WP_045102193.1\|1692918_1693194_-	hypothetical protein	NA	NA	NA	NA
WP_023603434.1\|1693443_1693683_+	hypothetical protein	NA	NA	NA	NA
WP_052662842.1\|1693679_1694351_+	DUF2786 domain-containing protein	L7P7W8	Pseudomonas_phage	1.0e-19	31.2
WP_045102194.1\|1694338_1694722_+	hypothetical protein	NA	NA	NA	NA
WP_045102195.1\|1694839_1695031_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_045102196.1\|1695077_1696301_-	hypothetical protein	NA	NA	NA	NA
WP_045102197.1\|1696293_1697445_-	hypothetical protein	NA	NA	NA	NA
WP_045102198.1\|1697521_1698739_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	1.1e-54	30.7
WP_045102199.1\|1699143_1699890_-	sporulation protein	NA	NA	NA	NA
WP_045102200.1\|1700246_1702139_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.6e-27	35.4
WP_045102201.1\|1702555_1704439_+	glutamate decarboxylase	M1HWX9	Paramecium_bursaria_Chlorella_virus	1.4e-16	25.4
WP_045102202.1\|1704519_1705602_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_045102203.1\|1705674_1705992_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_045102204.1\|1706065_1707418_-	molecular chaperone	NA	NA	NA	NA
WP_045102205.1\|1707479_1708028_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_045102206.1\|1708239_1708947_+	DUF3581 domain-containing protein	NA	NA	NA	NA
WP_045102207.1\|1709095_1711810_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	1.2e-111	32.6
WP_045102208.1\|1712137_1712842_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA
WP_045102209.1\|1713328_1715605_+	ribonucleoside-diphosphate reductase subunit alpha	A0A2D1GNB1	Pseudoalteromonas_phage	8.4e-295	65.8
WP_045102210.1\|1715772_1716906_+	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	1.3e-163	73.3
WP_045102211.1\|1716973_1719496_-	hypothetical protein	NA	NA	NA	NA
WP_045102212.1\|1719542_1720841_-	hypothetical protein	NA	NA	NA	NA
WP_045102213.1\|1721187_1722672_+	carboxypeptidase M32	NA	NA	NA	NA
WP_045102214.1\|1722882_1724013_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_045102215.1\|1724015_1724339_+	endoribonuclease L-PSP	NA	NA	NA	NA
WP_045101017.1\|1724704_1725049_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.4e-20	48.6
WP_045101016.1\|1725134_1726658_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	5.4e-80	39.3
1726626:1728975	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2405168 : 2412717

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045102754.1\|2405168_2406467_-	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	3.8e-26	29.4
WP_045102755.1\|2406499_2407192_-	phosphate regulon transcriptional regulatory protein PhoB	W8CYM9	Bacillus_phage	8.2e-36	37.1
WP_080889813.1\|2407404_2408319_+	recombination-associated protein RdgC	A0A2I7RNT5	Vibrio_phage	3.0e-102	60.1
WP_045102756.1\|2408544_2409936_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	7.4e-161	75.4
WP_045102757.1\|2409935_2410190_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	5.2e-20	53.9
WP_045102758.1\|2410289_2411384_-	DUF3541 domain-containing protein	NA	NA	NA	NA
WP_045102759.1\|2411571_2412717_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	4.9e-17	24.6

DBSCAN-SWA_5

2457245 : 2467811

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045102789.1\|2457245_2457893_+	ATP-binding cassette domain-containing protein	A0A285PWH2	Cedratvirus	6.8e-16	31.3
WP_045102790.1\|2457885_2458515_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_045102791.1\|2458584_2459547_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.1e-37	36.0
WP_099047741.1\|2459602_2460649_-	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	3.0e-05	35.8
WP_045102793.1\|2460651_2461278_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.6e-33	51.2
WP_080889816.1\|2461274_2462054_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.6e-64	51.6
WP_045102795.1\|2462074_2463121_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_045102796.1\|2463136_2463616_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_045102797.1\|2463615_2464332_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	3.4e-08	31.1
WP_045102798.1\|2464335_2464620_-	cell division protein FtsB	NA	NA	NA	NA
WP_045102799.1\|2464795_2466094_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	6.5e-135	60.3
WP_045102800.1\|2466170_2467811_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.7e-154	51.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LN554847

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LN554848

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_LN554846

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection