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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LM995447 [Clostridium] cellulosi genome assembly DG5, chromosome : I 5 crisprs cas3,PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csa3,cas2,cas1,cas4,cas7,cas8c,cas5 0 11 3 0

Results visualization

1. NZ_LM995447
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LM995447_1 352008-352101 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LM995447_2 491213-491359 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LM995447_3 1504440-1504552 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LM995447_4 2129406-2135837 TypeI I-C
95 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LM995447_5 2144047-2144139 TypeI NA
1 spacers
cas3,cas5,cas8c,cas7,cas4,cas1,cas2

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LM995447_4 4.85|2135101|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2135101-2135134 34 MK770412 Salmonella phage SE5, complete genome 1732-1765 6 0.824
NZ_LM995447_4 4.87|2135234|33|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2135234-2135266 33 NC_015383 Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence 387184-387216 6 0.818
NZ_LM995447_4 4.72|2134224|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2134224-2134258 35 MK554696 Fusobacterium phage Fnu1, complete genome 83555-83589 7 0.8
NZ_LM995447_4 4.10|2130044|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2130044-2130077 34 EU871039 Lactobacillus phage Lv-1, complete genome 27670-27703 8 0.765
NZ_LM995447_4 4.12|2130176|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2130176-2130209 34 KU873925 Pseudomonas phage pf16, complete genome 54031-54064 9 0.735
NZ_LM995447_4 4.15|2130376|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2130376-2130410 35 MK577502 Aeromonas phage Asfd_1, partial genome 52558-52592 9 0.743
NZ_LM995447_4 4.15|2130376|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2130376-2130410 35 MN871507 UNVERIFIED: Aeromonas phage asfd_1h, complete genome 1146-1180 9 0.743
NZ_LM995447_4 4.38|2131930|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2131930-2131964 35 NZ_CP042296 Escherichia coli strain RM9088 plasmid p1RM9088, complete sequence 97384-97418 9 0.743
NZ_LM995447_4 4.80|2134765|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2134765-2134799 35 NZ_CP021832 Sinorhizobium meliloti strain HM006 plasmid accessoryA, complete sequence 4349-4383 9 0.743
NZ_LM995447_4 4.90|2135435|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2135435-2135469 35 NZ_CP011518 Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence 48078-48112 9 0.743
NZ_LM995447_4 4.90|2135435|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2135435-2135469 35 MN945902 Rhodococcus phage Dinger, complete genome 2902-2936 9 0.743
NZ_LM995447_4 4.41|2132133|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2132133-2132167 35 NZ_CP010112 Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence 83370-83404 10 0.714
NZ_LM995447_4 4.92|2135569|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2135569-2135602 34 NZ_CP013709 Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence 93362-93395 10 0.706
NZ_LM995447_4 4.92|2135569|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2135569-2135602 34 NZ_CP013682 Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence 95694-95727 10 0.706
NZ_LM995447_4 4.92|2135569|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2135569-2135602 34 NZ_CP013295 Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence 106410-106443 10 0.706
NZ_LM995447_4 4.92|2135569|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2135569-2135602 34 NZ_CP013844 Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence 138799-138832 10 0.706
NZ_LM995447_4 4.15|2130376|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2130376-2130410 35 KX822733 Pseudoalteromonas phage PH357, complete genome 98954-98988 11 0.686
NZ_LM995447_4 4.90|2135435|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder 2135435-2135469 35 KX712237 Rhodococcus phage Partridge, complete genome 2965-2999 11 0.686

1. spacer 4.85|2135101|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to MK770412 (Salmonella phage SE5, complete genome) position: , mismatch: 6, identity: 0.824

tgcagcagatttcaaccttcgtattggggtttta	CRISPR spacer
ggaatccgatttcaaccttcgtattgtggttgta	Protospacer
 * * * ******************* **** **

2. spacer 4.87|2135234|33|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to NC_015383 (Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence) position: , mismatch: 6, identity: 0.818

ccgttgctatccgtgtatgtgcgcgattgaatc---	CRISPR spacer
tcgttgctatccgggtaggtgcgcga---aatcacg	Protospacer
.************ *** ********   ****   

3. spacer 4.72|2134224|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to MK554696 (Fusobacterium phage Fnu1, complete genome) position: , mismatch: 7, identity: 0.8

ttggttataaaagacaagatgaaaagaaaattgat-	CRISPR spacer
atagttataaaagagaagatgaaaa-taatttaata	Protospacer
 *.*********** **********  ** **.** 

4. spacer 4.10|2130044|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to EU871039 (Lactobacillus phage Lv-1, complete genome) position: , mismatch: 8, identity: 0.765

catataggcaccatgcttgcggatggtgggaagt	CRISPR spacer
catataagcaccgtgcttgcggattgcaggtaag	Protospacer
******.*****.*********** *..** *. 

5. spacer 4.12|2130176|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to KU873925 (Pseudomonas phage pf16, complete genome) position: , mismatch: 9, identity: 0.735

-----cggaaaattacgcgggagttcttgccggacttgt	CRISPR spacer
aacgccaga-----acgcgggtgttcttgccgtacttgc	Protospacer
     *.**     ******* ********** *****.

6. spacer 4.15|2130376|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to MK577502 (Aeromonas phage Asfd_1, partial genome) position: , mismatch: 9, identity: 0.743

tgttgcattttaagcaacatgttgataaatttgtt	CRISPR spacer
ttcagcattttaaacaaaatgttgataaaatcgga	Protospacer
* . *********.*** *********** *.*  

7. spacer 4.15|2130376|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to MN871507 (UNVERIFIED: Aeromonas phage asfd_1h, complete genome) position: , mismatch: 9, identity: 0.743

tgttgcattttaagcaacatgttgataaatttgtt	CRISPR spacer
ttcagcattttaaacaaaatgttgataaaatcgga	Protospacer
* . *********.*** *********** *.*  

8. spacer 4.38|2131930|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP042296 (Escherichia coli strain RM9088 plasmid p1RM9088, complete sequence) position: , mismatch: 9, identity: 0.743

tttgttattctaaacagttctttagcaacttcctg	CRISPR spacer
cagtttattctaaacagttctttagaaacattttt	Protospacer
.   ********************* *** *..* 

9. spacer 4.80|2134765|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021832 (Sinorhizobium meliloti strain HM006 plasmid accessoryA, complete sequence) position: , mismatch: 9, identity: 0.743

taaagcaatagcggcagcatatgttgcaaagtccg	CRISPR spacer
aggcgcaggtgcggcagcatctgttgcaaaatccg	Protospacer
 .. ***.  ********** *********.****

10. spacer 4.90|2135435|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 9, identity: 0.743

atttatagcatcgatgtgttcctcgatttcctgca	CRISPR spacer
atcgtaagcatcgatatgttgctcgatttcccggt	Protospacer
**.   *********.**** **********.*  

11. spacer 4.90|2135435|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to MN945902 (Rhodococcus phage Dinger, complete genome) position: , mismatch: 9, identity: 0.743

atttat---agcatcgatgtgttcctcgatttcctgca	CRISPR spacer
---tacgcgaatgtcgatgtattccttgatttcctgca	Protospacer
   **.   *...*******.*****.***********

12. spacer 4.41|2132133|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 10, identity: 0.714

ttaaatttttcagggatttcaaaatcttcaaaagt	CRISPR spacer
taatcattttcaggtatttcaaaatgttcaattaa	Protospacer
* *   ******** ********** *****  . 

13. spacer 4.92|2135569|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 10, identity: 0.706

gtatggttcattttcaatttcaactactctaatt	CRISPR spacer
atatgcttcgttttcaatttcaactatggctagg	Protospacer
.**** ***.****************.  . *  

14. spacer 4.92|2135569|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 10, identity: 0.706

gtatggttcattttcaatttcaactactctaatt	CRISPR spacer
atatgcttcgttttcaatttcaactatggctagg	Protospacer
.**** ***.****************.  . *  

15. spacer 4.92|2135569|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 10, identity: 0.706

gtatggttcattttcaatttcaactactctaatt	CRISPR spacer
atatgcttcgttttcaatttcaactatggctagg	Protospacer
.**** ***.****************.  . *  

16. spacer 4.92|2135569|34|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 10, identity: 0.706

gtatggttcattttcaatttcaactactctaatt	CRISPR spacer
atatgcttcgttttcaatttcaactatggctagg	Protospacer
.**** ***.****************.  . *  

17. spacer 4.15|2130376|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to KX822733 (Pseudoalteromonas phage PH357, complete genome) position: , mismatch: 11, identity: 0.686

tgttgcattttaagcaacatgttgataaatttgtt	CRISPR spacer
cctcttatattaagcaacatgttgataagttgaca	Protospacer
. *. .** *******************.** .. 

18. spacer 4.90|2135435|35|NZ_LM995447|CRT,PILER-CR,CRISPRCasFinder matches to KX712237 (Rhodococcus phage Partridge, complete genome) position: , mismatch: 11, identity: 0.686

atttatagcatcgatgtgttcctcgatttcctgca	CRISPR spacer
gacgcgaatgtcgatgtattccttgatttcctgca	Protospacer
. .   *...*******.*****.***********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 431585 : 443321 11 Synechococcus_phage(30.0%) NA NA
DBSCAN-SWA_2 574943 : 583855 10 Escherichia_phage(28.57%) NA NA
DBSCAN-SWA_3 648529 : 657078 8 Bacillus_phage(33.33%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage