CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP010341	Propionibacterium freudenreichii subsp. freudenreichii strain 20271T chromosome, complete genome	6 crisprs	DEDDh,cas2,cas1,csb3,cas3,csb2gr5,csb1gr7,csa3,DinG,WYL	1	16	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010341_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010341_1

413341-416346

Unclear

Consensus_repeat	Method
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	PILER-CR
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CRISPRCasFinder
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CRT

41 spacers

cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

The CRISPR arrays of NZ_CP010341_1

>merge|NZ_CP010341|1|413341-416346|PILER-CR,CRISPRCasFinder,CRT
GCCTCAATGAAGGGCCTCTCCAGAAGGAGGGGCAATGGTTTGATCCATACCCGGAATGATCGCTCTTTCGCTCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCCGCCCGAACTCTAGGTTTCTGTGCGCACACCATGACGCCTCAATGAAGGGCCCCTCCAGAAGGAGAGGCAATACGGCAACCGTCCCTCGCCGAGCCGGGGCCTTGGTGCGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGGGCAAGACGACTCTGTCCACGATTGAGGGTGACGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTGCGATCATCTGGTCCACGTCGAGCCCGGTGCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATAGAACGTCAGCCCCATACCCTCAAGCACCTGACGGAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATATCGTCTGCTTGGCAGTCTCCGGGATACCCCCAAAGATGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCCTACGGTTTGACGATGAGCAAGGGTGAGATCGAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGTGGGGCCCTTCTTGATTTGTCCTTGTGGTACACAGTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCTTATCGAACGGCGGAAACCAATCGGAACGGCCGCCGCCTCAATGAAGGGCCCCTCCAGAGAGAGGGGCAATTGGACCTGCCCGCCTGGACCCTGCCCGCCGGCCACTTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGCGAGGGCCAACCAAACGAACTGCCAACAACAAGGAGTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTGAGTCGCGAAAAGCCTTTAACGAGAGCCACCCCTGCGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCCCGAGCAGCGTCCCGAGCGGCGTTCAGAGCGGCGCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCTCCGCCGAGGTCGGTGGATTTTACAACGAGTGGGTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGGTATGGTCGTCCACGGCGCTAGAGGGTAAGACCGGTAAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCCGGACCAGCCAGATCGCTGGTCGCCGACGCGAAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGCCCTCGGCACTGCTGGCGTGTGATCTGATGCGCACGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCACCTTGTAATCAAGTCTGTCAAGTGAGCTGGTAGGGCCTCAATGAAGGGCCCCTCCAGAAGAAGGGGCAATATCACCCCTTCAGCAGGAAGCCAGTGGACCTTACCGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCCTGTGCAGTCGGTTTCCACCGTCGATGTCGACAGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGGTCCGGTTCGTCGGGGTCTTCGAGCAGGGTGACGCGGGTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGCCACGAAGGGTGAGTCGGTGACGGCGCGAGAATAGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATATTCGCCAGGTGAGCGGGAAGGGTGCAAATAGCTAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGTGCGACGCCCAGCCGGCGCCAACGATATTGTGGTCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTCAACGACCGGCCCGACGCCTTGAGCTCCTTGACGAAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGGTGAGCTCTGACTGGATTGTGTTCATGTGGAGACCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATAGGAGGCGTCCGCCATCCCTTTTCCAGCCAGGCATCGGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCTGGAGGCGCTGCGAGGTGCCGCCAGACAAGAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGCTTGCTCAGAGCTTGTCTCTTTTGGTCGTTTTGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGCTTGCTCAGAGCTTGTCTCTTTTGGTCGTTTTGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTGCTGTGCAATGGCAGTCACTCCCGGTGGTCTTGCCTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTCTCCGCCACCAAGGCCAAGGAGACCCTGCCGCCCGACGTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTGTTTCTCCCTAAAACTTTAGTGTATATCCGACTTCTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCAGAAGTCTGTGCCGTCCGGGCGAACAGACTTAAAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATAATAGGTGCGGTTCATGCCGCGACCGCGACGCTCGGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCAGTCGATCCGTCTGTCGAAGGACTCGAACGGCCAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGGGTTTACGCGAGGGTGAGCATCAATGCCTACCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGGGATGGTTGGAGATGGTCCGCCCGATCACATCGACGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGATTACGGCTTTTCCGTTCAGGAATTAGCGGACGGTGCCTCAATGAAGGGCCCCTCCAGGAGGAGGGGCAATCTCCTGCTCGTGGAGCCTGTAGGTGCCATGTGGACCCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT

>NZ_CP010341|1|1|413341-416346|PILER-CR
GCCTCAATGAAGGGCCTCTCCAGAAGGAGGGGCAAT	GGTTTGATCCATACCCGGAATGATCGCTCTTTCGC
TCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCGCCCGAACTCTAGGTTTCTGTGCGCACACCATGAC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGAGGCAAT	ACGGCAACCGTCCCTCGCCGAGCCGGGGCCTTGGTGCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGGGCAAGACGACTCTGTCCACGATTGAGGGTGACG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGCGATCATCTGGTCCACGTCGAGCCCGGTGCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AGAACGTCAGCCCCATACCCTCAAGCACCTGACGGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ATCGTCTGCTTGGCAGTCTCCGGGATACCCCCAAAGAT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCTACGGTTTGACGATGAGCAAGGGTGAGATCGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GTGGGGCCCTTCTTGATTTGTCCTTGTGGTACACAGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CTTATCGAACGGCGGAAACCAATCGGAACGGCCGCC
GCCTCAATGAAGGGCCCCTCCAGAGAGAGGGGCAAT	TGGACCTGCCCGCCTGGACCCTGCCCGCCGGCCACTT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GCGAGGGCCAACCAAACGAACTGCCAACAACAAGGAGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGAGTCGCGAAAAGCCTTTAACGAGAGCCACCCCTGCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCCGAGCAGCGTCCCGAGCGGCGTTCAGAGCGGCGCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CTCCGCCGAGGTCGGTGGATTTTACAACGAGTGGGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGTATGGTCGTCCACGGCGCTAGAGGGTAAGACCGGTAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCGGACCAGCCAGATCGCTGGTCGCCGACGCGAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GCCCTCGGCACTGCTGGCGTGTGATCTGATGCGCAC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CACCTTGTAATCAAGTCTGTCAAGTGAGCTGGTAGG
GCCTCAATGAAGGGCCCCTCCAGAAGAAGGGGCAAT	ATCACCCCTTCAGCAGGAAGCCAGTGGACCTTACCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCTGTGCAGTCGGTTTCCACCGTCGATGTCGACAG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGTCCGGTTCGTCGGGGTCTTCGAGCAGGGTGACGCGGGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GCCACGAAGGGTGAGTCGGTGACGGCGCGAGAATAG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ATTCGCCAGGTGAGCGGGAAGGGTGCAAATAGCTA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGTGCGACGCCCAGCCGGCGCCAACGATATTGTGGTC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTCAACGACCGGCCCGACGCCTTGAGCTCCTTGACGAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGTGAGCTCTGACTGGATTGTGTTCATGTGGAGACC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AGGAGGCGTCCGCCATCCCTTTTCCAGCCAGGCATCGG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CTGGAGGCGCTGCGAGGTGCCGCCAGACAAGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGCTTGCTCAGAGCTTGTCTCTTTTGGTCGTTTTGC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGCTTGCTCAGAGCTTGTCTCTTTTGGTCGTTTTGC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGCTGTGCAATGGCAGTCACTCCCGGTGGTCTTGCCT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TCTCCGCCACCAAGGCCAAGGAGACCCTGCCGCCCGACGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGTTTCTCCCTAAAACTTTAGTGTATATCCGACTTCT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CAGAAGTCTGTGCCGTCCGGGCGAACAGACTTAAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AATAGGTGCGGTTCATGCCGCGACCGCGACGCTCGG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CAGTCGATCCGTCTGTCGAAGGACTCGAACGGCCA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGGTTTACGCGAGGGTGAGCATCAATGCCTACCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGGATGGTTGGAGATGGTCCGCCCGATCACATCGAC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GATTACGGCTTTTCCGTTCAGGAATTAGCGGACGGT
GCCTCAATGAAGGGCCCCTCCAGGAGGAGGGGCAAT	CTCCTGCTCGTGGAGCCTGTAGGTGCCATGTGGACCCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT

>NZ_CP010341|1|1|413341-416346|CRISPRCasFinder
GCCTCAATGAAGGGCCTCTCCAGAAGGAGGGGCAAT	GGTTTGATCCATACCCGGAATGATCGCTCTTTCGC
TCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCGCCCGAACTCTAGGTTTCTGTGCGCACACCATGAC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGAGGCAAT	ACGGCAACCGTCCCTCGCCGAGCCGGGGCCTTGGTGCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGGGCAAGACGACTCTGTCCACGATTGAGGGTGACG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGCGATCATCTGGTCCACGTCGAGCCCGGTGCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AGAACGTCAGCCCCATACCCTCAAGCACCTGACGGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ATCGTCTGCTTGGCAGTCTCCGGGATACCCCCAAAGAT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCTACGGTTTGACGATGAGCAAGGGTGAGATCGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GTGGGGCCCTTCTTGATTTGTCCTTGTGGTACACAGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CTTATCGAACGGCGGAAACCAATCGGAACGGCCGCC
GCCTCAATGAAGGGCCCCTCCAGAGAGAGGGGCAAT	TGGACCTGCCCGCCTGGACCCTGCCCGCCGGCCACTT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GCGAGGGCCAACCAAACGAACTGCCAACAACAAGGAGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGAGTCGCGAAAAGCCTTTAACGAGAGCCACCCCTGCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCCGAGCAGCGTCCCGAGCGGCGTTCAGAGCGGCGCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CTCCGCCGAGGTCGGTGGATTTTACAACGAGTGGGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGTATGGTCGTCCACGGCGCTAGAGGGTAAGACCGGTAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCGGACCAGCCAGATCGCTGGTCGCCGACGCGAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GCCCTCGGCACTGCTGGCGTGTGATCTGATGCGCAC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CACCTTGTAATCAAGTCTGTCAAGTGAGCTGGTAGG
GCCTCAATGAAGGGCCCCTCCAGAAGAAGGGGCAAT	ATCACCCCTTCAGCAGGAAGCCAGTGGACCTTACCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCTGTGCAGTCGGTTTCCACCGTCGATGTCGACAG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGTCCGGTTCGTCGGGGTCTTCGAGCAGGGTGACGCGGGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GCCACGAAGGGTGAGTCGGTGACGGCGCGAGAATAG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ATTCGCCAGGTGAGCGGGAAGGGTGCAAATAGCTA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGTGCGACGCCCAGCCGGCGCCAACGATATTGTGGTC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTCAACGACCGGCCCGACGCCTTGAGCTCCTTGACGAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGTGAGCTCTGACTGGATTGTGTTCATGTGGAGACC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AGGAGGCGTCCGCCATCCCTTTTCCAGCCAGGCATCGG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CTGGAGGCGCTGCGAGGTGCCGCCAGACAAGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGCTTGCTCAGAGCTTGTCTCTTTTGGTCGTTTTGC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGCTTGCTCAGAGCTTGTCTCTTTTGGTCGTTTTGC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGCTGTGCAATGGCAGTCACTCCCGGTGGTCTTGCCT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TCTCCGCCACCAAGGCCAAGGAGACCCTGCCGCCCGACGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGTTTCTCCCTAAAACTTTAGTGTATATCCGACTTCT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CAGAAGTCTGTGCCGTCCGGGCGAACAGACTTAAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AATAGGTGCGGTTCATGCCGCGACCGCGACGCTCGG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CAGTCGATCCGTCTGTCGAAGGACTCGAACGGCCA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGGTTTACGCGAGGGTGAGCATCAATGCCTACCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGGATGGTTGGAGATGGTCCGCCCGATCACATCGAC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GATTACGGCTTTTCCGTTCAGGAATTAGCGGACGGT
GCCTCAATGAAGGGCCCCTCCAGGAGGAGGGGCAAT	CTCCTGCTCGTGGAGCCTGTAGGTGCCATGTGGACCCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT

>NZ_CP010341|1|1|413341-416346|CRT
GCCTCAATGAAGGGCCTCTCCAGAAGGAGGGGCAAT	GGTTTGATCCATACCCGGAATGATCGCTCTTTCGC
TCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCGCCCGAACTCTAGGTTTCTGTGCGCACACCATGAC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGAGGCAAT	ACGGCAACCGTCCCTCGCCGAGCCGGGGCCTTGGTGCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGGGCAAGACGACTCTGTCCACGATTGAGGGTGACG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGCGATCATCTGGTCCACGTCGAGCCCGGTGCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AGAACGTCAGCCCCATACCCTCAAGCACCTGACGGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ATCGTCTGCTTGGCAGTCTCCGGGATACCCCCAAAGAT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCTACGGTTTGACGATGAGCAAGGGTGAGATCGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GTGGGGCCCTTCTTGATTTGTCCTTGTGGTACACAGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CTTATCGAACGGCGGAAACCAATCGGAACGGCCGCC
GCCTCAATGAAGGGCCCCTCCAGAGAGAGGGGCAAT	TGGACCTGCCCGCCTGGACCCTGCCCGCCGGCCACTT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GCGAGGGCCAACCAAACGAACTGCCAACAACAAGGAGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGAGTCGCGAAAAGCCTTTAACGAGAGCCACCCCTGCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCCGAGCAGCGTCCCGAGCGGCGTTCAGAGCGGCGCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CTCCGCCGAGGTCGGTGGATTTTACAACGAGTGGGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGTATGGTCGTCCACGGCGCTAGAGGGTAAGACCGGTAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCGGACCAGCCAGATCGCTGGTCGCCGACGCGAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GCCCTCGGCACTGCTGGCGTGTGATCTGATGCGCAC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CACCTTGTAATCAAGTCTGTCAAGTGAGCTGGTAGG
GCCTCAATGAAGGGCCCCTCCAGAAGAAGGGGCAAT	ATCACCCCTTCAGCAGGAAGCCAGTGGACCTTACCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCTGTGCAGTCGGTTTCCACCGTCGATGTCGACAG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGTCCGGTTCGTCGGGGTCTTCGAGCAGGGTGACGCGGGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GCCACGAAGGGTGAGTCGGTGACGGCGCGAGAATAG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ATTCGCCAGGTGAGCGGGAAGGGTGCAAATAGCTA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGTGCGACGCCCAGCCGGCGCCAACGATATTGTGGTC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTCAACGACCGGCCCGACGCCTTGAGCTCCTTGACGAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGTGAGCTCTGACTGGATTGTGTTCATGTGGAGACC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AGGAGGCGTCCGCCATCCCTTTTCCAGCCAGGCATCGG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CTGGAGGCGCTGCGAGGTGCCGCCAGACAAGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGCTTGCTCAGAGCTTGTCTCTTTTGGTCGTTTTGC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGCTTGCTCAGAGCTTGTCTCTTTTGGTCGTTTTGC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGCTGTGCAATGGCAGTCACTCCCGGTGGTCTTGCCT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TCTCCGCCACCAAGGCCAAGGAGACCCTGCCGCCCGACGT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGTTTCTCCCTAAAACTTTAGTGTATATCCGACTTCT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CAGAAGTCTGTGCCGTCCGGGCGAACAGACTTAAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AATAGGTGCGGTTCATGCCGCGACCGCGACGCTCGG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CAGTCGATCCGTCTGTCGAAGGACTCGAACGGCCA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGGTTTACGCGAGGGTGAGCATCAATGCCTACCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGGATGGTTGGAGATGGTCCGCCCGATCACATCGAC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GATTACGGCTTTTCCGTTCAGGAATTAGCGGACGGT
GCCTCAATGAAGGGCCCCTCCAGGAGGAGGGGCAAT	CTCCTGCTCGTGGAGCCTGTAGGTGCCATGTGGACCCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010341.1\|WP_013160299.1\|422587_425203_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
NZ_CP010341.1\|WP_026138135.1\|400280_401606_-\|ISL3-like-element-ISPfr2-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP010341.1\|WP_060759138.1\|430511_431522_+\|ArsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
NZ_CP010341.1\|WP_080774584.1\|402272_405152_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|197297
NZ_CP010341.1\|WP_013160297.1\|419998_421600_-\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP010341.1\|WP_044635949.1\|411682_412198_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010341.1\|WP_129931507.1\|410059_410299_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010341.1\|WP_044635951.1\|421589_422591_-\|hypothetical-protein	csb3	cd09764_csb3_CAS-I-U	gnl\|CDD\|187733
NZ_CP010341.1\|WP_144406025.1\|405707_406709_+\|IS481-like-element-ISPfr17-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP010341.1\|WP_013160286.1\|408484_408760_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010341.1\|WP_013160296.1\|419699_420002_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP010341.1\|WP_044635953.1\|426742_427942_-\|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
NZ_CP010341.1\|WP_044635864.1\|416461_417769_+\|ISL3-like-element-ISPfr1-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP010341.1\|WP_044635947.1\|409217_409967_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NZ_CP010341.1\|WP_044635954.1\|430218_430506_+\|DUF2249-domain-containing-protein	unknown	unknown	gnl\|CDD\|370777
NZ_CP010341.1\|WP_055345783.1\|428470_429745_+\|threonine-ammonia-lyase-IlvA	unknown	unknown	gnl\|CDD\|236318
NZ_CP010341.1\|WP_044635952.1\|425199_426741_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NZ_CP010341.1\|WP_013160285.1\|406771_408088_-\|anaerobic-C4-dicarboxylate-transporter	unknown	unknown	gnl\|CDD\|237115
NZ_CP010341.1\|WP_044635944.1\|398848_400156_-\|ISL3-like-element-ISPfr1-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP010341.1\|WP_013160292.1\|412232_412739_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010341.1\|WP_013160299.1\|422587_425203_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	1.75868e-80
NZ_CP010341.1\|WP_026138135.1\|400280_401606_-\|ISL3-like-element-ISPfr2-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	2.50507e-76
NZ_CP010341.1\|WP_080774584.1\|402272_405152_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|197297	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. Other characterized members of the superfamily that have a related domain architecture ( containing a DEAD/DEAH box helicase domain), include the DNA/RNA helicase superfamily II (SF2) and Res-subunit of type III restriction endonucleases. In addition to the helicase-like region, members of this subfamily also contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in the N-terminal putative catalytic domain. The HKD motif characterizes the phospholipase D (PLD, EC 3.1.4.4) superfamily.	1.03864e-75
NZ_CP010341.1\|WP_044635947.1\|409217_409967_+\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	3.29293e-31
NZ_CP010341.1\|WP_044635951.1\|421589_422591_-\|hypothetical-protein	gnl\|CDD\|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	1.00232e-143
NZ_CP010341.1\|WP_144406025.1\|405707_406709_+\|IS481-like-element-ISPfr17-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	3.55772e-22
NZ_CP010341.1\|WP_013160296.1\|419699_420002_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.51478e-21
NZ_CP010341.1\|WP_044635953.1\|426742_427942_-\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	6.38971e-31
NZ_CP010341.1\|WP_044635864.1\|416461_417769_+\|ISL3-like-element-ISPfr1-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	2.31683e-77
NZ_CP010341.1\|WP_013160297.1\|419998_421600_-\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.95656e-93
NZ_CP010341.1\|WP_044635954.1\|430218_430506_+\|DUF2249-domain-containing-protein	gnl\|CDD\|370777	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249). Members of this family of hypothetical bacterial proteins have no known function.	3.43957e-22
NZ_CP010341.1\|WP_055345783.1\|428470_429745_+\|threonine-ammonia-lyase-IlvA	gnl\|CDD\|236318	PRK08639, PRK08639, threonine dehydratase; Validated.	0
NZ_CP010341.1\|WP_060759138.1\|430511_431522_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	1.48445e-05
NZ_CP010341.1\|WP_013160285.1\|406771_408088_-\|anaerobic-C4-dicarboxylate-transporter	gnl\|CDD\|237115	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed.	0
NZ_CP010341.1\|WP_044635944.1\|398848_400156_-\|ISL3-like-element-ISPfr1-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	2.25577e-76
NZ_CP010341.1\|WP_044635952.1\|425199_426741_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.68159e-127

>NZ_CP010341.1|WP_013160292.1|412232_412739_-|hypothetical-protein
MIENPGQTNNQPQSDDTERPEVRLVPVQLEINGSYALQLEDDKKFHPVAQDIVGLCELLVRRSEDLGAPLLPSIDQSDSANEVALANAAPFPIISDRYGTLEVPVDMAGFLKSMDESTPYTGELLGTDLMHIGQMMKELSIKTGIQWVPMPVGKAENGELGTMTPDQQ
>NZ_CP010341.1|WP_044635949.1|411682_412198_+|hypothetical-protein
MSDTPRPSHDPRPKVTLRTVLIAIGVVLVVLIAGAIVVTTRNASTPDTNPSPVAPAPVSTTSSGAVASRAAMVEEEKPDSEHVIEFRATTNRPGFVVYRVTDGEGTRADMTQSWSHEERVKNLDGVFLKVKSLSGGDADAEVSCQILVDGQVWGSDSGSGRGAFSKCLLRG
>NZ_CP010341.1|WP_129931507.1|410059_410299_+|hypothetical-protein
MSTTPDTEPTTTGRAHEKITSTELVPIAPAVKHHLSATPPATRTSPSRGHLEALREQLAQGDLSIDDAARLTREYIDNI
>NZ_CP010341.1|WP_044635947.1|409217_409967_+|HNH-endonuclease
MAHHRSAGWLALAAFVAASVLVGCDPPATTGSPSTSASSSVATSTPTPSITQTSAAGEAVATGDAEAVRQLLNTLPVKGRAPKTGYERSEFGTAWKDVDHNGCDTRNDVLARDLTDKVYKPGTHDCVVASGVLHDPYTGTTIHFTRGQNTSTAVQIDHIVALSDAWQKGAQQLSADLRTQLANDPLNLLAVDGPTNQQKSDGDAATWLPPNKAFRCTYVTHQVQVKAKYSLWVTQAEKAAITNQLGTCS
>NZ_CP010341.1|WP_013160286.1|408484_408760_-|hypothetical-protein
MDQPRVPLTTSYEMLEVLTTKFGALLDGYEAQGVRAFEEAGEPYDALGLLLSDLHFKGVKIPKEYADKIWSITDPEDVEDFAMYLGPRPKA
>NZ_CP010341.1|WP_013160285.1|406771_408088_-|anaerobic-C4-dicarboxylate-transporter
MIWVHLLILLIFVFLGSRLGGVGIGLAGGAGVLVLVATGLHTDAAKDVPWSVIGIIIPVICTIAALQVAGGMDYLVHLTEVLLRRHPKQITYLAPFVTFMLSLLCGTGHTAYSVIPVIVDVAKEHDVRPSRPLSIAVVASQVAVASSPISAATVAMTTVVEPMGIGYLQVLAVTIPTTFIGCAVGAIVASRQGKELKDDPIYQEREAKGLVSHSAAAAAPDFKPAPSAIPSLLIFLASLVVIVVWATISSKQLGIMSNPPINSSSAIMVIMMTTAAIICVLSRKPVSEVTTQSTFRAGMTAAICIMGVAWLGTTFFNNYMSQITTVGSSLLHQVPWLYAVILYFCAPLLFSHAATTAAFMPVAAKIGLTATTMLACYPAVANYYLLPNYPTTVAAIEMDDTGSTRVGRFVLNHPFVIPGTVSIAVAVALGFFWAPIVA
>NZ_CP010341.1|WP_144406025.1|405707_406709_+|IS481-like-element-ISPfr17-family-transposase
MTHANAPLTPEGRRRLAVLVVEQGWSLRRAAERFQCSPATVKRWADRYRAGLPLIDRSSRPTSSPNRLSRKTEHRIVALRFTRRWGPHRIAYHLRLHRSTVGRVLARYKMPKLINIDQATGLPVRRPKPTRYEVAAPGQLVHVDIKKQGRIPDGGGWRAHGRGSMQDRHAGVARDKAARAGAAGSRGYRYLHHAVDDHSRIAYSEILDDERKETAAGFWTRANAFFAGLGVTVTAVMTDNGSCYRSGAFADALGDEVKHKWTRPYRPQTNGKVERFNRTLAVEWAYAKPYASEAERAAAYETWLHHYNHHRPHTGIGGQTPSARVHNVTGKYI
>NZ_CP010341.1|WP_080774584.1|402272_405152_-|DEAD/DEAH-box-helicase
MELQSLTDGRPRYATRPLTPLNESTLITNARRDESLAQALNLELATADRVDLLCAFVKWSGIQSIMDTLAMLHEQGVPVRLLTTTYMGATDATAIHRLADELGFQVKVNYNTGTTRLHAKSWMIYRNSGFHTAFIGSSNLSHAAMVDGLEWNVRVSAVNELALFSKLGTAFDTYWDDPKFEPYLPGRDDERLATSLKQAVTQPGRHFDAAFLDIQPQPHQRIMLDDLAHERQQDFHRNLVVAATGTGKTVLAALDYLRLCGDKPGSLSLLFVAHRKEILEQARSTYAHVLNDANFGELLVGGEHPTEHRHVFASVQSLSRMNLDALDPTAFDVMVIDEFHHAEAATYRRILDHFQPRELLGLTATPERADGVNVASFFGDRIASELRLWDALDGDLLAPFHYFVQWDDTDLRGVKASGGEYQAGELSRLYTDNDGRSRLVLAAMRHRILDPTRMKALAFCVSVEHAHYMADVLSQAGVPSVALSGQSSREIREAAIRDLREGRLACLCTVDLFNEGIDIPSIDTVIMLRPTQSATIFLQQLGRGLRRAPGKSVLTVLDFVGHQREDFSFEPRLRALTGQGRKQLVDSVEKGFSELPAGCEIQFDKMSQKEVLKNVKRQLATTTLRLVNEFADYARRSASPTEYSLRRFLAESGLTLGSIFGRSKFRGEPVEMTFIRHRAGLATTIDVSPTGAYLRGRVRNFAHVDDPARAQAYVALSSPQGPQWDNLGPMQRIAAEMLFYSVWPKGRDQDDQLIGSIRDGLDVLRAHGWFSDELREVMESSVDASRAVFERPGGNLAGTPLVVHGTYRREELLAAIGVGRADGDARMPGDVREGVVWVESTGIGALSVQLEKDSDTFTDSTMYADYAINDTLFHWQSQSATTPGSSSGRRLLGEHAQSFDLALFVRQRGNDDLGKGAPYTFLGLVDLVSYSGSKPISITWRLRRPMPQGLYLAARAAAT
>NZ_CP010341.1|WP_026138135.1|400280_401606_-|ISL3-like-element-ISPfr2-family-transposase
MSDATPPAGFGRPDLTAFARLDGLGLSVTGQRLEPDRAVLACRVVEPDQWCRRCGSEGAARDTVIRRLAHEPLGWRPTVLEVVVRRYRCADCGHVWRQDTSAAAEPRAKLSRTGLRWALEGIVVAHLTVARVAEGLGVAWDTANNAVLAEGKRLLINDPTRFEGVKVIGVDEHVWRHTRRGDKYVTVIIDLTPVRDGAGPARLLDMVEGRSKAAFKTWLADRDDAFRDAVEVVAMDGFTGFKTAAAEEIPDAVTVMDPFHVVRLAGDALDRCRRRVQLAIHGHRGFRDDPLYKSRRTLHTGADLLTDKQSDRLRALFVDDAHVEVEATWGVYQRMIAAYRHEDRQRGRELMEKLITDLSAGVPKVLTELTTLGRTLKKRAADVLAYFERPGTSNGPTEALNGRLEHLRGSALGFRNLTNYIARSLLETGGFRPQLLHPRLG
>NZ_CP010341.1|WP_044635944.1|398848_400156_-|ISL3-like-element-ISPfr1-family-transposase
MSHPTFTTPCLTTFCGLDELGLEAVGQRLDPDRAVIECRVVEPDRWCRECGCEGAPRDTVIRRLAHEPFGHRPTTLLIRVRRYKCCGCGRVWRQDTTAAAPVRAKISRGGLAWGLAGLVLDHLSVTRVAAGLGVSWSAANDAILAEGRRRLIDDPARFEGVTTIGVDEHVWRHTRHGDTYVTVIIDLTPVRDKTGPARLLDMVAGRSKAVFKTWLAARPKPWREGIEVVAMDGFTGFKTAAAEELPDAAPVMDPFHVIRLAGDALENCRRRVQHDVFGRRGMKGDPPYQARRTLLTGAGLLTDKQQARLDALFVDDRHVEVEATWGIYQDMITAYRDKDRGLGRFFLAHTIDKISASVPEQLVEIRKLARTLTQRASDVLGYFDRPGTSNGPTEAINGRLEHLRGTALGFRNLSHYIARSLLEAGGFRPALHPRS
>NZ_CP010341.1|WP_044635864.1|416461_417769_+|ISL3-like-element-ISPfr1-family-transposase
MSHPTFTTPCLTTFCGLDELGLEAVGQRLDPDRAVIECRVVEPDRWCRECGCEGAPRDTVIRRLAHEPFGHRPTTLLIRVRRYKCCGCGRVWRQDTTAAAPVRAKISRGGLAWGLAGLVLDHLSVTRVAAGLGVSWSAANDAILAEGRRRLIDDPARFEGVTTIGVDEHVWRHTRHGDTYVTVIIDLTPVRDKTGPARLLDMVAGRSKAVFKTWLAARPKPWREGIEVVAMDGFTGFKTAAAEELPDAAPVMDPFHVIRLAGDALENCRRRVQHDVFGRRGMKGDPLYQARRTLLTGAGLLTDKQQARLDALFADDRHVEVEATWGIYQDMITAYRDKDRGLGRFFLAHTIDKISASVPEQLVEIRKLARTLTQRASDVLGYFDRPGTSNGPTEAINGRLEHLRGTALGFRNLSHYIARSLLEAGGFRPALHPRS
>NZ_CP010341.1|WP_013160296.1|419699_420002_-|CRISPR-associated-endonuclease-Cas2
MSRRDSHCFLIAYDVPDDRRRTRLATVLKGYGERVQYSVFMVDCPPSHLLVLRHDLTDAMDIDEDSVVICDLGMSTSADAQRITWLGGQRYQSGGRSIII
>NZ_CP010341.1|WP_013160297.1|419998_421600_-|CRISPR-associated-endonuclease-Cas4/Cas1
MSGDDKLPISLVAHTVFCPRRAWLEAQGEQADSYAMTAGTLAHRRVDQPAESRPEVRRAVSVHSESLGITGRCDVVEVSSDGLSVVEYKSTPVRRKAEITPAQAVQVGLQSMCLEEMGHHVTSGVVHFVNHHKDVPVPLGAEAREACRDWVTETRKVVEADSAPPPLLDDSRCNGCSHATICLPDEQVHNGGELKRRISVADPHGEILHAVTPGARLSMRDRQIRITRQGEQLAAVPLERVQGLVLHGNVDVSGALIREILWRRLTIVWCSGRGRVVGWATGAAAPNGQARMHQQALSEVGCLPVARAIVRAKLINQATLLRRNAAAATAPQEIRELSRVAMRVESLPELFAVEGRAAKAYFSEFPLILKSDSAQDFLDEWPGRHGRGAIDPLNAALNYAYGMLLADCVRAIAACGLDPHGGFLHSPSRNKPALALDLMEEFRAPVADSAVITCINNQTLTADMFSHTLGDVRLTRAGIAALTSAYERRVTTDIKHPTFGYPATWRRTMEIQARLLLGFIDGTRSEYIGMTVR
>NZ_CP010341.1|WP_044635951.1|421589_422591_-|hypothetical-protein
MKFEITGTLDTAITHFALVGLANILQEAGAHRVRLWWQDGAVARPTLQWEGPDAGEAVLAHARRHADPACWLQARRPAPEDGHALFSPRLKPPTDDEGWFELEELREHFLDAGLTRLDQRMIVNLGEPGYWVRQDGQPRPDHAASRWEMKTRNRGEEFIGQRLAPLAREVSTWTAGKVLDGLGGRAVNDVVGKNKPDSRTPTGLSSPGPTDNALAWCSLWGISAFTLVPKSIGVSATAGAVPPARSYPRLLVVPVVADPISPVLWTALARSRELLSAFSDDPVRSVDARQLLVRRGVIGACSFPLDKSDNDSAPERTLLRGTLHPFQEDADVW
>NZ_CP010341.1|WP_013160299.1|422587_425203_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MTITLDDFATFFRAVNAGHDPFPWQTALLTGIAGSARWPSAITAPTGSGKSAVVEVHVFLNALYSAGSGPRVPRRLSTVVARRALVDSQADRAQRVADWLDEGDSPLAREMSALLQRLSAADDTPPLVIGHLRGGISLRSTWIDDPSACAVISATPDMWGSRLLLRGYGSSMAARPREGGLLGLDNAVVIDEAHLSRQLVGTARWVSQHNADVAERLGVPGLQVVESSATTRSASPDGIGIGPDDLADPTLRPRLTLPKPVTVVESAAWSGKKATDQYISTLVDQVQDMARTADDGTIGCIVNRVDTALRVAERLGDDCPCWVGPTRPLDLAQLKRSYPALLGLDTAPRQAMPRFLVATQTVEVGVDLDLSGLVTELAPADSLTQRFGRVNRRGLRDSGPLTVVAPPQDKLAEQLPYSLDDLADALQWLGGLPDTEGASPQAVADHPPKARTPERAIVKLPHVGDVMRWDATADLMWADEDLELWVRDSLEPDDAQVGIVVRQPLPDEDAEVIPLLAATPVDQAEVFPAGIAVARAVVDRILEGRGDHARAFLSRADEITPLGADDASAIRPGDVVIVDAGHALTRHGVVVSDANRAESLETRWGTPDVAVIQKDSADSQWLSALADLTAEDAQTEYSDLGGEGLLTLGPPNALGELPWIVVTSQKTAEEDEELRQEWSASDQPVLLTAHQSNVAGRARRLGERVALDPELTAALELAGAHHDDGKADPRFQHLRLSNYSSLVLAKSEHRSSQAVVRRQFAGGELPRGWRHELRSVAVSWAEVSLAPHGPLVARLIGTSHGRGRILPQPDAASLATPSDPAEVNERVAALFGSGEWPELMAATSTTYGVWGCAYLEALLRAADCQVSKEGS
>NZ_CP010341.1|WP_044635952.1|425199_426741_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MSPLTIRAVFPLGVFQGHRADGSPDRLPDTARLFSALVNAAGQGSEAIAVKGRLEPSSESTAALSWLEKHPPTMIRIPNHVPVSPDRRPDAYRKTGTVQGPKKSPAMRIGARQISTGTAIDDCVGWFWADAPSEVQETVGRLCADVSCLGEDDSPVILTLDQFVPTHELVASTQQLRPIGLAVRTPGPGRLDELIRAHHEAFPPKMPSAAQDSPSFSEMPRGSRVPTEGLRVLRYKSPTPPPADSPWPLAMLLPLSAHIALEDGLTWCVAMHRMLISRLGDGAPAIVTGHYARGASQPANRVAVQYLPPTLLSHRAESGDFPHGAIALLLPASIAAEDRGEIVRALNSPRLGLWSSAGRVTLGTPLRIDASQFWPTPQPGWRRQWRTLDGMVPETRRQPRHELLGAWGFPQSALLSVGHVFREELALTRANTYWETVSVVTDRGVQILGTHLIPDSEVSRYVHKVPRSIGVVQPYSAQLDLADLVNDRALLALGQARHLGGGLLVPMDSPEVS
>NZ_CP010341.1|WP_044635953.1|426742_427942_-|type-I-U-CRISPR-associated-protein-Cas7
MTDLTYSDLEAACHAGGASVLSSVTELAPAAGPQAGIAPARYVQGRDGTYAYETRFIGGEPSSVVVVDSKASQLNRVEDAISLAIEEGDPSLTRMPSIRVDYETLSATDYQLPHRFSDGHIRFGTIDGEVTTKYPAYVAARNASPANARALLELSPVSLAFGAWDSTRKAHQARFRSCLVGEIIGQLADQTEAGRKPPRRGSARKDDIAPSVQLNEKDMLTLLATQEDEMSPTTVDKITKDAKKAKNKPTSASVLGLGAIPPSLDGLGFVSCRRIIRSHVLSFSALRQLRFGADNAGNVACRALLAALSLHGLALSDQELELRANCDLVEAGDPVVTLDGRRGTHTELEPLVPEVTGPILATAIERAVATAGIRWDGQVLEVTGNPIILAGATADADED
>NZ_CP010341.1|WP_055345783.1|428470_429745_+|threonine-ammonia-lyase-IlvA
MTTTEVSTLAHLVDQAAEGLAGVARVTPLQYNERISSTSGCRVWLKREDLQPVRSYKLRGAYTFISKLSDDEKRAGVICASAGNHGQGVAWACARLGITGTVHVPSTTPRQKRDRIRFFGGDHVRLVVGGDTYDDAARAAQVEADRTGATMVPAFDDPLIASGQGTVARELVEQLGHAPDVLVVPVGGGGLLSGCGAWMRENHPETRIIAVEPAGAAGLAAAMDAGRPVRLDHIDSFVDGAAVARVGDFTFKIARQLAPDLIAIPEGQVCTEMLSMYQVDGIIAEPAGALAASALSVHPMDTTLGIDPSQEIAIIVSGGNNDVSRYAEVVERSGVHEGRRRYFLVNFPQEPGALRRFLNEVLGPDDDIIVFDYTKHSNRDTGPALVGIELGDPTSFAELWTRMEESPLNVEVLEPDTAIYRMLV
>NZ_CP010341.1|WP_044635954.1|430218_430506_+|DUF2249-domain-containing-protein
MTDLPITQTHHCTCAEGETNTPELDASAIPHAIRHAAILGALQGLGHNESMILVAPHNPLPLLDQIDSMWPDVFSLEYVQEGPDAWKIRFTRVAA
>NZ_CP010341.1|WP_060759138.1|430511_431522_+|ArsR-family-transcriptional-regulator
MDGQTGLVRRAAVLGVGATDGAYPSDRGAPLDPQCQRLMDALLTAPGPMTVAQLGVDAEMRPNTVRFHLAHLGDAGLVSGVSARTTTRGRPGVLYRATARAFDSGPQHPRLLTEVLMHHFLADAATPPPSVEDPQRPTTVWERARRAGRAWSSHVETLPGGSPAHGGAGPEHVTDGTAQFDALLTQLGNWGLAPNRIRDPGVPDGSAVPDESAAASTHSPVGSTIGPGPVSPDPAAAQRDHLPDRIRIGLNRCPFAHEASECPDLVCGVHAGIIDGLLAQLGGSWRVARLTPHASAGQCLLDAELTHPALQAPPCPAAAYPDSVHRAGRGGTTPRA

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Crispr_ID: NZ_CP010341_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010341_2

417819-419521

Unclear

Consensus_repeat	Method
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	PILER-CR
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CRISPRCasFinder
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CRT

23 spacers

cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

The CRISPR arrays of NZ_CP010341_2

>merge|NZ_CP010341|2|417819-419521|PILER-CR,CRISPRCasFinder,CRT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGGTTTCCTGTGAGCGTGTTGTAGGCGCTCTGATAGCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATACCGAACATGCCCTCAGCGCCATAACGCGACTTCGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTCTGGCTGTGGCACCTATGCGAAGGATGCCTTGGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATATTTTGCTCACCCCCTTTCATCAAAAAACTGAATGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATAATCCTTTCTCCCCTTTCACGCAGTTCGATGAATGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGGTGGAGCTTCCCCCTTGACATCGCGAATACTATGGCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTCGCAAGCTATCCAGGCGAACGCCACCATGACGTCCCGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATATGAGGACCTTCTCGAAGCTCGGGTTGATCAGCAAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTGACCTCGTCGGCACCGAACTTCGTCGCCACCCAGTTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGATGGAACGAACAATGCTCGAGCGAGACCTGGAGTTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGAACCGTGTGGCGACACATCGAGGAGCACGGTGACGGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCGGCCGCGAGGGCTTCGAGTATCAGGCGAGCTTCGGTGAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTCTAGCCAGACGATCACGATCTGTGGCGGCATCGTCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCCCATCACCTCCGACACGTAGGCCGTCCATGACTTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGTCTCAGGGGCGCAGATGATGACTCGTCGTCTTCATTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGTGGGCCAGCGTGGTGGTCAGCGACTTGACCGACGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATAATCTGAAGCCATAGAGAGTCGCATGCCGCCCTCAGAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGATCCACATGGTAGACCGGCGACTCATGATGCCCATCCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCGGGGTGTCGCCTGGGATGCCGCTCGATGTTCCGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCCGCATCTATGACACCCAGTTCGCCACGGAATACATGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCAGTTCGATCATTACATCGAAGGTCTTATCGAAAAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGGTTGCGTTACTCGTGCGTCCTGGCACTTGGCATTGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTGAGGACCAGAGGCGTTCCCATACTAGTCGTAGCTTCAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT

>NZ_CP010341|2|2|417819-419521|PILER-CR
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGGTTTCCTGTGAGCGTGTTGTAGGCGCTCTGATAGCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ACCGAACATGCCCTCAGCGCCATAACGCGACTTCGC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TCTGGCTGTGGCACCTATGCGAAGGATGCCTTGG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ATTTTGCTCACCCCCTTTCATCAAAAAACTGAAT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AATCCTTTCTCCCCTTTCACGCAGTTCGATGAATG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGGTGGAGCTTCCCCCTTGACATCGCGAATACTATGGCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TCGCAAGCTATCCAGGCGAACGCCACCATGACGTCCCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ATGAGGACCTTCTCGAAGCTCGGGTTGATCAGCAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGACCTCGTCGGCACCGAACTTCGTCGCCACCCAGTT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GATGGAACGAACAATGCTCGAGCGAGACCTGGAGTT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GAACCGTGTGGCGACACATCGAGGAGCACGGTGACGG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CGGCCGCGAGGGCTTCGAGTATCAGGCGAGCTTCGGTGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TCTAGCCAGACGATCACGATCTGTGGCGGCATCGTC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCCATCACCTCCGACACGTAGGCCGTCCATGACTT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GTCTCAGGGGCGCAGATGATGACTCGTCGTCTTCATT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGTGGGCCAGCGTGGTGGTCAGCGACTTGACCGACGC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AATCTGAAGCCATAGAGAGTCGCATGCCGCCCTCAGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GATCCACATGGTAGACCGGCGACTCATGATGCCCATCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CGGGGTGTCGCCTGGGATGCCGCTCGATGTTCCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCGCATCTATGACACCCAGTTCGCCACGGAATACAT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CAGTTCGATCATTACATCGAAGGTCTTATCGAAAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGTTGCGTTACTCGTGCGTCCTGGCACTTGGCATTG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGAGGACCAGAGGCGTTCCCATACTAGTCGTAGCTTCA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT

>NZ_CP010341|2|2|417819-419521|CRISPRCasFinder
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGGTTTCCTGTGAGCGTGTTGTAGGCGCTCTGATAGCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ACCGAACATGCCCTCAGCGCCATAACGCGACTTCGC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TCTGGCTGTGGCACCTATGCGAAGGATGCCTTGG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ATTTTGCTCACCCCCTTTCATCAAAAAACTGAAT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AATCCTTTCTCCCCTTTCACGCAGTTCGATGAATG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGGTGGAGCTTCCCCCTTGACATCGCGAATACTATGGCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TCGCAAGCTATCCAGGCGAACGCCACCATGACGTCCCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ATGAGGACCTTCTCGAAGCTCGGGTTGATCAGCAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGACCTCGTCGGCACCGAACTTCGTCGCCACCCAGTT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GATGGAACGAACAATGCTCGAGCGAGACCTGGAGTT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GAACCGTGTGGCGACACATCGAGGAGCACGGTGACGG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CGGCCGCGAGGGCTTCGAGTATCAGGCGAGCTTCGGTGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TCTAGCCAGACGATCACGATCTGTGGCGGCATCGTC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCCATCACCTCCGACACGTAGGCCGTCCATGACTT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GTCTCAGGGGCGCAGATGATGACTCGTCGTCTTCATT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGTGGGCCAGCGTGGTGGTCAGCGACTTGACCGACGC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AATCTGAAGCCATAGAGAGTCGCATGCCGCCCTCAGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GATCCACATGGTAGACCGGCGACTCATGATGCCCATCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CGGGGTGTCGCCTGGGATGCCGCTCGATGTTCCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCGCATCTATGACACCCAGTTCGCCACGGAATACAT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CAGTTCGATCATTACATCGAAGGTCTTATCGAAAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGTTGCGTTACTCGTGCGTCCTGGCACTTGGCATTG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGAGGACCAGAGGCGTTCCCATACTAGTCGTAGCTTCA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT

>NZ_CP010341|2|2|417819-419521|CRT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGGTTTCCTGTGAGCGTGTTGTAGGCGCTCTGATAGCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ACCGAACATGCCCTCAGCGCCATAACGCGACTTCGC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TCTGGCTGTGGCACCTATGCGAAGGATGCCTTGG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ATTTTGCTCACCCCCTTTCATCAAAAAACTGAAT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AATCCTTTCTCCCCTTTCACGCAGTTCGATGAATG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGGTGGAGCTTCCCCCTTGACATCGCGAATACTATGGCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TCGCAAGCTATCCAGGCGAACGCCACCATGACGTCCCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	ATGAGGACCTTCTCGAAGCTCGGGTTGATCAGCAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGACCTCGTCGGCACCGAACTTCGTCGCCACCCAGTT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GATGGAACGAACAATGCTCGAGCGAGACCTGGAGTT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GAACCGTGTGGCGACACATCGAGGAGCACGGTGACGG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CGGCCGCGAGGGCTTCGAGTATCAGGCGAGCTTCGGTGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TCTAGCCAGACGATCACGATCTGTGGCGGCATCGTC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCCATCACCTCCGACACGTAGGCCGTCCATGACTT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GTCTCAGGGGCGCAGATGATGACTCGTCGTCTTCATT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TGTGGGCCAGCGTGGTGGTCAGCGACTTGACCGACGC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	AATCTGAAGCCATAGAGAGTCGCATGCCGCCCTCAGA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GATCCACATGGTAGACCGGCGACTCATGATGCCCATCC
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CGGGGTGTCGCCTGGGATGCCGCTCGATGTTCCG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CCGCATCTATGACACCCAGTTCGCCACGGAATACAT
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	CAGTTCGATCATTACATCGAAGGTCTTATCGAAAA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	GGTTGCGTTACTCGTGCGTCCTGGCACTTGGCATTG
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	TTGAGGACCAGAGGCGTTCCCATACTAGTCGTAGCTTCA
GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010341.1\|WP_013160299.1\|422587_425203_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
NZ_CP010341.1\|WP_026138135.1\|400280_401606_-\|ISL3-like-element-ISPfr2-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP010341.1\|WP_060759138.1\|430511_431522_+\|ArsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
NZ_CP010341.1\|WP_080774584.1\|402272_405152_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|197297
NZ_CP010341.1\|WP_013160297.1\|419998_421600_-\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP010341.1\|WP_044635949.1\|411682_412198_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010341.1\|WP_129931507.1\|410059_410299_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010341.1\|WP_044635951.1\|421589_422591_-\|hypothetical-protein	csb3	cd09764_csb3_CAS-I-U	gnl\|CDD\|187733
NZ_CP010341.1\|WP_144406025.1\|405707_406709_+\|IS481-like-element-ISPfr17-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP010341.1\|WP_013160286.1\|408484_408760_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010341.1\|WP_013160296.1\|419699_420002_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP010341.1\|WP_044635953.1\|426742_427942_-\|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
NZ_CP010341.1\|WP_044635864.1\|416461_417769_+\|ISL3-like-element-ISPfr1-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP010341.1\|WP_044635947.1\|409217_409967_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NZ_CP010341.1\|WP_044635954.1\|430218_430506_+\|DUF2249-domain-containing-protein	unknown	unknown	gnl\|CDD\|370777
NZ_CP010341.1\|WP_055345783.1\|428470_429745_+\|threonine-ammonia-lyase-IlvA	unknown	unknown	gnl\|CDD\|236318
NZ_CP010341.1\|WP_044635952.1\|425199_426741_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NZ_CP010341.1\|WP_013160285.1\|406771_408088_-\|anaerobic-C4-dicarboxylate-transporter	unknown	unknown	gnl\|CDD\|237115
NZ_CP010341.1\|WP_052809072.1\|431596_432874_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010341.1\|WP_013160292.1\|412232_412739_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010341.1\|WP_013160299.1\|422587_425203_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	1.75868e-80
NZ_CP010341.1\|WP_026138135.1\|400280_401606_-\|ISL3-like-element-ISPfr2-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	2.50507e-76
NZ_CP010341.1\|WP_080774584.1\|402272_405152_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|197297	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. Other characterized members of the superfamily that have a related domain architecture ( containing a DEAD/DEAH box helicase domain), include the DNA/RNA helicase superfamily II (SF2) and Res-subunit of type III restriction endonucleases. In addition to the helicase-like region, members of this subfamily also contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in the N-terminal putative catalytic domain. The HKD motif characterizes the phospholipase D (PLD, EC 3.1.4.4) superfamily.	1.03864e-75
NZ_CP010341.1\|WP_044635947.1\|409217_409967_+\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	3.29293e-31
NZ_CP010341.1\|WP_044635951.1\|421589_422591_-\|hypothetical-protein	gnl\|CDD\|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	1.00232e-143
NZ_CP010341.1\|WP_144406025.1\|405707_406709_+\|IS481-like-element-ISPfr17-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	3.55772e-22
NZ_CP010341.1\|WP_013160296.1\|419699_420002_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.51478e-21
NZ_CP010341.1\|WP_044635953.1\|426742_427942_-\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	6.38971e-31
NZ_CP010341.1\|WP_044635864.1\|416461_417769_+\|ISL3-like-element-ISPfr1-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	2.31683e-77
NZ_CP010341.1\|WP_013160297.1\|419998_421600_-\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.95656e-93
NZ_CP010341.1\|WP_044635954.1\|430218_430506_+\|DUF2249-domain-containing-protein	gnl\|CDD\|370777	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249). Members of this family of hypothetical bacterial proteins have no known function.	3.43957e-22
NZ_CP010341.1\|WP_055345783.1\|428470_429745_+\|threonine-ammonia-lyase-IlvA	gnl\|CDD\|236318	PRK08639, PRK08639, threonine dehydratase; Validated.	0
NZ_CP010341.1\|WP_060759138.1\|430511_431522_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	1.48445e-05
NZ_CP010341.1\|WP_013160285.1\|406771_408088_-\|anaerobic-C4-dicarboxylate-transporter	gnl\|CDD\|237115	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed.	0
NZ_CP010341.1\|WP_044635952.1\|425199_426741_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.68159e-127

>NZ_CP010341.1|WP_044635864.1|416461_417769_+|ISL3-like-element-ISPfr1-family-transposase
MSHPTFTTPCLTTFCGLDELGLEAVGQRLDPDRAVIECRVVEPDRWCRECGCEGAPRDTVIRRLAHEPFGHRPTTLLIRVRRYKCCGCGRVWRQDTTAAAPVRAKISRGGLAWGLAGLVLDHLSVTRVAAGLGVSWSAANDAILAEGRRRLIDDPARFEGVTTIGVDEHVWRHTRHGDTYVTVIIDLTPVRDKTGPARLLDMVAGRSKAVFKTWLAARPKPWREGIEVVAMDGFTGFKTAAAEELPDAAPVMDPFHVIRLAGDALENCRRRVQHDVFGRRGMKGDPLYQARRTLLTGAGLLTDKQQARLDALFADDRHVEVEATWGIYQDMITAYRDKDRGLGRFFLAHTIDKISASVPEQLVEIRKLARTLTQRASDVLGYFDRPGTSNGPTEAINGRLEHLRGTALGFRNLSHYIARSLLEAGGFRPALHPRS
>NZ_CP010341.1|WP_013160292.1|412232_412739_-|hypothetical-protein
MIENPGQTNNQPQSDDTERPEVRLVPVQLEINGSYALQLEDDKKFHPVAQDIVGLCELLVRRSEDLGAPLLPSIDQSDSANEVALANAAPFPIISDRYGTLEVPVDMAGFLKSMDESTPYTGELLGTDLMHIGQMMKELSIKTGIQWVPMPVGKAENGELGTMTPDQQ
>NZ_CP010341.1|WP_044635949.1|411682_412198_+|hypothetical-protein
MSDTPRPSHDPRPKVTLRTVLIAIGVVLVVLIAGAIVVTTRNASTPDTNPSPVAPAPVSTTSSGAVASRAAMVEEEKPDSEHVIEFRATTNRPGFVVYRVTDGEGTRADMTQSWSHEERVKNLDGVFLKVKSLSGGDADAEVSCQILVDGQVWGSDSGSGRGAFSKCLLRG
>NZ_CP010341.1|WP_129931507.1|410059_410299_+|hypothetical-protein
MSTTPDTEPTTTGRAHEKITSTELVPIAPAVKHHLSATPPATRTSPSRGHLEALREQLAQGDLSIDDAARLTREYIDNI
>NZ_CP010341.1|WP_044635947.1|409217_409967_+|HNH-endonuclease
MAHHRSAGWLALAAFVAASVLVGCDPPATTGSPSTSASSSVATSTPTPSITQTSAAGEAVATGDAEAVRQLLNTLPVKGRAPKTGYERSEFGTAWKDVDHNGCDTRNDVLARDLTDKVYKPGTHDCVVASGVLHDPYTGTTIHFTRGQNTSTAVQIDHIVALSDAWQKGAQQLSADLRTQLANDPLNLLAVDGPTNQQKSDGDAATWLPPNKAFRCTYVTHQVQVKAKYSLWVTQAEKAAITNQLGTCS
>NZ_CP010341.1|WP_013160286.1|408484_408760_-|hypothetical-protein
MDQPRVPLTTSYEMLEVLTTKFGALLDGYEAQGVRAFEEAGEPYDALGLLLSDLHFKGVKIPKEYADKIWSITDPEDVEDFAMYLGPRPKA
>NZ_CP010341.1|WP_013160285.1|406771_408088_-|anaerobic-C4-dicarboxylate-transporter
MIWVHLLILLIFVFLGSRLGGVGIGLAGGAGVLVLVATGLHTDAAKDVPWSVIGIIIPVICTIAALQVAGGMDYLVHLTEVLLRRHPKQITYLAPFVTFMLSLLCGTGHTAYSVIPVIVDVAKEHDVRPSRPLSIAVVASQVAVASSPISAATVAMTTVVEPMGIGYLQVLAVTIPTTFIGCAVGAIVASRQGKELKDDPIYQEREAKGLVSHSAAAAAPDFKPAPSAIPSLLIFLASLVVIVVWATISSKQLGIMSNPPINSSSAIMVIMMTTAAIICVLSRKPVSEVTTQSTFRAGMTAAICIMGVAWLGTTFFNNYMSQITTVGSSLLHQVPWLYAVILYFCAPLLFSHAATTAAFMPVAAKIGLTATTMLACYPAVANYYLLPNYPTTVAAIEMDDTGSTRVGRFVLNHPFVIPGTVSIAVAVALGFFWAPIVA
>NZ_CP010341.1|WP_144406025.1|405707_406709_+|IS481-like-element-ISPfr17-family-transposase
MTHANAPLTPEGRRRLAVLVVEQGWSLRRAAERFQCSPATVKRWADRYRAGLPLIDRSSRPTSSPNRLSRKTEHRIVALRFTRRWGPHRIAYHLRLHRSTVGRVLARYKMPKLINIDQATGLPVRRPKPTRYEVAAPGQLVHVDIKKQGRIPDGGGWRAHGRGSMQDRHAGVARDKAARAGAAGSRGYRYLHHAVDDHSRIAYSEILDDERKETAAGFWTRANAFFAGLGVTVTAVMTDNGSCYRSGAFADALGDEVKHKWTRPYRPQTNGKVERFNRTLAVEWAYAKPYASEAERAAAYETWLHHYNHHRPHTGIGGQTPSARVHNVTGKYI
>NZ_CP010341.1|WP_080774584.1|402272_405152_-|DEAD/DEAH-box-helicase
MELQSLTDGRPRYATRPLTPLNESTLITNARRDESLAQALNLELATADRVDLLCAFVKWSGIQSIMDTLAMLHEQGVPVRLLTTTYMGATDATAIHRLADELGFQVKVNYNTGTTRLHAKSWMIYRNSGFHTAFIGSSNLSHAAMVDGLEWNVRVSAVNELALFSKLGTAFDTYWDDPKFEPYLPGRDDERLATSLKQAVTQPGRHFDAAFLDIQPQPHQRIMLDDLAHERQQDFHRNLVVAATGTGKTVLAALDYLRLCGDKPGSLSLLFVAHRKEILEQARSTYAHVLNDANFGELLVGGEHPTEHRHVFASVQSLSRMNLDALDPTAFDVMVIDEFHHAEAATYRRILDHFQPRELLGLTATPERADGVNVASFFGDRIASELRLWDALDGDLLAPFHYFVQWDDTDLRGVKASGGEYQAGELSRLYTDNDGRSRLVLAAMRHRILDPTRMKALAFCVSVEHAHYMADVLSQAGVPSVALSGQSSREIREAAIRDLREGRLACLCTVDLFNEGIDIPSIDTVIMLRPTQSATIFLQQLGRGLRRAPGKSVLTVLDFVGHQREDFSFEPRLRALTGQGRKQLVDSVEKGFSELPAGCEIQFDKMSQKEVLKNVKRQLATTTLRLVNEFADYARRSASPTEYSLRRFLAESGLTLGSIFGRSKFRGEPVEMTFIRHRAGLATTIDVSPTGAYLRGRVRNFAHVDDPARAQAYVALSSPQGPQWDNLGPMQRIAAEMLFYSVWPKGRDQDDQLIGSIRDGLDVLRAHGWFSDELREVMESSVDASRAVFERPGGNLAGTPLVVHGTYRREELLAAIGVGRADGDARMPGDVREGVVWVESTGIGALSVQLEKDSDTFTDSTMYADYAINDTLFHWQSQSATTPGSSSGRRLLGEHAQSFDLALFVRQRGNDDLGKGAPYTFLGLVDLVSYSGSKPISITWRLRRPMPQGLYLAARAAAT
>NZ_CP010341.1|WP_026138135.1|400280_401606_-|ISL3-like-element-ISPfr2-family-transposase
MSDATPPAGFGRPDLTAFARLDGLGLSVTGQRLEPDRAVLACRVVEPDQWCRRCGSEGAARDTVIRRLAHEPLGWRPTVLEVVVRRYRCADCGHVWRQDTSAAAEPRAKLSRTGLRWALEGIVVAHLTVARVAEGLGVAWDTANNAVLAEGKRLLINDPTRFEGVKVIGVDEHVWRHTRRGDKYVTVIIDLTPVRDGAGPARLLDMVEGRSKAAFKTWLADRDDAFRDAVEVVAMDGFTGFKTAAAEEIPDAVTVMDPFHVVRLAGDALDRCRRRVQLAIHGHRGFRDDPLYKSRRTLHTGADLLTDKQSDRLRALFVDDAHVEVEATWGVYQRMIAAYRHEDRQRGRELMEKLITDLSAGVPKVLTELTTLGRTLKKRAADVLAYFERPGTSNGPTEALNGRLEHLRGSALGFRNLTNYIARSLLETGGFRPQLLHPRLG
>NZ_CP010341.1|WP_013160296.1|419699_420002_-|CRISPR-associated-endonuclease-Cas2
MSRRDSHCFLIAYDVPDDRRRTRLATVLKGYGERVQYSVFMVDCPPSHLLVLRHDLTDAMDIDEDSVVICDLGMSTSADAQRITWLGGQRYQSGGRSIII
>NZ_CP010341.1|WP_013160297.1|419998_421600_-|CRISPR-associated-endonuclease-Cas4/Cas1
MSGDDKLPISLVAHTVFCPRRAWLEAQGEQADSYAMTAGTLAHRRVDQPAESRPEVRRAVSVHSESLGITGRCDVVEVSSDGLSVVEYKSTPVRRKAEITPAQAVQVGLQSMCLEEMGHHVTSGVVHFVNHHKDVPVPLGAEAREACRDWVTETRKVVEADSAPPPLLDDSRCNGCSHATICLPDEQVHNGGELKRRISVADPHGEILHAVTPGARLSMRDRQIRITRQGEQLAAVPLERVQGLVLHGNVDVSGALIREILWRRLTIVWCSGRGRVVGWATGAAAPNGQARMHQQALSEVGCLPVARAIVRAKLINQATLLRRNAAAATAPQEIRELSRVAMRVESLPELFAVEGRAAKAYFSEFPLILKSDSAQDFLDEWPGRHGRGAIDPLNAALNYAYGMLLADCVRAIAACGLDPHGGFLHSPSRNKPALALDLMEEFRAPVADSAVITCINNQTLTADMFSHTLGDVRLTRAGIAALTSAYERRVTTDIKHPTFGYPATWRRTMEIQARLLLGFIDGTRSEYIGMTVR
>NZ_CP010341.1|WP_044635951.1|421589_422591_-|hypothetical-protein
MKFEITGTLDTAITHFALVGLANILQEAGAHRVRLWWQDGAVARPTLQWEGPDAGEAVLAHARRHADPACWLQARRPAPEDGHALFSPRLKPPTDDEGWFELEELREHFLDAGLTRLDQRMIVNLGEPGYWVRQDGQPRPDHAASRWEMKTRNRGEEFIGQRLAPLAREVSTWTAGKVLDGLGGRAVNDVVGKNKPDSRTPTGLSSPGPTDNALAWCSLWGISAFTLVPKSIGVSATAGAVPPARSYPRLLVVPVVADPISPVLWTALARSRELLSAFSDDPVRSVDARQLLVRRGVIGACSFPLDKSDNDSAPERTLLRGTLHPFQEDADVW
>NZ_CP010341.1|WP_013160299.1|422587_425203_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MTITLDDFATFFRAVNAGHDPFPWQTALLTGIAGSARWPSAITAPTGSGKSAVVEVHVFLNALYSAGSGPRVPRRLSTVVARRALVDSQADRAQRVADWLDEGDSPLAREMSALLQRLSAADDTPPLVIGHLRGGISLRSTWIDDPSACAVISATPDMWGSRLLLRGYGSSMAARPREGGLLGLDNAVVIDEAHLSRQLVGTARWVSQHNADVAERLGVPGLQVVESSATTRSASPDGIGIGPDDLADPTLRPRLTLPKPVTVVESAAWSGKKATDQYISTLVDQVQDMARTADDGTIGCIVNRVDTALRVAERLGDDCPCWVGPTRPLDLAQLKRSYPALLGLDTAPRQAMPRFLVATQTVEVGVDLDLSGLVTELAPADSLTQRFGRVNRRGLRDSGPLTVVAPPQDKLAEQLPYSLDDLADALQWLGGLPDTEGASPQAVADHPPKARTPERAIVKLPHVGDVMRWDATADLMWADEDLELWVRDSLEPDDAQVGIVVRQPLPDEDAEVIPLLAATPVDQAEVFPAGIAVARAVVDRILEGRGDHARAFLSRADEITPLGADDASAIRPGDVVIVDAGHALTRHGVVVSDANRAESLETRWGTPDVAVIQKDSADSQWLSALADLTAEDAQTEYSDLGGEGLLTLGPPNALGELPWIVVTSQKTAEEDEELRQEWSASDQPVLLTAHQSNVAGRARRLGERVALDPELTAALELAGAHHDDGKADPRFQHLRLSNYSSLVLAKSEHRSSQAVVRRQFAGGELPRGWRHELRSVAVSWAEVSLAPHGPLVARLIGTSHGRGRILPQPDAASLATPSDPAEVNERVAALFGSGEWPELMAATSTTYGVWGCAYLEALLRAADCQVSKEGS
>NZ_CP010341.1|WP_044635952.1|425199_426741_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MSPLTIRAVFPLGVFQGHRADGSPDRLPDTARLFSALVNAAGQGSEAIAVKGRLEPSSESTAALSWLEKHPPTMIRIPNHVPVSPDRRPDAYRKTGTVQGPKKSPAMRIGARQISTGTAIDDCVGWFWADAPSEVQETVGRLCADVSCLGEDDSPVILTLDQFVPTHELVASTQQLRPIGLAVRTPGPGRLDELIRAHHEAFPPKMPSAAQDSPSFSEMPRGSRVPTEGLRVLRYKSPTPPPADSPWPLAMLLPLSAHIALEDGLTWCVAMHRMLISRLGDGAPAIVTGHYARGASQPANRVAVQYLPPTLLSHRAESGDFPHGAIALLLPASIAAEDRGEIVRALNSPRLGLWSSAGRVTLGTPLRIDASQFWPTPQPGWRRQWRTLDGMVPETRRQPRHELLGAWGFPQSALLSVGHVFREELALTRANTYWETVSVVTDRGVQILGTHLIPDSEVSRYVHKVPRSIGVVQPYSAQLDLADLVNDRALLALGQARHLGGGLLVPMDSPEVS
>NZ_CP010341.1|WP_044635953.1|426742_427942_-|type-I-U-CRISPR-associated-protein-Cas7
MTDLTYSDLEAACHAGGASVLSSVTELAPAAGPQAGIAPARYVQGRDGTYAYETRFIGGEPSSVVVVDSKASQLNRVEDAISLAIEEGDPSLTRMPSIRVDYETLSATDYQLPHRFSDGHIRFGTIDGEVTTKYPAYVAARNASPANARALLELSPVSLAFGAWDSTRKAHQARFRSCLVGEIIGQLADQTEAGRKPPRRGSARKDDIAPSVQLNEKDMLTLLATQEDEMSPTTVDKITKDAKKAKNKPTSASVLGLGAIPPSLDGLGFVSCRRIIRSHVLSFSALRQLRFGADNAGNVACRALLAALSLHGLALSDQELELRANCDLVEAGDPVVTLDGRRGTHTELEPLVPEVTGPILATAIERAVATAGIRWDGQVLEVTGNPIILAGATADADED
>NZ_CP010341.1|WP_055345783.1|428470_429745_+|threonine-ammonia-lyase-IlvA
MTTTEVSTLAHLVDQAAEGLAGVARVTPLQYNERISSTSGCRVWLKREDLQPVRSYKLRGAYTFISKLSDDEKRAGVICASAGNHGQGVAWACARLGITGTVHVPSTTPRQKRDRIRFFGGDHVRLVVGGDTYDDAARAAQVEADRTGATMVPAFDDPLIASGQGTVARELVEQLGHAPDVLVVPVGGGGLLSGCGAWMRENHPETRIIAVEPAGAAGLAAAMDAGRPVRLDHIDSFVDGAAVARVGDFTFKIARQLAPDLIAIPEGQVCTEMLSMYQVDGIIAEPAGALAASALSVHPMDTTLGIDPSQEIAIIVSGGNNDVSRYAEVVERSGVHEGRRRYFLVNFPQEPGALRRFLNEVLGPDDDIIVFDYTKHSNRDTGPALVGIELGDPTSFAELWTRMEESPLNVEVLEPDTAIYRMLV
>NZ_CP010341.1|WP_044635954.1|430218_430506_+|DUF2249-domain-containing-protein
MTDLPITQTHHCTCAEGETNTPELDASAIPHAIRHAAILGALQGLGHNESMILVAPHNPLPLLDQIDSMWPDVFSLEYVQEGPDAWKIRFTRVAA
>NZ_CP010341.1|WP_060759138.1|430511_431522_+|ArsR-family-transcriptional-regulator
MDGQTGLVRRAAVLGVGATDGAYPSDRGAPLDPQCQRLMDALLTAPGPMTVAQLGVDAEMRPNTVRFHLAHLGDAGLVSGVSARTTTRGRPGVLYRATARAFDSGPQHPRLLTEVLMHHFLADAATPPPSVEDPQRPTTVWERARRAGRAWSSHVETLPGGSPAHGGAGPEHVTDGTAQFDALLTQLGNWGLAPNRIRDPGVPDGSAVPDESAAASTHSPVGSTIGPGPVSPDPAAAQRDHLPDRIRIGLNRCPFAHEASECPDLVCGVHAGIIDGLLAQLGGSWRVARLTPHASAGQCLLDAELTHPALQAPPCPAAAYPDSVHRAGRGGTTPRA
>NZ_CP010341.1|WP_052809072.1|431596_432874_+|hypothetical-protein
MSQPVAVPEQGSADPPLKPASQTRRVIVLLVPCGVAMVMGLDAALVLLGLPAPLSGERFSSAHGIIMTIGFLEALVSLESAVSLRRLWAYCAPAALAVGALLVLTPLPLQAGQLLMLVGCALLIVNYSVLWTRKHEPMVAVQVGGALAALGAVLLWTGGVSIPDLFAWLVTFLMLTIAAERVVISRFSPSVLTPAGARRYQRGIVVISALIVFACPLTTIWSGRVLPVFGLALIALTVVAAWGDGARSDLRVRARATVAGSDAASDADTASGSAITPSQRFTGVMVFISYLWLIVTGLLLVHPTLSGLHYDALLHAVFLGFVMTMVVAHVPTYLPFLLEIRFRFNPGFWGVAVLLNVGLVVRIVADLAGSETGRTLGGLANIAALLSLVAVAVWAAVVKGPEDPQAPAGDTRAISDTSPTKDSRA

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Crispr_ID: NZ_CP010341_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010341_3

742801-742898

Orphan

Consensus_repeat	Method
GTGGGTCAGCCTGTTGGGCTGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010341_3

>merge|NZ_CP010341|3|742801-742898|CRISPRCasFinder
GTGGGTCAGCCTGTTGGGCTGACCTGTGGTGGATCCAGTGGGTCAGCTTGTTGGGCTGACCTGTGGTGGATCCAGTGGGTCAGCTTGTTGGGCTGACC

>NZ_CP010341|3|3|742801-742898|CRISPRCasFinder
GTGGGTCAGCCTGTTGGGCTGACC	TGTGGTGGATCCAGTGGGTCAGCTTGTTGGGCTGACCTGTGGTGGATCCA
GTGGGTCAGCTTGTTGGGCTGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010341.1\|WP_013160580.1\|729867_730905_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380488
NZ_CP010341.1\|WP_013160591.1\|742917_743169_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475
NZ_CP010341.1\|WP_041704499.1\|738869_739811_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176205
NZ_CP010341.1\|WP_013160597.1\|749937_752427_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273429
NZ_CP010341.1\|WP_144406080.1\|745573_746779_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226964
NZ_CP010341.1\|WP_036939900.1\|740792_741986_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP010341.1\|WP_013160592.1\|743458_744475_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226966
NZ_CP010341.1\|WP_013160586.1\|737931_738819_+\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|370378
NZ_CP010341.1\|WP_044635816.1\|746667_747702_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP010341.1\|WP_013160590.1\|741982_742681_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP010341.1\|WP_036939569.1\|731148_732129_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380532
NZ_CP010341.1\|WP_013160584.1\|734850_735879_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|183235
NZ_CP010341.1\|WP_044636040.1\|744546_745503_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226965
NZ_CP010341.1\|WP_044636042.1\|754009_754621_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NZ_CP010341.1\|WP_013160588.1\|740110_740446_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NZ_CP010341.1\|WP_044636041.1\|752550_753999_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010341.1\|WP_013160585.1\|736173_737727_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP010341.1\|WP_013160596.1\|748547_749801_-\|cardiolipin-synthase-B	unknown	unknown	gnl\|CDD\|224419
NZ_CP010341.1\|WP_036939556.1\|747719_748475_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226963
NZ_CP010341.1\|WP_044636039.1\|733795_734854_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093

Protein	Function_ID	Function_description	E-value
NZ_CP010341.1\|WP_013160580.1\|729867_730905_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380488	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.72778e-103
NZ_CP010341.1\|WP_013160591.1\|742917_743169_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	6.24031e-09
NZ_CP010341.1\|WP_041704499.1\|738869_739811_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176205	cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	3.12165e-127
NZ_CP010341.1\|WP_013160597.1\|749937_752427_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP010341.1\|WP_144406080.1\|745573_746779_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	6.05811e-101
NZ_CP010341.1\|WP_036939900.1\|740792_741986_+\|ATP-binding-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.63584e-25
NZ_CP010341.1\|WP_013160592.1\|743458_744475_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|226966	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism].	3.89977e-74
NZ_CP010341.1\|WP_013160586.1\|737931_738819_+\|DUF1963-domain-containing-protein	gnl\|CDD\|370378	pfam09234, DUF1963, Domain of unknown function (DUF1963). This domain is found in a set of hypothetical bacterial proteins. Its exact function has not, as yet, been described.	2.43747e-44
NZ_CP010341.1\|WP_044635816.1\|746667_747702_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.4963e-81
NZ_CP010341.1\|WP_013160590.1\|741982_742681_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.02291e-65
NZ_CP010341.1\|WP_036939569.1\|731148_732129_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380532	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.	3.26283e-102
NZ_CP010341.1\|WP_013160584.1\|734850_735879_+\|sugar-ABC-transporter-permease	gnl\|CDD\|183235	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional.	1.75529e-91
NZ_CP010341.1\|WP_044636040.1\|744546_745503_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	2.53609e-122
NZ_CP010341.1\|WP_044636042.1\|754009_754621_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	5.30232e-90
NZ_CP010341.1\|WP_013160588.1\|740110_740446_-\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	7.54301e-21
NZ_CP010341.1\|WP_013160585.1\|736173_737727_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP010341.1\|WP_013160596.1\|748547_749801_-\|cardiolipin-synthase-B	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	7.67668e-76
NZ_CP010341.1\|WP_036939556.1\|747719_748475_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	7.55434e-140
NZ_CP010341.1\|WP_044636039.1\|733795_734854_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	3.58514e-60

>NZ_CP010341.1|WP_013160590.1|741982_742681_+|response-regulator-transcription-factor
MTSLPGPLTTDEPRPEGPRRVVLVDDHDIFRAGVRHELTAAAPDEIDVVGEAGDVEQAVKVITGTTPDVVLLDVHLPGGGGAEVVRQVHQIDPKITFLALSVSDAAEDVIAVIRAGARGYVTKSISTADLVEAIGRVATGDAVFSPRLAGFVLDAFSGSISVESIDEDLDRLSQREREVMKLIARGYTYKEVARELFISIKTVETHVSNVLRKLQLSNRHELTKWATDRKLV
>NZ_CP010341.1|WP_036939900.1|740792_741986_+|ATP-binding-protein
MRGSWLGGVCTGIADYLGSPVWPVRLCFVLLAMTAYLGVVAYAALWAFLPIKDEAAEQARAVRPARKPRSSRRQDLEVWLSIGLVLLLCLGLLVLSRLFGLGSIHAFFWPVVLAAVGIGLVWRQADQPEEEPDRLVPRWMAPLVSSSKWATVLRMGLGMTLVGASVLLVAYTQVDGPYLPAVLGMVALALAGFGVLTAPWMNRMRSNLARAHEEKLVADARADMAAHLHDSVLQTLALIQRQADDPKAVASLARRQERELREWLYGEAPGPRDFRAALRDAGAQVEDSSGVRVEVICVGDATLNDGLSAMILAAREAMMNSAKHSGADHIDVYAEVDDDHVELFVRDRGVGFDAEQIRADRMGVRRSIIERMERHGGTAQVRSAPGEGTEVKLEIAR
>NZ_CP010341.1|WP_013160588.1|740110_740446_-|PspC-domain-containing-protein
MRTAGAVQTPIQEEPMGTKQLVRRHDNRWIAGVAGGLADYWGIDALAVRLGFIILGLVTFGTAFWAYLICWLLIPDGVDGSKGLDAVKRTINGFRDKNDGPQDFNPYDDTK
>NZ_CP010341.1|WP_041704499.1|738869_739811_-|zinc-binding-dehydrogenase
MLAMVLDHPGGADTFRPEERPIPEATATHSVLEVMAFGVNHAELITRAGGSPDVRFPRVIGIEAVGRVHATSPASGLEVGQRVVTLMGGLGRDFDGSYQEYALVPNSQLYPVGIEMAWNRLATIPESFYTALGSLDRMHLTAGDALLIRGGTSSVGLAAMQLAKSFGVRVTSTTRSPGKIARLEALGADEVLVDAGTLPGTERFDGVLELVGAATLDDSMGHAAPRGCVVVTGGLGGQWTVPDFDPFSIRGYLTNFQSTEVNPALLRHMLTLVAQQGLSLPIVGEFPLPDVGRAHEALETSTEMGKIVVSVAH
>NZ_CP010341.1|WP_013160586.1|737931_738819_+|DUF1963-domain-containing-protein
MSQDLKQALFGVFDAVQKNAIKLDFGADPEPGEAGQSRLGGRPDVPRDFEWPRFQDKDDDSADANRPLTFLAQVNLADATRYDTEGLLPTAGVLSFFYEMETQEWGFDPRDKGSARVFFFEDPATLRPASVPDDLDDWFPDGQAISYRNMVDLPAWLGFTELPEEVRRTNPLPVPLTDIEWEDYDAMREEYGAPSEGDDAVTTKLLGHPDVVQNPMEAECEMVTRGMADGAEGEEISQELRDDIEKASRDWTLLFQMGTDSGLEFGDVGHINYWIKKQDLARRDFDKAWLILQCG
>NZ_CP010341.1|WP_013160585.1|736173_737727_+|glutamine-hydrolyzing-GMP-synthase
MPASHDLVLVVDYGAQYAQLIARRVREAHVYSEIVPHAMSVDEMVAKKPTAIILSGGPASVYVPDAPKVDPALFSTGIPVFGICYGFQLMAGALGGTVEHTGTSEYGRTSVAIDDTGVLLHDLDDISSVWMSHGDSVTAAPAGFASLARTAGAPIAAFEAPERKLAGVQWHPEVAHTERGQEVIEHFLFDFAGCKPTWTSSSIVDDQVSRIRAQVGDKRVLCALSGGVDSAVAAALVQRAIGDQLTCCFIDHGLLRKGEAEQVKHDFVQITGVDLVVADESERFLSALAGVSEPEAKRKIIGREFIRSFEDVARQIAGDKGIDFLVQGTLYPDVVESGGGDGAANIKSHHNVGGLPDDLQFTLIEPLRALFKDEVRAVGAELGLPDSMVWRQPFPGPGLGIRIVGEITQDRLDLLREADAIAREELTAAGLDREVWQMPVVLLADVHSVGVQGDGRTYGHPIVLRPVSSEDAMTADWSRLPYDLLEKISTRITNQCPEVNRVVLDVTSKPPATIEWE
>NZ_CP010341.1|WP_013160584.1|734850_735879_+|sugar-ABC-transporter-permease
MSAQTLNAAVPTRALPSWLKIDRKRIPTLASVVIFLIMIIYGQAAYGQTLTMSTASNLLINNAHLIILAVGMTFVILTGGIDLSVGAVIAFSSVLGAQLLNAGWNPVLVMGIIVVVGGLFGLASGVLVQYFRVQPFIATLAMMFLARGLASILSTTPIRLDDASGFRTLATQWKVIDGPKVNDLVITPNVLIAVVVVVAGFFILHRTRTGRTVYAIGGSEPSAELMGLPVNRTKYLIYVISGLCAGIASVVYTSKLGMAQNVTGVGWELDAIAAVVIGGTLLLGGAGYVLGSVLGALVLGLMNVLIARDGSIPPEATTIITGAILLLFVLLQRAVVKRDHND
>NZ_CP010341.1|WP_044636039.1|733795_734854_+|ABC-transporter-permease
MKAIVKNQYFWGIIALVLLIMVDVIKDPSFIQITVSNGNLYGSLIDILRGSAPVLMIAIGMTLVIATAGIDLSVGSLMAVAGAVSMEFLASAANSGSTGAVLTALGLSLLVTVILGAINGLLVSVVGLQPFITTLIMMMTGRGIAKVITGGQNTSARSDGFAWISTGTVFGFPVAFVIAIAIVALVALVVRRSALGMTIESVGINQRASRMAGIKPLYILFSVYVISGLLAGMAGVFATANVMTVEVSKTGMDMEMDAILAVVIGGTSLAGGRFSLGGSAIGALLITTLNRTVTFLNVPSAATPAFKAAVIIIVCLLQSERVRNLFKTLKRSRRVVEAAPARVEEVKEVVAA
>NZ_CP010341.1|WP_036939569.1|731148_732129_+|ABC-transporter-substrate-binding-protein
MRKLLKLIAALGAFALALTGCSGGGSGSDSGSSSKTLTVGFVAVGPEGGWRTANKTNIQNTFSKDNGINLKYAPSDNGDQASQITAMTSFIDEGVDAILLSATEATGWENVLNRAKEAEIPVFLLDRGIEPDNTSLYASRIAPDNVAISESAANWAVKQFPEGAKYVVLEGPAGLSVVNDRNKGWDSVMSTHPEFQKIASQSANWSQNDGKSVTETLLKANPGIQLIFAQNDEMGLGATQAVTEAGLTPGKDVKIITIDGTKAALESLSAGQLSFVAEYNPLFGDIALNAVKKAKAGEHVDALYTVDSVTFDSPEAAKAALPNRAY
>NZ_CP010341.1|WP_013160580.1|729867_730905_+|LacI-family-DNA-binding-transcriptional-regulator
MAAGTAPNIRDVAELAGVSHQTVSRVINDHPSIQPQTRARVEAAIKTLGYRPNSAARSLARMRTGRIGAIVDSPEHFGPMNTLRGVEVASRRAGYFLSSVSVNDDSVDAINQSLEFLLDQNVEGLCLIAPRLPLLEVIRRRGLQIPSVVIATDTAHLVDDNGLQASVDQELGTRMMVDYLLELGHTRIAHLSGPHDWGDARSRRATFEATLAAHGLTPAAIVEGDWSPDSGFAAGPGLIEGTGATAVFSANDQMALGLVHYLSEVGLRVPDDVSVVGFDNTPESAHMIPPLTTVRQNFEKLGEMAIGSLLARIKGARVERETLRTQPSLVVRSSAGPRPATQRSR
>NZ_CP010341.1|WP_013160591.1|742917_743169_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGLISWIILGLICGTIAKAIIGGRAGWISSLIIGVVGGLAGGWLGSLLFHRPLSGFFSPWTWLLSVVGSCLVLWVYNKVSSRS
>NZ_CP010341.1|WP_013160592.1|743458_744475_+|ABC-transporter-substrate-binding-protein
MSSTRFTNRGTLAVVALSAALLAGGLTACSSGAGSDTSPATHSAAALSSIEITDNNGTHTVTTPPQSVVALDNRTFETLSQWGVGLKAAAVSLMPSTISYTTDKSIVDIGNHREPNLEAIVAAKPDLVINGQRFTQYTDEIKSLVPDTTILDLDPRDGEPFDQELKRQTTVLGEVFGKQAEAKKLNDDLDGAIARVKKAYKPADTVMAVNTSGGEIGFIAPHVGRALGPVYDFAGLTPALQVQGSSKDHKGDDISVEAIASSNPTWILVMDRDAAISADDPSYKPASELLKNSQALAGVTAVKEGNIVTMPADTYTNESIQTYTEFLNDFAAALESRA
>NZ_CP010341.1|WP_044636040.1|744546_745503_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MPDRKLLDPKLLVGIVVVAGLLVLSLTTGVYDVFGASDGSRMFQITRVPRTVALVLAGAAMAMSGLVMQLLTQNRFVEPTTTGTTEWAGLGLLLVMVIAPNASIGTKMAVAVVAAFLGTMVFFAFLRTVTLRSSLIVPIVGIMLGAVVSSISTFIAIRMDALQSLGVWFAGSFTSILRGQYEILWVVAAVGVAIFLVADRFTVAGLGKSVATGVGMNYERIILMGTGLVAVATGVVTVVVGNLPFVGLIVPNIVSLARADDLRSNLPWVCLLGIGLVTVCDLLGRVIIMPFEIPVSLILGIVGSVVFVVLLLRQRRRG
>NZ_CP010341.1|WP_144406080.1|745573_746779_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MVVDTPTRETPPVRTHTGAFATRAARRRYLVVVVGLAVAAVAASFGLLAWANPMPVGSRGFWKIAQRRLASLVVIAVVAFSQALATVAFQTITNNRIITPSIMGFESLYRAVQTSAVYFLGVAGVVALQGVPQFLIQVAVMVALAVALYGTLLSGRHANLQVMLLIGIVIGAGLGSVATFMQRMLSPSEFDVLSARMFGNISNAEASYLPVAVPLCLAAGLGLWVRSQRLNVMALGASAATGLGLNHRRETMLGLTLVSVLIAVSTALVGPMTFFGFLVATLTYSLAGTHDHRRIFPVAVLTGFVVLAGAYFVMRYVFYAQGMVSVIIELVGGTTFLIVLLRKGWCHSVEATLPVGGGLIGGVCGWRGWGCRSVTGRRSRRPRKRAGRCGGSPVTWGVARR
>NZ_CP010341.1|WP_044635816.1|746667_747702_+|IS30-family-transposase
MARVGLSFSDRSEISTASKAGWSVRRIARHLGRCPSVILRELHRNSTKTRGYQAVTADVRAQRRRARPQQRKVAGDPVLQARVEADLAASWTPNEIAGRLRLEATDPTVERMANSADARGRTVSGEAIYQYIYAIPKGELARKGIFLQSKRTKRRPRTTGRTRGGPIVGMVPIAERGEDAAQRRVPGHWEGDLIIGKNGTSCAATLVERMSGFTGLLALSSKHAEPTADAVIEFFNDLPEMMKASLAWDQGSEMAQHAKVSLATAMPVYFADPHSPWQRPSNENTNRLYREYLPKGTVIPDHQPYLTTIAEEINNRPRRRLGYLTPTEAFARLLAGEPHVASTP
>NZ_CP010341.1|WP_036939556.1|747719_748475_+|ATP-binding-cassette-domain-containing-protein
MIALADVLKKYSPEVCIGPVDLHIPDGGITALVGPNGAGKSTLLTMIGRLLGLDTGVIEIAGYDVARTKSADLARVVSVLQQENHFVTRLTVRQLVGFGRFPYTHGRLSAADEELVDQALDFLALRDLEARYLDELSGGQRQRAYVAMVLAQDTEYVLLDEPLNNLDMRHSVQMMRHLHRAARELGRTIVIVLHDINFAGRYADHICAMKDGRVAAFGPSDEIMDSAVLTEVFDTPVDVVQGPHGPLAVYY
>NZ_CP010341.1|WP_013160596.1|748547_749801_-|cardiolipin-synthase-B
MRLPPATGRVVRNALLGILGAQLGAAGVLVAADNVRKHRAGPARFPRSAVTQARADDDLVSVYSYGEDLYNDMLTAIRRAKHTIFFETFIWKNDPIGQDFKQALIEAANRGVAVYIVYDQFANMVVRPSFFRFPDNIHVKRHPLVQSVAFWNLRNSGRDHRKILVVDSRVAFMGGYNIGSRYARTWRDTHARFEGPSVADFENAFVDYWNLRPVHLLSSQRSSMPELPDTSQRRWDGSVRLSRNTPRWAVFPIRNMYLEAIDKAQRNIWLTSAYLIPDDDLRTALARAAQRGVDVRIIVPAQSNHVIADWLSRGYYTGLLRDGIRLFLFHNAMVHAKTATIDGHWSTIGTANIDRLSLAGNYEVNAEITSPQVATALERIFLTDQSNCTEMDLARWERRSIVAKGTEWLLAPWRPLF
>NZ_CP010341.1|WP_013160597.1|749937_752427_+|UvrD-helicase-domain-containing-protein
MTDQTPPDLFSAFDQRLSALGAPGSGEGFAPHTPHDAHDDAEALLHGLNPPQEQAVVHEGSPVLVVAGAGSGKTRVLTRRIAWLIAQRGVHPGSILAITFTNKAAAEMRSRVAELVGPRTRTMWVSTFHSACVRILRTELAEAPELGLRRNFSIYDDTDTKRLMTLVLRDQNLDTKKFPPRTVMGWISNAKNELLGPGAAAEQADNGNEELYAQAYEEYQRRLRAANAMDFDDLIMITVQLLHDHPDIREKYRRRFRQVLVDEYQDTNHAQYLLIRELCAPNEDQIDAPRVDPPELLVVGDSDQSIYAFRGADVRNILDFEQDFPGARTILLEQNYRSTQTILSAANAVIQHNSGRPVKKLWSDAGDGDKIIGWVADTEHDEARWVAEKIDELHDHQQAAYSDAAVFYRTNAQSRAFEEVFIRLGLPYRVVGGVRFYERREVRDALAYLRAIANPADDVSIRRIINVPKRAIGARAETALEMFAVSQSIPFSQAVDRAAEVPGLATRSRHQVESFASMMAGFRGLVAAGSSADEVVAAVLKDSGLLDELKDSKDPQDETRVENLVELVAVAQEFVAQAHTLDLSAGLRPDAPGDQDAPELADELVAGMPEADDSLGAFLERIALVADSDQIPDSDPDSAGVVTLMTLHTAKGLEFDNVFLTGMEDGIFPHMRALADPAELSEERRLAYVGITRARRRLFMSRAAVRTVWGQPQYNPPSRFLEEIPAELIDWQRTGADLTSWGSSASARTASARRQTSTGGPVFGSGHGDLPRTKTVASLEPGDRVLHSSFGMGTVVAAAGSGNNATADVDFGSAGVKRLALRFAPLEKL
>NZ_CP010341.1|WP_044636041.1|752550_753999_+|hypothetical-protein
MLETHAEESETSVRDRARTLPWRATTALSAVGTALASWIIVTAFCSLGWLSQSQSSYAQVLEFGTHAWLLGHGVPMTIEGVRVSVIPLGFALLVMLVTTSFVMTIARHLATRAFGGRARTERQDAEARGLALRMTVWFTVPYMAILAVAASATGESAQIGRALIGGLVICGPITLITTGRALGWSVITFNQGGWIRGVIAGVWSAVAALIGVAALVLLIALIARHGQVGALHNALNPGGLGGAVLAIGQAAWVPNAVLWTAAWLLGAGFTVGDDTLLTPLVSRLGPTPDFPILGALPSGAAPSSAGLAWLLVGVLAGALGAFVAVRARHNNATQALPPRRMSTEAAALCGVCIGVLSGLLACVLIAFSDGSLGVERLRRVGPMMARVVVLAPTLMGAGGLLAGYGAMHVFKLIARRGAAAPSPAPQPAGTRAKRPSLRALLRRRGEATVPTASRPDDNDTTDAAPTTDSGSGAADPVHGDEG
>NZ_CP010341.1|WP_044636042.1|754009_754621_+|phosphoribosylglycinamide-formyltransferase
MAYRVVVLVSGSGTLLQALLDAQAAGALDARIVAVGSDQPGCRALARAQDAGVDTFVVPMTTLLPRGSAARQAWDEEFARAVDACSPDLIVLAGFMKLLGEPFMRRFAGRVINTHPAMLPAFPGAHAVRDALTAGATTTGSSIFWVDDGVDTGSLIVQEPVPVRPGDDEDTLHERIKVTERRLLVATVNELARRAPAGDPTSV

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Crispr_ID: NZ_CP010341_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010341_4

1500774-1500887

Orphan

Consensus_repeat	Method
CTCCGAGCTGGCCGGGACGTCGCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010341_4

>merge|NZ_CP010341|4|1500774-1500887|CRISPRCasFinder
CTCCGAGCTGGCCGGGACGTCGCCCGCTGAAGCCGTCGGCTCATCTGACGCGTCCGCAGTATCGTCCACGCTGGCCGCGGTGTCATTCTCCGAGCTGGCCGGGACGTCGCCCGC

>NZ_CP010341|4|4|1500774-1500887|CRISPRCasFinder
CTCCGAGCTGGCCGGGACGTCGCCCGC	TGAAGCCGTCGGCTCATCTGACGCGTCCGCAGTATCGTCCACGCTGGCCGCGGTGTCATT
CTCCGAGCTGGCCGGGACGTCGCCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010341.1\|WP_044636211.1\|1510155_1511577_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP010341.1\|WP_013161250.1\|1492616_1494371_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP010341.1\|WP_013161267.1\|1515403_1516435_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP010341.1\|WP_044636212.1\|1511580_1512135_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235116
NZ_CP010341.1\|WP_013161269.1\|1517941_1520470_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP010341.1\|WP_044636209.1\|1499607_1500639_-\|HAD-IIA-family-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_CP010341.1\|WP_044636210.1\|1508759_1510028_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP010341.1\|WP_114178845.1\|1512131_1513400_-\|acetylornithine-transaminase	unknown	unknown	gnl\|CDD\|235112
NZ_CP010341.1\|WP_081081451.1\|1501822_1502563_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010341.1\|WP_044636205.1\|1491961_1492624_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_CP010341.1\|WP_044636207.1\|1498047_1498776_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP010341.1\|WP_063493758.1\|1490973_1491969_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP010341.1\|WP_013161253.1\|1497130_1497370_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010341.1\|WP_044636206.1\|1497442_1498051_-\|cobalt-permease	unknown	unknown	gnl\|CDD\|223692
NZ_CP010341.1\|WP_097807279.1\|1496142_1497066_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|235121
NZ_CP010341.1\|WP_013161268.1\|1516599_1517814_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181738
NZ_CP010341.1\|WP_080516104.1\|1513347_1514361_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NZ_CP010341.1\|WP_013161266.1\|1514255_1515407_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|235441
NZ_CP010341.1\|WP_013161251.1\|1494457_1496149_-\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP010341.1\|WP_044636208.1\|1498789_1499419_-\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187

Protein	Function_ID	Function_description	E-value
NZ_CP010341.1\|WP_044636211.1\|1510155_1511577_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP010341.1\|WP_013161250.1\|1492616_1494371_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP010341.1\|WP_013161267.1\|1515403_1516435_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	2.28768e-151
NZ_CP010341.1\|WP_044636212.1\|1511580_1512135_-\|hypothetical-protein	gnl\|CDD\|235116	PRK03341, PRK03341, arginine repressor; Provisional.	7.65162e-57
NZ_CP010341.1\|WP_013161269.1\|1517941_1520470_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP010341.1\|WP_044636209.1\|1499607_1500639_-\|HAD-IIA-family-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.3109e-78
NZ_CP010341.1\|WP_013161266.1\|1514255_1515407_-\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|235441	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ.	0
NZ_CP010341.1\|WP_114178845.1\|1512131_1513400_-\|acetylornithine-transaminase	gnl\|CDD\|235112	PRK03244, argD, acetylornithine transaminase.	0
NZ_CP010341.1\|WP_044636210.1\|1508759_1510028_-\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP010341.1\|WP_044636205.1\|1491961_1492624_-\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	1.00221e-36
NZ_CP010341.1\|WP_044636207.1\|1498047_1498776_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	3.4073e-57
NZ_CP010341.1\|WP_063493758.1\|1490973_1491969_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	1.98217e-131
NZ_CP010341.1\|WP_044636206.1\|1497442_1498051_-\|cobalt-permease	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	9.93942e-11
NZ_CP010341.1\|WP_097807279.1\|1496142_1497066_-\|NAD-kinase	gnl\|CDD\|235121	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	1.51939e-150
NZ_CP010341.1\|WP_013161268.1\|1516599_1517814_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181738	PRK09265, PRK09265, aminotransferase AlaT; Validated.	0
NZ_CP010341.1\|WP_080516104.1\|1513347_1514361_-\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	8.24095e-153
NZ_CP010341.1\|WP_013161251.1\|1494457_1496149_-\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	6.38406e-169
NZ_CP010341.1\|WP_044636208.1\|1498789_1499419_-\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	5.11724e-27

>NZ_CP010341.1|WP_044636209.1|1499607_1500639_-|HAD-IIA-family-hydrolase
MTAVVGPQQALCDQYDAALFDLDGVIYLGPNAVPGASQAVDGLRAHAVRVGFVTNNAARPPQVVADQLNRIGVRSTIDDVVTSAQAAARMLQETLEPGARVLCLGTQALADEISSVGFTLVDSRLDEPAAVIQGYDPDMTWPRVTDGVHAIAAGAQWFACNLDLTRPTDLGLEPGVGTQVNAVRACFPDREPLVAGKPFPALLRETERRLGSQHPIFVGDRLDTDILGAFNTQMDSLFVFTGAHGVRDLVEAVPQERPTHLGYDVRALLAPVRRATVDGLVARCGEQKVRLIDGALELEEIPPGRDEQLDVLWAALQLLWKLSDDGGLTPESWASLQGLDTLH
>NZ_CP010341.1|WP_044636208.1|1498789_1499419_-|biotin-transporter-BioY
MTATPAKAGTVVEEAGKGFQASDLALIAVFAALMAVFALIPPIFTVGAIPFSLAMIIVLLAPLVLGSIRGGASMALYILVGVAGLPVFAGGASGPAKLIGPSGGYLVGYIACGLICGAIMTALVRRRPGRRVLPVLLCLIAVVGVGVVHVFGVAWFMAGPLHLTLGKAIATTAVFLPWDILKAVLAGLLATAVFLAYPRLMPRPRNSAK
>NZ_CP010341.1|WP_044636207.1|1498047_1498776_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MIDFQGVSVQVEGYDLEGRPTTTTILSNVTARLVEHRVAVIGANGSGKSTLLKLVNGLMKVSAGTVLVDGLDPARRPKEVRRHVGHVFTDPGAQLIMATPLEEVELSLRASVSHRAERRERALQILADHGLSKVANRSVHALSGGERQLVSLASVLAVQPTIVIADEPTTLLDLRNRILLSRAFDALEQQLVVSTHDLDLASAMDRALLIDDGELIDDGHPDEVIARYRAMMSDRAAAGNPR
>NZ_CP010341.1|WP_044636206.1|1497442_1498051_-|cobalt-permease
MSAETFLGAYRVGHSLMHRCPLWVKYLLLVAVGVVPFFAKNVPLSLAAFAVAAVLVVAGSGMGIAQLNPGVGLLVMNAVIVAYDWIFRTWQEGVVFACGMIATLWLARIITSTTPSGLIMDGIAACARPFRIIGANPEKFALAVSVMWSSIPYLLVSVRNVRDAARARGLRFSWRFVAPVLVTAVGHALQVGEALQARGLGD
>NZ_CP010341.1|WP_013161253.1|1497130_1497370_-|hypothetical-protein
MSTDRDSSVQPTPTSPDDAPLPPVTGNDQVDRALAALGQLPTLDVEQRIARLGAAQEQLQAILNGSRDAGIPMPDPPAR
>NZ_CP010341.1|WP_097807279.1|1496142_1497066_-|NAD-kinase
MNQSRRVAITMHPVRTEALDGAAEFIAGMNLHGIECVVEESRVAEMRRRLPDVRIAALSNDSQVELMVVFGGDGTILRSAEWALPHRVPLLGVNLGHVGFLAELEASQIDELIAQVADRDYEIEKRLTLAVTVRDGDGRTVWESFAVNEVSTEKASREKMVDLLVTIDERPLSRWGCDGVLVASASGSTAYAFSCGGPVMWPNTEAFEVVPIAAHALFSAACVVAPTSTVDLRMVGDMSLGAVVWCDGRRSVDVHAGYRIGVRRNPDDLQIARLREQPFTTRLVKKFGLNIDGWRSPGLQRPTPEPC
>NZ_CP010341.1|WP_013161251.1|1494457_1496149_-|DNA-repair-protein-RecN
MLTELHIQQLGVITESRLEPAPGLTAVTGETGAGKTMIVTGLGLLLGHRADPTMVRTGAEQARVEGVFTGLDDVATRLSELGAETDAGELIVARQLRTNGRSRAWLGGVAAPLGTVAGVVGELATIHGQLEQVRLGTEERQRQVLDRFGGKPVAEVLERYRELFELRRSVDKELNERVENSRERAREADLLAFGLSEIERVDPQPGEDTELATRAQRLQAMDDLRMLAQEASHALSGADDGDPDDPGVVGLAGIAVKNTGRIAEMDPQAEALGEQLNQLGLAAQEAAGALASYVAGLDADPLALETITTRRAELADLTRKYGENIDAVLDWARDASERIEDLGSDEQRIEALRTRRTQLDEQLHHQAEVLHGLRVKAAQHLASGVREELGALAMPHARLEFRLEPLELPGPWGSDRVSLLFSANPGSPLAPLAKVASGGELSRIRLGLEVVLAGSDPGHTFVFDEVDAGVGGQVATEIGRRLAKLARHSQVIVVTHLAQVAAFAERHYVVTKSSDGLVTTSDVELVSGDQRLHEIARLMAGSESDKALAHARELVADAAGTQN
>NZ_CP010341.1|WP_013161250.1|1492616_1494371_-|CTP-synthase
MGNAKQTKHVFVTGGVASSLGKGLTASSLGSLLVSRGLSVTMQKLDPYLNVDPGTMNPFQHGEVFVTEDGAETDLDIGHYERFLDRNLTARANVTTGQVYSSVIAKERRGDYLGECVQVIPHITDEIKSRMLNVAQPGDDVVIHEIGGTVGDIESQPFLEACRQLRRDIGRENTFYIHVSLVPYIGPSHELKTKPTQHSVAALRSVGIQPDALVCRSAMELPESIKRKIAFSCDVDEEGVVACPDASSIYAIPKVLHHEGLDAYVVRVLNLPFHDVDWTTWNDLLDRVERPTEEVTVALVGKYIDLPDAYLSVVEAIRAGGFANWARVRVRWVKSDDCETEEGAAEQLGDVDGVIIPGGFGIRGVEGKLGAIKYAREHKVPILGLCLGLQCMVIEVARDVAGIADAASSEFEPDSKNPVIATMAEQRSIVSGEGDMGGSMRLGSYPAELKRGSIVAHLYGRTKVSERHRHRYEVNNGYRDQLEKAGIVFSGLSPDRNLVEYIELPTEEHPFFVGTQAHPEFTSRPTKANPLFSGLVQAAIEHYKSTHRTVRTTGRKKPAARRTRTSTKRGSRKSAQAGAVTVSE
>NZ_CP010341.1|WP_044636205.1|1491961_1492624_-|NUDIX-hydrolase
MSELVDRSEHWPILSHRVEATGRVCDFVEDKVAMPDGDVMTRQWVTHPGAVAIMALDEHQRVAVVDQYRHPVAMRLVEPPAGLLDKPGEPPLSAAKRELAEEAMLAADDWRILVDIFTSPGGLEESIRIYLARGLHPVPHPAGFVVEDEELDMDLAWLSLDELVTRIYAGQIENPNMVTGTLALRLAILDGRLDALRPADAPWPARAVRAERRKEIEALG
>NZ_CP010341.1|WP_063493758.1|1490973_1491969_-|site-specific-tyrosine-recombinase-XerD
MADGAAHPPSHGNKPVSGPTAGRLGNWLEDYLDHLGVERGLSPNTVAAYRRDLTRYLRHLSSRGIDDPSRITTADVTSFEEELSRGDASHKALAPSSVGRAVVAVRMFHGFAAREGLVDHNVAAALHPPRAGKRLPKALGVDEVARLIDSIERQTPIGLRDAALFEVLYGTGARISEALSLDVDDLTRVLVDPDGPLRVVGKGNKERVVPLGSYARSAVQAWLVRGRPALAERAREFTPALFLNTRGARLSRQSAWEALRTRARQAGITADIGPHSLRHSFATHLLDGGADIRVVQELLGHASVSTTQIYTEVTAQQLREVYSSSFPRAHD
>NZ_CP010341.1|WP_081081451.1|1501822_1502563_-|hypothetical-protein
MIANVVAIAATMISVHVKMAVPAGGVMSAAGMTVPPAALDRPVVGEMTIGAVPSAGMLLVTRIARADGRTIAVAQDGATMTAAAVRPGVTGTGASATVLHAMADGVRRRARMVAVLASATAMIAVTHVDVVRSGRVTIVVPATTGARIAIGRARVSAPARGRGVAIRVVRIVVTATRGDRAEAAPSEAASVVAGRVDALVSAGVAVVSRPVVVRTAAPDAVAMIGKSVMLHPGWRSLPTSPASTRH
>NZ_CP010341.1|WP_044636210.1|1508759_1510028_-|tyrosine--tRNA-ligase
MNALLDDLTWRGFVANSTDRDALAAHLDAGMVTSYVGFDPTARSLHIGHLMQLILARRLQQAGHRPLLLIGGSTGLIGDPKMTGERVMNTKETVSAWVASLAEQTKKYVSFEGENGSRIVNNLDWTGPLSALDFLRDIGKHFSVNRMLARDVVARRLEDGISYTEFSYVLLQSFDYAELHRLYGCTLQTGAQDQWGNITAGADYIRRTTGDIVHGLVTPLLTKADGTKFGKTEGGTVWLDPELTSPYAFHQFWLNAEDAKVMDYLKIFSFRSHDELAELAEQTEQAPYKRLAQRALADDVTDLVHGVEARKAADEAARALFGRGELAALDDATISAVMGEVKATEVSTRDGELPTVVDALAASGVVASKSAARRTIQEGGAYVNNAKVTDPDARLSADQLLAGRYAVLRRGKKTVGGVILTR
>NZ_CP010341.1|WP_044636211.1|1510155_1511577_-|argininosuccinate-lyase
MSDHQEGFLWGGRFQGGPAEAMFQLSVSTQFDWRLAPEDIAGSIAHASALHRAGLLGDADYEQMEAALRGMLEEVHSGELRPAPTDEDVHGALERILTERVGPVLGGRLRAGRSRNDQIATLIRMYLRREIRALGQDVVEVITALCAQSDAHPRAIMPGRTHMQTAQPVLLAHQLLAHAWPLLRDLDRFTDLDKRLAVSPYGSAALAGSSLGLDPELVAHELGFTGSVLNSIDGTSARDLVSEAAYVLAQIGVDCSRLAEDVIAWTTPEFGFAKLDDAWSTGSSIMPQKKNPDVAELARGKAGRLIGNLCGLLATFKGLPTAYDRDLQEDKEPLFDGIDQLHVLLPALAGMVGTLAFDEERLAADAPRGFSLATDMADWLVRQGEPFAKAHDVTGRAVKFCEAHGIGLPELSDQQLAAIDPALTADVRKVLNIQGSVASRDARGGTAPVRVAEQLAAVKQQSAHFEKWAGSDY
>NZ_CP010341.1|WP_044636212.1|1511580_1512135_-|hypothetical-protein
MTVSQRSTSSERSRSNRVARQGRILELIRSHEIGSQAELADMLADDDISVSQGTLSKDLLDIGAVRVRSGSGLLVYAPPGSEIASDHAMHEQRLARICAEVLVSADASANLAVLKTPPGAAQYFASAIDRVALDSVAGTIAGDDTVMVISRSGDGGAQMAEYFVSMARTGRPADGDGNEAERRD
>NZ_CP010341.1|WP_114178845.1|1512131_1513400_-|acetylornithine-transaminase
MRESARWFAPRRETTVSNGDAASGLNQQEWGARYDRTIMNTFGHPKRVLVRGEGAVVWDADGKRYTDFLAGIAVNALGHANPEVNRAVAEQMNTLGHISNIFASPTQIRLGEELVALASRESAPGTPARVFFANSGTEANEAAFKATRMTGRKKIVAMIGSFHGRSMGSLAITYNEHYRKPFEPLPGEIIWTPYGDVAALEKVVDDTVAAVVTEPIQGENGVIEPPDDFLPAVRRITAEHGALMWIDEVQTGMGRCGEWFAHQRLDVVPDLISVAKGLGNGFPMGACIALGPAADLFGPGEHGTTFGGNPVACAAGLAVISYIKSHDLLDHVKQMGLRLADKVMSLDDPRIATVRGRGLLRGIVLTKPLGAEAAAAALEAGWIINSPRPSVLRIAPPLIVTAEQIDEFVDVLPSLLDAAENR
>NZ_CP010341.1|WP_080516104.1|1513347_1514361_-|acetylglutamate-kinase
MHGGRGPPCGFGAGHRVDERPDLRLCQGKRGVLIVSRTRSLDHDAAIAKAGTLIEALPWLEQYAGKIIVIKYGGNAMIDDELKHAFAQDIVFLRRCGVRPVVVHGGGPQISRMLKRLDIKTEFRSGLRVTSPEAMDVVRMVLVGQVGRELVNLINEHGPFAVGLSGEDARLFTARPKTVMINGKPEQLGQVGEVTEVRPESVRDLIDAGRIPVVATVAPGDHEQVFNVNADTAAAALAVALGAERLVMLTDVAGLYADWPNSEDVITQISPGELERLLPQLESGMKPKMEACLRAVRGGVSRATVIDGRVQHSLLLEIFTNEGIGTMVRAEEGNNGE
>NZ_CP010341.1|WP_013161266.1|1514255_1515407_-|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MSVTTPRGFRAAGVAAGLKSTGKPDLAVVVNDGPDQTAAAVFTSNRFCAAPVIWSRRAVADHRLHAVVLNSGGANACTGEAGLGDSAETAHHLAEQLGVDDHDVAVCSTGLIGERLPMDKILTGVDEAVVGLSGEGGMDAANAIITTDTHAKTAVFQGDGWSIGGMAKGAGMLAPQLATMLVVITTDLSLTADQARAALTASTEVSFNRLDSDGCMSTNDSVLLLASGASGITPDTDEFTAALAEICLNLGHQLLGDAEGSSHDITIHVVNAASERDALVVGRSIAASNLFKCAIFGNDPNWGRVLSSMGTTDAGFEPSRVDVSFNGVMLCRGGEIGDDRALVDLSPRECTVVVDLHAGSEQAIVWTNDLTYDYVRENAEYSS
>NZ_CP010341.1|WP_013161267.1|1515403_1516435_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MSYTAAVAGCTGYAGGEVLRLLAGHPEIEIGALTAGSNAGTLLGQHHPNLVPLYDRPVLETTPENLAGHDVVFLALPHGASTELAKQLPDDVLVVDCGADHRLTDEARWQRFYPSPYAGAWPYGLAELPGQRELLANTKRIAVPGCFVATVILGLLPAMTHGLTDGHDITIAAASGTSGAGKALTPRLLGSETQGSVSAYGVGGIHRHTPEILQNLEVLGATDPTISFTPLLAPMSRGILAVITAPVDTSVSAEQITAAYHDAYDAEPFAQVLPAGVWPASQNVLGSNSVCVNATVDPDAGRMVIVSTLDNLVKGTAGSAVQAMNLALGLDETTGLTTIGVAP
>NZ_CP010341.1|WP_013161268.1|1516599_1517814_+|pyridoxal-phosphate-dependent-aminotransferase
MTGFHQATRLQGVRYDVRGKNMVEAQAMEARGEHILKLNIGNLAPFGFATPDSVVRSVATHLPESEGYSDARGVPSARAAVAEYYQSKHLDVDPQQVLIGNGVSELISLTLSAILNHGDEVLVPAPDYPLWTAQITLCDGKAVHYLCDETRGWNPDPDDIAAHITARTKAIVLINPNNPTGAVYSADTVRAIVQLAREHDLIVLSDEIYEKIIYHGTHTYTAHETGDDVLCLTYSGLSKAYRACGFRAGWVVFTGSLQRAHNLLEGVDLLANMRMCANVPAQYAIEACLSGYQSIDELTAPGGRFEEQLRLSHDLLDQIPGVNCVPAAGALYLFPQLDPERYPITDDEDWALGLLREKKILISHGRGFNWPNPDHFRLVALPEDAVLREALGRLAEYCEETRRD
>NZ_CP010341.1|WP_013161269.1|1517941_1520470_-|phenylalanine--tRNA-ligase-subunit-beta
MKAPISWLRSLVELPHGVTTQQLADAFTRTGLQVEHIELMGNQVTGPVVVGRVVSFVEEPQKNGKTIRWCHVDCGEQFNITDENPDVTDGRGIICGADNFAQGDYVVVALPGAELPGGFKISSRRTYGHVSDGMICAADELGIGEDHTGIIVLPANEASRAGLGSEAMALLGVPDEILDIDVTPDMSYCLSMRGLSREAAQAFDVPYNDIYSRRVPEPSQGAYPVRVESDDCELFVDLVVHDINALAPTPTWMRHRLEASGMRSISLPVDITNYVMLESGQPLHAYDADQLLGPIVVRKAHQGERLTTLDSVDRELSAEDLLITDDSGPIGLAGVMGGLNTELSDSTRNVVIEAAHFSPGTIGRTYRLHKLPSEASKRFERDTDIGVCCAAARMAARLLVELAGGTIADGATVVGRVPQMPGQSIDIGLPARILGARIEPDQVLSVFKGSDIEVTRRGERLSLVPPTWRTDLVDPYDYVEEVGRKLSLEVVNAVVPRAEAGQGLTAVQKSRRAVLNAIAEAGFVEVVTLPFVGTDDIDRLGLPAQADQHRLVKLANPLSDAQPYVRTTLLPGLFAAINRNTSRGMDDVALFEQGSVFLGGELPPAPMPDVSHRPSDAEIDALLNSLPDQPHMLSAVLAGNWLPARWNGPAEPVDWTHAVLFAQTAADAVGLRLIRSQAEIMPWHPGRCAELSIRNSDGDLVSLGAAGELHPRVIEACGLPARSCAVEINLDVLLANAPTGGEVHELSPYPLTKEDVALIVDDTVAAADVEEVLRTGAGPLLESIALFDIYSGEQTGQGKKSLAFSLRFGSPERTLTQSEAAQARDNALAAAVSELGAQARQA

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Crispr_ID: NZ_CP010341_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010341_5

1636530-1636637

Orphan

Consensus_repeat	Method
GGTGCAGATCAGTGCCGCCGTGATGACCGAGCCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010341_5

>merge|NZ_CP010341|5|1636530-1636637|CRISPRCasFinder
GGTGCAGATCAGTGCCGCCGTGATGACCGAGCCCACGAGGACTTCGGGAGTCAGTTGGGGTGCCGCCGGGGCGGTGCAGATCAGTGCCGCCGTGATGACCGAGCCCAC

>NZ_CP010341|5|5|1636530-1636637|CRISPRCasFinder
GGTGCAGATCAGTGCCGCCGTGATGACCGAGCCCAC	GAGGACTTCGGGAGTCAGTTGGGGTGCCGCCGGGGC
GGTGCAGATCAGTGCCGCCGTGATGACCGAGCCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010341.1\|WP_044636772.1\|1628045_1628768_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP010341.1\|WP_044636238.1\|1647637_1648414_-\|nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350158
NZ_CP010341.1\|WP_013161395.1\|1643581_1644616_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|274743
NZ_CP010341.1\|WP_013161399.1\|1648530_1649985_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|236126
NZ_CP010341.1\|WP_052809138.1\|1642205_1642952_+\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	unknown	unknown	gnl\|CDD\|236578
NZ_CP010341.1\|WP_013161394.1\|1642953_1643547_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293792
NZ_CP010341.1\|WP_013161396.1\|1644806_1646891_-\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP010341.1\|WP_013161391.1\|1638377_1638914_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP010341.1\|WP_013161379.1\|1624176_1625388_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP010341.1\|WP_013161380.1\|1625551_1626556_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP010341.1\|WP_044636235.1\|1635363_1636017_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP010341.1\|WP_144406050.1\|1626669_1628049_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225669
NZ_CP010341.1\|WP_044636233.1\|1631905_1633900_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP010341.1\|WP_036942389.1\|1628833_1629817_-\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
NZ_CP010341.1\|WP_036942403.1\|1637069_1638236_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP010341.1\|WP_044636237.1\|1646965_1647634_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP010341.1\|WP_080516110.1\|1638928_1641994_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP010341.1\|WP_144406051.1\|1634020_1635361_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP010341.1\|WP_044636232.1\|1629860_1630829_-\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689
NZ_CP010341.1\|WP_080713585.1\|1630825_1631710_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450

Protein	Function_ID	Function_description	E-value
NZ_CP010341.1\|WP_044636772.1\|1628045_1628768_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.17882e-96
NZ_CP010341.1\|WP_044636238.1\|1647637_1648414_-\|nucleoside-phosphorylase	gnl\|CDD\|350158	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family. This subfamily is composed of uncharacterized members including Streptococcus pneumoniae hypothetical protein spr0068. The nucleoside phosphorylase-I (NP-I) family members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases such as purine nucleoside phosphorylase (PNP, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases such as AMP nucleosidase (AMN, EC 3.2.2.4) and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). Members of the NP-I family display different physiologically relevant quaternary structures: hexameric (trimer-of-dimers arrangement of Shewanella oneidensis MR-1 UP); homotrimeric (human PNP and Escherichia coli PNPII or XapA); hexameric (with some evidence for co-existence of a trimeric form) such as E. coli PNPI (DeoD); or homodimeric such as human and Trypanosoma brucei UP. The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	4.9649e-85
NZ_CP010341.1\|WP_013161395.1\|1643581_1644616_-\|TerC-family-protein	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	3.51093e-124
NZ_CP010341.1\|WP_013161399.1\|1648530_1649985_-\|30S-ribosomal-protein-S1	gnl\|CDD\|236126	PRK07899, rpsA, 30S ribosomal protein S1; Reviewed.	0
NZ_CP010341.1\|WP_052809138.1\|1642205_1642952_+\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	gnl\|CDD\|236578	PRK09583, PRK09583, mycothiol-dependent maleylpyruvate isomerase; Reviewed.	1.72238e-85
NZ_CP010341.1\|WP_013161394.1\|1642953_1643547_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	2.92536e-38
NZ_CP010341.1\|WP_013161396.1\|1644806_1646891_-\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP010341.1\|WP_013161391.1\|1638377_1638914_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.42819e-06
NZ_CP010341.1\|WP_013161379.1\|1624176_1625388_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP010341.1\|WP_013161380.1\|1625551_1626556_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP010341.1\|WP_044636235.1\|1635363_1636017_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.36765e-74
NZ_CP010341.1\|WP_144406050.1\|1626669_1628049_-\|hypothetical-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	0.00538147
NZ_CP010341.1\|WP_044636233.1\|1631905_1633900_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP010341.1\|WP_036942389.1\|1628833_1629817_-\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	4.18456e-115
NZ_CP010341.1\|WP_036942403.1\|1637069_1638236_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	6.59987e-26
NZ_CP010341.1\|WP_044636237.1\|1646965_1647634_-\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	3.99909e-83
NZ_CP010341.1\|WP_080516110.1\|1638928_1641994_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP010341.1\|WP_144406051.1\|1634020_1635361_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.6935e-38
NZ_CP010341.1\|WP_044636232.1\|1629860_1630829_-\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	7.24306e-82
NZ_CP010341.1\|WP_080713585.1\|1630825_1631710_-\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.289e-157

>NZ_CP010341.1|WP_044636235.1|1635363_1636017_+|response-regulator-transcription-factor
MIRVLLADDQTLVRTGFEMILGVEDDIEVVGQAADGRQAVSAAARLHPDVVLMDVQMPTMDGIAATREVVAADSARVIVLTTFDRDDYLFDALGAGASGFILKNSDPTELVAAVRAVANGDALLSPSVTLRVIRAMAQGHAPREVTPGADAELARLTDREVEVLRALARGLSNAEIAAELFVSEATVKTHVSNVLSKLGLRDRVQAVAHANQHGLVS
>NZ_CP010341.1|WP_144406051.1|1634020_1635361_+|sensor-histidine-kinase
METPTAPVRPRPWSGFLSWAGINDPWQRPVPRVGREDVLVVVALTVLAAVLTELQRGLGSVGTPPSSRPVTYALLAATCVPLLWRRRYPCTSAVVAYVAFMAVSMMMPMVGGQLILLVAFFLSMYSAAAWAPNRPGMLVTIGVVAGTIIFWLIWSLAVGAGAERLRGELNTLDPGNALISPLVAYLLFNLLINGAFLAGALIFGVSSWRRARGNAEIVAQQAQLTAQADQLRDEAVLRERLRIARDLHDVVGHHVSVTGIQAAAARRVLERDPARAAAALAVVEESTRQAVTQMRDLLGTLRAVDEDAADSPHGAPTLVQLPDLVAAQQGHDLQVSLDVVENPPGAAAQVPPVVALSLYRAVEEALTNVRRHSTAHEAQVVVRVEAGRYAEAEILDSGLPRPDSTGSGLGLLGMRERAKNVGGTVEAGPRMIGGYRVRMRLPLEEG
>NZ_CP010341.1|WP_044636233.1|1631905_1633900_-|excinuclease-ABC-subunit-UvrC
MADPSTYRPAPGSIPTDPGVYRFSDEHGQVIYVGKAKNLRNRLNSYFHDISALHPRTQRMVRTAAHVQWTVVQNELESLQLEYTWIKQYDPRFNIMYRDDKTYPWLCVTWSDEYPRVYVGRGAKRKGYRYFGPFGQAWAVRDTVDMLLRIFPMRSCSAGVFRNAQAAGRPCLLGYIGKCSAPCVGRVSAAEHREIADDFCSFWEGRTRQLQHKLTKQMRQAAENEEFERAAVLRDSLGALDKATERNAVVLPDGTDADAIAFALDPLELAVQVFHVRGGRIRGERSWIADRADDADESELVESFLLQLYSDSRVPHEILVPVMPPTAPVLTEMLGEQRGGRVNLHVPQRGDKRVLLDTVAKNATEALDRHKAKRAADLATRNQALEELQGALGLPEVPLRIEGYDISHLQGTQVVGSMVVFEDGLSRRSEYRRFVIKSFEGSDDLRAMDEVLTRRFSRLINDRRAMEEASRQGGPGLIDPETGKPLKFAYAPSLVVIDGGPLQVEAAQNAITALGLAEVRVIGLAKRLEEVWLPDQDFPLILPRDSEGLYLLQRVRDESHRFAITHHRQRRSRAMVESVLDDVPGLGAVRRKTVLSHFGSLRKLRAATVDQIAELPGLGAATAQAIVDALRADQPGQAINVTTGEIVSEGPAPHEDASGAGQPA
>NZ_CP010341.1|WP_080713585.1|1630825_1631710_-|RNase-adapter-RapZ
MNQTLAPSLPKHPRTVIITGLSGAGRRTCAHAMEDLGWFVVDNLPPSMLPQLIGTANNSGFTRLAVGLDVRSRDMFEQLPMVFTQLEADGISPEIVFLEASDEVIVRRQESSRRRLPLQGDGRLMEGIIKERRMLSDLRASADMVIDTSNLNVHQLTARVAHIYGGDVADTLRVQVMSFGFKNGVPLDADLVFDVRFLPNPHWVPELRPQTGLSKEVSNYVLEQPGAEEFLTTLDHLFEVVTPGYLREGKQQVTLAIGCTGGKHRSTAISEALAGRLRHRGMQVSVLHRDLGLE
>NZ_CP010341.1|WP_044636232.1|1629860_1630829_-|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MSGGELPSVVALGGGHGLSASLSALRQVTDQLTAVVTVADDGGSSGRLREEFGGLPPGDLRMALAALCGDDHNGRRWASVLQSRFRSEGPLDGHAVGNLLIEGVWQAISDPVRGLGLVGELVDARGRVLPASTEPLNIEADVLGLEVEFPNEVHVLRGQHMVASTNGRVQAIRLLPADPPACPQALTAIERADYIVLGPGSWFTSVLPHLLIPQLAAAIIASPAHKILTLNVTSGLETAGFSPSRHIELIAEHAPGLRLNTVVADEAFAASDAALAETCATLGADLVVDDVAMHDHTARHDRLRLAAVYREVMGGAEADLEM
>NZ_CP010341.1|WP_036942389.1|1628833_1629817_-|DNA-binding-protein-WhiA
MALTQQVKAELATVGELKPEARAAEVAAMLRFAGGIHVVSGHIVIEAELDSGNAARRLRTALAELYGFDSEVVVVNASGLRRRTRYVVRLVRHGEALARRTGLIDQHRRPVRGLPAQVVGGSMQDQVAAWRGAFLARGSLTEPGRSMGLEVTCPSSEAALALVGCARRLGISAKAREVRQMDRVVVRDGDAISALLTRMGAHESVLAWEERRMRREVRASANRLANFDDANLRRSARAAVASSARVERALEILGDDAPDHLRAAGELRLAHRQASLEELGHLNDPPLTKDAVAGRIRRLLALADKTATDRGVPTTEAALTPEMLTER
>NZ_CP010341.1|WP_044636772.1|1628045_1628768_-|ABC-transporter-ATP-binding-protein
MSPDDPRDVLSAVGLVKNYGPVSALAGVDLAIRHGETVAVMGPSGCGKSTLLHVLGGILLPDEGDVLLKGGSIRALSDAERSALRLSSFGFVFQDGQLLPELTNEENVALPLIMAGLSRREAVARAHEWLGRFGLAGIEQRRPGQLSGGQAQRVAIARALVHGPGVVFADEPTGALDQGTGREVMEVLTSSVSANGASLVMVTHDPGVAAWCSRTVTMSDGHIIADTATEAGMTPGESLR
>NZ_CP010341.1|WP_144406050.1|1626669_1628049_-|hypothetical-protein
MRPQSLVRVAALVTRPGRGGSARDARGVLTVLSVVAYAVVQALALSVAAGVMVFVDHDRHPSNRFQADNSGIYVLLAMLAGAVLIAPLVVLCAAAARMGALRRARRLSIVRLLGGSPAEVRTIGVIEAFGHALVGVVGGTVVYLATLPLWSPLHFEGQALSAAAMWIGPLGLGLVSLAVLVIATASAVIGLQRVAISPLGVVRRTAAPGLKKARLIVPLVIVVGWAVAGQLISDTGFVVVVGSIVLALAALLAGVDFVGPLLVQWLGNAMASRANSAASLIAGRRIADAPKATWRAVGALSMASFLASFTAMLPLFGNGSDSDQDMVVLLGDMRQGVLLTLSIAFLLTAVSSGLNQAAKILDRIGDARTLSVAGAPRGLLTAIRRREVLVPVVVATVMPALAGLAFQFPFTGPLITQRPDMLITLLATLVAGIGLVFAVQECCSPLQTRLLREQQRSTD
>NZ_CP010341.1|WP_013161380.1|1625551_1626556_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVKVGINGFGRIGRNFFRAMVDQKADLDIVAVNDLTDTKTLAHLLKYDSILGRFPGEITYDDNSITVDGHKIQVCEERDPANLPWKDLGVEVVVESTGLFTDGEKAKAHIAAGAKKVIISAPAKNVDATFVIGVNEQEYDTSKHNIISNASCTTNCLAPLAKVFEDEFGIERGVMTTIHAYTGDQRLLDAPHKDLRRARAAAINLIPTKTGAAQAVALVIPALKGKFDGLAVRVPVPTGSLTDLSFIPGREVTVEEINAAVKKAAEGPLKGILAYTEDPIVSTDIVTDPHSSIFDASETKVIGNLVKVLSWYDNEWGYSNRLVDITELVADKL
>NZ_CP010341.1|WP_013161379.1|1624176_1625388_-|phosphoglycerate-kinase
MRTLSDLGDLRGKRVVIRCDFNVPLKGEEITDDGRIRAALPTLEALLGQGARVTAMAHLGRPKGKRDPKLSLAPVAKRLADLLGQHVEFATDTVGLSALKASANLNDGEIALVENVRFEPAETSKDDAERMELAKKYAELGNYFVSDGFGVVHRKQASVYDIAKLLPSAAGELVGKEVSVLSKITHDPERPYVVVLGGAKVADKLAVIDNLLKVADTLIIVGGMAYTFLRAQGKQVGGSILDASKVDACRGYLADAKAAGKSILLPVDVRVAKGMDLDARTVDGPVSVVSVDDIPADQEGLDIGPATEKLFAEQIAGARTVFWNGPAGVSEIDELANGTRAIARALATGDAFSVIGGGDSAAAVRKFGYTDDQFSWISTGGGASLEYLEGKELPGLAVLDKEN
>NZ_CP010341.1|WP_036942403.1|1637069_1638236_+|ABC-transporter-permease
MNKRQWTLVAGHEMWVKLANKSFIISTLTMVVLMAAGIAFGAWQANKTDTMSVVVTTQQAQQVGERAGALAGAANDHSELSVRHADSDDQARSEVTAGDADAWLHSDGTSWHLTFKDDTKSSLENYVSAAVSTNVVNDLAGRAGEPLDRAHAAMTVSTDVLESSENPGGELVGIVFAMVFMFSSLMFGMQIAQSVTAEKQSRIVEILAAVVPARQLMLGKVAGNTAVALLQMVLYAAIALIGVAVTPLSTMLPSLSGGIGWFLAFFLVGFLTLSCLWAAAGAMAPTTEDLQSTAQPLTWLLMVVYFAGFLAKGNLAVVLSYVPVISSVVMPTRLAMGTAHWWEGLIALLITLAFTVVAIWFGSRIYRRALLQTHGRVSIREAMSHESL
>NZ_CP010341.1|WP_013161391.1|1638377_1638914_+|GNAT-family-N-acetyltransferase
MLQWPFPQTSFVSGDLTIERWDAQRDMDRLWRALQAPEVWQFNPRGVPLDAQDLARRMGQRTDGPERLTWTVVLRGEVVGTTSHFRAGEAVEIGATYLTPSTWGTGLNLRVKRVMVTMARSNDASGIIFRADDLDERSNKALLKLGASFTHKSAEKVLRADGTRRITRFYRLDNDTCI
>NZ_CP010341.1|WP_080516110.1|1638928_1641994_-|excinuclease-ABC-subunit-UvrA
MEPVNDRLVIRGAREHNLRNVSLDLPRDKMIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGLSPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLYARIGHPHCPICGAPISRQTPQQIVDRLLGLDEGTRFQILAPVIRGRKGEYTELFRQLATDGYARVRVDGEVHQLDDVPALDKQRKHDVDVVVDRVVVKASAKQRITDSIETALGLANGVVSVDFVDREPKDPMRLRTYSEKMACPNGHDIEMDELEPRQFSFNSPWGACPACTGLGTQLEVDPTLVVPDETLTLAEGAIAPWSTPTLRNHYAKVFQGLGEKEGFDVDTPWQDLPGTAQAFILKGYDNPVYVHFRNRFGRNRTYTQKYEGILPYVRRRFDEAETDAARDRWGGYLREIPCSTCHGARLKPSSLAVTVGEVNISTLSDMSISEVTGFVDQLDLTDREKQIAERVVKEIRERLRFLLDVGLDYLTLSRPAGSLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNRRLIETLLRLRDLGNTLIVVEHDEDTIRAADWVVDIGPGAGEHGGHVVVSGTLDDLLASRESITGAYLTGRRRIEIPAQRHRPNGHTIAVHGAAENNLRGIDVSFPLGQFIAVTGVSGSGKSTLVNQILYTALAKRIYGAKAVPGRHHSITGAENIDKIIHVDQSPIGRTPRSNPATYTGVFDKIRGLFAQTPEAKMRGYQPGRFSFNIKGGRCENCHGDGTIRIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSISEVLDMPIEEAAEFFEPIQSIHRHLATLVEVGLGYVRLGQPATTLSGGEAQRVKLASELQKRSTGRTLYVLDEPTTGLHFDDIRKLLTVLGKLVDGGNTVVVIEHNLDVIKTADWVIDMGPEGGARGGMVIAQGTPEQVAADPDSYTGQYLAEIVTPDAAKGPLEPPAEVAAAPGPAPKGTRGRASKAGKPATRTSGAKKSGARASATGRGTATKKAVTTKKKTQRKAA
>NZ_CP010341.1|WP_052809138.1|1642205_1642952_+|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme
MPSVEEQSELPGAGDMRPIRLRKLEATQRLLGDTIAIDERSWQEPCHLPGWTRAHVATHLARNADAFTRVAAGMMTGINTPLYISERERFNDIERGSERRALDLQVDLDTSAGRLYHGLDELGDIDGSRLVEISPGRKLRIDLLPLARLREVALHHVDLACGFTVLDMDDDIARWVLEWTCYWIGDDPRLAPLQIESTSGFHTRLGGTGRPTAVGGSDALLLGWLTNRLPDDPSVAKTLPALPEGWWA
>NZ_CP010341.1|WP_013161394.1|1642953_1643547_+|MBL-fold-metallo-hydrolase
MKWESRSVGSMENNAYLLTSSDDHLVLVDAATEPATLLEWIGPRTLDAVITTHQHFDHIGALAAVVEATGATPWCGGPDAASIAEQTGVQCRTVWTGDTLLVGDEALEVIGLVGHTPGSIALVLPTNPTVLITGDSLFPGGVGRTKDHDEFDSLFGDVTTKLFDRFGDDTLVLPGHGKSTTLGAERPHLPEWRARGW
>NZ_CP010341.1|WP_013161395.1|1643581_1644616_-|TerC-family-protein
MHISLLVWIVTIVVMLAVLTIDAVMLSRRPHVPSIRESVTAVGFYVALAILFGIAMHFWAGPAYSGEFFAGWLTEYSLSMDNLFIFLIIMTKLSVPRKAQQFALLVGIMLALLFRGIFIGLGAALISRLAWIFFIFGAWLIYTAVGLVRDFITGSSSEEEEDAADGPAVRWLKKIVPTTGDYESDKLFVRVDGKLLATSLFFVVVALGTTDVMFALDSIPAIYGLTQEPYIVFTANVFALMGLRQLYFLLGGMLKKLVYLPIGLSVLLTFIGAKLVLHACHHYGWDAKLGFSVEIPTSISLIVIVAILAVTALASVVQMLHARRTGAVEGPAPSSPGAGSGDGS
>NZ_CP010341.1|WP_013161396.1|1644806_1646891_-|excinuclease-ABC-subunit-UvrB
MRPVDTITRTVAPFKVHADFEPSGDQPQAIEELARRIEAGEQDVVLMGATGTGKTATVAWLAERLQRPMLVMQPNKTLAAQYATELRGFFPDNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSLNEEVERLRYSATNSLLTRRDVIVVATVSAIYGLGTPQEYVDQMINLKVGQEWDRSNLLRRLVEVQYVRNDMAATRGTFRVRGDTLEIFPMYEEFAIRVEFFGDEIEALTTLNPLTGEIVSEDKQVYVFPASHYTAGPERMARAITDIEAELADRLAELEKDNKLLEAQRLRMRTNYDIEMMRQIGTCSGIENYSRHIDGRPAGSPPNCLLDYFPEDFVLVIDESHVTVPQIGGMYEGDMSRKRTLVDHGFRLPSAMDNRPLRFEEFTERIGQTVYSSATPGPYELARGNGVVEQIIRPTGLVDPEVIVKPTHGQIDDLMGEIKARAKKDERVLVTTLTKKMAEDLTDYLMEHGVRTRYLHSEVDTLKRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVSILDADKEGFLRSDRSLIQTIGRAARNVSGQVHMYADQMTPSMTKAIDETNRRRQIQVDYNKAHGVDPQPLRKKIADITDMLVREDADTDKLLADTRGSGHEASALPTTSDKHKRGENLPATELAGLIQELTAQMHSAAGELQFELAARLRDEIADLKKELRGMVEAAK
>NZ_CP010341.1|WP_044636237.1|1646965_1647634_-|dephospho-CoA-kinase
MATNPASGAPRKPARDTRQRSHPGQTLVGLTGGIASGKSVVAGMLTDCGAVVIDHDRLAHDVVDVGTPGLQAVVRRFGDGVLTPDRALNRSRLGAIIFGDARARHDLDAIIHPLVWKASDELEDRAPADAVVVHDVPLLVETGQQDDFDLVVVVDVPEPLQLRRLIARNRLSRQQALARIGAQASRAERLAAADMVIDNSGSLDATRTQVDTLWRRLTGDGH
>NZ_CP010341.1|WP_044636238.1|1647637_1648414_-|nucleoside-phosphorylase
MLHTDKFPVLEFDDDPHDLIGQGEAKTVEADRFPSRAVFAFLGPAIDEYAADNKLAEIDRIEMIGDVFPVYRAKVPTGDVALMRMPLGSPAAVMCTDYLFRFGVKRALAVGSCGALEALAEGELFVPTRALRDEGTSYHYLPASPWVDLDPTMRGHIEAAVARAGYHTSSAPVWTNDAFYRETPEMLAHRLAQGCRIVDMECSAMAASAQLRGADFAQLFYTADSLGSPEGHEARDWGYSERDRALQLALDAISRAQA
>NZ_CP010341.1|WP_013161399.1|1648530_1649985_-|30S-ribosomal-protein-S1
MTSSTEASNQVAVDDIGSAEAFEAAVDSTIKYFNDGDIVKGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDPFEVVSVGDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLIVDIGLRGFLPASLVEMRRVRDLQPYVGQELEAKIIELDKNRNNVVLSRRAWLEQTQSETRHNFLQQLQKGQIRKGIVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMERERVSLSLKATQEDPWQLFARTHQIGEIVPGKVTKLVPFGAFVRVEEGIEGLVHVSELAERHVEIPEQVVSVGDEVLVKIIDIDLERRRISLSLKQANEGVDLRAEDFDPSLYGMVANYDENGNYIYPEGFDPETNEWKPGYEEQQAAWEAQYAEAQARWQALKKQAEAAEEADQKASVEAATSYTAATPEAPAEEAGSLASDEALQALRDKLSGN

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Crispr_ID: NZ_CP010341_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010341_6

2578820-2578897

Orphan

Consensus_repeat	Method
GGCGGCACGCGACCAGCTGACGGCG	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP010341_6

>merge|NZ_CP010341|6|2578820-2578897|CRISPRCasFinder
GGCGGCACGCGACCAGCTGACGGCGCGGCCATGCACGGGGCGGCCTCGCGCTCGGCGGCACGCGACCTGCTGACGGCG

>NZ_CP010341|6|6|2578820-2578897|CRISPRCasFinder
GGCGGCACGCGACCAGCTGACGGCG	CGGCCATGCACGGGGCGGCCTCGCGCTC
GGCGGCACGCGACCTGCTGACGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010341.1\|WP_080774576.1\|2565492_2566632_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP010341.1\|WP_044636511.1\|2587097_2588102_-\|low-temperature-requirement-protein-A	unknown	unknown	gnl\|CDD\|377704
NZ_CP010341.1\|WP_052809220.1\|2581979_2583440_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010341.1\|WP_044636506.1\|2580073_2581099_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377369
NZ_CP010341.1\|WP_044636931.1\|2588805_2590020_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP010341.1\|WP_044636503.1\|2566631_2567327_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP010341.1\|WP_015069156.1\|2572970_2573456_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|379804
NZ_CP010341.1\|WP_027586302.1\|2567358_2568066_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010341.1\|WP_080774577.1\|2573754_2574942_+\|2,3-diaminopropionate-biosynthesis-protein-SbnA	unknown	unknown	gnl\|CDD\|274872
NZ_CP010341.1\|WP_044636505.1\|2577000_2578710_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143509
NZ_CP010341.1\|WP_044636512.1\|2588468_2588705_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010341.1\|WP_044636929.1\|2575030_2576989_+\|FAD/NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|379196
NZ_CP010341.1\|WP_044636508.1\|2583718_2586292_+\|hypothetical-protein	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|350668
NZ_CP010341.1\|WP_080774578.1\|2586900_2587200_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377704
NZ_CP010341.1\|WP_027586299.1\|2563978_2565457_-\|multicopper-oxidase-family-protein	unknown	unknown	gnl\|CDD\|225043
NZ_CP010341.1\|WP_027586303.1\|2568297_2569113_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP010341.1\|WP_044636672.1\|2579068_2580070_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP010341.1\|WP_044636504.1\|2569109_2570771_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP010341.1\|WP_044636513.1\|2590352_2591207_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP010341.1\|WP_044636507.1\|2581221_2581983_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010341.1\|WP_080774576.1\|2565492_2566632_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.86018e-58
NZ_CP010341.1\|WP_044636931.1\|2588805_2590020_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	4.5755e-69
NZ_CP010341.1\|WP_044636506.1\|2580073_2581099_-\|hypothetical-protein	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	0.00117779
NZ_CP010341.1\|WP_044636503.1\|2566631_2567327_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.79643e-85
NZ_CP010341.1\|WP_015069156.1\|2572970_2573456_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|379804	pfam16242, Pyrid_ox_like, Pyridoxamine 5'-phosphate oxidase like. This domain, approximately 140 residues in length, is mainly found in general stress proteins in various Xanthomonas species. It is composed of a six-stranded antiparallel beta-barrel flanked by five alpha-helices and can bind to FMN and FAD, suggesting that it may help the bacteria to react against the oxidative stress induced by the defense mechanisms of the plant.	1.42039e-43
NZ_CP010341.1\|WP_080774578.1\|2586900_2587200_-\|hypothetical-protein	gnl\|CDD\|377704	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA). This family consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes.	8.23122e-06
NZ_CP010341.1\|WP_080774577.1\|2573754_2574942_+\|2,3-diaminopropionate-biosynthesis-protein-SbnA	gnl\|CDD\|274872	TIGR03945, cysteine_synthase, 2,3-diaminopropionate biosynthesis protein SbnA. Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme. [Cellular processes, Biosynthesis of natural products].	1.90875e-136
NZ_CP010341.1\|WP_044636505.1\|2577000_2578710_+\|diaminopimelate-decarboxylase	gnl\|CDD\|143509	cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.	4.12058e-139
NZ_CP010341.1\|WP_044636513.1\|2590352_2591207_-\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	6.11495e-115
NZ_CP010341.1\|WP_044636929.1\|2575030_2576989_+\|FAD/NAD(P)-binding-protein	gnl\|CDD\|379196	pfam13454, NAD_binding_9, FAD-NAD(P)-binding.	2.33508e-20
NZ_CP010341.1\|WP_044636508.1\|2583718_2586292_+\|hypothetical-protein	gnl\|CDD\|350668	cd00046, SF2-N, N-terminal DEAD/H-box helicase domain of superfamily 2 helicases. The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.	5.02543e-11
NZ_CP010341.1\|WP_027586299.1\|2563978_2565457_-\|multicopper-oxidase-family-protein	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	5.85149e-85
NZ_CP010341.1\|WP_027586303.1\|2568297_2569113_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	4.30723e-57
NZ_CP010341.1\|WP_044636672.1\|2579068_2580070_+\|IS481-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	3.49928e-22
NZ_CP010341.1\|WP_044636504.1\|2569109_2570771_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.70584e-16
NZ_CP010341.1\|WP_044636511.1\|2587097_2588102_-\|low-temperature-requirement-protein-A	gnl\|CDD\|377704	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA). This family consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes.	4.63489e-53

>NZ_CP010341.1|WP_044636505.1|2577000_2578710_+|diaminopimelate-decarboxylase
MTEEPTLREACQGTPPLSARLEPWMQELLADPATCSSLLERYGSPLNVHDFSALPRNAAELTEVAEGSGVDLRIFVARKANKTLGMVRAAHRAGLGVDVGSERELGQVLEAGVPPHDVVVTAAIKPDPVLRLALESRSLLVLDNLDEVAASRRVAEQVTGARSAEPGRPADGASGAPEPFPVALRLAPKPSDLIPPTRFGESARAWLELIDSGGLGDLLRVDGVHFHLHGYDPTARATALGEALELIDALRERGLAQDGAFVDIGGGIPMSYLDDAEQWDAFWQAHERQAPESGLGGGARAADDDRPAAAPDAGEDAPTAPLTWRREPLRQVYPYHQQVIRGPWLERFLGHEIRPGATAGQALRERGVQLRCEPGRSMMDGCGMTLARVIQRTSASDGVPLVGLEMNRTQCRSTSDDFLVDPILVRTGTRDDATDPSVAGAGQSRASERFEGFLVGAYCIEAELILRRRLAFPQGVAVGDVIALPNTAGYLMHILESASHQIPLASNVERVGGGEAGGSGGDHPSAEVADRSRTGGTDHSSTAVEGSDPRPDVPGFKRDGIDRVLPIRA
>NZ_CP010341.1|WP_044636929.1|2575030_2576989_+|FAD/NAD(P)-binding-protein
MAAAETPLRPAADAPLRLAVVGAGPKALYALEELTALLDAAGSATATADDAGAAASESSAASGLIVTVIDPVAVPGTGAAYHSGQPHHLRLNVTAAILDEPATGDFPAYPSWVQDPYPQLADEPYPPRAVVGEYLAQRWQQMIHGLSRHARVEHARARVTDLRREGSAWHLTTDAAPADVGPVDEVLIATGHAAGHRGALVHHWSSPLPLVPAVLPAERMLSAEQVPPGSRVAVRGGALTFIDACLTLTEGRGGTFTESTEVDASGGTEADVPARLVHHRGPHEPTVIRPITRQGLLLDAKPDPGSPLTGAGERAVEQARARFTSGQGMGPDAVLAIVVDAATAMLEGTPAPKKHASTSGRDARDTVAGSRAAVEHTLSTGAEPDLPRGAGRAEAALRRSIETAQGHRSPGPAWALGRVWQTLYSLVSAALRGSDAPEEEWARFRQAAQVLERFAFGPPLVNARKLLAMIDSGAVDLSWMDGGTGIDGNSIHVAPVTESSDATATGRHVDATATGRHDDAPSGGDVDVVIDAVLTPPGLLNLTDELAGSLLHRGLVQVRPGRRGAMIDEAGSPVGRDDAPLVAPDGRTVAGLALIGRPTEDHVIGHDSLNRHLHHEGRCWARRIADRVAGVDDAAPADAAVPAAPAPAVAPE
>NZ_CP010341.1|WP_080774577.1|2573754_2574942_+|2,3-diaminopropionate-biosynthesis-protein-SbnA
MTHTSGSPQREHTSSTPADDRPPATPTEAATSGPDIPVGLDNGPEGPGVSAAGFASPVPAIVAGISEAIGNTPLIRLDSLFPDSGVEILAKLESVNPGGSTKDRPAMGMVRDALQTGRLAPGGTVVESSSGNLGVALARACNAHDVRFVCVVDARTNATTVRTIQALGGEIDLVSEPDPATGDLLTARFNRVKELLEEIPDAVNLYQYGNPANPRAHYDGTMREIAEATGHQVDVLMAAVSTTGTIGGCSAYIRDHDMSTRAIAVDAVGSVLFGGTAAPRPLPGMGAGVVTELSRQVQPDQVIRVEGLDCVVGARHLARSEGILAGGSTGGIVHALGGLIPSLEPGTRVVFVVHDGGVPYLETVYDDQWVRENLDADTDAIAEGIEQLRRTARRG
>NZ_CP010341.1|WP_015069156.1|2572970_2573456_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MSTDQDFTQQDVVEKLRGTSIVMLTTARADGKLLSHPMTVQDVTDDADVWLFVGLQGDQADALRQGPEVNLNVSEAGSWLSVAGRAKFVEDRAKIAELWDDSAKSYFPDGVDDPNLALVLVTSESAQYWGLPGGKVAGVAQILKAKVTGGDTPGGTGTTEL
>NZ_CP010341.1|WP_044636504.1|2569109_2570771_-|IS21-family-transposase
MGSRVQLFADIRHDARVDGLSIRELARKHGVHRRTIRQALAAAEPPPRKTPVRSAPRLDPYKPAIDQMLLYDLTAPRKQRHTATRILARLRDEHGATDLSYSTVRDYVRTRRAQIELEAGRRVEAMVPQDHAPGAEAEVDFGEVYVILDGVKTKRHMFVYRLSHSGKAIHRVYPTGGQEAFLEGHIEAFHALGGIPTRHIRYDNLTSAVVQVIHGGDRLREENERWVLFKSHYGFDAFYCQPGIDGAHEKGGVEGEVGWFRRNHLTPMPEVASLDELNDQIRVWEVDDNTRRIAGHANTIGQDYRAELDHLAPLPADDFDPGLILHPRVDRSALITVRMVKYSVPAHLIGQRVRVSLRASCVVVFEGRTVVATHPRLGTRGVTRVELDHYLEVLRHKPGAFPGSTALAQARAAGAFTAAHDAFWAAARKTSGDVAGTQELIDVLLLHRSLPAEAVIAGITSALSVGAVSADVVAVEARRHSVSHTAPAPQRGGTVVNLPPRRHTDSNSLIAALPADTWPLPSVTAYDELLRRRQPDPASATAEAHHHTPTGTP
>NZ_CP010341.1|WP_027586303.1|2568297_2569113_-|ATP-binding-protein
MTTTNTSSSRPGGLRRRHGLTEQAAQAAIDQACRRLRLPTIRSVVDEAITTATKEQLTYQGFLAELLLAEVDDRDRRSTLRRIKSAGFPREKWLADFDFTANPNINPATINELATGDWIRRGDPLCLIGDSGTGKSHLLIALGTAAAEQGYRVRYTLATRLVNELVEAADEKQLTKTINRYGRVDLLVIDELGYMELDRRGAELLFQVLTEREEKNAIAIASNQSFSAWTDTFTDPRLCAAIVDRLTYNATIIETGTHSYRLAHTRARQTL
>NZ_CP010341.1|WP_027586302.1|2567358_2568066_-|hypothetical-protein
MTTNESSSLARGSLAFLGIASVAAVGLALAVPDLTAGSGMAGMAMTHYMELLAVRQPWNLLLFMALPVILAETLAITELVMLLGRRNDRPAAPWVARLSRAAGLLAGPVWVFIGTHLMVHAVVPLTMNGGWRGPADVIAVLSYLVGGLPMLVISLLEAGVLGRSSENRLRMHVAMVAAFLVVAHVAMIFGMVDPAVLGGDTSSSVMTHDMGGMSGMNHDMGSMNHNMSPSSQPTR
>NZ_CP010341.1|WP_044636503.1|2566631_2567327_-|response-regulator-transcription-factor
MSDVARTSVLVVDDEPVLAGTVKNYLERAGMAADTCADGNEAVSRIREEQPDVVILDLGLPGLDGVEVCRKVRTFSDCYVLMLTARADEVDMLIGLSVGADDYLTKPFSPRELVARVQVMLRRPRSTASASVARRIGELVVHPDSREASMDGVAVDLTRTEFDLLKALSAHPGRVLSRRQLTDMVWGEDWVGNDHLVDVHVAHLRKKLGEEAADPRYVLTVRGVGYRMGRG
>NZ_CP010341.1|WP_080774576.1|2565492_2566632_-|HAMP-domain-containing-histidine-kinase
MGGRPSELWPGLSWGRRLVWTQFAVLVTMSVTLVLTALEMGPPLFKKHMAEAGHTQPKVLDHAERAFHDAGAASLGLGLAAAMMIAAVTSWVLNRSLIRGLDALAEGAERVAHGNYDDPVRMPPLGRELESVAHEFNRMAAQIAATEATRRRMWTDLGHELRTPLSVTRVTLESLEDGVAVYGPEVLEVLQRQNERITALAADISEVSRAEEGRIPLELRLTRIDDLVKSAVTSCAKACAEAGIQLVTRGNCPVEVDVDPARIGQVLDNLLRNAVQHTPRGGEVCVTSWSDTDSVSIQVSDTGAGIPAGEVPHVFERFFHQGSRRVRDVDGGTGVGLTIARAVARAHGGDVLAASPGVGCGASFSLVLPRSLDRISTLP
>NZ_CP010341.1|WP_027586299.1|2563978_2565457_-|multicopper-oxidase-family-protein
MNTITRRQALLAGLGLASTSALAACGAKQPSPASTTPATWAIPTQTPLATPAGATTVTHTLTPRPVTLDLGGVLAKTWAYTDELDGNVLRGKAGDLFRVTVDNQLPTATSVHWHGIALRNASDGVPGVTQDPIAAKSAFTYEFVAPHAGTYFFHPHSGVQIDRGLYAPLVLDDPRDPGDHDAEWVLVLDDWTDGVGKSPDAIFADFKANSGPLSQGMNHDMGGMDHGSSPLGDAGDVSYPHYVVNGRIPAAPRTLTARPGDKIRLRLINAGADTIFKVGLSGHRLTITHADGFAVQPVEATAIYLAMGERIDATVTVGDGVFVLQAAPEGKTGTPARAIVKTGAGSIPPATTRIPELGGKAVLGTALRAADAAKLPDKEPEQTLEVQLNGQMKPYAWGINGKKFGEDTPLSISLGQRVRMRMTNMTMMAHPMHIHGHTWSLPGSNGLRKDTVLLLPMQTIEADLQADNPGAWMLHCHNIYHAEIGMMTSLRY
>NZ_CP010341.1|WP_044636672.1|2579068_2580070_+|IS481-family-transposase
MTHANAPLTPEGRRRLAVLVVEQGWSLRRAAERFQCSPATVKRWADRYRAGLPLIDRSSRPTSSPNRLSRKTEHRIVALRFTRRWGPHRIAYHLRLHRSTVGRVLARYKMPKLINIDQATGLPVRRPKPKRYEVAAPGQLVHVDIKKQGRIPDGGGWRAHGRGSMQDRHAGVARDKAARAGAAGSRGYRYLHHAVDDHSRIAYSEILDDERKETAAGFWTRANAFFAGLGVTVTAVMTDNGSCYRSGAFADALGDEVKHKWTRPYRPQTNGKVERFNRTLAVEWAYAKPYASEAERAAAYETWLHHYNHHRPHTGIGGQTPSARVHNVTGKYS
>NZ_CP010341.1|WP_044636506.1|2580073_2581099_-|hypothetical-protein
MKFRRRNLEALGSLIVGNVGRDDAENEDEAKYFPYRSSMYITEFFQELETEFHHDGSTRHRWVADVLEQMLAEPHDGPTRPPDVFCRLIDQLMSPADRLNEGPDRPRALAQLNEVLGREGFEAFYGEDNHCYLRHVGTQTVTVLAANPHRPFSKAELERRQLLTAYLDQCSEDDLIEEVLLPLFRQLGYHRITAAGHKDKALEYGKDIWMRYTLPTQHILYFGIQAKKGKLDASGVTKTGNANMAEIHNQALMMLAHEIFDPETNRRVLVDHAFIVAGGEITKAARNWLGNALDASKRSQIMFMDRDDILNLYVVTNLPLPGGALPPSPPNPWATRDEAPF
>NZ_CP010341.1|WP_044636507.1|2581221_2581983_+|hypothetical-protein
MTVDVRRAVLDRLGTGGASRFGRPYLVATLHREVGCSETEVWEAFWGLVGEGLVYLDTAGQGSGTDNWQWHLSTDGRRVAEGGSWEPRDPDGYMDRVRRDIPDLDELVELYLTEALQSFNGRCYLATSVMLGVAAERAFLVMAASYAASTVSGAPAMAKELARPRSNYFALWTEFRKRIEPIRQDLPDGLADSLTLDAIADLIRLTRNEVGHPTGRQIDEDTARVHLTIAPTYMRKMRALTVHFAQRPAEVNE
>NZ_CP010341.1|WP_052809220.1|2581979_2583440_+|hypothetical-protein
MTQLPMPVHVGSEPPEHWDDIEARQQQYGDDAAPYLRDKQRPSIARPDIDWGALGFEPRWVGFDAADCAAALQPSIFSGQGADEFNRFRQGAERRGETALVISPIGETEGASRNVHNVFDPPVSSVSIGQTYTSIDGRTIGKGARVRAASDLDDADGQLALRLLSATQAPTWRSLSLSGAVLESVYGREDHPPEGTLLPILETELGEPVVAVWISPDGVERRYVVPVETSWTLLLPWLLEQALPAFVPGAMRRARRPLTSDRDLMTRRERDAHAALADLELDYAARRIELERQIEDAQDAAVATREGLLYGTGQQLVSAVRAVFETAGIEVVDLDEKLGDTKNADLLCTYGGLSRLVEVKSANGSAPERAYQDLIRHLREWPSLPGASPIDGGALVISHDLRKVPLDRRPTPYARPEFLLAQTEPVISALELFAAWRDEDVEAIRQLLFGSSAAPVGNSAGQAGAAVVDVDAASSSRILRHWFGRR
>NZ_CP010341.1|WP_044636508.1|2583718_2586292_+|hypothetical-protein
MAFLGKTKRAVQQFPSPEELYLSGTLPRTTDAVDSLWLHQGDVIRAYAENHVDTPDLALELPTGTGKTLPGLLVGEWVRRKAEGPVIYATPTKQLARQVAATAEREGIAAALLIGSAKYWDPADEASVEGGEAIGITTYSAVFNSSPKLPEPRLLIFDDAHAGEQFVGNEYGISIRRHDDEDAYLEVLEGLKPFLSGLLIQRLEGDPDPGAHHQVRLILPAVDQTALTKLDAVLAGLPKPHSYKLAMIRPGLAACCVYLSYGGIQIRPMIPPTYENRVFARAKQRIYLSATLGSGGELERAFGRREIVRMPLPTKTPPRSGRRLFVFPDLVKDGDAVELTKQIVGLTDKALVLSQETIANTEATAKALAGNDVPVMGRDDLERNGLESFAKASSGVLGLANRYDGLDLPGKACRIVVLDGRPDAVGLQERFLSERAEANAALAERLRTRIVQGAGRCTRGPNDYAVVVVLGSDIMKYFSRPENLKALEPELQAEVEFGWQNSRGTDPDEIIENVGVFLEHGADWRKQGEPMVAEFRQDAVKVEAPGTDALGKAAALEVEAWQLAFGGDWIGASEKMQEAVPHVGPEATRGYRGLLLYIAGVWLHLGAQDETQRSRARQLVREAALAANRGTWLKEMRELPGAEEVPLVLEDIVAVNQVVARLRGQIKPKRINTALTEMQESLDQDEAIRYERGLTTLGSFLGAEASKPKGQGRCDSAWVWGTAMWMTIEAKSEEHNGGLLPLKDVRQANTQLDQLAADRGMDHPPAGSPAIIVSDKLSVDPQHAQAANPNVYLTSTRVVGEIASDVAVVWADLLTTAIGIASEHAQKQHVRSVMTENGCLPSQVIDRLAQNRIRPGH
>NZ_CP010341.1|WP_080774578.1|2586900_2587200_-|hypothetical-protein
MEGALRLAGTDESLGAFYGLCLVGGVALHLIGHLIFDLRVQRARNVARACALVILVGLAPAIIRLPALGGLAAVTMVLVVLVVFERLYFAELRRQSRDA
>NZ_CP010341.1|WP_044636511.1|2587097_2588102_-|low-temperature-requirement-protein-A
MDGALPARARGLRHARPHAGEGATTFELFFDLVYVFAVTQVTDLISHEHGAEGVPHGLILFGMLWWTWCTFVWLGNQLRADVGLGAVGFGLALVGVFVIALAIPSAWDSAGEGLPGPVVLVSAYLFVRLVHLVVYTIAARDDAGLRRQIAISRLPLLVQAVLLVIGVVVGGQAQTALFAIAMLGEWLSVYLTSRHGSWRIYSASHWTERFELFVLIVLGESLVAVGVGAGEHPLTIPLLLAAGLGVVLAICLWWLYFDLVAAATGRRVAELAGTERIRIAFEAYVYGHFPLVAGSSSRRSAWRVPCAWPARTSPSVRSTACASWVAWRSTSSGT
>NZ_CP010341.1|WP_044636512.1|2588468_2588705_+|hypothetical-protein
MNDIVANLTAQPILGVGTVLFVIGLGFAVLFGLSFRIRAVLNKRAWNGPTRPFFFLMLLTLIPGIALIGLQLWLNQGH
>NZ_CP010341.1|WP_044636931.1|2588805_2590020_-|cytochrome-P450
MTSDTPSRDNPAPHEPQSYEWDPRAPEVLDNQIAAYDALRARCPVAHSEQMGWSLLRHDDVLRAATQTRTFSAVVSKHVAVPNGMDPPEHTVYRTIVDRYFTQEVVDAFEPACRAIAADLIAALPRDKPADIVNDLAEPFALQVQSAYLGWPERLREPLREWTLSNRRATASGDRAATAAVAEQFDGYITGLLDKRRAMGDAAPDDLTTRLMKEQVDGRVLNDGELVSILRNWTVGELSTISAAAGIVVDHLAEHPDVQSLMRAKAGSPATLDDAVDEILRIHPPLISNRRVVAEPTEIGGRQFEPGERLTILWASANRDEDVFGDPNEFRLDRPREDNLLYGAGIHVCPGAPLARLELRMLTQELLAATGTITPDRAATSQYASYPASGFAELSVILGSVTEG
>NZ_CP010341.1|WP_044636513.1|2590352_2591207_-|aldo/keto-reductase
MILNETFDLSNGEKIPKLGLGTWFIDDDRAAQAVRDAVQIGYRNIDTAQAYGNEQGVGEGVRTADVARDQLFVSTKLAAEIKDFDQAVAAIDGSLAKLGLDYVDLMMIHSPQPWNDFRGGNYDEGNREAWRALEKAHHEGKVRSIGISNFLKEDVDNILGSAQVAPQVNQLLVHIGNTPQELIDYCTSKDILVEAYSPMAHGEMMGNERVRDIAEDNHVTVPQLSIRYALQLGTVPLPKTANPDHMRANAQVDFVISDDDMATLRGLDQTDYGKYTKFPVYSGK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP010341_3	3.1\|742825\|50\|NZ_CP010341\|CRISPRCasFinder	742825-742874	50	NZ_CP010341.1	742788-742837	2	0.96

1. spacer 3.1|742825|50|NZ_CP010341|CRISPRCasFinder matches to position: 742788-742837, mismatch: 2, identity: 0.96

tgtggtggatccagtgggtcagcttgttgggctgacctgtggtggatcca	CRISPR spacer
tgtggtggatcccgtgggtcagcctgttgggctgacctgtggtggatcca	Protospacer
************ **********.**************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010341_1	1.30\|415477\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415477-415512	36	NC_041891	Propionibacterium phage B22, complete genome	34063-34098	0	1.0
NZ_CP010341_1	1.30\|415477\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415477-415512	36	NC_041894	Propionibacterium phage E6, complete genome	33563-33598	0	1.0
NZ_CP010341_1	1.30\|415477\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415477-415512	36	NC_041890	Propionibacterium phage Anatole, complete genome	30635-30670	0	1.0
NZ_CP010341_1	1.30\|415477\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415477-415512	36	KX620752	Propionibacterium phage E1, complete genome	30635-30670	0	1.0
NZ_CP010341_1	1.30\|415477\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415477-415512	36	NC_041892	Propionibacterium phage B3, complete genome	31298-31333	0	1.0
NZ_CP010341_1	1.31\|415549\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415549-415584	36	NC_041891	Propionibacterium phage B22, complete genome	34063-34098	0	1.0
NZ_CP010341_1	1.31\|415549\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415549-415584	36	NC_041894	Propionibacterium phage E6, complete genome	33563-33598	0	1.0
NZ_CP010341_1	1.31\|415549\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415549-415584	36	NC_041890	Propionibacterium phage Anatole, complete genome	30635-30670	0	1.0
NZ_CP010341_1	1.31\|415549\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415549-415584	36	KX620752	Propionibacterium phage E1, complete genome	30635-30670	0	1.0
NZ_CP010341_1	1.31\|415549\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415549-415584	36	NC_041892	Propionibacterium phage B3, complete genome	31298-31333	0	1.0
NZ_CP010341_2	2.9\|418432\|38\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418432-418469	38	NC_041891	Propionibacterium phage B22, complete genome	12695-12732	0	1.0
NZ_CP010341_2	2.9\|418432\|38\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418432-418469	38	NC_041894	Propionibacterium phage E6, complete genome	12916-12953	0	1.0
NZ_CP010341_2	2.16\|418942\|37\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418942-418978	37	KU984979	Propionibacterium phage PFR1, complete genome	29093-29129	0	1.0
NZ_CP010341_2	2.16\|418942\|37\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418942-418978	37	NC_031108	Propionibacterium phage PFR2, complete genome	30662-30698	0	1.0
NZ_CP010341_1	1.26\|415189\|38\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415189-415226	38	NC_041890	Propionibacterium phage Anatole, complete genome	5291-5328	1	0.974
NZ_CP010341_1	1.26\|415189\|38\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415189-415226	38	KX620752	Propionibacterium phage E1, complete genome	5291-5328	1	0.974
NZ_CP010341_1	1.26\|415189\|38\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415189-415226	38	NC_041892	Propionibacterium phage B3, complete genome	5291-5328	1	0.974
NZ_CP010341_2	2.3\|418001\|34\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418001-418034	34	KX620751	Propionibacterium phage Doucette, complete genome	23927-23960	1	0.971
NZ_CP010341_2	2.3\|418001\|34\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418001-418034	34	NC_041891	Propionibacterium phage B22, complete genome	22513-22546	1	0.971
NZ_CP010341_2	2.6\|418212\|39\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418212-418250	39	KX620751	Propionibacterium phage Doucette, complete genome	21318-21356	1	0.974
NZ_CP010341_2	2.6\|418212\|39\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418212-418250	39	NC_041891	Propionibacterium phage B22, complete genome	19943-19981	1	0.974
NZ_CP010341_2	2.7\|418287\|38\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418287-418324	38	KX620754	Propionibacterium phage G4, complete genome	35678-35715	1	0.974
NZ_CP010341_2	2.16\|418942\|37\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418942-418978	37	KX620754	Propionibacterium phage G4, complete genome	31266-31302	1	0.973
NZ_CP010341_1	1.29\|415409\|32\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415409-415440	32	NC_041892	Propionibacterium phage B3, complete genome	2206-2237	2	0.938
NZ_CP010341_2	2.2\|417929\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	417929-417964	36	KU984979	Propionibacterium phage PFR1, complete genome	12638-12673	2	0.944
NZ_CP010341_2	2.2\|417929\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	417929-417964	36	NC_031108	Propionibacterium phage PFR2, complete genome	14207-14242	2	0.944
NZ_CP010341_2	2.9\|418432\|38\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418432-418469	38	KX620751	Propionibacterium phage Doucette, complete genome	12868-12905	2	0.947
NZ_CP010341_2	2.14\|418798\|35\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418798-418832	35	KU984979	Propionibacterium phage PFR1, complete genome	23944-23978	2	0.943
NZ_CP010341_2	2.14\|418798\|35\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418798-418832	35	NC_031108	Propionibacterium phage PFR2, complete genome	25513-25547	2	0.943
NZ_CP010341_1	1.29\|415409\|32\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415409-415440	32	NC_041890	Propionibacterium phage Anatole, complete genome	2206-2237	3	0.906
NZ_CP010341_1	1.29\|415409\|32\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415409-415440	32	KX620752	Propionibacterium phage E1, complete genome	2206-2237	3	0.906
NZ_CP010341_6	6.1\|2578845\|28\|NZ_CP010341\|CRISPRCasFinder	2578845-2578872	28	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	69884-69911	4	0.857
NZ_CP010341_6	6.1\|2578845\|28\|NZ_CP010341\|CRISPRCasFinder	2578845-2578872	28	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1097435-1097462	4	0.857
NZ_CP010341_6	6.1\|2578845\|28\|NZ_CP010341\|CRISPRCasFinder	2578845-2578872	28	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	545233-545260	4	0.857
NZ_CP010341_6	6.1\|2578845\|28\|NZ_CP010341\|CRISPRCasFinder	2578845-2578872	28	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	1007900-1007927	4	0.857
NZ_CP010341_1	1.36\|415916\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415916-415951	36	NC_041891	Propionibacterium phage B22, complete genome	25740-25775	5	0.861
NZ_CP010341_6	6.1\|2578845\|28\|NZ_CP010341\|CRISPRCasFinder	2578845-2578872	28	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	758895-758922	5	0.821
NZ_CP010341_6	6.1\|2578845\|28\|NZ_CP010341\|CRISPRCasFinder	2578845-2578872	28	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	1478164-1478191	6	0.786
NZ_CP010341_6	6.1\|2578845\|28\|NZ_CP010341\|CRISPRCasFinder	2578845-2578872	28	NZ_CP038257	Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence	26145-26172	6	0.786
NZ_CP010341_1	1.29\|415409\|32\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415409-415440	32	MG869620	Polaromonas sp. H6N plasmid pH6NP1, complete sequence	38798-38829	8	0.75
NZ_CP010341_1	1.29\|415409\|32\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415409-415440	32	NZ_CP045376	Sulfitobacter sp. THAF37 plasmid pTHAF37_d, complete sequence	61610-61641	8	0.75
NZ_CP010341_1	1.29\|415409\|32\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415409-415440	32	NZ_CP018077	Sulfitobacter sp. AM1-D1 plasmid unnamed1, complete sequence	61391-61422	8	0.75
NZ_CP010341_2	2.4\|418071\|34\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418071-418104	34	KX534340	Phage Wrath, partial genome	2429-2462	8	0.765
NZ_CP010341_1	1.29\|415409\|32\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415409-415440	32	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	22536-22567	9	0.719
NZ_CP010341_1	1.29\|415409\|32\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415409-415440	32	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	490258-490289	9	0.719
NZ_CP010341_1	1.36\|415916\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415916-415951	36	KX620754	Propionibacterium phage G4, complete genome	32326-32361	9	0.75
NZ_CP010341_1	1.38\|416059\|34\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	416059-416092	34	NZ_CP015741	Shinella sp. HZN7 plasmid pShin-05, complete sequence	130102-130135	9	0.735
NZ_CP010341_2	2.6\|418212\|39\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418212-418250	39	NC_041891	Propionibacterium phage B22, complete genome	20538-20576	9	0.769
NZ_CP010341_1	1.29\|415409\|32\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415409-415440	32	NC_007764	Rhizobium etli CFN 42 plasmid p42c, complete sequence	249937-249968	10	0.688
NZ_CP010341_1	1.29\|415409\|32\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415409-415440	32	NZ_CP020908	Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence	249151-249182	10	0.688
NZ_CP010341_1	1.29\|415409\|32\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415409-415440	32	NC_021907	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1b, complete sequence	251678-251709	10	0.688
NZ_CP010341_2	2.8\|418361\|35\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	418361-418395	35	NZ_CP045374	Sulfitobacter sp. THAF37 plasmid pTHAF37_b, complete sequence	26542-26576	10	0.714
NZ_CP010341_1	1.36\|415916\|36\|NZ_CP010341\|PILER-CR,CRISPRCasFinder,CRT	415916-415951	36	NZ_KF418775	Burkholderia pseudomallei strain MSHR1950 plasmid pBPSE01, complete sequence	100041-100076	11	0.694

1. spacer 1.30|415477|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 0, identity: 1.0

tgcttgctcagagcttgtctcttttggtcgttttgc	CRISPR spacer
tgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
************************************

2. spacer 1.30|415477|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 0, identity: 1.0

tgcttgctcagagcttgtctcttttggtcgttttgc	CRISPR spacer
tgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
************************************

3. spacer 1.30|415477|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041890 (Propionibacterium phage Anatole, complete genome) position: , mismatch: 0, identity: 1.0

tgcttgctcagagcttgtctcttttggtcgttttgc	CRISPR spacer
tgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
************************************

4. spacer 1.30|415477|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KX620752 (Propionibacterium phage E1, complete genome) position: , mismatch: 0, identity: 1.0

tgcttgctcagagcttgtctcttttggtcgttttgc	CRISPR spacer
tgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
************************************

5. spacer 1.30|415477|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041892 (Propionibacterium phage B3, complete genome) position: , mismatch: 0, identity: 1.0

tgcttgctcagagcttgtctcttttggtcgttttgc	CRISPR spacer
tgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
************************************

6. spacer 1.31|415549|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 0, identity: 1.0

tgcttgctcagagcttgtctcttttggtcgttttgc	CRISPR spacer
tgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
************************************

7. spacer 1.31|415549|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 0, identity: 1.0

tgcttgctcagagcttgtctcttttggtcgttttgc	CRISPR spacer
tgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
************************************

8. spacer 1.31|415549|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041890 (Propionibacterium phage Anatole, complete genome) position: , mismatch: 0, identity: 1.0

tgcttgctcagagcttgtctcttttggtcgttttgc	CRISPR spacer
tgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
************************************

9. spacer 1.31|415549|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KX620752 (Propionibacterium phage E1, complete genome) position: , mismatch: 0, identity: 1.0

tgcttgctcagagcttgtctcttttggtcgttttgc	CRISPR spacer
tgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
************************************

10. spacer 1.31|415549|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041892 (Propionibacterium phage B3, complete genome) position: , mismatch: 0, identity: 1.0

tgcttgctcagagcttgtctcttttggtcgttttgc	CRISPR spacer
tgcttgctcagagcttgtctcttttggtcgttttgc	Protospacer
************************************

11. spacer 2.9|418432|38|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 0, identity: 1.0

ttgacctcgtcggcaccgaacttcgtcgccacccagtt	CRISPR spacer
ttgacctcgtcggcaccgaacttcgtcgccacccagtt	Protospacer
**************************************

12. spacer 2.9|418432|38|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 0, identity: 1.0

ttgacctcgtcggcaccgaacttcgtcgccacccagtt	CRISPR spacer
ttgacctcgtcggcaccgaacttcgtcgccacccagtt	Protospacer
**************************************

13. spacer 2.16|418942|37|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 0, identity: 1.0

tgtgggccagcgtggtggtcagcgacttgaccgacgc	CRISPR spacer
tgtgggccagcgtggtggtcagcgacttgaccgacgc	Protospacer
*************************************

14. spacer 2.16|418942|37|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 0, identity: 1.0

tgtgggccagcgtggtggtcagcgacttgaccgacgc	CRISPR spacer
tgtgggccagcgtggtggtcagcgacttgaccgacgc	Protospacer
*************************************

15. spacer 1.26|415189|38|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041890 (Propionibacterium phage Anatole, complete genome) position: , mismatch: 1, identity: 0.974

ttcaacgaccggcccgacgccttgagctccttgacgaa	CRISPR spacer
ttcaacgaccggcccgacgccttgagctccttgatgaa	Protospacer
**********************************.***

16. spacer 1.26|415189|38|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KX620752 (Propionibacterium phage E1, complete genome) position: , mismatch: 1, identity: 0.974

ttcaacgaccggcccgacgccttgagctccttgacgaa	CRISPR spacer
ttcaacgaccggcccgacgccttgagctccttgatgaa	Protospacer
**********************************.***

17. spacer 1.26|415189|38|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041892 (Propionibacterium phage B3, complete genome) position: , mismatch: 1, identity: 0.974

ttcaacgaccggcccgacgccttgagctccttgacgaa	CRISPR spacer
ttcaacgaccggcccgacgccttgagctccttgatgaa	Protospacer
**********************************.***

18. spacer 2.3|418001|34|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KX620751 (Propionibacterium phage Doucette, complete genome) position: , mismatch: 1, identity: 0.971

tctggctgtggcacctatgcgaaggatgccttgg	CRISPR spacer
tctggctgtggcacctatgcgagggatgccttgg	Protospacer
**********************.***********

19. spacer 2.3|418001|34|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 1, identity: 0.971

tctggctgtggcacctatgcgaaggatgccttgg	CRISPR spacer
tctggctgtggcacctatgcgagggatgccttgg	Protospacer
**********************.***********

20. spacer 2.6|418212|39|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KX620751 (Propionibacterium phage Doucette, complete genome) position: , mismatch: 1, identity: 0.974

tggtggagcttcccccttgacatcgcgaatactatggcc	CRISPR spacer
tggtggagcttcccccttgacatcccgaatactatggcc	Protospacer
************************ **************

21. spacer 2.6|418212|39|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 1, identity: 0.974

tggtggagcttcccccttgacatcgcgaatactatggcc	CRISPR spacer
tggtggagcttcccccttgacatcccgaatactatggcc	Protospacer
************************ **************

22. spacer 2.7|418287|38|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KX620754 (Propionibacterium phage G4, complete genome) position: , mismatch: 1, identity: 0.974

tcgcaagctatccaggcgaacgccaccatgacgtcccg	CRISPR spacer
tcgcaagctatccaggcgaacgccaccatgacgtcacg	Protospacer
*********************************** **

23. spacer 2.16|418942|37|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KX620754 (Propionibacterium phage G4, complete genome) position: , mismatch: 1, identity: 0.973

tgtgggccagcgtggtggtcagcgacttgaccgacgc	CRISPR spacer
tgtggtccagcgtggtggtcagcgacttgaccgacgc	Protospacer
***** *******************************

24. spacer 1.29|415409|32|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041892 (Propionibacterium phage B3, complete genome) position: , mismatch: 2, identity: 0.938

ctggaggcgctgcgaggtgccgccagacaaga	CRISPR spacer
ctggaggcgctgtgaggtgccaccagacaaga	Protospacer
************.********.**********

25. spacer 2.2|417929|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 2, identity: 0.944

accgaacatgccctcagcgccataacgcgacttcgc	CRISPR spacer
accgaacatgccctcgccgccataacgcgacttcgc	Protospacer
***************. *******************

26. spacer 2.2|417929|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 2, identity: 0.944

accgaacatgccctcagcgccataacgcgacttcgc	CRISPR spacer
accgaacatgccctcgccgccataacgcgacttcgc	Protospacer
***************. *******************

27. spacer 2.9|418432|38|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KX620751 (Propionibacterium phage Doucette, complete genome) position: , mismatch: 2, identity: 0.947

ttgacctcgtcggcaccgaacttcgtcgccacccagtt	CRISPR spacer
ttgacctcgtcggcaccgaacttggtcgcaacccagtt	Protospacer
*********************** ***** ********

28. spacer 2.14|418798|35|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 2, identity: 0.943

cccatcacctccgacacgtaggccgtccatgactt	CRISPR spacer
cccatcacctccgccacgaaggccgtccatgactt	Protospacer
************* **** ****************

29. spacer 2.14|418798|35|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 2, identity: 0.943

cccatcacctccgacacgtaggccgtccatgactt	CRISPR spacer
cccatcacctccgccacgaaggccgtccatgactt	Protospacer
************* **** ****************

30. spacer 1.29|415409|32|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041890 (Propionibacterium phage Anatole, complete genome) position: , mismatch: 3, identity: 0.906

ctggaggcgctgcgaggtgccgccagacaaga	CRISPR spacer
ctggaggcgctgtgaggtgccaccagacaagg	Protospacer
************.********.*********.

31. spacer 1.29|415409|32|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KX620752 (Propionibacterium phage E1, complete genome) position: , mismatch: 3, identity: 0.906

ctggaggcgctgcgaggtgccgccagacaaga	CRISPR spacer
ctggaggcgctgtgaggtgccaccagacaagg	Protospacer
************.********.*********.

32. spacer 6.1|2578845|28|NZ_CP010341|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.857

cggccatgcacggggcggcctcgcgctc	CRISPR spacer
aggccatgaacggcgcggcctcgcgcgc	Protospacer
 ******* **** ************ *

33. spacer 6.1|2578845|28|NZ_CP010341|CRISPRCasFinder matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 4, identity: 0.857

--cggccatgcacggggcggcctcgcgctc	CRISPR spacer
gacggc--tgcacgtggcggcctcgcgctt	Protospacer
  ****  ****** **************.

34. spacer 6.1|2578845|28|NZ_CP010341|CRISPRCasFinder matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 4, identity: 0.857

--cggccatgcacggggcggcctcgcgctc	CRISPR spacer
gacggc--tgcacgtggcggcctcgcgctt	Protospacer
  ****  ****** **************.

35. spacer 6.1|2578845|28|NZ_CP010341|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 4, identity: 0.857

cggccatgcacggggcggcctcg-cgctc	CRISPR spacer
cggccatgcgccgggcggcctcgatgct-	Protospacer
*********.* *********** .***

36. spacer 1.36|415916|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 5, identity: 0.861

aataggtgcggttcatgccgcgaccgcgacgctcgg---	CRISPR spacer
aataggtgcggttcatgccgccacctcga---tcggacc	Protospacer
********************* *** ***   ****

37. spacer 6.1|2578845|28|NZ_CP010341|CRISPRCasFinder matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 5, identity: 0.821

cggccatgcacggggcggcctcgcgctc	CRISPR spacer
cagagatgaacggggcggcctcacgctc	Protospacer
*.*  *** *************.*****

38. spacer 6.1|2578845|28|NZ_CP010341|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

cggccatgcacggggcggcctcgcgctc	CRISPR spacer
tcgccatgcacggggcggctttgcgcat	Protospacer
. *****************.*.**** .

39. spacer 6.1|2578845|28|NZ_CP010341|CRISPRCasFinder matches to NZ_CP038257 (Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.786

cggccatgcacggggcggcctcgcgctc	CRISPR spacer
cgtccatgcacggggcgccctcgtcgac	Protospacer
** ************** *****.   *

40. spacer 1.29|415409|32|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to MG869620 (Polaromonas sp. H6N plasmid pH6NP1, complete sequence) position: , mismatch: 8, identity: 0.75

ctggaggcgctgcgaggtgccgccagacaaga	CRISPR spacer
ctggaggcgctgcgcggtggcgcgaaagccgg	Protospacer
************** **** *** *.*   *.

41. spacer 1.29|415409|32|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045376 (Sulfitobacter sp. THAF37 plasmid pTHAF37_d, complete sequence) position: , mismatch: 8, identity: 0.75

ctggaggcgctgcgaggtgc--cgccagacaaga	CRISPR spacer
ctggaggcgctggaaggtgccgcgctggaccg--	Protospacer
************ .******  ***..*** .

42. spacer 1.29|415409|32|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018077 (Sulfitobacter sp. AM1-D1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ctggaggcgctgcgaggtgc--cgccagacaaga	CRISPR spacer
ctggaggcgctggaaggtgccgcgcttgaccg--	Protospacer
************ .******  ***. *** .

43. spacer 2.4|418071|34|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KX534340 (Phage Wrath, partial genome) position: , mismatch: 8, identity: 0.765

attttgctcaccccctttcatcaaaaaactgaat	CRISPR spacer
caatttctcaccgcctttcatcaaaaaataaaat	Protospacer
   ** ****** ***************. .***

44. spacer 1.29|415409|32|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 9, identity: 0.719

ctggaggcgctgcgaggtgccgccagacaaga	CRISPR spacer
ggtggtgcgctgcgaggtgccggccgacacgc	Protospacer
   *. **************** * **** *

45. spacer 1.29|415409|32|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 9, identity: 0.719

ctggaggcgctgcgaggtgccgccagacaaga	CRISPR spacer
ggtggtgcgctgcgaggtgccggccgacacgc	Protospacer
   *. **************** * **** *

46. spacer 1.36|415916|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to KX620754 (Propionibacterium phage G4, complete genome) position: , mismatch: 9, identity: 0.75

aataggtgcggttcatgccgcgaccgcgacgctcgg	CRISPR spacer
aataggtgcgggtcatgccgccaccgccttcgcagg	Protospacer
*********** ********* *****  .  . **

47. spacer 1.38|416059|34|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015741 (Shinella sp. HZN7 plasmid pShin-05, complete sequence) position: , mismatch: 9, identity: 0.735

gggtttacgcgagggtgagcatcaatgcctaccc	CRISPR spacer
gtgcaggaccgagggtgagcatgaatgcccaccc	Protospacer
* *.  .  ************* ******.****

48. spacer 2.6|418212|39|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 9, identity: 0.769

tggtggagcttcccccttgacatcgcgaatactatggcc	CRISPR spacer
ccccagcctctcccccttgacatcgcgaatactatggcc	Protospacer
.  ..*  ..*****************************

49. spacer 1.29|415409|32|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_007764 (Rhizobium etli CFN 42 plasmid p42c, complete sequence) position: , mismatch: 10, identity: 0.688

ctggaggcgctgcgaggtgccgccagacaaga	CRISPR spacer
cgacgagcgctgcgaggtgccggcggacagtc	Protospacer
* . ..**************** *.****.

50. spacer 1.29|415409|32|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020908 (Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence) position: , mismatch: 10, identity: 0.688

ctggaggcgctgcgaggtgccgccagacaaga	CRISPR spacer
cgacgagcgctgcgaggtgccggcggacagtc	Protospacer
* . ..**************** *.****.

51. spacer 1.29|415409|32|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NC_021907 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1b, complete sequence) position: , mismatch: 10, identity: 0.688

ctggaggcgctgcgaggtgccgccagacaaga	CRISPR spacer
cgacgagcgctgcgaggtgccggcggacagtc	Protospacer
* . ..**************** *.****.

52. spacer 2.8|418361|35|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045374 (Sulfitobacter sp. THAF37 plasmid pTHAF37_b, complete sequence) position: , mismatch: 10, identity: 0.714

atgaggaccttctcgaagctcgggttgatcagcaa	CRISPR spacer
gcgctctttttctcgtagctcgggttgatcagcat	Protospacer
..*    ..****** ******************

53. spacer 1.36|415916|36|NZ_CP010341|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KF418775 (Burkholderia pseudomallei strain MSHR1950 plasmid pBPSE01, complete sequence) position: , mismatch: 11, identity: 0.694

aataggtgcggttcatgccgcgaccgcgacgctcgg	CRISPR spacer
ggaggttgcggttcatgccgcggccgcggcgcagcc	Protospacer
.. .* ****************.*****.***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

97374 : 145071

Mycobacterium_phage(44.44%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013159941.1\|97374_98682_-\|transposase	ISL3-like element ISPfr1 family transposase	A0A2H4PDF8	Mycobacterium_phage	4.8e-170	68.3
WP_044635851.1\|98906_99272_+	hypothetical protein	NA	NA	NA	NA
WP_044635852.1\|99412_100723_-\|transposase	ISL3-like element ISPfr18 family transposase	A0A2H4PDF8	Mycobacterium_phage	4.5e-176	69.8
WP_013160219.1\|100967_101384_-	hypothetical protein	NA	NA	NA	NA
WP_158487017.1\|101437_102598_-	DUF1906 domain-containing protein	NA	NA	NA	NA
WP_097784151.1\|102511_103891_+\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_158487019.1\|103833_105177_-	DUF1906 domain-containing protein	NA	NA	NA	NA
WP_048734242.1\|107137_107647_+	hypothetical protein	NA	NA	NA	NA
WP_026138135.1\|108092_109418_+\|transposase	ISL3-like element ISPfr2 family transposase	A0A2H4PDF8	Mycobacterium_phage	3.6e-197	77.0
WP_138427876.1\|109645_110659_+	hypothetical protein	NA	NA	NA	NA
WP_097776020.1\|110667_111348_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.4e-25	34.5
WP_036940993.1\|111344_112493_+	ABC transporter permease	NA	NA	NA	NA
WP_052809046.1\|112650_115905_-	DEAD/DEAH box helicase	E4WLZ5	Ostreococcus_tauri_virus	2.4e-40	29.4
WP_044635816.1\|116714_117749_+\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_052809047.1\|117729_119466_+	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_036940996.1\|119568_120288_+	hypothetical protein	NA	NA	NA	NA
WP_036940999.1\|120519_121323_+	deoxyribonuclease IV	NA	NA	NA	NA
WP_044635855.1\|121319_123326_+	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	6.5e-49	26.0
WP_080774416.1\|123365_124748_-	sugar porter family MFS transporter	NA	NA	NA	NA
WP_044635856.1\|125138_125936_-	TIM barrel protein	NA	NA	NA	NA
WP_158487021.1\|126427_127450_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013162128.1\|127715_128288_+	isochorismatase family protein	A0A2K9L2K0	Tupanvirus	6.0e-16	34.9
WP_060759093.1\|128668_129529_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_044635860.1\|129822_130734_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_044635861.1\|130900_131812_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013162124.1\|131893_132874_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_036941071.1\|132929_133703_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-33	40.0
WP_080713542.1\|134580_135447_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_044636551.1\|135704_137831_-	NAD(+) synthase	NA	NA	NA	NA
WP_013162120.1\|137998_139192_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_172952082.1\|139291_139741_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA
WP_036941015.1\|140033_141044_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_013162117.1\|141049_142393_+	gluconate transporter	NA	NA	NA	NA
WP_013162116.1\|142506_143418_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_044635864.1\|143763_145071_-\|transposase	ISL3-like element ISPfr1 family transposase	A0A2H4PDF8	Mycobacterium_phage	6.3e-170	68.3

DBSCAN-SWA_2

746667 : 807006

Mycobacterium_phage(25.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044635816.1\|746667_747702_+\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_036939556.1\|747719_748475_+	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	1.7e-13	29.7
WP_013160596.1\|748547_749801_-	cardiolipin synthase B	NA	NA	NA	NA
WP_013160597.1\|749937_752427_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	6.9e-117	36.2
WP_044636041.1\|752550_753999_+	hypothetical protein	NA	NA	NA	NA
WP_044636042.1\|754009_754621_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.9e-18	29.3
WP_044636043.1\|754742_756296_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.4e-59	44.6
WP_044636044.1\|756369_757230_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	8.7e-27	33.7
WP_052809098.1\|757235_757559_+	DUF3017 domain-containing protein	NA	NA	NA	NA
WP_013160603.1\|757740_758727_-	malate dehydrogenase	NA	NA	NA	NA
WP_013160604.1\|758904_760122_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_013160605.1\|760313_760625_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_013160607.1\|761582_763103_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_041704503.1\|763237_764473_+	phosphotransferase	NA	NA	NA	NA
WP_080774465.1\|764602_765667_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_044636048.1\|765738_766770_+	DUF4440 domain-containing protein	A0A142CJN1	Brazilian_marseillevirus	5.5e-20	39.9
WP_036939541.1\|766846_767362_+	2'-5' RNA ligase family protein	NA	NA	NA	NA
WP_044636049.1\|767437_768370_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_036939536.1\|768563_770357_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	3.1e-74	32.3
WP_013160614.1\|770584_771508_+	Silent information regulator protein Sir2 NAD-dependent deacetylase	NA	NA	NA	NA
WP_036939887.1\|771526_772165_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_013160616.1\|772167_772623_-	DUF3290 domain-containing protein	NA	NA	NA	NA
WP_013160617.1\|772795_773161_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_013160618.1\|773273_773681_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_013160619.1\|773677_773848_+	hypothetical protein	NA	NA	NA	NA
WP_026138135.1\|774098_775424_-\|transposase	ISL3-like element ISPfr2 family transposase	A0A2H4PDF8	Mycobacterium_phage	3.6e-197	77.0
WP_144406025.1\|776331_777333_-\|transposase	IS481-like element ISPfr17 family transposase	NA	NA	NA	NA
WP_052809099.1\|777523_778144_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_026138135.1\|778650_779976_-\|transposase	ISL3-like element ISPfr2 family transposase	A0A2H4PDF8	Mycobacterium_phage	3.6e-197	77.0
WP_044636050.1\|780441_781485_-	zinc-binding dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	6.0e-22	27.5
WP_144406035.1\|781622_783455_-	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_036939521.1\|783721_787441_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_036939518.1\|787444_788452_+	dihydroorotate dehydrogenase-like protein	NA	NA	NA	NA
WP_036939511.1\|788479_788995_-	2'-5' RNA ligase family protein	NA	NA	NA	NA
WP_013160627.1\|789074_790856_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_044636052.1\|791011_791827_-	Fpg/Nei family DNA glycosylase	NA	NA	NA	NA
WP_144406036.1\|792473_792953_+	hypothetical protein	NA	NA	NA	NA
WP_013160631.1\|793043_793544_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_013160632.1\|793547_794276_-	Maf family protein	NA	NA	NA	NA
WP_013160633.1\|794326_794581_-	acyl-CoA carboxylase subunit epsilon	NA	NA	NA	NA
WP_013160634.1\|794586_796161_-	acyl-CoA carboxylase subunit beta	NA	NA	NA	NA
WP_013160635.1\|796292_797639_+	threonine/serine exporter family protein	NA	NA	NA	NA
WP_052809101.1\|797746_799219_-	hypothetical protein	NA	NA	NA	NA
WP_026138135.1\|799333_800659_+\|transposase	ISL3-like element ISPfr2 family transposase	A0A2H4PDF8	Mycobacterium_phage	3.6e-197	77.0
WP_144406037.1\|800624_800834_-	hypothetical protein	NA	NA	NA	NA
WP_013160637.1\|800830_801775_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-17	30.7
WP_013160638.1\|801879_802398_+	hypothetical protein	NA	NA	NA	NA
WP_157763589.1\|802518_803091_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_157761586.1\|803104_803695_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_013160641.1\|803859_804651_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_044636055.1\|804684_805188_+	PH domain-containing protein	NA	NA	NA	NA
WP_044636056.1\|805269_805854_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_044636658.1\|806004_807006_+\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

873395 : 928976

Tupanvirus(18.18%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138427718.1\|873395_874898_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_044636071.1\|874967_876815_+	ABC transporter	NA	NA	NA	NA
WP_044636072.1\|876811_878455_+	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_052809105.1\|878451_879114_+	hypothetical protein	NA	NA	NA	NA
WP_044636672.1\|879131_880133_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_044636073.1\|880428_880929_+	single-stranded DNA-binding protein	A0A1J0MC80	Streptomyces_phage	3.9e-11	34.8
WP_044636074.1\|881124_882813_+	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	1.0e-47	29.3
WP_013160710.1\|882984_883980_+	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_013160711.1\|883979_884609_+	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
WP_013160712.1\|884621_886142_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_013160713.1\|886128_887499_-	DUF4921 family protein	NA	NA	NA	NA
WP_044636075.1\|887555_889592_+	M3 family metallopeptidase	NA	NA	NA	NA
WP_080774473.1\|889712_892541_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_036939453.1\|892546_893005_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_044636076.1\|893170_895060_+	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	2.2e-43	24.4
WP_013160718.1\|895065_895947_+	thioesterase family protein	NA	NA	NA	NA
WP_013160719.1\|896093_896915_-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_013160720.1\|897044_898502_-	NADP-dependent phosphogluconate dehydrogenase	A0A0P0C6S9	Ostreococcus_lucimarinus_virus	2.4e-37	28.4
WP_044636077.1\|898714_901318_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.0e-46	30.8
WP_013160722.1\|901660_902275_+	DSBA oxidoreductase	NA	NA	NA	NA
WP_044636078.1\|902499_903294_+	hypothetical protein	NA	NA	NA	NA
WP_044636079.1\|903370_905665_+	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	1.8e-103	36.9
WP_044636080.1\|905661_907203_-	hypothetical protein	NA	NA	NA	NA
WP_013160728.1\|907378_907627_+	hypothetical protein	NA	NA	NA	NA
WP_044636081.1\|907738_908053_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_013160730.1\|908787_910371_+	trigger factor	NA	NA	NA	NA
WP_044636082.1\|910595_911789_+	AI-2E family transporter	NA	NA	NA	NA
WP_060762516.1\|912021_913254_+	AI-2E family transporter	NA	NA	NA	NA
WP_162467436.1\|913364_913976_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	9.8e-41	45.6
WP_162484287.1\|914053_914689_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A248SJ97	Salicola_phage	1.2e-28	38.7
WP_013160735.1\|914810_916088_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.4e-136	59.2
WP_036939438.1\|916199_916514_-	hypothetical protein	NA	NA	NA	NA
WP_044636083.1\|916632_918075_+	threonine synthase	NA	NA	NA	NA
WP_013160738.1\|918153_919275_+	6-phosphofructokinase	NA	NA	NA	NA
WP_013160739.1\|919359_920109_+	HAD family hydrolase	NA	NA	NA	NA
WP_044636084.1\|920215_922843_-\|tRNA	valine--tRNA ligase	A0A2K9KZB8	Tupanvirus	9.1e-160	36.3
WP_036939431.1\|922932_923727_-	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_013160742.1\|923990_924785_-	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_112317735.1\|924820_925411_-	DoxX family protein	NA	NA	NA	NA
WP_013160744.1\|925546_927052_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_013160745.1\|927162_927639_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	8.5e-32	52.3
WP_158487047.1\|927761_928976_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_4

2362480 : 2410234

Mycobacterium_phage(33.33%)

transposase,integrase

attL 2406593:2406652|attR 2416435:2417870

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026138135.1\|2362480_2363806_+\|transposase	ISL3-like element ISPfr2 family transposase	A0A2H4PDF8	Mycobacterium_phage	3.6e-197	77.0
WP_044636432.1\|2364508_2365198_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_013162048.1\|2365377_2365986_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013162049.1\|2366131_2366356_+	hypothetical protein	NA	NA	NA	NA
WP_041704873.1\|2366415_2367195_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013162051.1\|2367280_2367886_-	hypothetical protein	NA	NA	NA	NA
WP_013162052.1\|2368004_2368496_-	hypothetical protein	NA	NA	NA	NA
WP_013162053.1\|2368547_2370662_-	cation-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	4.1e-86	33.0
WP_044636433.1\|2370658_2371009_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013162055.1\|2371194_2371683_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013162056.1\|2371753_2372308_-	hypothetical protein	NA	NA	NA	NA
WP_013162057.1\|2372390_2372735_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_036941512.1\|2372829_2374020_+	MFS transporter	NA	NA	NA	NA
WP_013162059.1\|2374045_2374735_+	glutamine amidotransferase	NA	NA	NA	NA
WP_013162060.1\|2374818_2375799_+	ribose-phosphate pyrophosphokinase	A0A2K9L8D8	Tupanvirus	8.9e-36	33.0
WP_044636434.1\|2375949_2376561_-	DUF308 domain-containing protein	NA	NA	NA	NA
WP_044636435.1\|2376731_2377550_-	PIG-L family deacetylase	NA	NA	NA	NA
WP_044636436.1\|2377546_2378776_-	glycosyltransferase	NA	NA	NA	NA
WP_044636437.1\|2378948_2379806_+	hypothetical protein	NA	NA	NA	NA
WP_060759142.1\|2379806_2380565_-	hypothetical protein	NA	NA	NA	NA
WP_097784151.1\|2380660_2382040_+\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_044636439.1\|2382044_2382377_-	hypothetical protein	NA	NA	NA	NA
WP_155642784.1\|2382369_2383203_-	DUF4111 domain-containing protein	NA	NA	NA	NA
WP_048770022.1\|2383317_2384214_+	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA
WP_044636440.1\|2384289_2386572_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.5e-113	30.1
WP_013162069.1\|2386747_2387059_+	hypothetical protein	NA	NA	NA	NA
WP_044636442.1\|2387339_2389406_-	transketolase	NA	NA	NA	NA
WP_044636443.1\|2389525_2391310_-	ribulokinase	NA	NA	NA	NA
WP_013162072.1\|2391547_2392924_-	sn-glycerol-1-phosphate dehydrogenase	NA	NA	NA	NA
WP_013162074.1\|2392936_2394511_-	xylulose kinase	NA	NA	NA	NA
WP_013162075.1\|2394542_2395415_-	HAD-IIA family hydrolase	NA	NA	NA	NA
WP_013162076.1\|2395474_2396554_-	hypothetical protein	NA	NA	NA	NA
WP_013162077.1\|2397099_2397588_-	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_044636444.1\|2398428_2399112_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_044636445.1\|2399256_2400087_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_044636446.1\|2400248_2401001_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_044636447.1\|2401075_2402794_-	dihydroxyacetone kinase family protein	NA	NA	NA	NA
WP_013162082.1\|2403052_2403772_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_044636448.1\|2403810_2405088_-	MFS transporter	NA	NA	NA	NA
WP_044636449.1\|2405092_2405818_-	cyclase family protein	NA	NA	NA	NA
WP_052809194.1\|2405957_2406272_-	amidohydrolase family protein	NA	NA	NA	NA
2406593:2406652	attL	NA	NA	NA	NA
WP_013162114.1\|2406598_2407906_-\|transposase	ISL3-like element ISPfr6 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.8e-188	73.0
WP_052809196.1\|2407964_2408372_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_013162093.1\|2408364_2408889_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_129931493.1\|2408948_2409296_-	hypothetical protein	NA	NA	NA	NA
WP_052809198.1\|2409292_2410234_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.8e-17	24.2
2416435:2417870	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2415180 : 2455395

Mycobacterium_phage(36.36%)

transposase,integrase,holin

attL 2416918:2416977|attR 2450725:2451252

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013162114.1\|2415180_2416488_+\|transposase	ISL3-like element ISPfr6 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.8e-188	73.0
2416918:2416977	attL	NA	NA	NA	NA
WP_027587600.1\|2417529_2418111_-	recombinase family protein	A0A219YA40	Aeromonas_phage	4.2e-17	36.8
WP_013162108.1\|2418107_2418887_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_013162109.1\|2418883_2419216_-	hypothetical protein	NA	NA	NA	NA
WP_041704881.1\|2419584_2420058_+	Hsp20 family protein	NA	NA	NA	NA
WP_044636895.1\|2420298_2421300_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_051232795.1\|2421409_2421874_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_080516165.1\|2422030_2423998_-	KUP/HAK/KT family potassium transporter	A7K9V6	Acanthocystis_turfacea_chlorella_virus	6.3e-73	31.2
WP_013162114.1\|2424230_2425538_-\|transposase	ISL3-like element ISPfr6 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.8e-188	73.0
WP_027587610.1\|2427205_2427754_+	hypothetical protein	NA	NA	NA	NA
WP_036939329.1\|2428149_2429307_+\|transposase	IS30-like element ISPfr16 family transposase	W5R8L2	Staphylococcus_phage	1.2e-42	35.9
WP_027587608.1\|2429268_2429577_-\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	3.5e-23	59.1
WP_013162090.1\|2429582_2429759_-\|transposase	transposase	NA	NA	NA	NA
WP_171035545.1\|2430032_2430332_+	hypothetical protein	NA	NA	NA	NA
WP_080774559.1\|2430699_2431365_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	5.2e-11	32.7
WP_013159941.1\|2431468_2432776_+\|transposase	ISL3-like element ISPfr1 family transposase	A0A2H4PDF8	Mycobacterium_phage	4.8e-170	68.3
WP_063493589.1\|2432812_2433121_+\|transposase	transposase	NA	NA	NA	NA
WP_157761608.1\|2433143_2433371_+\|transposase	transposase	NA	NA	NA	NA
WP_080713571.1\|2433389_2434334_-	hypothetical protein	NA	NA	NA	NA
WP_013160028.1\|2437766_2437964_+	hypothetical protein	NA	NA	NA	NA
WP_036940431.1\|2438693_2441108_+	cbb3-type cytochrome c oxidase subunit I	NA	NA	NA	NA
WP_013160024.1\|2441112_2441982_+	hypothetical protein	NA	NA	NA	NA
WP_036940428.1\|2442116_2442881_+	slipin family protein	A0A2K9L035	Tupanvirus	5.0e-26	32.6
WP_044636453.1\|2442994_2443417_+	hypothetical protein	NA	NA	NA	NA
WP_144406054.1\|2444924_2446124_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	7.3e-32	35.2
WP_013160019.1\|2447830_2448394_+	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_013160018.1\|2448456_2449551_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_036943364.1\|2449597_2449852_+	hypothetical protein	NA	NA	NA	NA
WP_044636457.1\|2449775_2451131_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	6.9e-188	72.6
WP_013160015.1\|2451097_2451886_-	oxidoreductase	NA	NA	NA	NA
2450725:2451252	attR	NA	NA	NA	NA
WP_044636672.1\|2452051_2453053_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_013160014.1\|2453268_2453868_-	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
WP_044636458.1\|2453871_2454876_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_036940614.1\|2455014_2455395_+\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010341

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection