CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP009711	Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_1, complete sequence	0 crisprs	NA	0	0	1
NZ_CP009712	Yersinia pseudotuberculosis IP 32953 strain IP32953 chromosome, complete genome	9 crisprs	DEDDh,DinG,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	1	13	5
NZ_CP009710	Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_2, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6666 : 30093

Enterobacteria_phage(50.0%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011191374.1\|6666_7635_-\|protease	T3SS effector cysteine protease YopT	NA	NA	NA	NA
WP_011191373.1\|8108_8657_+	hypothetical protein	NA	NA	NA	NA
WP_071879999.1\|9261_9879_+	conjugal transfer protein TraT	NA	NA	NA	NA
WP_002220902.1\|11896_13063_+	plasmid-partitioning protein SopA	Q7Y3Y6	Yersinia_phage	3.5e-196	85.3
WP_011191369.1\|13059_14025_+	ParB/RepB/Spo0J family plasmid partition protein	Q7Y3Y7	Yersinia_phage	4.0e-89	56.6
WP_157868821.1\|14184_14466_+	hypothetical protein	NA	NA	NA	NA
WP_012414146.1\|15331_15574_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_002213360.1\|15566_15866_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_002229754.1\|16005_16665_-	type III secretion system effector GTPase activator YopE	NA	NA	NA	NA
WP_002213403.1\|16858_17251_+	YopE transcriptional regulator YerA	NA	NA	NA	NA
WP_011191364.1\|18060_19233_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.8e-221	95.6
WP_002213267.1\|20008_20434_+	type III secretion system chaperone SycH	NA	NA	NA	NA
WP_086025330.1\|20581_21681_-\|transposase	IS3-like element ISYps8 family transposase	S5WIU1	Leptospira_phage	5.7e-47	39.3
WP_002229829.1\|21780_22110_-	hypothetical protein	NA	NA	NA	NA
WP_012414143.1\|22248_22713_-	hypothetical protein	NA	NA	NA	NA
WP_002213258.1\|22731_23283_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	5.9e-77	80.3
WP_002213256.1\|23446_25762_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	1.0e-279	51.6
WP_011191362.1\|26746_28045_+	trimeric autotransporter adhesin YadA	Q9MCI8	Enterobacteria_phage	2.0e-11	54.2
WP_106461760.1\|28047_28347_-	hypothetical protein	NA	NA	NA	NA
WP_042469136.1\|28373_28643_-\|transposase	transposase	NA	NA	NA	NA
WP_002213246.1\|28711_29170_+	hypothetical protein	NA	NA	NA	NA
WP_002213244.1\|29341_29659_+\|transposase	transposase	NA	NA	NA	NA
WP_012414142.1\|29685_30093_+\|transposase	transposase	S5FNT8	Shigella_phage	4.4e-21	42.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009712

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009712_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009712_1

1005240-1005507

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR

4 spacers

DEDDh

The CRISPR arrays of NZ_CP009712_1

>merge|NZ_CP009712|1|1005240-1005507|CRISPRCasFinder,CRT,PILER-CR
TTATTGGGCTGCCTGTGCGGCAGTGAACATGCAAAGGTGGTGATTTCGCCGCCAGCCTGATTTCTAAGCTGCCTGTGCGGCAGTGAACAAGAGCACGATCATTTTAGCAGCGAGGCCCAGTTTCTAAGCTGCCTGTGCGGCAGTGAACTCTAATATGATAATTAGTGGAAAAAATATTGTTTTCTAAGCTGCCTGTGCGGCAGTGAACTTGTCATTGTGACAACCTTCTGTGCCTTACTTTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009712|1|1|1005240-1005507|CRISPRCasFinder
TTATTGGGCTGCCTGTGCGGCAGTGAAC	ATGCAAAGGTGGTGATTTCGCCGCCAGCCTGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGAGCACGATCATTTTAGCAGCGAGGCCCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCTAATATGATAATTAGTGGAAAAAATATTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTCATTGTGACAACCTTCTGTGCCTTACTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009712|1|1|1005240-1005507|CRT
TTATTGGGCTGCCTGTGCGGCAGTGAAC	ATGCAAAGGTGGTGATTTCGCCGCCAGCCTGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGAGCACGATCATTTTAGCAGCGAGGCCCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCTAATATGATAATTAGTGGAAAAAATATTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTCATTGTGACAACCTTCTGTGCCTTACTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009712|1|1|1005300-1005507|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAGAGCACGATCATTTTAGCAGCGAGGCCCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCTAATATGATAATTAGTGGAAAAAATATTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGTCATTGTGACAACCTTCTGTGCCTTACTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009712.1\|WP_002217522.1\|1001621_1001939_-\|DUF496-family-protein	unknown	unknown	gnl\|CDD\|180070
NZ_CP009712.1\|WP_002216312.1\|1007853_1008945_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NZ_CP009712.1\|WP_012304241.1\|1002372_1003482_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187547
NZ_CP009712.1\|WP_002211919.1\|990685_991831_-\|FMN-dependent-L-lactate-dehydrogenase-LldD	unknown	unknown	gnl\|CDD\|183033
NZ_CP009712.1\|WP_011192123.1\|1012887_1013544_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009712.1\|WP_002211896.1\|1015383_1016283_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NZ_CP009712.1\|WP_032467070.1\|998403_1001478_+\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NZ_CP009712.1\|WP_002211898.1\|1013850_1014678_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NZ_CP009712.1\|WP_011192131.1\|993417_994260_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP009712.1\|WP_002216393.1\|994307_995048_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187626
NZ_CP009712.1\|WP_002211917.1\|992108_993386_-\|L-fuconate-dehydratase	unknown	unknown	gnl\|CDD\|239440
NZ_CP009712.1\|WP_002231208.1\|1015053_1015101_+\|his-operon-leader-peptide	unknown	unknown	unknown
NZ_CP009712.1\|WP_012413636.1\|995475_995898_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP009712.1\|WP_002211911.1\|995906_997211_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP009712.1\|WP_011192125.1\|1009230_1010787_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009712.1\|WP_157131899.1\|1012180_1012471_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374732
NZ_CP009712.1\|WP_011192127.1\|1003774_1005205_+\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NZ_CP009712.1\|WP_011192122.1\|1016286_1017618_+\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NZ_CP009712.1\|WP_011192124.1\|1010783_1011779_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP009712.1\|WP_011192126.1\|1006002_1007394_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605

Protein	Function_ID	Function_description	E-value
NZ_CP009712.1\|WP_002217522.1\|1001621_1001939_-\|DUF496-family-protein	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	5.26004e-59
NZ_CP009712.1\|WP_002216312.1\|1007853_1008945_-\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NZ_CP009712.1\|WP_012304241.1\|1002372_1003482_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187547	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs. SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.86643e-61
NZ_CP009712.1\|WP_002211919.1\|990685_991831_-\|FMN-dependent-L-lactate-dehydrogenase-LldD	gnl\|CDD\|183033	PRK11197, lldD, L-lactate dehydrogenase; Provisional.	0
NZ_CP009712.1\|WP_002211896.1\|1015383_1016283_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	6.63843e-161
NZ_CP009712.1\|WP_032467070.1\|998403_1001478_+\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	2.50527e-126
NZ_CP009712.1\|WP_002211898.1\|1013850_1014678_-\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.54107e-68
NZ_CP009712.1\|WP_011192131.1\|993417_994260_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.24466e-106
NZ_CP009712.1\|WP_002216393.1\|994307_995048_-\|SDR-family-oxidoreductase	gnl\|CDD\|187626	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs. Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).	1.05065e-117
NZ_CP009712.1\|WP_002211917.1\|992108_993386_-\|L-fuconate-dehydratase	gnl\|CDD\|239440	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0
NZ_CP009712.1\|WP_012413636.1\|995475_995898_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	1.71432e-55
NZ_CP009712.1\|WP_002211911.1\|995906_997211_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.17308e-74
NZ_CP009712.1\|WP_011192125.1\|1009230_1010787_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP009712.1\|WP_157131899.1\|1012180_1012471_+\|hypothetical-protein	gnl\|CDD\|374732	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein. Tai4 is a new form of autoimmunity protein for a type VI secretion system, T6SS. T6SS has roles in interspecies interactions, as well as higher order host-infection, by injecting effector proteins into the periplasmic compartment of the recipient cells of closely related species. Pseudomonas aeruginosa produces at least three effector proteins to other cells and thus has three specific cognate immunity proteins to protect itself. Tae4, or type VI amidase effector 4, in Enterobacter cloacae has a cognate Tai4 or type VI amidase immunity 4 protein. The effector is Tae4, pfam14113.	4.0065e-14
NZ_CP009712.1\|WP_011192127.1\|1003774_1005205_+\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NZ_CP009712.1\|WP_011192122.1\|1016286_1017618_+\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NZ_CP009712.1\|WP_011192124.1\|1010783_1011779_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	2.16773e-72
NZ_CP009712.1\|WP_011192126.1\|1006002_1007394_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	5.10909e-45

>NZ_CP009712.1|WP_011192127.1|1003774_1005205_+|exodeoxyribonuclease-I
MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQLYNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLNNSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS
>NZ_CP009712.1|WP_012304241.1|1002372_1003482_-|NAD-dependent-epimerase/dehydratase-family-protein
MKKLLLTGATGFLGGAVLEKLLLASSDFNYLLLVRANTPEQGLMRIRENLEKFYLPNELINKININHVLLGDLAEPDSFINDVRIDDVTHVINCAAIASFGNNPLIWKVNVEGTLAFGKRMAQVAGLQRFVHVGTAMACTPEADTVVDERVLSTENDAHLVEYTKSKSAIECLLAEHCPTLPLVFARPSIVVGHTRLGCQPSSSIFWVFRMALMLRKFMCSLDDHIDVIPVDYCADALLYILEYPNLPDNIYHISAGEKGSVSFSEIDQAMSVAAKQKPVGVNYSQVEYTALVQMRNQLKGIFGPCNERLMLKAMRLYGSFAMLNVRFSNERLLSLGMPRTPRFTDYIARCVESSHGMTIQQQMAVDFK
>NZ_CP009712.1|WP_002217522.1|1001621_1001939_-|DUF496-family-protein
MDNASKPTFQDVLEFVRMFRRKNKLQREIVDNEKKIRDNQKRVLLLDNLSEYIKPGMSIEEVQAIIANMRGDYEDRVDDYIIKNADLSKERRELSKKLKAMGEVK
>NZ_CP009712.1|WP_032467070.1|998403_1001478_+|inverse-autotransporter-beta-barrel-domain-containing-protein
MAAETVGASDEKPRSASQAEQSTANAATRLASILTNDDSTKQASSIARGTAANAGNEALQKWFNQFGSAKVQLNLDEKLSLKGSQLDVLLPLTDSPDLLTFTQLGGRYIDDRVTLNVGLGQRHFFAQQMLGYNLFVDHDASYSHTRIGVGAEYGRDFINLAANGYVGVSGWKNSPDLDKYDEKVANGFDLRSEAYLPTLPQLGGKLIYEQYFGDEVGLFGVDNRQKNPLAVTLGVNYTPIPLFTVGVDHKMGRAGMNDTRFNLGFNYAFGTPLAHQLDSDAVAIKRSLMGSRYNLVDRNNQIVMKYRKQNRVTLELPARVSGAARQTMPLVANATAQQGIDRIEWEASALTLAGGKITGSGNNWQITLPSYLSGGEGNNTYRISAIAYDTLGNASPVAYSDLVVDSHGVNTNASGLTAAPEILPANASASSVIEFNIKDNANQPITGIADELAFSLELVELPEELAKAKARSVPLKTVSHTLTKITESAPGIYQATLTSGSKPQLINITAQINGVPLADVQTKVTLIADESTATLQTSSLQIITNGSLADDTDANQIRAVVVDAYGNKLSGVQVNFTVGNNAKITETTLSDKQGGVTAAITSTKAGTYTVTAELNGVTQQIDVNFIPDAGTATLDDSDEYKLQWVTNGQVADGESTNSVQLTVVDKFGNTVPGVDVAFTTDIGAIISEVTPTDANGVATAKIISSQAKSHTVKATLNRKEQTVEVNFIADTATAEITANNFTVEVDGQVAGSGTNQVQALVVDKKGNPVANMTVNFTATNGVVAETTSAKTDENGKVTTNLSMTNVGGTISTVTATMINSANVTSTQDKPVIFYPDFTKATLNTPANTYSGFNINSGFPTTGFKNTHFQLSPHGITGANSDYDWVSSHPNVSVSNTGAITLQDNPGGKVTITATWKHDSSKVFTYDFTLNYWVGLYSSTNLSWAQANASCINAGMRLPTNSEVSAGQDVRGVGSLFGEWGNLNAYPSFPTAQIIWTSVDTNDFHIDTGLTHSASNVTLAYMCIK
>NZ_CP009712.1|WP_002211911.1|995906_997211_-|MFS-transporter
MSNFNHYPDPTLNSAIKKAWYRLMPLMFIMYFVAFIDRINVGFAKDAMSADIGLSQSAFALGAGIFFAAYALFGIPANLMMNKLGAKVWLSSTTVVWGLLSAGTGLVSNEYQFVILRFLLGVAEAGFYPGILLLASIYFPNKIRASVIGIFVLGVPAALTLGSPISGALLDMQGFLGQPGWFWMFLLEGLPAVGLGIFAFFYLDDSPATARYLNPEEKQALLTQLSIEQSDTESSSVKAVLLSPKVWHLALIYGTIQVGVYGLIFFLPSQVATLLGSTLGFKESLVAAIPWAFSALGVYYIPRYADRKTHRRNPIATLNLVVAAIGLIISAYASPVLAIAALCLCAIGFLAVQPIFWTFPAQILSGKALAAGIGFCTTMGAFFSFLAPIIRVEAESQFNSPPAGLITLALFSLLSATLIFSLKFWPAKATAEVI
>NZ_CP009712.1|WP_012413636.1|995475_995898_+|thiol-disulfide-oxidoreductase-DCC-family-protein
MSAPLPYIKPGERVIIYDGVCALCTGWVNFLIRHDRRHTVRLSAVQSKKGRALLEWAELPTDKINTLVLIENQQVYLRSEAIFRVIANLPWPWRILGVLRIFPRPLRDRCYDGIALNRYRLFGRYDAVRKLKADHERRFL
>NZ_CP009712.1|WP_002216393.1|994307_995048_-|SDR-family-oxidoreductase
MNLKGKKALVTAAGQGIGFNTATLFARKGAEVIASDINIAALSNIPGITAVSLDVTDTLAINDVAQAIGPIDVLFNCAGVVHSGDILTCSEQEWQFALDLNVTAMFHMIRAFLPGMIACQQGSIINMSSVASSIKGVPNRFAYSTSKAAVIGLTRSVAADYVTQGIRCNAICPGTVESPSLRQRIAVQAHAEGRSEADVFQAFAARQPIGRIGKAEEIAQLALYLASDASAYTTGTIHIIDGGWSN
>NZ_CP009712.1|WP_011192131.1|993417_994260_-|fumarylacetoacetate-hydrolase-family-protein
MKLLRYGPVGEERPALLDELGEIRDLSAHIEDISGKFLLPATLYKLRQLDSASLPLVRGEQRLGACVGHVGKFICVGLNYADHAAETGAEIPQEPVIFNKWTSAIIGPNDDIEIPRNSVKTDWEVELGVVIGTGGRYIGEANAMSHVAGYCVVNDISEREFQLEHGGTWDKGKGCDTFGPIGPWLVTRDEIPDPHQLGLWLDVDGRRYQNGSTRTMIFKIPQIISYLSRFMSLQSGDVISTGTPPGVGLGQKPPVYLHAGQIMRLGIEGLGEQCQKTIQA
>NZ_CP009712.1|WP_002211917.1|992108_993386_-|L-fuconate-dehydratase
MTIITALRTEDVRFPTSLELDGSDAMNPDPDYSAAYVILDTDNPALSGHGLTFTIGRGNEICCVAIHALEHLIVGRDLASMTANMGKFWREFTSDSQLRWIGPEKGAIHLATGAVINAVWDLWSKAEGKPLWRLVADMSPEELVRCIDFRYITDCITPEEALTLLQQRAHNKALRLEKLQDEGYPCYTTSAGWLGYPDDKLRRLCQDAVDAGFDYLKLKVGRDLEDDIRRVRITREVLGPDRKLMIDANQIWETNEAIPWVNQLAFANPWFIEEPTNPDDIEGHRRIRQGVAPVKVATGEMCQNRIMFKQFIMREAIDVVQIDACRLGGVNEVLAVMLMAAKYDLPVCPHAGGVGLCEYVQHLAMIDYLCIAGTDKGRVIEYVDHLHEHFVHPCVIKNAAYMPPEQPGFSIEMHQSSIEKYRFRV
>NZ_CP009712.1|WP_002211919.1|990685_991831_-|FMN-dependent-L-lactate-dehydrogenase-LldD
MIISASTDYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRDAHSGMSGPNAAARRLLQAIAHPQWAWDVGLNGKPHDLGNISAYLGKPTTLEDYMGWIATNFDPSISWKDLEWVREFWQGPMIIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSLAVSERG
>NZ_CP009712.1|WP_011192126.1|1006002_1007394_-|APC-family-permease
MAHDATVAVGTNQTGTNNRVQLRKTLTLVQVVMMGLAYLQPMTIFDTFGIVSGLTDGHVATSYAIALIAVLFTAVSYGKLVKRFPSAGSAYTYAQKSISPNVGFMVGWSSLLDYLFMPMINILLAKIYLEAIFPGVPSWIFVGALVSLMTLFNLRGINIVANLNSVIVVVQVAIMVVFMGLLIHGVYQGEGAGTLVSARPFYSENAHLVPMITGATILCFSFLGFDGISSLSEETPNAGKVIPKAIFLTALIGGIIFIAVSYCLQLYFPNISRFTDPEASQPEIMLFVAGKFFQSVILCFSCVTVLASGMAAHAGVSRLLYVMGRDGVFPEKVFGYVHPKWRTPAINVLLVGGVALSAISFDLVTATALINFGALVAFTFVNLSVIAQFYVRERRNSTFKDHFNYLILPMIGAGTVGVLWVNLESSSMTLGLVWGAIGLSYMVWKTRAFRRALPQFTEEPAQL
>NZ_CP009712.1|WP_002216312.1|1007853_1008945_-|oxidoreductase
MSANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGPQAVRAKFSTHCSQSTVADLVSAAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIAATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIMLHAPVEYLLAGIGDTLAKWYEAVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIVAFNQLGLPTHLAALDVDINDREAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIAAQH
>NZ_CP009712.1|WP_011192125.1|1009230_1010787_+|sugar-ABC-transporter-ATP-binding-protein
MSSIPPSRLEMRNISISFSGFHALQEVDFTLEGGSTHALIGANGAGKSTLMAILSGAHNHYRGEIFIDGQPIDIHSPRQARQHGIHVVQQEVDVALIPTLSVAENIMLDELADRGHLFNWPQLYRQAEALLEQLELKLNVRQRLESCTLAEKQQVLLARALSHQCRFLILDEPTAPLDQEESARLFRVVRRLQSEGIGIVFISHRIHELREVCDQLTVLRDGRRVSHDTMEGMSGEQIVEKMLGHTLEDIFPPRRAAVSSKTLLSKTRLSKTLLPKTLLSVSGLHDQYKLRDISLTLHQGEILGIAGLAGAGKTELCKALFGDTPSTLERGELSGKAWRPRSPDRSVAQGLALVPEERRKEGIFIDEGIPMNLSVAADDSFSRWSLFSRRQELSWAKELIERLGIRTSSPQQKLARLSGGNQQKVAIGKWLRGDAQVLIFDEPTKGVDIKAKQDLFSLIDQLAQQGKGIIYASGEFSELVGLCDRICVLWDGRIVAELNAAEVDEETLLLFSTGGTPQ
>NZ_CP009712.1|WP_011192124.1|1010783_1011779_+|ABC-transporter-permease
MSKELPLPDVQSWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIVTVIAIGVSISLSIGGFDLSVGSTASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFNAFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSMLLPSGDMAEGVIPEIFSALGQVPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLAALGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNGLVMLSVPYYAMDIIKGLVLAMALALTYIQKR
>NZ_CP009712.1|WP_157131899.1|1012180_1012471_+|hypothetical-protein
MQQKNNLENFALSICLAEGFPDGEINSEAFSAVGAYVELGAYPVEAYEEVSELAKKFLEKKYISKNGESKLTVMKCIDLSQSSELSAIKDKYTRHI
>NZ_CP009712.1|WP_011192123.1|1012887_1013544_+|hypothetical-protein
MSNYINIARRIAKIILSPDSAIGLMHGVLSVPKDLGYLVYGYLDTDSRYLRETEHIRMAKAIRYGILQNHNFVKTIETVLGIFNKYVPKEKQESIYSRSMFSLAGRTAANSYIFGKMASIIAQRTAFLVTLQGGAAGNILLIGGMAERSVYTSRSLQRKNPEIYYALYPRNYDLLYFLIEPALEPFVEALQVRRNHGDAAFNKIIDMVENELKTKRAA
>NZ_CP009712.1|WP_002211898.1|1013850_1014678_-|SDR-family-oxidoreductase
MKKVAIIGLGWLGMPLAQSLSRRGIDVVGSKTTPDGVDAARMSGINCYPLVLTPELICEPDDLAQLMAVDALVITLPASRTTAGGDHYFQAVQQVVDSALAFGVPRIIFTSSTSVYGETRGRIKESSPLQPVTVAGKTLMALEQWLHQLPHTSVDILRLAGLVGTDRHPGRFLAGKTGVKGGSQGVNLVHQEDVIAAIELLLNRPKGGHLYNLCAPIHPRKRDFYPACARALQLTPPEFAVEEQEGANREIDGSKICSELGFEYLYPDPSRMPLN
>NZ_CP009712.1|WP_002231208.1|1015053_1015101_+|his-operon-leader-peptide
MNRVQFNHHHHHHPD
>NZ_CP009712.1|WP_002211896.1|1015383_1016283_+|ATP-phosphoribosyltransferase
MLDKTRLRIAMQKSGRLSDESQELLSRCGIKINLQQQRLIAFAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGDDPRYFTLRRLDFGGCRLSLAAPLDAEYTGPQCLQDTRIATSYPHILKQYLDKQGVRFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMSVDKQQLIDRLMTRIQGVIQARESKYIMMHAPSERLDEIITLLPGAERPTILPLAGDKSRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>NZ_CP009712.1|WP_011192122.1|1016286_1017618_+|histidinol-dehydrogenase
MQPTNFNTLINWQQCSEEQQKALLSRPAINASERITATVSDILDRVKAEGDSALRDFSQRFDHVQVADIRITASEIAAASARLSDDVKHAMAQAVRNIEIFHNAQKMPVVDVETQPGVRCQQITRPIASVGLYIPGGSAPLPSTVLMLGTPARIAGCQRVVLCSPPPIADEILYAAQLCGIQEVFQIGGAQAIAAMAFGSESVPKVHKIFGPGNAYVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPAFIAADLLSQAEHGPDSQVILLTPDAAIAQAVAVEVEQQLALLSRADIARQALESSRLIVTNDLQQCIDISNAYGPEHLILQIRQPEEIIDQIDNAGSVFMGDWSPESAGDYASGTNHVLPTYGYTSTYSSLGLADFVKRMTVQQLTPQGLLGLASTIETLAQAEQLTAHKNAVTLRVTALNNALTAVNKE

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Crispr_ID: NZ_CP009712_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009712_2

1130360-1130481

Orphan

Consensus_repeat	Method
CAATTGATTATATCGATTAATATTGGCATTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009712_2

>merge|NZ_CP009712|2|1130360-1130481|CRISPRCasFinder
CAATTGATTATATCGATTAATATTGGCATTAAGAGATTTAATACTGCAATATGTTTTTTTGGAAAAAACTCAATCCTCCCCCTCCACTACAATTGATTATGTCGATTAATATTGGCATTAAG

>NZ_CP009712|2|2|1130360-1130481|CRISPRCasFinder
CAATTGATTATATCGATTAATATTGGCATTAAG	AGATTTAATACTGCAATATGTTTTTTTGGAAAAAACTCAATCCTCCCCCTCCACTA
CAATTGATTATGTCGATTAATATTGGCATTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009712.1\|WP_002213046.1\|1137374_1137704_+\|sulfurtransferase-TusE	unknown	unknown	gnl\|CDD\|225472
NZ_CP009712.1\|WP_002213054.1\|1139378_1139696_+\|heat-shock-protein-HspQ	unknown	unknown	gnl\|CDD\|184526
NZ_CP009712.1\|WP_002213036.1\|1129784_1130003_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009712.1\|WP_002213026.1\|1125018_1125738_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NZ_CP009712.1\|WP_002213049.1\|1137755_1138034_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|184675
NZ_CP009712.1\|WP_011192072.1\|1141920_1143975_-\|DNA-helicase-IV	unknown	unknown	gnl\|CDD\|182930
NZ_CP009712.1\|WP_002228570.1\|1122946_1123387_-\|lipocalin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372819
NZ_CP009712.1\|WP_002213060.1\|1141395_1141860_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|179969
NZ_CP009712.1\|WP_002213024.1\|1123473_1124262_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP009712.1\|WP_002213058.1\|1140536_1141217_+\|DUF2057-family-protein	unknown	unknown	gnl\|CDD\|179619
NZ_CP009712.1\|WP_012105362.1\|1126984_1127722_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NZ_CP009712.1\|WP_011192074.1\|1127723_1129007_-\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	unknown	unknown	gnl\|CDD\|238430
NZ_CP009712.1\|WP_002213025.1\|1124264_1125017_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235936
NZ_CP009712.1\|WP_002213038.1\|1130733_1131480_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440
NZ_CP009712.1\|WP_002213052.1\|1138127_1139318_+\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	unknown	unknown	gnl\|CDD\|185082
NZ_CP009712.1\|WP_002213034.1\|1128996_1129521_-\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|223835
NZ_CP009712.1\|WP_002213017.1\|1122660_1122909_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180851
NZ_CP009712.1\|WP_002213056.1\|1139804_1140221_-\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
NZ_CP009712.1\|WP_011192073.1\|1131633_1134051_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366708
NZ_CP009712.1\|WP_002213028.1\|1125730_1126969_-\|hydroxymethylglutaryl-CoA-synthase-family-protein	unknown	unknown	gnl\|CDD\|225959

Protein	Function_ID	Function_description	E-value
NZ_CP009712.1\|WP_002213046.1\|1137374_1137704_+\|sulfurtransferase-TusE	gnl\|CDD\|225472	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism].	2.4785e-71
NZ_CP009712.1\|WP_002213054.1\|1139378_1139696_+\|heat-shock-protein-HspQ	gnl\|CDD\|184526	PRK14129, PRK14129, heat shock protein HspQ; Provisional.	3.64231e-72
NZ_CP009712.1\|WP_011192072.1\|1141920_1143975_-\|DNA-helicase-IV	gnl\|CDD\|182930	PRK11054, helD, DNA helicase IV; Provisional.	0
NZ_CP009712.1\|WP_002213026.1\|1125018_1125738_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	1.17502e-35
NZ_CP009712.1\|WP_002213049.1\|1137755_1138034_-\|acylphosphatase	gnl\|CDD\|184675	PRK14426, PRK14426, acylphosphatase; Provisional.	1.02172e-54
NZ_CP009712.1\|WP_002228570.1\|1122946_1123387_-\|lipocalin-like-domain-containing-protein	gnl\|CDD\|372819	pfam13924, Lipocalin_5, Lipocalin-like domain. This family includes domains distantly related to lipocalins. However, they do contain the important GXW motif in the first strand. The protein in this family include aln5, which is involved in biosynthesis of alnumycin. The family also includes the ZFK protein from Trypanosoma brucei which is a protein kinase. This domain is at the C-terminus of that protein. The domain is also found as the C-terminal domain in StiJ a protein involved in producing stigmatellin. This domain has been assumed to catalyze a final cyclisation reaction.	5.67247e-46
NZ_CP009712.1\|WP_002213060.1\|1141395_1141860_+\|methylglyoxal-synthase	gnl\|CDD\|179969	PRK05234, mgsA, methylglyoxal synthase; Validated.	2.55286e-93
NZ_CP009712.1\|WP_002213024.1\|1123473_1124262_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.49415e-40
NZ_CP009712.1\|WP_002213058.1\|1140536_1141217_+\|DUF2057-family-protein	gnl\|CDD\|179619	PRK03641, PRK03641, DUF2057 family protein.	4.09411e-122
NZ_CP009712.1\|WP_011192073.1\|1131633_1134051_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366708	pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.	8.27787e-32
NZ_CP009712.1\|WP_011192074.1\|1127723_1129007_-\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	gnl\|CDD\|238430	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.	2.45409e-137
NZ_CP009712.1\|WP_002213025.1\|1124264_1125017_-\|enoyl-CoA-hydratase	gnl\|CDD\|235936	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated.	2.57932e-133
NZ_CP009712.1\|WP_002213038.1\|1130733_1131480_+\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.01866e-70
NZ_CP009712.1\|WP_002213052.1\|1138127_1139318_+\|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI	gnl\|CDD\|185082	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI.	0
NZ_CP009712.1\|WP_002213034.1\|1128996_1129521_-\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|223835	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism].	1.09929e-42
NZ_CP009712.1\|WP_002213017.1\|1122660_1122909_-\|acyl-carrier-protein	gnl\|CDD\|180851	PRK07117, PRK07117, acyl carrier protein; Validated.	4.77778e-09
NZ_CP009712.1\|WP_002213056.1\|1139804_1140221_-\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	1.53332e-71
NZ_CP009712.1\|WP_012105362.1\|1126984_1127722_-\|SDR-family-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	3.19775e-68
NZ_CP009712.1\|WP_002213028.1\|1125730_1126969_-\|hydroxymethylglutaryl-CoA-synthase-family-protein	gnl\|CDD\|225959	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].	1.57028e-141

>NZ_CP009712.1|WP_002213036.1|1129784_1130003_-|hypothetical-protein
MYLLQQIELCPDQILHAWKISQNPQVSEVFEIEVVSSEEDAEEAVLFWKAYFSSLGETVIDGRHVGDTFSRF
>NZ_CP009712.1|WP_002213034.1|1128996_1129521_-|beta-hydroxyacyl-ACP-dehydratase
MKNTELNFLKTNFLFNQDITNELNTSFGQDIIKKMIPHREPFLMVDNVELINIECRLIKAIRRVDEKDPVFGGHFPNDPIYPGVLQQESMFQTALILMYFLLNETAIPPAEENIIHAVGTRVYDVFHLSAVRPGELMTIRCCITEYDTFLATAIVQITVNDQIVTVGKGEFHVF
>NZ_CP009712.1|WP_011192074.1|1127723_1129007_-|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein
MSSDRIVITGVAINTPIGDTLDLVGNNLLSGKSAIGYWRNFDTSNIYSKIGGQIPDYDIEGKLHAFSNRIPDIVLSRAEKVFKQTTKGVQLSVLMAMEAWLDAGLFEHIIDPFDCGIICGGHNLSDKYLLDQQKIFSDEPEFIDAFSGLNSLDTDHSSSVAQVLNTKGFAYLVGGTCATGNIAIQTAINAIKVDKKQVVAVVCPMASFHPMMLHSLTILEAICYSQYQDTPTKASRPYDINRSGFLPSEGGAVLILEQAEHAKNRGAKIYAELLGASVNSDANHLGDPSHEGQVRVIQDVLKKCNISPEQVDYVSAHATSTKLGDIVELKSIKRVFGSHAEKLIINAPKSLLGHTMWASGVVEAAIAIWQMRQGEFHQSHNIETLDPAVELNVCASGNIKKEVNIFLNNSFGMGGINSASLFSRYHG
>NZ_CP009712.1|WP_012105362.1|1126984_1127722_-|SDR-family-oxidoreductase
MNLFISGGASGIGRSVVIAALSKGWNVGFSYHNNKEGAQQLLDIAVAEFPRQLCRAYQLDVIDSGAVEYVGDRLLVDFSNIDAVVCNAGIDLPGNLVSMTDEDWALVLNTNLTGTFYLIRYFLPLFLANKYGRIVTLSSLAKDGSSGQAAYAASKAGLVGLTKTTAKEYGHFGITANVVVPGLINTEIIGDDIKGIKNFFAQYAPVGRLGSPSEVAEVILFLVAKESSYVNGAVFNVTGGIDWVY
>NZ_CP009712.1|WP_002213028.1|1125730_1126969_-|hydroxymethylglutaryl-CoA-synthase-family-protein
MNSIGIEKISIYPSSLALKLSELAQARGGDNKYIQESLMVIKRSLVPQWEDAVTLAVNSAKDMLNDQDRSDIGLFIIATESGLDQEKAISTWAHRYLGLPATCRVFELKSACHAGAAALKMAESWISSGLNRGKKVLLINVDISNNMICHGKMEYSLGAGAIALLISDNPVFAVIETGKSGIHTHEVTDVIRPLPWKEVAFDVEASLFSYMDGLENAFEEYCHQTPEARESTYFNYNLYHVPFPGISKEAHKVLLELQGLFGKEALATSFKQKVMPSLYYAQKIGATYCGSIFLSLFSLMVKAPEIKSGDRIGVYSYGSGSCAEYFSMQVGDQAVEIAQQQGAALDILLTQRKILDVAAYEQLENARSAQMQGKDYRLDGDNLQDWYTHHYSGSGLLILERIDNHLRRYRYA
>NZ_CP009712.1|WP_002213026.1|1125018_1125738_-|enoyl-CoA-hydratase/isomerase-family-protein
MHEYVTVPIKFSPDSLADFENRFISALNDERYKVIVLIGGPTYFSMGMDLTYISTHYDADFVSQFCHILKMVRNSHKPVLAKVEGNVIAGGLALLSVVDFILSSDSASFSLPEVTFGITPTIAMSCLLERIRPHHLKYFVWSSSVISAKQALKWGLIDQINTLENLDQDIQVISNKLSRIPKSAIRESKLLLAEQYSFEESLDLGSHLLVERLNDAQTIEKIRHYLEDIKLFNDEYADD
>NZ_CP009712.1|WP_002213025.1|1124264_1125017_-|enoyl-CoA-hydratase
MKKIYLRKSDEGIAFMHINDPVNKNAIDDEFCLQLHGIVDTIKQDKTIKVLILVGLPDIFCTGGTEAFLQSLITHYKTNIEHEYANHLKHFLNIPIPVIAAMEGSATGGGLVLGLYADILVAAEESRYGMSFMNMGFTPGMGSTAMSKEAFGYYTGFEMMVTGNYIRGSELKGKCCFNYILPRAMVMEKAIELATSIAEKPRHSLELLKKYMSIDRRKMLEETSTIEAFMHHIAFNQSNIEQQIQDNYTG
>NZ_CP009712.1|WP_002213024.1|1123473_1124262_-|SDR-family-oxidoreductase
MLNNLSEMTVLVTGGTKGIGRATVESFVKAGAKVYGTYFWGDNLDELENHFSQYLNRPVFLQADISDEEITTQLIEKIAQENKKIDILILNAAFAPQFKDTYKFRGLLDSIEHNSWPLITYIDCIKQHFGQYPGYVVAITSEGHRSCHITGYDYVAASKAVLETLTKYIGARENIIINCISPGVVDTEAFELVFGKKAQAFIRKFDPDFIVSPEAVGNVSVALCSGLMDAVRGQVITVDNGRMFTDNFTKWIDMIETNFIEK
>NZ_CP009712.1|WP_002228570.1|1122946_1123387_-|lipocalin-like-domain-containing-protein
MSNPNRNLFLGRWKLESCIGNSGGIHIYPIGREPFGMLIYTEQYMMVFISSVERTQFSTEDIRAIPSEQIVADFPKFETYCGHYIVNHDEKIVTHFIDNSKIPNQIGTQFRRYFSFEHEKLVLKSIDSLLLNDESWLFELVWNKQE
>NZ_CP009712.1|WP_002213017.1|1122660_1122909_-|acyl-carrier-protein
MDRDHIASIVKKHIVNSIDGAKEHEIDLQKSMADYGASSLDIVSVVSGVMRELKIKIPRTELKNIKSINGLIDLFVTSSSES
>NZ_CP009712.1|WP_002213038.1|1130733_1131480_+|SDR-family-oxidoreductase
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADMNSESDIKHLIEMTLERFGSLDVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMKYQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIEGLTKTAALEVATTGVRINSISPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTITIDGGYTAQ
>NZ_CP009712.1|WP_011192073.1|1131633_1134051_+|GNAT-family-N-acetyltransferase
MTTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEGRLIALVPLYLQEFRSADPLGLLIFSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYARIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNINYMVDKFSIELDAFPDFDSFAQALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQLAVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAVYRYAFEKGINLIECGRLNSHIKTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLDGEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEADVIRTIVFAKERGMEVSVRGSGHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHVKEVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGRLRHVSETQEPDLFWAARGAGPCSFFVVTRFYLSCYSLPRVITNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTSGDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAINQPSNFETIYEQFSSMVVSKRFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYAQWDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRLEYDPDGVFVDVQQLEEHGDQPGANN
>NZ_CP009712.1|WP_002213046.1|1137374_1137704_+|sulfurtransferase-TusE
MLEFEGRIIDTDAQGYLKNSTDWSEALAPVLAEQEGITLTEPHWEVVRFVRAFYQEFNTSPAIRMLVKAMAQKYGEEKGNSRYLYRLFPKGPAKQATKIAGLPKPVKCI
>NZ_CP009712.1|WP_002213049.1|1137755_1138034_-|acylphosphatase
MSKIYIVAYVYGVVQGVGFRYSTQRQAQQLGVTGYAKNCDDGSVEVVASGNPQAVERLMEWIRQGGPRGARVDRLLTEPYPPTPFETFSIRY
>NZ_CP009712.1|WP_002213052.1|1138127_1139318_+|23S-rRNA-(cytosine(1962)-C(5))-methyltransferase-RlmI
MTVRLILAKGREKSLLRRHPWIFSGAVQRLEGDALSGETIDILDSQGKWLARAAYSPESQILARVWTFQQDEVIDCAFFIRRLQQAQNWRDWLAQRDGLNGYRLIAGESDGLPGITIDRFQNFLVLQLLSAGAEYQRETLVSALQHCYPECSIYDRSDVSVRKKEGLPLTQGLICGEMPPALLPISENGMQLFVDIQQGHKTGFYLDQRDSRLAARNYANGRRVLNCFSYTGAFAVAALMGNCQQVISVDTSQSVLDIAKQNIELNQLDLSKTEFVRDDVFQLLRSYRAQGEKFDLIIMDPPKFVENKSQLASACRGYKDINMLAIQLLRPGGILLSFSCSGLMPVDLFQKILADAALDAGHDIQFIEQFRQAADHPVIAAYPEGLYLKGFACRVM
>NZ_CP009712.1|WP_002213054.1|1139378_1139696_+|heat-shock-protein-HspQ
MIASKFGIGQQVRHSLHGYLGVVIDIDPEYSLAPPEPDEVANNKTLRSSPWYHVVIEDDDGQPVHTYLAEAQLTYEDVDAHPEQPSLDELAASIRHQLQAPHLRN
>NZ_CP009712.1|WP_002213056.1|1139804_1140221_-|CoA-binding-protein
MHDKDIADILKKVKTIALVGASDIPSRPSYRVMAYLLQQGYQVTPVNPKLAGELLLGQLVYAELADIPHAIDMVDVFRNSDAAYCIAQDAIAIGAKVLWLQIGVINEQAAILATDAGLQVVMDRCPKIELPRLGLEKG
>NZ_CP009712.1|WP_002213058.1|1140536_1141217_+|DUF2057-family-protein
MKLGLVAGMLAVCFSFSSVAMTLKLTPEIDLLVVDGKNMSGSLLKGADSLELNSGMHQILFKVIKPLPTDPLVLYSSPPLIVVFNAHNTRSVAIKLPVINTLRDGHQFSKNPLYQLIGDNGHPLSVRHDVLRQDHLNNSTTLETVMAAYNVGKYNASVPAFAAIPPSPVSAVPGTTIPVAGVNTPHKTASLQGENVTEQMLQYWFLQANPETQKRFLIWAKKQPIH
>NZ_CP009712.1|WP_002213060.1|1141395_1141860_+|methylglyoxal-synthase
MELTTRTIAARKHIALVSHDHCKKSLLAWVMENRDLLAQHELYATGTTGNLVQKATGIDVHCLLSGPMGGDQEVGALISEKKIDILIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNRSTADFLIGSTLFSSEVTIAIPDYDRYMQQRLDLK
>NZ_CP009712.1|WP_011192072.1|1141920_1143975_-|DNA-helicase-IV
MELKATSFGKHLSQHPYNRVRLLNAGIEVCGDKHQYLIPFNQLVSIQCKRGIVWGELEFELPQQKVVRLHGTEWQETQHFYHYLLGVWQQWSEEMSQVCAEVLHKQVESIKRIEQQDKWFKRSELGQIQVMIREAFSALPMPVERLAAFESCRADYECCLRWLQQGRHSVERCNQQWTARMLEEYQDFFQNVETSPLNASQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRIKQRLGVDSIQAKTFHALALHIIQQGSRKTPVISKLESDSQARRALLIQHWQQQCSEKKAQAKGWREWLTDELEWDVADGDFWQDKRLAARLASRLERWVGLMRMHGGSQAEMIEQANDEVRDLFQKRIRLMAPLLKAWKTALKDEGAVDFSGLIHQAVNLLEKGRFVSPWKHVLVDEFQDISPQRAMLLAALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFSEHFGEGAECALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGNKKSVMILPDEQLEALLDKLSGFVKDGERILILARYHHLRPEVLQKAATRWPKLTIDFMTIHASKGQQADYVIIVGLHEGNDGFPAAARESVLEDVLLPPPEDFPDAEERRLLYVAITRAKHQVWLLQDTARPSIFVSQLSELGALVQRKP

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Crispr_ID: NZ_CP009712_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009712_3

1612043-1612187

Orphan

I-F

Consensus_repeat	Method
TTTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP009712_3

>merge|NZ_CP009712|3|1612043-1612187|PILER-CR
TAAGCTGCCTGTACGGCAGTGAACGCATTGCCGTTGAAGAGATCCGTCGTTGGCTTTTTCTAAGCTGCCTGTGCGGCAGTGAACTGCATCGGTCGTAGAATCACTGTCTCCGAAAGTTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NZ_CP009712|3|2|1612043-1612187|PILER-CR
TAAGCTGCCTGTACGGCAGTGAACGCATT	GCCGTTGAAGAGATCCGTCGTTGGCTTTTTC
TAAGCTGCCTGTGCGGCAGTGAACTGCAT	CGGTCGTAGAATCACTGTCTCCGAAAGTTTTC
TAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009712.1\|WP_011191916.1\|1622216_1623074_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009712.1\|WP_002209745.1\|1621298_1621544_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|372675
NZ_CP009712.1\|WP_011191922.1\|1601224_1602358_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP009712.1\|WP_138921619.1\|1618773_1621086_+\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|273954
NZ_CP009712.1\|WP_002210302.1\|1602381_1603410_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP009712.1\|WP_011191918.1\|1609312_1610839_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP009712.1\|WP_002210296.1\|1611180_1612035_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP009712.1\|WP_011191917.1\|1612696_1618666_+\|alpha-2-macroglobulin	unknown	unknown	gnl\|CDD\|225248
NZ_CP009712.1\|WP_002210300.1\|1605017_1605947_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380623
NZ_CP009712.1\|WP_011191920.1\|1606072_1607059_-\|inositol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|275173
NZ_CP009712.1\|WP_011191924.1\|1598078_1598999_-\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NZ_CP009712.1\|WP_011191921.1\|1603421_1604969_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP009712.1\|WP_011191923.1\|1599205_1601176_-\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|378281
NZ_CP009712.1\|WP_002209748.1\|1623699_1624101_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP009712.1\|WP_032467032.1\|1623066_1623468_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP009712.1\|WP_011191914.1\|1624708_1624960_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009712.1\|WP_041175491.1\|1607352_1609278_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|226471
NZ_CP009712.1\|WP_002209751.1\|1624998_1625238_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009712.1\|WP_011191915.1\|1624205_1624685_-\|Hcp-family-type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
NZ_CP009712.1\|WP_011191913.1\|1626046_1627963_+\|autotransporter-adhesin-YapC	unknown	unknown	gnl\|CDD\|273608

Protein	Function_ID	Function_description	E-value
NZ_CP009712.1\|WP_011191913.1\|1626046_1627963_+\|autotransporter-adhesin-YapC	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	4.35553e-105
NZ_CP009712.1\|WP_002209745.1\|1621298_1621544_-\|transcriptional-regulator	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	5.27401e-36
NZ_CP009712.1\|WP_011191922.1\|1601224_1602358_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.16916e-69
NZ_CP009712.1\|WP_138921619.1\|1618773_1621086_+\|penicillin-binding-protein-1C	gnl\|CDD\|273954	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP009712.1\|WP_002210302.1\|1602381_1603410_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	8.15893e-97
NZ_CP009712.1\|WP_011191918.1\|1609312_1610839_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP009712.1\|WP_002210296.1\|1611180_1612035_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.17523e-68
NZ_CP009712.1\|WP_011191917.1\|1612696_1618666_+\|alpha-2-macroglobulin	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP009712.1\|WP_002210300.1\|1605017_1605947_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380623	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins. The periplasmic binding protein (PBP) IbpA mediates the uptake of myo-inositol by an ABC transporter that consists of the PBP IbpA, the transmembrane permease IatP, and the ABC IatA. IbpA shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge.	4.31227e-120
NZ_CP009712.1\|WP_011191920.1\|1606072_1607059_-\|inositol-2-dehydrogenase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	8.04969e-171
NZ_CP009712.1\|WP_011191924.1\|1598078_1598999_-\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	3.13199e-163
NZ_CP009712.1\|WP_011191921.1\|1603421_1604969_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP009712.1\|WP_011191923.1\|1599205_1601176_-\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|378281	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.	0
NZ_CP009712.1\|WP_002209748.1\|1623699_1624101_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	7.32611e-43
NZ_CP009712.1\|WP_032467032.1\|1623066_1623468_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	4.36414e-40
NZ_CP009712.1\|WP_041175491.1\|1607352_1609278_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|226471	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism].	0
NZ_CP009712.1\|WP_011191915.1\|1624205_1624685_-\|Hcp-family-type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	6.03614e-76

>NZ_CP009712.1|WP_002210296.1|1611180_1612035_+|MurR/RpiR-family-transcriptional-regulator
MTTASNLSELQQQIRDRYDNLSKRLQQVSRYVLDNTNSVAFDTVAVIAERADVPPSTLIRFANAFDFSGFNEMKQLFRMNLVEETASYTDRARLFRAMESEAVPETPLGILQEFARSNAQALQQLAARTEPEMLQRAVELLAQADTIYVVGLRRSFSVAAYLTYALSHLECRPVQLHGLGGMLREQVNSIKARDIVVSISFSPYAEETVMVSEIAASAGARQIVITDSQISPLATFSDLCFVVKEAQVDAFRSQSATLCLVQSLVVALAYQQEAQAGAALAHRQ
>NZ_CP009712.1|WP_011191918.1|1609312_1610839_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
METVANFINGKCVFSCGNSITSGSPRAQTIFNSATGEPIRQVMMSTAQETEQAITAAQQAFASWSRQAPLKRARVMFRFKSLLEQHLDALAQLISEEHGKVYSDAVGELTRGLEVVEFACGIPHLQKGEHSANVGTGVDNHSLMQPLGVCVGITPFNFPAMVPMWMFPIALATGNTFVLKPSEKDPSLAVRLAQLLTEAGLPDGVFNVVQGDKTAVDVLLTDPRVQAVSFVGSTPIAEYIYQTASAHGKRCQALGGAKNHCILMPDADMDMAASAIMGAAYGAAGERCMALSVVLAVGDETADNLCARLEQQISTLRVGPGLAQEPENDMGPLISAPHRAKVLGYIDSGVAQKATLRIDGRGLKVAGHEQGYFVGPTLFDHVTPAMTIYQEEIFGPVLSVVRIADYRSAVDLINRHEYGNGTAIFTRDGGTARRFCEEVQVGMVGVNVPIPVPVAFHSFGGWKRSIFGPLNVHGNDGVRFYTRMKTITARWPEAQHDQGAAFSMPTLG
>NZ_CP009712.1|WP_041175491.1|1607352_1609278_-|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MKTVRMTMAQALVRFLNQQYVAIDGQEVAFVHGVMTIFGHGNVLGIGQALEENPGHLQVHQGCNEQGMAHMAIGFAKQYRRQRIYAVSSSIGPGAANMVTAAATATANRIPLLLLPGDIYASRQPDPVLQQIEQYHDLSISTNDCFRPVSRYWDRINRPEQLMSAMLSAMRVLTDPADTGAVTLCLPQDVQGEAWDYPASFFERRVHRIERRPPDTRRLSDALSLIARKRRPLVVCGGGVRYSGAHEAFRAFVENAQLPFTETQAGKGALPSDHPLNLGGIGVTGGLAANRLAPQADLVIGIGTRLTDFTTGSKALFSHPEVAFLLLNVAEFDALKLDATALIADARVGLEALTEGLAGYRTAWQGDIIEAKAAWCDECQRLWSRTWRPDEVPEVAGHLDDSLQEYAEVLNTTLTQTRVLGLINQHIEDDAIVVGAAGSLPGDLQRLWQVKTADTYHLEYGYSCMGYEIAAAIGAKIAMPHQPVYAMVGDGSYMMLHSELHTAVQEGLKITVLLFDNAGFGCINNLQMGHGMSSFCTESRHRNHESGQLNGPLICVDFAQNAESYGCRAWRVHDEPSLLAALAASRDHPGPVLLDIKVLPKSMTHDYASWWRTGDAQIARSPAVQQAAERTQMKVKRARQY
>NZ_CP009712.1|WP_011191920.1|1606072_1607059_-|inositol-2-dehydrogenase
MFNIALLGAGRIGQVHAANIAAHPETTLWSVVDPNQENAARLVSQYRTRQQSVNEAMADLNVHAVLIASATDTHADLIELAAKHGKTIFCEKPVHLDLARVRDCLKVVKEYGVPLFIGFNRRFDPQFRHLKNEVLAGRIGKPESLLIISRDPSPPPVEYVRVSGGMFRDMTIHDFDMARFIMGEEPVAVFAQGSNLVDPAIGAAGDIDTAFVVLKYASGAMATIVNSRRSAYGYDQRLELHGSQGLLCVGNILENQVQHFGQKGGTRALPEHFFLQRYQAAYAAEWEHFVAVLRGDVQPECGGEEGERALYLADKALESLHSQREISL
>NZ_CP009712.1|WP_002210300.1|1605017_1605947_-|sugar-ABC-transporter-substrate-binding-protein
MKKLILAALIVFTSGVAFAENEQIVFSTPNLAMPFEVHMQRTAVKTAKALGVKLQVLDGQGSSPKQVADLENAITRGAQGFIVSPNDINAISSAVEEIQQAKLPVVTLDRSVESEKKVPHFGANNYKGGEAIANYVKSMFPNGAEIVLLTGQPGSSSNIERTKGIRDSLKTGGDKYRIVVDQTGNWMRSEGMRIIESVLPSLPKPPQVILSANDDMALGAIEALQSHGMKPGEIMVTGFDAVPEALARVREGWMAVTADQRPGYAVTTAMNQLVANIRDQKAITGADFLPTMITKENLDQAERVSEAGK
>NZ_CP009712.1|WP_011191921.1|1603421_1604969_-|sugar-ABC-transporter-ATP-binding-protein
MSQPLLKITDMAKSFSGVWALSNVQLTVEQGEIHALLGENGAGKSTLLKALSGAQPQTHGEIWFNGEMLALDDSPVERQNKGIITIYQEVNLLPNMTVAENMFLGREPRRRQVFVDEKAVNQEAQAILDYLQLNVLPTTAVARLSIAQQQMVEIARALTLNAKLIVMDEPSAALSDSEVESLHRVVRELKGRGVSIIYVTHRLHEVFQLCDRFTVFQDGRYTGSDEVAGTNVEKIIRLMVGRDVVFNRRPASETHHQDQPIRLSVQGLCREKPPLDPHGVALKDISFHVHAGEVLGIAGLVGAGRTEVARCLFGAGAFTSGNFEIDGVPYQPRDPMFALEQGIALVPEDRKKEGAVQGLSIRDNLTLSSLAGLLQWRFFVNTRKEDQLIETYRLALQIKMVNSEQAVRKLSGGNQQKVILARCMALNPRILIVDEPTRGIDVGTKSEVHQVLFDMAKQGVAVIVISSDLPEVLAVSDRVITLSEGRVTGEIHGDDASEERLMTMMAINHNALNAA
>NZ_CP009712.1|WP_002210302.1|1602381_1603410_-|ABC-transporter-permease
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGLSICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDAGYRWWGRGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKNRRGAL
>NZ_CP009712.1|WP_011191922.1|1601224_1602358_-|Gfo/Idh/MocA-family-oxidoreductase
MKEVRIGLIGTGYIGKAHAIAYAQAPTVFELRGKLVREMVAEVSPALAAQRAQAFGFNRFTCDWRELVADPAIDVVDICSPNYLHKEMALAAIHHGKHVYAEKPLALNARDASEMAAAATRAGVKTLVGFNYIKNPSAKLAKEIIERGEIGEVIHFYGTHNEDYMADPNTPIHWHCLQATAGLGTLGDLAAHIVSMAQYLVGEITQVCGDLKTVVVTRPASVGSSARVAVENEDQAHAMVRFVNGAQGVIEASRVACGRKMGLSYMITGTQGAISFTQERMAELKLYLHNDPVNRQGFRTLLVGPTHPEYAAFCMAAGHGIGFNDQKTVEVRDLIDGIAMDTPLWPDFAEGWKVSRILDAIALSHQDSRWVNVTDIV
>NZ_CP009712.1|WP_011191923.1|1599205_1601176_-|5-dehydro-2-deoxygluconokinase
MSVEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLARVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITGTHLSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGGSTNTLDALRGVREVSDAALVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQACRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGADLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWPQEHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPPLASEGWAALNKLIERRDPHCRGVVILGFDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDNYLQLITLWRERGQK
>NZ_CP009712.1|WP_011191924.1|1598078_1598999_-|myo-inosose-2-dehydratase
MRKTEADRHTTAVQLGINPLTWTNDDLPSLGAETSLETCLSEGKEAGFAGFELGNKFSREAGVLGPILEHHQLKLVSGWYSGRLLERSVEEEIVAVRSHLALLRELGAKVMVFAEVSGCIHGEQQTPVHLRPRFPPARWAEYGAKLTAFARYTQALGVQIAYHHHMGTVIESAQDIDNLMIHTGEEVGLLLDTGHLTFAGADPLAVAQRWIARINHVHCKDVRTSVLADVKNRKTSFLDAVLSGVFTVPGDGGVDYPLIMALLKQHGYQGWLVVEAEQDPNVAHPMTYARMGYHNLSRLAHNAGLI
>NZ_CP009712.1|WP_011191917.1|1612696_1618666_+|alpha-2-macroglobulin
MDLLRFLLISPFALIKGLYRLSAYLLRLVGRLLRPVVGNLNWRAPQWMTKTANGLHCAFNRSEQWVAKHPKGISAAIVLLMAAASATFYGYHWYLNRPQPIEPAPMVYQETSIRVSTPRTVNYQAQKPEAQPLSLNFMHSAAPITAMGQVVDQGISLTPAIEGEWKWATERTLVFTPKKAWPMGANYQITIDAEKLLAPQIKLNQTELNFTTPAFAYQLEKAEYYQDPQEAQKRSTIFHVQFNAPVDVASFEKQILLGLVEGKSKSEKKLNFSVVYDEKKLNAWIHSQPLMPMDKGGSVHLSINKGVNASVAATPTTQAQNKWVSVPNLYSLAVNSINATLVESDNNNGERALIIAISDAVKDKEIKNAVKAWLLPQHNFQAKESAKTSTDFYPWDMDDIDDNLLQQSTPLALTLNEAEQEYQPIFSFKFDAPSYRTLLIEVNNSLTSVGGYKMPEKIYQIVRVPDYPKTLRFMSQGSLLSMQGDKQISVAARNMTGMKLDIKRVIPSQLQHIVSFKSSEYSSAHFNRLSDEYFTEHFQYQTALNNDNPGEINYQGVDLSRYLANNPSARRGVFLLTLSAWDQEKRDNQQHSEEDYDEDQEWVGDSRFVVITDLGIITKQSQDRSRDVFVQSIHSGLPAADAKVSVVAKNGVVLLSQITDSKGHVHFPALDAFKNERQPVMFLVEKEGDVSFLPTRATYDRNLDFSRFDIDGEETPSDPRTLSSYLFSDRGVYRPGDRFNIGLITRTANWATALDGVPLRAEIRDPRDTLMSTLPITLDSSGFNELSYTTGENSPTGEWNVYLYLVGKNNETSMLLGHTTVNVKEFEPDRLKVQLQLTPERQQGWVKPQELQANINVQNLFGTPAQERRVTSRLILRPMYPSFAPFPDYLFYENRHNSDGFETELEEQTTDLQGMATIPLDLKSYADATYQLQLLSEAFEAGGGRSVAATARVLVSPYDSLVGVKADGDLSYINRDAVRKLNIIAVDPSLNKIALPDLSLSLIEQKYISVLTKQDSGVYKYQSRLKEQLVSEQPLKISPTGTDFTLVTQQPGDFILVVKDSQGQVLNRISYTVAGNANLTRSLDRNTELKLKLNQAEYLQGEEIEIAINAPYAGSGLITIEKDKVYSWQWFHSDTTSSVQRIRIPPAMEGNGYINVQFVRDVNSDEIFMSPLSYGVMPFKISTKARQAAIELASPSVIKPGEVLPIKVTTDSPQRVVVFAVDEGILQVARYRLKDPLDYFFRKRELSVQSAQILDLILPEFSKLMALTSAPGGDSGEGLDLHLNPFKRKQDKPVAYWSGITEVNGETTFNYPIPDYFNGKIRVMAISATPDRIGKVQTSTTVRDNFILTPNVPAMVAPGDEFDVTVGVSNNLQGLKGKAVDITVRLTPPPQLEVVGEAQHSLSLAEKRETLVSFRLRARSALGDAPLVFDASYGSQSSRRTVSTSVRPAMPFRTQSVMGRMEGNKHTVTNLRQMFDNYAQRQATASHSPLVLTQGLARYLADYPYYSSEQIVSRSIPLIMQSKHPEMDSALNQNEVRDQLKNMLRILSSRQNSTGAIGLWHASPTPDPFVTPYVVQFLLEAKSAGYSLPNDILEGANNALRLLAARPYDDLYSLRLRAFAVYLLTLQGEITTNTLASVQSTLQQLYPDSWQTDLSAIYLASSYRLLKMDDEANKLLQPTWKQLGKAYSKAWWTQNYFDPLVQDATRLYLITRHFPEKVSSIPPQALENMVLALRDEHYTTYSSAMSILALESYTSQVAAQQDTPETLQIIEISKSKGIDPNVISTLNGLFVQGDFTGEAKAIQFNNYASAPAWYVVNQSGYDLQPPKDAISNGLEISRSYTDEQGKPVTQVTLGQKVNVHLKIRANAKQGQNNLAIVDLLPGGFEVIQQTAPEPEFYDNQDEETGSGWQSPLMVSGSSWYPDYSDIREDRVIIYGSASTDVKEFIYQIKSTNTGRFVVPPAYGEAMYDRNVQALSVGKGHILVVPPEAK
>NZ_CP009712.1|WP_138921619.1|1618773_1621086_+|penicillin-binding-protein-1C
MALFLLALLVIGFRLWPHPPLSQGLPLSTAYYDRHGTLLRLSLANDDRYRLWTPLEEISPLVIQGIQLHEDRGFYYHPGVNPISLLRGFWQSYVQGGRQQGGSTLTMQLARMHWHLNTRSPTGKLRQIARAIQLELSYSKHDILEAYLNYAPYGRNIESIAAASLIYFDKKPQQLTLPEALTLAVLPQSPSYRIDPTTGVLGSALTQARNRLFVRWQQTYPTDSSQMALFQLPLSLRQPEKMPYIAPHFIEQIRRQNQQLANTQSQVDTTLDANLQQLVEKQVEAFIRRNNSRGIHNAAVLLLDTRDMGVRALVGSANYYDREIQGQVNGTNAKRSPGSTLKPFIYALGLEQGILHPMTILKDVPSSFGAYAPENFDHRFLGPVTATDALNFSRNIPAVYVASRLRQPTLYQFLRLSGVTNMASENHYGLSLVLGGGEITLQELARLYAMLANRGTLHPIQMVQTDKTLPSIRLLSEAASFITLDMLRQHRRPGDTLAQSPTSLPVYWKTGTSWGFRDAWSAGIFGPYVLIVWEGNFAGKGNSAFVGADAAAPLFFNIIDSIQANYPALREPKHPWPPQLKRVAICLASGNLPTPWCQQQGKTWFIPGKSPIKVDTVYRPVVIDINSGQAACLPYDRSQTRTEVFEFWPSDLANVFAQAGLPKRQPPDRSHCKEGNTLASGNAPRITSPLRNTTYTLRQSQQGRDQIVFSATLDADSTTTYWFVDDIYLGSSTSKKSIDWHPTRSGQYRIRAIDDHGRADSRLIRVEKVD
>NZ_CP009712.1|WP_002209745.1|1621298_1621544_-|transcriptional-regulator
MDKQDWHPADILAGLKKRGTTMAALSRKSGLASSTLANTLLRPWPKGERLIAEVLELHPAEIWPSRYLKPKKSPAESVNPG
>NZ_CP009712.1|WP_011191916.1|1622216_1623074_+|hypothetical-protein
MKYDSVLKTFVDDDYRLEDHLDFKKQHADIRYQKLHKQLNEMSDENMHALLTIEEGEYFLKTLCNPNPHQSWKDAIFSCTDPTSVFFGSLVESLSVSRIVFEIRGFGVTATEYVGKNGSSYIKLSGYAGIRKYLDATRYLIDNPKILDIGIGTQSIENGIVRGARFCIVFSAAYRSVELLLKDEYGLADFFVNLTLDAAKLGVSIGVAWGAKALATGFMVAGGSVLAIAIGIFTIGVLASLILYWLDNEYKISETIIKNIKSHRVQNSPYHADQFFNAWGRLSRG
>NZ_CP009712.1|WP_032467032.1|1623066_1623468_+|DUF1240-domain-containing-protein
MVKINRPLVGAFAILLFFLSSWGCWFSLSGYLAFFKLSDVIIFSWKVGFVIFAVPLLFYFSYLAFFSAIKNKPAIMNNKLANALAILAILGSIISLFSSAYISYSLTEYSYKSCPRSSWMSPNEYVKDIKLCP
>NZ_CP009712.1|WP_002209748.1|1623699_1624101_+|DUF1240-domain-containing-protein
MVKINRPLFGAFAVFLLFLSCWVSWFSLNGYWDFFKLSDVIIFSWKVGVMIFGAPVLFYFSYLAFYCAIKNKPAKVNNKLANTFAMLAMLGVVISFFSSVYIGYSLTEYGYKLCSRSSWMSPNEYVKDIKLCP
>NZ_CP009712.1|WP_011191915.1|1624205_1624685_-|Hcp-family-type-VI-secretion-system-effector
MSNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVHFVKPIDKSSPLLGVAISENERIDVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHSIDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVY
>NZ_CP009712.1|WP_011191914.1|1624708_1624960_-|hypothetical-protein
MMKNNKNINKDEFSDKLAQQIKEMINNSQLDSVEILSVVMESIFSLFSETEGHLAEMKFIDSAGEDYRFILRLEVPPILERQH
>NZ_CP009712.1|WP_002209751.1|1624998_1625238_-|hypothetical-protein
MEKEKKTLFGHKTPAMMQLSEQLESSLHNSPLVPEEKLALIMKLCVLLFRENKTDAAEMKVSDGRILKLTLEKTSSVLH
>NZ_CP009712.1|WP_011191913.1|1626046_1627963_+|autotransporter-adhesin-YapC
MDKTLLAGAISLSLVTLPVQVLAFTPNVVGITVNDEVVIHGIQNVRDGGVINNGLVSDNAAITVTNGSSAGTANNTTVGDKGWLQITGALATGTIVNQGGLLDTKTAGTVIDSQINDGGHMTLGLNSQSKGYLNIAAGAELFVTNNDPYTSDVTTHNPALPANVMIENLNVAGLVEIGPSWKGTSIVPLPLSDVLGPVLVTRINNVTLQGGDINLMAYSAGGQFNRLEIENLSGQGNFAMTTQLASNTGDFITVSQQATGQFGITVQDSGKEPQSADNLALVHINRGDAQFRLLNTGGVVDLGVYQYGLYSQESNGSTDWYLATSTEELPGTTPNVTAPMLSSAAQGVLNMAAAPRHILNAELSTLRQRQGELKADAEGTVGVWARYLTDDSRLSDNKNIAFKNTLSGMEIGADKQLGLNRGNMLIGAFTSYSSSDVKSTHGANGDIRSYGGGLYLTYLDQSGFYVDTVLKANRFNNKMNTQETRGEYNQNALTTSVESGYQWPVYANLVLEPYGKVSYSRIGSADYTLSNGMVAEVAKADSVQGELGTVLAASYSINQMTIKPYIKLAITREFTKSNAVAINNIGFDNDFSGNVGKYGVGINATVANNTAIFAEVDYLNGSKIETPVTANIGFRLRF

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Crispr_ID: NZ_CP009712_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009712_4

2530548-2530646

Orphan

Consensus_repeat	Method
TTCTGTGTTTCGTACACAGCAAAAACCCCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009712_4

>merge|NZ_CP009712|4|2530548-2530646|CRISPRCasFinder
TTCTGTGTTTCGTACACAGCAAAAACCCCACGCCTTTGGCATGGGGTTATCAGTAAAACGCGTAATTTCTGTGTTTCGCACACAGCAAAAACCCCACGC

>NZ_CP009712|4|3|2530548-2530646|CRISPRCasFinder
TTCTGTGTTTCGTACACAGCAAAAACCCCACGC	CTTTGGCATGGGGTTATCAGTAAAACGCGTAAT
TTCTGTGTTTCGCACACAGCAAAAACCCCACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009712.1\|WP_002210685.1\|2543377_2544163_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009712.1\|WP_011191564.1\|2519442_2520759_-\|glutamate/aspartate:proton-symporter-GltP	unknown	unknown	gnl\|CDD\|183075
NZ_CP009712.1\|WP_011191563.1\|2521613_2523572_+\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_CP009712.1\|WP_011191559.1\|2536497_2538087_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP009712.1\|WP_072080736.1\|2525665_2526679_-\|hydrolase	unknown	unknown	gnl\|CDD\|223489
NZ_CP009712.1\|WP_011191558.1\|2538146_2539433_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_CP009712.1\|WP_002210689.1\|2540321_2540597_-\|DNA-binding-protein-HU-alpha	unknown	unknown	gnl\|CDD\|138142
NZ_CP009712.1\|WP_002230622.1\|2540785_2541376_-\|YjaG-family-protein	unknown	unknown	gnl\|CDD\|225610
NZ_CP009712.1\|WP_011191555.1\|2542191_2543259_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP009712.1\|WP_011191565.1\|2518632_2519265_+\|two-component-system-response-regulator	unknown	unknown	gnl\|CDD\|185267
NZ_CP009712.1\|WP_011191554.1\|2544255_2545038_-\|NAD(+)-diphosphatase	unknown	unknown	gnl\|CDD\|234699
NZ_CP009712.1\|WP_011191566.1\|2515800_2518620_+\|two-component-system-sensor-kinase	unknown	unknown	gnl\|CDD\|237951
NZ_CP009712.1\|WP_086025310.1\|2529176_2530276_-\|IS3-like-element-ISYpe1-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP009712.1\|WP_032466595.1\|2535820_2536006_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009712.1\|WP_001297096.1\|2528004_2528784_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NZ_CP009712.1\|WP_071838981.1\|2541421_2542162_-\|deoxyribonuclease-V	unknown	unknown	gnl\|CDD\|236937
NZ_CP009712.1\|WP_000255944.1\|2526982_2528005_+\|IS21-like-element-IS100-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP009712.1\|WP_011191562.1\|2523936_2525592_+\|cation/acetate-symporter-ActP	unknown	unknown	gnl\|CDD\|236495
NZ_CP009712.1\|WP_012303442.1\|2539618_2540272_-\|DUF1481-domain-containing-protein	unknown	unknown	gnl\|CDD\|369329
NZ_CP009712.1\|WP_002209030.1\|2523628_2523940_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704

Protein	Function_ID	Function_description	E-value
NZ_CP009712.1\|WP_011191564.1\|2519442_2520759_-\|glutamate/aspartate:proton-symporter-GltP	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	0
NZ_CP009712.1\|WP_011191563.1\|2521613_2523572_+\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_CP009712.1\|WP_011191559.1\|2536497_2538087_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP009712.1\|WP_072080736.1\|2525665_2526679_-\|hydrolase	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	1.01462e-12
NZ_CP009712.1\|WP_011191558.1\|2538146_2539433_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_CP009712.1\|WP_002210689.1\|2540321_2540597_-\|DNA-binding-protein-HU-alpha	gnl\|CDD\|138142	PRK10753, PRK10753, DNA-binding protein HU-alpha.	2.50851e-45
NZ_CP009712.1\|WP_002230622.1\|2540785_2541376_-\|YjaG-family-protein	gnl\|CDD\|225610	COG3068, COG3068, Uncharacterized protein conserved in bacteria [Function unknown].	2.9305e-125
NZ_CP009712.1\|WP_011191555.1\|2542191_2543259_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP009712.1\|WP_011191565.1\|2518632_2519265_+\|two-component-system-response-regulator	gnl\|CDD\|185267	PRK15369, PRK15369, two component system response regulator.	4.88575e-140
NZ_CP009712.1\|WP_011191554.1\|2544255_2545038_-\|NAD(+)-diphosphatase	gnl\|CDD\|234699	PRK00241, nudC, NAD(+) diphosphatase.	9.7923e-170
NZ_CP009712.1\|WP_011191566.1\|2515800_2518620_+\|two-component-system-sensor-kinase	gnl\|CDD\|237951	PRK15347, PRK15347, two component system sensor kinase.	0
NZ_CP009712.1\|WP_086025310.1\|2529176_2530276_-\|IS3-like-element-ISYpe1-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	9.29319e-29
NZ_CP009712.1\|WP_001297096.1\|2528004_2528784_+\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	5.26232e-178
NZ_CP009712.1\|WP_071838981.1\|2541421_2542162_-\|deoxyribonuclease-V	gnl\|CDD\|236937	PRK11617, PRK11617, deoxyribonuclease V.	1.00906e-160
NZ_CP009712.1\|WP_000255944.1\|2526982_2528005_+\|IS21-like-element-IS100-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.49492e-79
NZ_CP009712.1\|WP_011191562.1\|2523936_2525592_+\|cation/acetate-symporter-ActP	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP009712.1\|WP_012303442.1\|2539618_2540272_-\|DUF1481-domain-containing-protein	gnl\|CDD\|369329	pfam07356, DUF1481, Protein of unknown function (DUF1481). This family consists of several hypothetical bacterial proteins of around 230 residues in length. Members of this family are often referred to as YjaH and are found in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.	5.62648e-99
NZ_CP009712.1\|WP_002209030.1\|2523628_2523940_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	1.68243e-49

>NZ_CP009712.1|WP_086025310.1|2529176_2530276_-|IS3-like-element-ISYpe1-family-transposase
MKKTRYTEEQIAFALKQAETGTRVEEVCRKMGISEATFYNWKKKFGGMGVTELRRLRQLEDENQRLKRLVADLSLDKEMLQDVIRKKFLRPLQKRDAVEYLLAAYRIGVRRGCRLMMQSRTVYNYRSHRDDRAITQRIREIAETRIRYGCPRIHILLRREGWLVNHKKTHRIYCLEGLNLRSKRPRRHVTAKHRHARPEVTALEQCWSMDFVADNLFNGRRVRALTIVDNFSRECLAIEVGQGLRGDDVVAVMDRLKHSLGRIPQRLQTDNGSEFISKSMDRWAYENRVTMDCSRPGKPTDNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQWRQEYNHFRPYSSLNNLTPAEFARSHQKGPDL
>NZ_CP009712.1|WP_001297096.1|2528004_2528784_+|AAA-family-ATPase
MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE
>NZ_CP009712.1|WP_000255944.1|2526982_2528005_+|IS21-like-element-IS100-family-transposase
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA
>NZ_CP009712.1|WP_072080736.1|2525665_2526679_-|hydrolase
MNYQSSWLAGKYTDFALWRSDTRKILRQALLTPNSTITFSAEKIEQQDRGSYIAEKIALNITDESRVLGLLLTPKTKGPHPAIVLLHDHGSKFDIGKEKMIRPWGDSAKLASAQAWSDKFFSGKFVGDELAKRGYVVFSIDSIGWGDRGPMSYERQQALASNFFNLGRSLAGTMAYEDMRTVDFMTTLPSVDRKRIGVLGFSMGAYRAWQLAALSDQVAATAAISWFGNYKGLMTPDNNVLRGQSSFYMLHPGIANKLDFPDIASLAAPRPMLLFNGGKDKLFPAQAVEQAYDKVHAIWRSQNAEPRLVTRSWPTLGHVFYQEQQDVVFLWLDRWLK
>NZ_CP009712.1|WP_011191562.1|2523936_2525592_+|cation/acetate-symporter-ActP
MKIRHWSALSLFVLPALAQAEALTGEVHRQPLNIQAIVMFLLFVGGTLYITYWASKRTRSRQDYYTAGGRITGFQNGLAIAGDYMSAASFLGISALVYASGYDGLIYSIGFLIGWPIILFLIAERLRNLGRYTFADVASYRLQQRPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVMLLSGATFMAIMVMKSVNFNFNTLFSEAVKVHPKGLSIMSPGGLVSDPISALSLGLALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVGPNQTFKDAAGALLGGNNMAAVHLANAVGGSFFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVIKKGKANERDELRVSKITVIILGIVAIGLGILFEKQNIAFMVGLAFSIAASCNFPIIIISMYWDKLTTRGAMIGGWLGLSTAVILMILGPTIWVTILGHEKPIYPYEYPALFSMIAAFVGTWFFSITDNSETGKQERLLFKSQFVRSQTGLGASKGGAH
>NZ_CP009712.1|WP_002209030.1|2523628_2523940_+|DUF485-domain-containing-protein
MNDSIYQEIEDNPRFQELVKKRSRFAWLLSLITLTMYVAFIFLIAFEPQWLGTPIYTGSSVTRGIPVGVGLIVTSFILTGIYVIRANGEFDRLTAEIIREVKQ
>NZ_CP009712.1|WP_011191563.1|2521613_2523572_+|acetate--CoA-ligase
MSQIHKHPIPAAIAEHALITPEKYQHYYQQSVQNPDEFWGEQGKIIDWIKPYKTVKNTSFDPGHVSIRWFEDGTLNLAANCLDRHLAERGDQTAIIWEGDDPNQSKTVTYKQLHHDVCQFANVLKSLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPDAVAGRIIDSHSKLVITADEGIRAGRAIPLKKNVDEALKNPAITSIKNVVVFQRTGNASYWEDGRDVWWHDLIKEASADCPPEEMNAEDPLFILYTSGSTGKPKGVVHTTGGYLVYAALTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGAITLMFEGVPNYPGVNRLSQVVDKHKVNILYTAPTAIRALMAEGDKAIEGTKRDSLRIMGSVGEPINPEAWEWYYNKIGNSKCPIVDTWWQTETGGFMITPLPGATELKAGSATRPFFGVQPALVDNLGNPQEGVAEGNLVITDSWPGQARTLFGDHDRFEQTYFSTFKGMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGVPHNIKGQAIYAYITLNHGEEPTPELYTEVRNWVRKEIGPLATPDILHWTDSLPKTRSGKIMRRILRKIATGDTSNLGDTSTLADPSVVEKLLEEKQSMQTPS
>NZ_CP009712.1|WP_011191564.1|2519442_2520759_-|glutamate/aspartate:proton-symporter-GltP
MKSIKISLAWQILIALVLGILVGAVLHNQIESREWLVSNILSPAGDIFIRLIKMIVVPIVISTLIVGIAGVGDAKKLGRIGLKTIIYFEVITTIAIIIGITLANVFQPGVGIDMSALTVVDISQYEKTTEQVQSGSHSLVSTILSLIPANVFASMAKGDMLPIIFFSVLFGLGLSSLPKETKEPLLNVFKAVSESMFKVTHMIMRYAPIGVFGLISVTVANFGFASLIPLAKLVILVYAAILFFALVILGTVARLCKLRIWILIRILKDELILAYSTASSETVLPRIIEKMEAYGAPKAITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIELSIGQEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMARTALNVVGNALAVLVIAKWENQFDDKKAKAYEKALFAAEQTPANQS
>NZ_CP009712.1|WP_011191565.1|2518632_2519265_+|two-component-system-response-regulator
MNTKLLIVDDHELIIHGIKNMLAAYPRYLIVGQADNGLEVYNLCRQTEPDMVILDLGLPGMDGLDVIIQLLRRWPAMKILTLTARNEEHYASRTFNSGALGYVLKKSPQQILMAAIQTVAIGKRYIDPALDASMVIKLTQGPANTPTVLTPRERQILKLITEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGLNV
>NZ_CP009712.1|WP_011191566.1|2515800_2518620_+|two-component-system-sensor-kinase
MGKASSLVTRLTLLLGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLISRRESLQSTSPLPEISIKHYDSCYIPFNLDSCNINQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRIGFAWEALKPALYQLPFALVILLLLTSVLSLLLRYYLAIPLWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKERTLALAKAKRAAEQANRRKSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCSLSLLAIINNLLDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRYFVDNALCYLPGRLYANLKQYLQGAETEVLKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTLADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGVDLSPQLSEPQPLLDLADSALSLKLYQSLQVLIQQAKDAIENLPVLSHTLHTIKGCAGQAGLIELQDAVIQLEHALDTHETLTQQDIIQLDEIIHVLLQPPTTCESTFIISQGQSLMVK
>NZ_CP009712.1|WP_032466595.1|2535820_2536006_+|hypothetical-protein
MFDLLTFTCVKAAVLKDYFLQIGILTEVTMFTALVTLQDLILFLPAETGVDIVLRVPTQIV
>NZ_CP009712.1|WP_011191559.1|2536497_2538087_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MQQRRPIRRALLSVSDKAGIIEFAQALSQRGIELLSTGGTARLLADAGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDGIMAQHGIQPIDIVVVNLYPFAQTVARPDCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYPAIITELDNNDGSLTYPTRFNLAIKAFEHTAAYDSMIANYFGTLVPPYHGDTEQPSGHFPRTLNLNYIKKQDMRYGENSHQQAAFYIEEDVKEASVATAQQLQGKALSYNNIADTDAALECVKEFSEPACVIVKHANPCGVAIGDSILAAYERAYQTDPTSAFGGIIAFNRELDAATANAIISRQFVEVIIAPTVSSDALALLAAKQNVRVLTCGQWQARSAGLDFKRVNGGLLVQERDLGMVTAADLRVVSKRQPTEQELRDALFCWKVAKFVKSNAIVYARDNMTIGIGAGQMSRVYSAKIAGIKAADEGLEVAGSAMASDAFFPFRDGIDAAAAVGITCVIQPGGSIRDDEVIAAADEHGIAMIFTDMRHFRH
>NZ_CP009712.1|WP_011191558.1|2538146_2539433_+|phosphoribosylamine--glycine-ligase
MNILIIGNGGREHALGWKAAQSPLADKIYVAPGNAGTALEPTLENVDIAATDIAGLLAFAQSHDIGLTIVGPEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTLEEAETAVNDMLAGNAFGDAGHRIVVEEFLDGEEASFIVMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADGQPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGTQGKLNEKTSDWDERPSLGVVLAAGGYPADYRQGDVIHGLPQQEVKDGKVFHAGTKLNGNHEVVTNGGRVLCVTALGETVAQAQQYAYQLAEGIQWEGVFCRKDIGYRAIARGK
>NZ_CP009712.1|WP_012303442.1|2539618_2540272_-|DUF1481-domain-containing-protein
MRRVLITFGLTLGLSACSSLSDPPQFSASGYIADSGVVRLWRQDNAQQQPQVLMSVYSPYFGGNTRVTFYEYQNGILREIRRNDLGATPQSVQLRFDEQGQVSFMQRQLASRRESLSADDIAVYQLEAKRILELSRVLRAGDVRLIQGRWQDGMLTTCAGKTLRLNLDDNSQAWLTTRGEKNTQPLGVAWLDSSEGQQLLLVANQDFCRWEPQAGSL
>NZ_CP009712.1|WP_002210689.1|2540321_2540597_-|DNA-binding-protein-HU-alpha
MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDPVQLVGFGTFKVNHRNERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVKS
>NZ_CP009712.1|WP_002230622.1|2540785_2541376_-|YjaG-family-protein
MLRNPIHLRLEKLESWQHLTFMACLCERMYPNYQQFCLETGFGDPAVYRRILDLIWETLVVKDAKVNFDSQLEKLEEAIPSSDDYAIYGVYPAIDACIALSEAIHSRLSGETLEHAIAISEASIRTVAMLEMTLAGKEMTDEELKILPAIEEEWDIQWEIFRLLADCEERDLDLIKGLRSDLREAAVSNIGINLTQ
>NZ_CP009712.1|WP_071838981.1|2541421_2542162_-|deoxyribonuclease-V
MVKTKSRVETKSMFDTKALQAEQRQRASEISLHDGIDNQFVRFIAGADVGFEQHGEITRAAIAILRYPSLALVEYQVARVATSLPYIPGLLSFREYPALLAAWAQLQQRPDLILVDGQGIAHPRRLGVASHFGLLVDVPTIGVAKSRLCGDFLPLHQDVGAVQPLFDNDEQLGWVWRSKIRCNPLFISPGHRVSVGSALAWVQRCMAGYRLPEPTRWADAIASNRPQFQRWLRKNPDFLGKRRDMI
>NZ_CP009712.1|WP_011191555.1|2542191_2543259_-|uroporphyrinogen-decarboxylase
MNELKNDRYLRALLRQPVDMTPVWMMRQAGRYLPEYKATRAIAGDFMSLCKNAELACEVTMQPLRRYPLDAAILFSDILTIPDAMGLGLYFETGEGPRFQSPITCRADVEKLPIPDPEQELGYVMNAVRTIRRELAGSVPLIGFSGSPWTLATYMVEGGSSKAFTKLKKMMYAEPQTLHLLLDKLADSVILYLNAQIKAGAQSVMIFDTWGGVLTGRDYHEFSLNYMHKIVDGLIRENEGRRVPVTLFTKGGGQWLEAMAATGCDALGLDWTTDIADARRRVGDKVALQGNMDPSVLYAPPARIEQEVSTILASFGQGEGHVFNLGHGIHQDVPPAHAGAFVNAVHALSRPYHQK
>NZ_CP009712.1|WP_002210685.1|2543377_2544163_-|hypothetical-protein
MRPIITQTVQPVTSMYPSLPKAFIQDKVMLSLHNKAALDSTIKGDAVRALLLHAYVDIKGNEVERRTTAVGIQKLYEEVLQELLYQDPKCISVMISHTANPPTPLSIASPERVMQMMHQNIRQDIASQKTITDRTQTLHNLLSYKNQFQYKAIYDQPRLKPEENYNFKMVNDVHENLHSIQTDSCCKAGALTGATYFLQDSPGEIHVFGIRITQANEESGKVELFQGLKSDVQTNNKLDSLYLLLRGNSHQSPDDISSSVG
>NZ_CP009712.1|WP_011191554.1|2544255_2545038_-|NAD(+)-diphosphatase
MELQLTGKESGWWIVSHENKLWLPKGELPQGNAANWSLQGATARQIGEWQGQPVWLIRQMMPSGMGSVRQLLDVDRGLFQLAGRGVQLAEFYRSHRFCGYCGHEMHASRTEWASLCNHCRERYYPQIAPCVIVAIRRGDEILLAQHVRHRGGINTVLAGFVEVGETLEQAVSREVLEESNIHIKNLRYVTSQPWPFPHSLMMAFMADYDSGELCHDPKELLNAGWYRYDQLPLLPPPGTVARRLIEDTVVLCREHSDLSQ

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Crispr_ID: NZ_CP009712_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009712_5

2773166-2773277

Orphan

Consensus_repeat	Method
AAAGCACATTTGAGCAGCGAGTGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009712_5

>merge|NZ_CP009712|5|2773166-2773277|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAGCCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCCAAAGCACATTTGAGCAGCCGAGTGAA

>NZ_CP009712|5|4|2773166-2773277|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAG	CCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCC
AAAGCACATTTGAGCAGCCGAGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009712.1\|WP_011191467.1\|2770109_2772746_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP009712.1\|WP_002208941.1\|2784443_2785289_+\|cell-division-protein-FtsN	unknown	unknown	gnl\|CDD\|237191
NZ_CP009712.1\|WP_011191472.1\|2758911_2760720_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP009712.1\|WP_011191466.1\|2777129_2778290_-\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|169194
NZ_CP009712.1\|WP_002223919.1\|2768572_2769736_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346
NZ_CP009712.1\|WP_011191468.1\|2767317_2768322_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP009712.1\|WP_011191469.1\|2764821_2766195_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179883
NZ_CP009712.1\|WP_002208942.1\|2785388_2785913_+\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NZ_CP009712.1\|WP_011191465.1\|2780798_2782997_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP009712.1\|WP_002208936.1\|2779333_2779789_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227027
NZ_CP009712.1\|WP_011191474.1\|2756639_2757443_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_CP009712.1\|WP_004392248.1\|2778667_2778985_+\|met-regulon-transcriptional-regulator-MetJ	unknown	unknown	gnl\|CDD\|179982
NZ_CP009712.1\|WP_002216730.1\|2783349_2784378_+\|DNA-binding-transcriptional-regulator-CytR	unknown	unknown	gnl\|CDD\|182923
NZ_CP009712.1\|WP_011191471.1\|2760885_2761503_-\|heme-acquisition-hemophore-HasA	unknown	unknown	gnl\|CDD\|368907
NZ_CP009712.1\|WP_002209488.1\|2766361_2767135_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239782
NZ_CP009712.1\|WP_011191470.1\|2761730_2764223_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273807
NZ_CP009712.1\|WP_011191473.1\|2757507_2758836_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP009712.1\|WP_002216737.1\|2780330_2780546_-\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234576
NZ_CP009712.1\|WP_002208933.1\|2773574_2774459_-\|methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|181852
NZ_CP009712.1\|WP_002208934.1\|2774691_2777127_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II	unknown	unknown	gnl\|CDD\|236530

Protein	Function_ID	Function_description	E-value
NZ_CP009712.1\|WP_011191467.1\|2770109_2772746_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP009712.1\|WP_002208941.1\|2784443_2785289_+\|cell-division-protein-FtsN	gnl\|CDD\|237191	PRK12757, PRK12757, cell division protein FtsN; Provisional.	2.3223e-148
NZ_CP009712.1\|WP_011191472.1\|2758911_2760720_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP009712.1\|WP_011191466.1\|2777129_2778290_-\|cystathionine-gamma-synthase	gnl\|CDD\|169194	PRK08045, PRK08045, cystathionine gamma-synthase; Provisional.	0
NZ_CP009712.1\|WP_002223919.1\|2768572_2769736_+\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0
NZ_CP009712.1\|WP_011191468.1\|2767317_2768322_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NZ_CP009712.1\|WP_011191469.1\|2764821_2766195_-\|argininosuccinate-lyase	gnl\|CDD\|179883	PRK04833, PRK04833, argininosuccinate lyase; Provisional.	0
NZ_CP009712.1\|WP_002208942.1\|2785388_2785913_+\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	1.88144e-131
NZ_CP009712.1\|WP_011191465.1\|2780798_2782997_+\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP009712.1\|WP_002208936.1\|2779333_2779789_+\|hypothetical-protein	gnl\|CDD\|227027	COG4682, COG4682, Predicted membrane protein [Function unknown].	3.96467e-66
NZ_CP009712.1\|WP_011191474.1\|2756639_2757443_-\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	8.41417e-38
NZ_CP009712.1\|WP_004392248.1\|2778667_2778985_+\|met-regulon-transcriptional-regulator-MetJ	gnl\|CDD\|179982	PRK05264, PRK05264, met regulon transcriptional regulator MetJ.	1.36793e-81
NZ_CP009712.1\|WP_002216730.1\|2783349_2784378_+\|DNA-binding-transcriptional-regulator-CytR	gnl\|CDD\|182923	PRK11041, PRK11041, DNA-binding transcriptional regulator CytR; Provisional.	0
NZ_CP009712.1\|WP_011191471.1\|2760885_2761503_-\|heme-acquisition-hemophore-HasA	gnl\|CDD\|368907	pfam06438, HasA, Heme-binding protein A (HasA). Free iron is limited in vertebrate hosts, thus an alternative to siderophores has been developed by pathogenic bacteria to access host iron bound in protein complexes. HasA is a secreted hemophore that has the ability to obtain iron from hemoglobin. Once bound to HasA, the heme is shuttled to the receptor HasR, which releases the heme into the bacterium.	1.23706e-101
NZ_CP009712.1\|WP_002209488.1\|2766361_2767135_-\|acetylglutamate-kinase	gnl\|CDD\|239782	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).	2.92616e-136
NZ_CP009712.1\|WP_011191470.1\|2761730_2764223_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.25236e-131
NZ_CP009712.1\|WP_011191473.1\|2757507_2758836_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	4.12924e-105
NZ_CP009712.1\|WP_002216737.1\|2780330_2780546_-\|50S-ribosomal-protein-L31	gnl\|CDD\|234576	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed.	4.16591e-39
NZ_CP009712.1\|WP_002208933.1\|2773574_2774459_-\|methylenetetrahydrofolate-reductase	gnl\|CDD\|181852	PRK09432, metF, methylenetetrahydrofolate reductase.	0
NZ_CP009712.1\|WP_002208934.1\|2774691_2777127_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II	gnl\|CDD\|236530	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional.	0

>NZ_CP009712.1|WP_011191467.1|2770109_2772746_+|phosphoenolpyruvate-carboxylase
MNEQYSAMRSNVSMLGTLLGDTIKEALGEHILDRVETIRKLSKSSRAGNEASRQELLTTLQNLSNDELLPVARAFSQFLNLTNTAEQYHSISPHGEAASNPEALAQLFTRLKDKKLSDQDMRSAVDDLSIELVLTAHPTEITRRTLIHKLVEVNTCLSQLDHNDLADYERNKIMRRLRQLVAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWEGVPAFLREFNEQLENSLDYRLPVEAVPIRFTSWMGGDRDGNPNVTAEITRHVLLLSRWKATDLFLRDIQVLVSELSMSECTPELRELAGGEEVLEPYRQLMKNVRTQLTNTQAYLEARLKGERVLPPHDLLVSNDQLWEPLYACYQSLKACGMEIIANGQLLDTLRRVRCFGVPLVRIDVRQESTRHTDAIAELTRYLGLGDYESWSESDKQAFLVRELNSKRPLVPLKWEPSAETQEVLETCRVIAEAPQGSIAAYVISMAKVPSDVLAVHLLLKEAGCPFTLPVAPLFETLDDLNNADDVMTQLLGIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYAGAILEANLLPPPEPKKEWIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKRDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHLMADLPWIAESIALRNVYTDPLNVLQAELLHRSRQQEHPDACVEQALMVTIAGVAAGMRNTG
>NZ_CP009712.1|WP_002223919.1|2768572_2769736_+|acetylornithine-deacetylase
MKLPPFIELYRALIATPSISAADSALDQSNEALINLLAGWFADLGFRVEIQPVPDTRHKFNLLASIGENENGEGHGGLLLAGHTDTVPYDEGRWTRDPFTLTEHDHKLYGLGTADMKGFFAFILDAVRDIDASKLTKPLYILATADEETTMAGARYFAANTQLRPDFAIIGEPTSLQPVRAHKGHISNAIRITGQSGHSSDPARGVNAIDLMHESITQLMALRTTLQERYHNPAFTIPYPTMNFGHINGGDAANRICACCELHMDIRPLPGLTLSDLNELMTEALEPVSQRWPGRLSIDELHPPIPGYECPTDHHMVGVIEKLLGERTAVVNYCTEAPFIQQVCPTLVLGPGSINQAHQPDEFIDMAFIEPTRELIGQLVDHFCQQK
>NZ_CP009712.1|WP_011191468.1|2767317_2768322_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MLNTLIVGASGYAGAELTAYLNRHPHMNITGLAVSAQSADAGKLLSELHPQLKGILDLPLQPLVDVAQAAKGIDVVFLATAHEVSHDLAPQFLAAGCVVFDLSGAFRVRDAAFYSQYYGFEHQHPDWLDKAVYGLAEWQSEDIKQAQLIAVPGCYPTASQLALKPLVDGQLLNDAQWPVINAVSGVSGAGRKASMGNSFCEVSLQPYGLFTHRHQPEIVAHLGTPVIFTPHLGNFARGILATITCRLKAGVTAQNIADAYHHAYQNKPLVRLYQQGVPALKAVVGLPFCDIGFSVQGEHLIIVATEDNLLKGAAAQAVQCMNIRFGFPETQSLL
>NZ_CP009712.1|WP_002209488.1|2766361_2767135_-|acetylglutamate-kinase
MNPLVIKLGGVLLDSEEALERLFTALVTYREKHERPLVIMHGGGCLVDELMKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKHQINAVGLCLADGNTVTVTLLDAELGHVGKAQPGSAALVQTLLAAGYMPIISSIGITVEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAQKAEQLIAQGIITDGMVVKVNAALDAARSLGRPVDIASWRHSEQLPALFNGVPIGTRISV
>NZ_CP009712.1|WP_011191469.1|2764821_2766195_-|argininosuccinate-lyase
MALWGGRFSQAADQRFKQFNDSLRFDYRLAEQDIIGSVAWSKALVTVGVLNADEQQQLEQALSVLLEEVQANPHAILASDAEDIHSWVETKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKFQITELQTAVQQLQQALVMTAEANQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLSRDESRLQDTLKRLDVSPLGCGALAGTAYAIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASIGMVHLSRFAEDLIFFNSGEAAFVDLSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMTMTLKGLPLAYNKDMQEDKEGLFDALNTWLDCLHMAALVLDGIQVKRPRCKEAAEQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKALEALALSDLQQFSSVIGDDVYPILALQSCLDKRVAKGGVSPQQVASAIAEAKARLF
>NZ_CP009712.1|WP_011191470.1|2761730_2764223_-|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MDNIIRDKKTIISVNKITTCILFALVTQSYSGQLAANTATIPTNNNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
>NZ_CP009712.1|WP_011191471.1|2760885_2761503_-|heme-acquisition-hemophore-HasA
MSTTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSTLFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGGPSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKAKGINVDTAFKDLSIASQYPDSGYMSDAPMVDTVGVMDSNDMLLAA
>NZ_CP009712.1|WP_011191472.1|2758911_2760720_-|type-I-secretion-system-permease/ATPase
MESCKTPGASSVPPTILSVLAGNKKILWGIGLFTAVINLLMLAPAIYMLQVYDRVLASANTMTLLMLTVLVLGVFVFIGLLEWVRSAVVIRLGTQIDMQLNQPVFNAAFAANLKGHNTPAAQALNDLTVLRQFATGNALFAFFDAPWFPLYLLVIFLLHPWLGMLAAAGAGILVVLAWLNQWICKKPLHDASIITSHATQQANANLRNADVIEAMGMLKALRERWLMQHANFLYQQNLASDKSSRVTAVAKSSRQALQSMMLGLGALLVIYNEITAGVMIAGSILIGRVLGPIDQLIAVWKQWSHARLAYQRLSQLLAQHPSSPTGMVLPAPQGKLNVTQLMACKPGTHIPVLHSINFELQPGDVLGILGPSGSGKSTLAKLLVASQPAFSGTVRLDSADLSRWDKTQLGEFIGYLPQNIQLFRGTVAENIARFGAIDTAKVVAAAQLADVHDLILHLPQGYDTPLGDDGEGLSGGQRQRIALARAMYGIPRLIVLDEPNASLDKEGEQALLASIIQLKQQGCTIVMITHKPELLSGSDYLLFLKNGQMDLFDRTQAVLQNIQGKDKPAVQPEAKIRNSRSGWSNGVSYGIGPARTTSSPKP
>NZ_CP009712.1|WP_011191473.1|2757507_2758836_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MLPESACYSVANANRQPPLQINSGRYLNIGGGLVVIGFIGFLLWAGLAPLDKGVAVTGLLVVAENRKVIQPLQGGRIQQLHVTEGDEIVSGQLLVTLDDTAIRNQRDNLQHQYLSALAQEARLTAEQNDLDVITFPQALLEHATQPAVERNIILQQQLLHHRRQAHLSEIARLSTQLTRHQARLDGLQAMRSNHQRQSNLFQQQLDSVQLLAKDGYIAKNKLLEMESQLTSLQARVEQGTSDIAEAHKLIDETEQHVLQRREQYQSENSEQLAKAQQNTQELVQRLNIAEYELSHTRIFAPVSGSVIALAQHTVGGVVSSGQALMEIVPIGQPLFVEAQLPVELIDKVAVGLPVDLNFSAFNQSNTPRLQGSVWRIGADRIQPPPTSPPYYPLTVAIDLDPTELAIRPGMAVDVFIRTGERSLLSYLFKPFTDRLHLALAEE
>NZ_CP009712.1|WP_011191474.1|2756639_2757443_-|energy-transducer-TonB
MNRLQQSSEKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVEQRINQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAVNSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSNSSGTSALDREALAIIKRAQPLPKPPAELLSQGQITLSLPVDFNLKRK
>NZ_CP009712.1|WP_002208933.1|2773574_2774459_-|methylenetetrahydrofolate-reductase
MSFFHANQREALNQSLSELQGQINVSFEFFPPRTSEMEDTLWSSIDRLSTLKPKFVSVTYGANSGERDRTHSIIKGIKERTGLEAAPHLTCIDASPTQLRDIAIDYWNSGIRHIVALRGDLPPNSGKPEMYACDLVGLLKDVGDFDISVAAYPEIHPEAKSAQADLINLKRKIDAGANRAITQFFFDVESYLRFRDRCVATGIDVEIVPGILPVSNFKQLQRFATMTNVRVPNWMTSIFDGLDNDPETRKMVGASVAMDMVKILSREGVKDFHFYTLNRAELSYAICHTLGVRP
>NZ_CP009712.1|WP_002208934.1|2774691_2777127_-|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II
MNATAVAAAATGRQLHKFGGSSLADVKCYLRVANIMANYSHPGDLMVVSAAGSTTNQLISWLKLSQNDRLSAHQVQQSLRRYQHDLINGLLPPEMAEPLISEFIHDLERLAGLLDNKIDDVIYAEVVGHGEIWSARLMSALLNKLDMDAVWLDARRFLRAERAAQPQIDESRSYPLLQQLMAQHPHQRLVVTGFISRNEAGETVLLGRNGSDYSATQVGALAGAERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHTRTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLASGLGAKIVTSHDDVCLIELQIASHHDFSLAQKEIDLLLKRAQIKPLATGIHPDRNLLQLCYTSEVVNSALRVLEDAALPGKLSLREGLALVALVGAGVSKNPLHSHRFYQQLKDQPVEFVWQAEDGISMVAVLRLGPTEHLIQGLHQSLFRAEKRIGLMLFGKGNIGARWLELFAREQKSLSARSGFEFVLAGVVDSRRSLLSYDGLDASRTLAFYNDEAKEQDEESLFLWMRAHPFDDLVVLDVTASPSLAEQYLDFASYGFHVISANKLAGASSSNNYRQIRDAFAKTGRHWLYNATVGAGLPVNHTVRDLRDSGDSILAISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRVDLSGQDVMRKLVILAREAGYDIEPNQVRVESLVPAGAESGSVDQFFENGEALNQQMIQRLEAAKEMGLVLRYVARFDANGKARVGVEAVRTDHPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDLNRLSQLL
>NZ_CP009712.1|WP_011191466.1|2777129_2778290_-|cystathionine-gamma-synthase
MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFIDFNQPRTHDYSRRGNPTRDVVQRALAELEGGAGAVMTSSGMSAIHLVCTTFLQPGDLLVAPHDCYGGSYRLFDSLSKRGAYRVLFVDQGDEAALNRALAEKPKLVLIETPSNPLLRVVDIAAICQAARAAGALTVCDNTFLSPALQQPLSLGADLVVHSCTKYLNGHSDVVAGAVIAKDPELVVELAWWANNIGVTGAAFDSYLLLRGLRTLSPRMAQQQRNADDIVRYLQQQPLVKKLYHPSLPQHPGHEIACRQQSGFGAMLSFELDGDEQVMRRFLSALELFTLAESLGGVESLISHAATMTHAGMAAEARIAAGITDSLLRISVGIEDSEDLIADLDHAFQLAVTR
>NZ_CP009712.1|WP_004392248.1|2778667_2778985_+|met-regulon-transcriptional-regulator-MetJ
MAEWNGEYVSPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPNDEDLRKERSDEIPEAAKILMRELGVDPDTWEY
>NZ_CP009712.1|WP_002208936.1|2779333_2779789_+|hypothetical-protein
MNPNYAKPSAAFTAASWSALLGGFVIFLIGLWNADMQLNERGYYFAVLILGLFSAVSLQKTVRDKLEGLAITSIYYGLCWVAFIVAVLLLCIGLWNATLALSEKGFYGVTFFMTLFGAIAVQKNTRDSAMSSDTESASLFKKVRDQLKAED
>NZ_CP009712.1|WP_002216737.1|2780330_2780546_-|50S-ribosomal-protein-L31
MKQGIHPKYEQVTASCSCGNVIKINSTVGHDLNLDVCGECHPFYTGKQRDVASGGRVDRFNKRFSVPGAKK
>NZ_CP009712.1|WP_011191465.1|2780798_2782997_+|primosomal-protein-N'
MSVVQVALPVPLARTFDYRLDSAMACPVVGARVSVPFGKRKAIGIVVGLSDTSTFPLEQLKTIDAILDNHSLFPPSLWRILCWATEYYHYPIGEVLFHALPILLRQGRPAQSAPLWQWFVTEQGRATPPESLKRAPKQQQALAALLQKPVYRHQVNEMALTESALQALRSKGLIDLRAQEATTTDWRHSFSVLGERLRLNTEQATAVGAIRSEDNQFAAWLLAGVTGSGKTEVYLSVLENILAQGRQALILVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSVWLRARSGEAAIVIGTRSALFTPFSRLGVIIIDEEHDSSYKQQEGWRYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLTKRAGSAKPAAQHLLDLKGLPLKVGLSQPLLKRMKTHLQAGNQVILFLNRRGYAPALLCHECGWIAECQRCDHYYTLHQNHRQLRCHHCDSQRPVPQQCPKCGSTHLVSVGVGTEQLENELAPLFPETPITRIDRDTTSRKGSLEQHLADVHQGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVILQTHHPEHPLLQILLQQGYDAFAKQALEERKSVFLPPYTSHIIVRSEDHDNQQSALFLQQLRNLLEASPLKDEALWIMGPVPALQAKRGGRFRWQLLLQHPSRQLLQRLIKTSQPLISTLPQARKVKWTIDVDPIDS
>NZ_CP009712.1|WP_002216730.1|2783349_2784378_+|DNA-binding-transcriptional-regulator-CytR
MENKKEFTMTTMKDVAEMAGVSTATVSRALMNPEKVSTVTRQKVEQAVLAVGYSPHALSRNIKRNESRTILVIVPDISDPFFADVIQGIEHAAAQQGYLILIGDCAQQTQQERTFVNLIITKQIDGMLLLGSNLPFDASKEEQRNLPPMVMANEFAPELELPTVHIDNLTAAYEAVNYLHELGHKRIACIAGPESLPLSHYRLQGYIQALRRNGITVDNDYIIRGDFSYEAGAQSFAALMELPHPPTAIFSHNDVMAVGAIWQAKQLGLRIPQDVSLVGFDDLKLSQFCDPPLTTVAQPRYQIGQQAMLLLLEQLQGHSVQSGSRLLDTELIIRESTAAPKH
>NZ_CP009712.1|WP_002208941.1|2784443_2785289_+|cell-division-protein-FtsN
MAQRDYVSRGRSGARRKSTSRKKRSAPIVSKTVMALAVALLVVFVGGLYFITHNKPGELPLLPNHDPRTGNGLPPKPEERWRYIKELENRQIGVPMPTEPSAGGEVNAKTELTNEQRQLLEQMQADMRQQPTQLSEVPYNQGMQQVPRSAVTIKPPATSVQPQPVTPPRQTTIPVQPQAPAPVRTPPAAPVTQAVTPPKVEKEKEKTQRWMVQCGSFKAVDQAESIRAQLAFAGIESRITSGGGWNRVVLGPYNSKAAADKALQRLQGAGQSGCIPLSVGG
>NZ_CP009712.1|WP_002208942.1|2785388_2785913_+|ATP-dependent-protease-subunit-HslV
MTTIVSVRRDGHVVIGGDGQVTLGNTVMKGNAKKVRRLYNNKVIAGFAGGTADAFTLFELFERKLEMHQGHLTKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPEDDLIAIGSGGPYAQSAARALLENTELGARDIVEKSLSIAGDICIYTNRFQTIEELTY

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Crispr_ID: NZ_CP009712_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009712_6

2878962-2879052

Orphan

Consensus_repeat	Method
CACAGCAAAAACCCCACGCCTTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009712_6

>merge|NZ_CP009712|6|2878962-2879052|CRISPRCasFinder
CACAGCAAAAACCCCACGCCTTTGGCATGGGGTTATCAGTAAAACGCGTAATTTCTGTGTTTCGCACACAGCAAAAACCCCACGCTTTGGG

>NZ_CP009712|6|5|2878962-2879052|CRISPRCasFinder
CACAGCAAAAACCCCACGCCTTTGG	CATGGGGTTATCAGTAAAACGCGTAATTTCTGTGTTTCGCA
CACAGCAAAAACCCCACGCTTTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009712.1\|WP_002212255.1\|2892474_2893941_+\|ATPase-RavA-stimulator-ViaA	unknown	unknown	gnl\|CDD\|236815
NZ_CP009712.1\|WP_002213158.1\|2868295_2868862_-\|Der-GTPase-activating-protein-YihI	unknown	unknown	gnl\|CDD\|235370
NZ_CP009712.1\|WP_002217538.1\|2876711_2877242_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|236750
NZ_CP009712.1\|WP_002212256.1\|2894039_2895032_-\|aspartate--ammonia-ligase	unknown	unknown	gnl\|CDD\|225304
NZ_CP009712.1\|WP_002212250.1\|2885545_2886970_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182502
NZ_CP009712.1\|WP_002213160.1\|2869626_2870277_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP009712.1\|WP_011191441.1\|2887189_2888116_-\|ribokinase	unknown	unknown	gnl\|CDD\|236858
NZ_CP009712.1\|WP_002213171.1\|2876124_2876712_+\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP009712.1\|WP_032466595.1\|2884222_2884408_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009712.1\|WP_011191440.1\|2888790_2890659_-\|low-affinity-potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|182693
NZ_CP009712.1\|WP_002213168.1\|2873973_2874597_-\|thiol:disulfide-interchange-protein-DsbA	unknown	unknown	gnl\|CDD\|182863
NZ_CP009712.1\|WP_002213170.1\|2875701_2875971_-\|YihD-family-protein	unknown	unknown	gnl\|CDD\|225626
NZ_CP009712.1\|WP_011191443.1\|2870684_2873483_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP009712.1\|WP_002213155.1\|2866735_2868109_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
NZ_CP009712.1\|WP_002212252.1\|2888166_2888586_-\|D-ribose-pyranase	unknown	unknown	gnl\|CDD\|183318
NZ_CP009712.1\|WP_002213169.1\|2874624_2875611_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|236974
NZ_CP009712.1\|WP_011191439.1\|2890932_2892471_+\|ATPase-RavA	unknown	unknown	gnl\|CDD\|184118
NZ_CP009712.1\|WP_002215906.1\|2886966_2887137_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182448
NZ_CP009712.1\|WP_002215905.1\|2884776_2885466_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP009712.1\|WP_011191444.1\|2865269_2866682_+\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|182842

Protein	Function_ID	Function_description	E-value
NZ_CP009712.1\|WP_002212255.1\|2892474_2893941_+\|ATPase-RavA-stimulator-ViaA	gnl\|CDD\|236815	PRK10997, yieM, ATPase RavA stimulator ViaA.	0
NZ_CP009712.1\|WP_002213158.1\|2868295_2868862_-\|Der-GTPase-activating-protein-YihI	gnl\|CDD\|235370	PRK05244, PRK05244, Der GTPase-activating protein YihI.	1.58463e-65
NZ_CP009712.1\|WP_002217538.1\|2876711_2877242_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|236750	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional.	1.06099e-119
NZ_CP009712.1\|WP_002212256.1\|2894039_2895032_-\|aspartate--ammonia-ligase	gnl\|CDD\|225304	COG2502, AsnA, Asparagine synthetase A [Amino acid transport and metabolism].	0
NZ_CP009712.1\|WP_002212250.1\|2885545_2886970_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|182502	PRK10504, PRK10504, putative transporter; Provisional.	2.73997e-137
NZ_CP009712.1\|WP_011191440.1\|2888790_2890659_-\|low-affinity-potassium-transporter-Kup	gnl\|CDD\|182693	PRK10745, trkD, low affinity potassium transporter Kup.	0
NZ_CP009712.1\|WP_011191441.1\|2887189_2888116_-\|ribokinase	gnl\|CDD\|236858	PRK11142, PRK11142, ribokinase; Provisional.	0
NZ_CP009712.1\|WP_002213171.1\|2876124_2876712_+\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	8.80629e-100
NZ_CP009712.1\|WP_002213160.1\|2869626_2870277_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	1.68554e-117
NZ_CP009712.1\|WP_002213168.1\|2873973_2874597_-\|thiol:disulfide-interchange-protein-DsbA	gnl\|CDD\|182863	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA.	4.40243e-154
NZ_CP009712.1\|WP_002213170.1\|2875701_2875971_-\|YihD-family-protein	gnl\|CDD\|225626	COG3084, COG3084, Uncharacterized protein conserved in bacteria [Function unknown].	3.68849e-55
NZ_CP009712.1\|WP_011191443.1\|2870684_2873483_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP009712.1\|WP_002213155.1\|2866735_2868109_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
NZ_CP009712.1\|WP_002212252.1\|2888166_2888586_-\|D-ribose-pyranase	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	9.97421e-87
NZ_CP009712.1\|WP_002215905.1\|2884776_2885466_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.18389e-68
NZ_CP009712.1\|WP_011191439.1\|2890932_2892471_+\|ATPase-RavA	gnl\|CDD\|184118	PRK13531, PRK13531, regulatory ATPase RavA; Provisional.	0
NZ_CP009712.1\|WP_002215906.1\|2886966_2887137_-\|hypothetical-protein	gnl\|CDD\|182448	PRK10423, PRK10423, transcriptional repressor RbsR; Provisional.	1.25877e-10
NZ_CP009712.1\|WP_002213169.1\|2874624_2875611_-\|serine/threonine-protein-kinase	gnl\|CDD\|236974	PRK11768, PRK11768, serine/threonine protein kinase.	0
NZ_CP009712.1\|WP_011191444.1\|2865269_2866682_+\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|182842	PRK10923, glnG, nitrogen regulation protein NR(I); Provisional.	0

>NZ_CP009712.1|WP_002217538.1|2876711_2877242_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MNYKSPPLLGIAAYSGTGKTTLLKSLIPLLQQRQVRVGLIKHTHHNMEIDTPGKDSYELRKAGALQTLVASDCRWALMTETPEQQPLNLHYLASRLDASTIDLILVEGFKHEPINKIALYRESIGKPFSGLIDKHVIALASDKPIETTVKQLDINQPEQITEFICTWLENISFEVR
>NZ_CP009712.1|WP_002213171.1|2876124_2876712_+|molybdenum-cofactor-guanylyltransferase-MobA
MQPNITGVILAGGRSSRMGGNDKGLIPLNGKPLFQYVIDRFKPQVSDLVINANRNQGLYKESGIPVIDDIITGFVGPLAGMHAGLSYASTEWVVFAPCDVPALPSDLVSQLWQGKKQALAAYANDDERAHPTFALMHISLKTQLADYLIRGDRKLMLFLDSINAQRVKFSGKADLFSNLNTPADCDLWEQKRRGQ
>NZ_CP009712.1|WP_002213170.1|2875701_2875971_-|YihD-family-protein
MKCHRVNELIELLHPAWQQEPDLNLVQFLQKLAAEAGFKGDFSDLTDDVLIYHLKMRGAASTEVIPGLKKDYEEDFKTALLRARGIIKD
>NZ_CP009712.1|WP_002213169.1|2874624_2875611_-|serine/threonine-protein-kinase
MNNSAFNFQTLSPDLIMDALEGAGLRVDSGLTALNSYENRVYQFMDEESKRYVVKFYRPERWSSEQITEEHQFSLDLAESEIPVIAPLRLNGKTLHTHCGFFFAVFPSVGGRQYEIDNLDQLEWVGRFLGRIHQAARNSLFVARPTMGIEEYLTEPRQLLANCDLVPVKQRDKFLAAADLLITTIKQYWHTEWQPLRLHGDCHPGNILWRDGPMFVDLDDARNGPAIQDLWMLLHGDRRDQSMQLDILLEAYSEFADFDQRELALIEPLRAMRMVYYLAWVARRWQDPAFPKSFPWMAESDFWLQQTASFTEQVKLLQEPPLQLMPMY
>NZ_CP009712.1|WP_002213168.1|2873973_2874597_-|thiol:disulfide-interchange-protein-DsbA
MKNVWLALVGIVMAFSVTAAQFTDGKQYLTLDKPVTGEPQVLEFFSFYCPHCYQFEEVYQVPKAVKKALPEGTKMTRYHVEFLGPLGKQLTQAWAVAMALGVEEKITPLMFEGVQKTQTVQTPGDIRNVFIKAGISGEDYDAALNSFVVKSLVAQQQKAAEDLQLRGVPAMFVNGKYMIKNDGMDTSSMDNYVKQYADVVTFLLTQK
>NZ_CP009712.1|WP_011191443.1|2870684_2873483_-|DNA-polymerase-I
MAQIAENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVVFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNKDVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWLADVEAGKWLDSKKDRPTGQTSSQSFVAADTAPTAEVTAVLSQENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGMSFAVAPGEAAYLPLAHDYLDAPPQLDRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAASTNEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELMEKSMQLAVPLKVDVGVGANWDQAH
>NZ_CP009712.1|WP_002213160.1|2869626_2870277_+|YihA-family-ribosome-biogenesis-GTP-binding-protein
MTIRNYNYHMTHFVISAPDIRHLPRDEGIEVAFAGRSNAGKSSALNTLTNQKGLARTSKTPGRTQLINLFEVVDGVRLVDLPGYGYAEVPEEMKLKWQRALGEYLQKRNCLKGLVVLMDIRHPLKDLDQQMITWAVAVGTPVLLLLTKADKLASGARKAQLNLVREAIIPFMGDIQVEAFSSLKKIGVDKLREKLDTWFSEIPPEVMAEEFDGEGE
>NZ_CP009712.1|WP_002213158.1|2868295_2868862_-|Der-GTPase-activating-protein-YihI
MKQPNKAPRANIAAPKGTATPKRRRKTRDELDAEARDRKRQKKHSGNRSGARTNVEGSNKKGHSQTQEKDPRVGSKVPVPLVIESQVKAKSMPKPVEKNVVKPRLTPEEELAKLENDERLDALLDRLDNDEVLNKEDQAYVDLTLDRIDALMEQLGIELGDDEDDVEREEKQEDILQLLKRGNPKDTF
>NZ_CP009712.1|WP_002213155.1|2866735_2868109_-|oxygen-independent-coproporphyrinogen-III-oxidase
MSEHAIVWDLSLIQKYNYSGPRYTSYPTALEFSEDYNESAFQQAVKRYPQRPLSLYVHIPFCHKLCYFCGCNKLVTRQQHKADEYLVVLEKEIRQRAALFTGRQVSQMHWGGGTPTYLNKTQISHLMTVLREHFDFLPDAEQSIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEDFIFALIARAKALGFNSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPSLFAAQRKIKDADLPTAEQRLDILQHTIRFLTESGYQFIGMDHFARPDDELAIAQQEGTLHRNFQGYTTQGESDLLGLGVSAISMLGDSYAQNEKDLETYYACVEQRGNALWRGLTMTEDDCLRRDVIKTLICHFQLSYQPIEQRYGIRFADYFAEDFELLAPFEQDGLVERNETGLRVTPRGRLLIRNICMCFDIYLRKQARKQQFSRVI
>NZ_CP009712.1|WP_011191444.1|2865269_2866682_+|nitrogen-regulation-protein-NR(I)
MQRGIVWIVDDDSSIRWVLERALTGAGLNCVAFDSGNQVLDALATRTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPARSQPVSGPTADIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANQVRQGRFEQADTGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLELRVQEGKFREDLFHRLNVIRVHLPPLRERSEDIPRLARYFLHVAAKELGVESKNLHPETEAALTRLPWPGNVRQLENTCRWLTVMAAGQEVLVQDLPSELFETHMPDASGQRAPDSWSTLLAQWADRALRSGHQDLLSEAQPEMERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME
>NZ_CP009712.1|WP_032466595.1|2884222_2884408_+|hypothetical-protein
MFDLLTFTCVKAAVLKDYFLQIGILTEVTMFTALVTLQDLILFLPAETGVDIVLRVPTQIV
>NZ_CP009712.1|WP_002215905.1|2884776_2885466_+|FadR-family-transcriptional-regulator
MQLNTQQQAAQRNLSYLLAEKIGQRILAGEYEAGSILPGEIELGEQFGVSRTAVREAVKMLAAKGMLLPRPRIGTRVMPQTNWNYLDQELLTWWMTKENFDQVMQHFLILRTSLEPQACYLAATHANEKQRELLASLVAEMRALHSNFNREQWIQVDTQFHKLIYEASGNPFLISFANLFSSVYYSYFRAITGDEVIKLQHHQNIVDTILAGDNQGALFACQVLLKTVD
>NZ_CP009712.1|WP_002212250.1|2885545_2886970_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MIKSARSMAGLPWIAAMAFFMQALDATILNTALPSIAESLNRSPLTMQSAIISYTLTVAMLIPVSGWLADRFGTRRIFILAVSLFTFGSLLCALSGSLAFLVASRVIQGIGGAMMMPVARLALIRAYPRSELLPVLNFVTIPGLVGPVMGPLLGGLLVTYTTWHWIFILNIPIGLLGIFYARKYMPNFTMPKRTFDFVGFLLFGISLVMISTSLEIMGRPEIADYLPAATLLGGLLMLIFYIFHAKGHPNPLIGLPLFKTRTFSVGIAGNVASRLGTGCVPFLMPLMLQVGFGYSALIAGCMMAPTAIGSIMAKSAVTQVLRSLGYRKVLVGITLIIGVLIASFALQSPGMSAWMMILPLFILGIAMSTQFTAMNTITLADLTDNNASSGNSVLAVTQQLSISFGIAISATVLRFYDGLSLGGNVDHFHYTFITMGIVTLLSSLVFLLLKPRDGDNLIQGRNVKKVAPQVKNNV
>NZ_CP009712.1|WP_002215906.1|2886966_2887137_-|hypothetical-protein
MARAGLPIIAGYEVVSDFEFGGGLVALKQRLNNPEAEPQVLPLTPELIERGSVSLR
>NZ_CP009712.1|WP_011191441.1|2887189_2888116_-|ribokinase
METGKLVVLGSINADHILNIEQFPRPGETVIGQQYNVAFGGKGANQAVAAGRSGADIAFIACVGDDDIGERVRQQLTADKIDTQPIEAIKGATTGVALIFVNSDGENVIGINAGANSAVTPEYLRRYQQQVIDADALLMQLESPLDTVIAAAKLAKQHQTQVILNPAPARKLPDELLTLVDMITPNETEAERLTGIHIEQDDDAAKAAQILHDKGIATVIITLGSRGVWLSEQGKGKLVAGFKVNAVDTIAAGDTFNGALLTALLEGQSMDAAVRFAHAAAAIAVTRPGAQPSIPWRAEIDSFLQERV
>NZ_CP009712.1|WP_002212252.1|2888166_2888586_-|D-ribose-pyranase
MKKGVLLNADISAVISRLGHTDQIVIGDAGLPIPATTTRIDLALTRGVPGFLQVVDVVTQEMQVENAYLAEEIVKNNPQLHEALLVLLTQLEQRQENQIALRYISHEAFKEQTKQSRAVIRSGECSPFANIILGSGVTF
>NZ_CP009712.1|WP_011191440.1|2888790_2890659_-|low-affinity-potassium-transporter-Kup
MSTEHKQSLSAVTLAAIGVVYGDIGTSPLYTLRECFSGHYGFDVRPDVVFGFLSLIFWMLILVVSVKYLTYVMRADNAGEGGILTLMSLAGRNTSSRATSILVVLGLIGGSFFYGEVVITPAISVMSAIEGLEIAAPALDPYIVPCSIAVLTLLFVIQKHGTGSVGKLFAPVMLVWFLTLALLGLRSIIANPEVLAALNPKWAISFFVEYKSVSFFALGAVVLAITGVEALYADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEAIKNPFFLLAPDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPVINWTLYLAVVLVIIGFERSSNLAAAYGIAVTGTMVITSILFCTVAWKNWHWNRFLVAFLLMVLLIIDIPMFSANVLKLFSGGWLPLSLGLVMFIIMTTWKSERFSLLRRMHEHSNSLEAMIASLEKSPPVRVPGTAVYMSRAMNVIPFALLHNLKHNKVLHERVVLLTMRTDDVPYVHNVERVTIEQLSPTFWRVVARYGWRETPNVAEIFHRCGLEGLSCQMMETSFFMSHESLILTKRPWHLFLRGKLFIALSRNALRAPDQFEIPPNRVIELGTQVEI
>NZ_CP009712.1|WP_011191439.1|2890932_2892471_+|ATPase-RavA
MAQSSQLAERISRLSHALESGLYERQEAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFRHARAFEYLMTRFSTPEEVFGPLSIQALKEEGRYQRMTGGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGDREDSIPMRLLVTASNELPDADSSLEALYDRMLIRLWLDRVQEKQNFRSLLISRQNENHNPVAENLSITDEEFHQWQPLIDKITLPDHCFELIFQLRQRLSALEHAPYVSDRRWKKALRLLQASAFFSGRDEITPIDLILLKDCLWHDLNSFKLLQQQLEQLLTEQGYQQQSLLMKLQDINSKWLQHQQQQSDHQALTVVKQSGMFSRKAQYALPDNLTDSTLTLLLQKPLNLHDIQVNHLQVDKEALAQWLNKGGALRAKLNGVGYAQSIDAEIDDQLHIIILDVSRQPSTLSLPGATTTSVPPELLLALTKLESTLAEQRRLFSQHQPCLFTPSSWLAKIEASLLQVVEQLQFQQIQFQQRKFQQQKHSGH
>NZ_CP009712.1|WP_002212255.1|2892474_2893941_+|ATPase-RavA-stimulator-ViaA
MLSLATLDMLLSISEGELIEEMVVGLLAAPQLAIFFEKFPRIKRALMKDIPGWKQNLQQRIREASVPPGLANEFSLYQQSLLEDSPQFYAHLPDIVAQLQDLHSPFATQAKTLVQTADLAKNPPGGDSLQTLFLQRWRVSLILQTITIHHQLLEQEREQLLAELQRRLALSGALEPILTTNDNAAGRLWDMSQGHLQRGDYQLLLQYGDFLQQQPELIRLAEQLGRSRSAKAQPAPDARYEPYTVMVRQPDSVPEEVSGIHQSNDILRLLPTELVMLGMSELEFEFYRRLLERRLLTYRLQGDNWQEKTQQRPVSLKQNDEQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALLRIALADNRRCYIMLFATEIIHYELSADNGIEQAIRFLNQHFRGGTDLAACLANTLNKMEDREWYDADAVIISDFIAQRLPEELVRKIKIQQQAHQHRFHAVAMSAYGKPGIMRIFDHIWRFDTSLKSRLIRRWKR
>NZ_CP009712.1|WP_002212256.1|2894039_2895032_-|aspartate--ammonia-ligase
MKKQFIQKQQQISFVKSFFSRQLEQQLGLIEVQAPILSRVGDGTQDNLSGSEKAVQVKVKSLPDSTFEVVHSLAKWKRKTLGRFDFGADQGVYTHMKALRPDEDRLSAIHSVYVDQWDWERVMGDGERNLAYLKSTVNKIYAAIKETEAAISAEFGVKPFLPDHIQFIHSESLRARFPDLDAKGRERAIAKELGAVFLIGIGGKLADGQSHDVRAPDYDDWTSPSAEGFSGLNGDIIVWNPILEDAFEISSMGIRVDAEALKRQLALTGDEDRLELEWHQSLLRGEMPQTIGGGIGQSRLVMLLLQKQHIGQVQCGVWGPEISEKVDGLL

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Crispr_ID: NZ_CP009712_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009712_7

3482717-3483002

Orphan

Consensus_repeat	Method
GATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP009712_7

>merge|NZ_CP009712|7|3482717-3483002|PILER-CR
GATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCGGTCAGCTCCACTCATTCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGCAGGATAAGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCGGTCAACGCCACTCATGCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGGAGGATAGGGCGTGAGGGGAATGACTGTCCACGACACTTTTCATAAAAGAAAGCGGCTTACCG

>NZ_CP009712|7|3|3482717-3483002|PILER-CR
GATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCG	GTCAGCTCCACTCATTCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGCAG
GATAAGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCG	GTCAACGCCACTCATGCCACAAAATCCCGCTTCGGCGGGTTTTTGCTTTGGAG
GATAGGGCGTGAGGGGAATGACTGTCCACGACACTTTTCATAAAAGAAAGCGGCTTACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009712.1\|WP_002210142.1\|3473283_3475620_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	unknown	unknown	gnl\|CDD\|236842
NZ_CP009712.1\|WP_011193137.1\|3483101_3483806_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP009712.1\|WP_011193140.1\|3477443_3478019_-\|divisome-associated-lipoprotein-YraP	unknown	unknown	gnl\|CDD\|182907
NZ_CP009712.1\|WP_002210149.1\|3481378_3482278_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
NZ_CP009712.1\|WP_011193139.1\|3478029_3478620_-\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
NZ_CP009712.1\|WP_002210147.1\|3478890_3479244_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NZ_CP009712.1\|WP_002210421.1\|3486163_3486559_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP009712.1\|WP_002210418.1\|3487541_3487847_-\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
NZ_CP009712.1\|WP_002210415.1\|3488607_3488997_-\|EnvZ/OmpR-regulon-moderator-MzrA	unknown	unknown	gnl\|CDD\|236728
NZ_CP009712.1\|WP_011193141.1\|3476511_3477237_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
NZ_CP009712.1\|WP_002210419.1\|3487143_3487539_-\|membrane-protein	unknown	unknown	gnl\|CDD\|227681
NZ_CP009712.1\|WP_011193138.1\|3479342_3481316_-\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|225649
NZ_CP009712.1\|WP_002210414.1\|3488993_3489692_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP009712.1\|WP_002210140.1\|3472076_3473000_+\|TIGR01212-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
NZ_CP009712.1\|WP_011193134.1\|3486862_3487147_-\|cell-division-protein-FtsH	unknown	unknown	gnl\|CDD\|372871
NZ_CP009712.1\|WP_011193136.1\|3484067_3484961_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
NZ_CP009712.1\|WP_002210416.1\|3488001_3488382_-\|DUF1090-domain-containing-protein	unknown	unknown	gnl\|CDD\|368932
NZ_CP009712.1\|WP_011193135.1\|3485091_3486078_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223512
NZ_CP009712.1\|WP_002210143.1\|3475861_3476515_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	unknown	unknown	gnl\|CDD\|236980
NZ_CP009712.1\|WP_011193143.1\|3466796_3471254_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968

Protein	Function_ID	Function_description	E-value
NZ_CP009712.1\|WP_002210142.1\|3473283_3475620_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NZ_CP009712.1\|WP_011193137.1\|3483101_3483806_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	3.1632e-66
NZ_CP009712.1\|WP_011193140.1\|3477443_3478019_-\|divisome-associated-lipoprotein-YraP	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	2.88944e-112
NZ_CP009712.1\|WP_002210149.1\|3481378_3482278_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
NZ_CP009712.1\|WP_011193139.1\|3478029_3478620_-\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	1.87705e-140
NZ_CP009712.1\|WP_002210147.1\|3478890_3479244_-\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	4.17484e-53
NZ_CP009712.1\|WP_002210421.1\|3486163_3486559_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.95631e-26
NZ_CP009712.1\|WP_002210418.1\|3487541_3487847_-\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	6.65807e-40
NZ_CP009712.1\|WP_002210415.1\|3488607_3488997_-\|EnvZ/OmpR-regulon-moderator-MzrA	gnl\|CDD\|236728	PRK10629, PRK10629, EnvZ/OmpR regulon moderator MzrA.	3.4571e-56
NZ_CP009712.1\|WP_011193141.1\|3476511_3477237_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	1.60588e-142
NZ_CP009712.1\|WP_002210419.1\|3487143_3487539_-\|membrane-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	1.13501e-54
NZ_CP009712.1\|WP_011193138.1\|3479342_3481316_-\|penicillin-binding-protein-activator	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	0
NZ_CP009712.1\|WP_002210414.1\|3488993_3489692_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	7.94641e-51
NZ_CP009712.1\|WP_002210140.1\|3472076_3473000_+\|TIGR01212-family-radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	6.23198e-179
NZ_CP009712.1\|WP_011193134.1\|3486862_3487147_-\|cell-division-protein-FtsH	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	2.94375e-23
NZ_CP009712.1\|WP_011193136.1\|3484067_3484961_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.35691e-52
NZ_CP009712.1\|WP_002210416.1\|3488001_3488382_-\|DUF1090-domain-containing-protein	gnl\|CDD\|368932	pfam06476, DUF1090, Protein of unknown function (DUF1090). This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.	1.29686e-29
NZ_CP009712.1\|WP_011193135.1\|3485091_3486078_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP009712.1\|WP_002210143.1\|3475861_3476515_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	gnl\|CDD\|236980	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB.	6.53077e-145
NZ_CP009712.1\|WP_011193143.1\|3466796_3471254_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0

>NZ_CP009712.1|WP_002210149.1|3481378_3482278_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MNQHDRAVISASTLYVVPTPIGNLGDITHRALEVLKGVDLIAAEDTRHTGLLLQHFAINARLFALHDHNEQQKADQLLAKLQEGQSIALVSDAGTPLINDPGYHLVRRCREAGIRVVPLPGACAAITALSAAGLASDRFCYEGFLPAKTKGRKDTLQALIEEPRTLIFYESTHRLLESLQDMVTVLGPQRYVVLARELTKTWESIHGAPVGELLAWVKEEETRRRGEMVLIVEGHKVQSDDALPADALRTLALLQKELPLKKAAALAAEIHGVKKNALYKYALEQQQGDVETEEDDIQQ
>NZ_CP009712.1|WP_011193138.1|3479342_3481316_-|penicillin-binding-protein-activator
MLSSTFVRSKAGLVPVILAALILAACTGDAPQTPPPVNIQDEASANSDYYLQQLQQSSDDNKADWQLLAIRALLREAKVPQAAEQLSTLPANLSDTQRQEQQLLAAELLIAQKNTPAAADILAKLEATQLSTNQKVRYYQAQIAANQDKATLPLIRAFIAQEPLLTDKAHQDNIDGTWQSLSQLTPQELNTMVINADENVLQGWLDLLRVYQDNKQDPELLKAGIKDWQTRYPQNPAAKNLPTALTQISNFSQASTAKIALLLPLSGPAQVFADAIQQGFTAAQNGSAVTASVPVTPNVTESSPTDTAAVVSDDTPATLPAPVPPPVVTNAQVKIYDTNTQPLAALLAQAQQDGATLVVGPLLKPEVEQLSATPSTLNILALNQPEASNNSPNICYFALSPEDEARDAAHHLWEQQKRMPLLLVPRGALGERIAKAFADEWQKQGGQTVLQQNFGSTTELKQSINSGAGIRLTGTPVSVSNVAAAPASVTIAGLTIPAPPIDAPVVSTSSSGNIDAVYIIATPSELTLIKPMIDMATSSRSKPALFASSRSYQAGAGPDYRLEMEGIQFSDIPLMAGSNPALLQQASAKYANDYSLVRLYAMGIDAWALANHFSEMRQIPGFQVKGVTGDLTASSDCVITRKLPWLQYRQGMVVPLA
>NZ_CP009712.1|WP_002210147.1|3478890_3479244_-|YraN-family-protein
MSQRDTGAHYENLARRHLERAGLVFQAANVAFRGGEIDLIMRDGDAWVFVEVRFRRNDLFGGAAASITPRKQQRLHLAAAVWLAQRGASFATTSCRFDVVAITGNQLEWLPNAFNTD
>NZ_CP009712.1|WP_011193139.1|3478029_3478620_-|DnaA-initiator-associating-protein-DiaA
MLERIKGCFTESIQTQIAAAEALPDAISCAAMALVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNADNVVLTAITNDRLHDEVYAKQVRALGQAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQLDVEIRIPSHRGARVQELHMLTVNCLCDLIDNTLFPHQDD
>NZ_CP009712.1|WP_011193140.1|3477443_3478019_-|divisome-associated-lipoprotein-YraP
MKVGYIFAMLFSTLLLQGCVGAVVVGSAAVATKTATDPRTIGTQVDDGTLEARVVNALSKDKEIKSQTRFVVTAYQGKVLLTGQTPSAELSNRAKQIASGVDGATEVYNEMRLGKPVDLSTASMDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQQEAQSAAQIASKVSGVKHVTTAFTIVK
>NZ_CP009712.1|WP_011193141.1|3476511_3477237_+|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MISVRRGLSQLWYWGKRGVIGIIALWMAGILIFAFLPVPFSMVMIERQLGAWLTGDFAYVAHSDWVPMDEISPYMALAVMAAEDQKFPDHWGFDVGAIESALSHNQRNQKRIRGASTLSQQTAKNVFLWDGRSWVRKGLEVGLTAGIELIWTKRRILTVYLNIAEFGNGIFGVEAAARHFFNKPASKLSASEAALLAAVLPNPLRFKVNAPSGYVISRQQWILRQMHQLGGKTFLQENTLD
>NZ_CP009712.1|WP_002210143.1|3475861_3476515_+|isoprenoid-biosynthesis-glyoxalase-ElbB
MKTVGVVLSGCGVLDGAEIHESVLTMLALDRAGAEVLFFAPDKPQLHVINHITGEIVAEERNVLVESARIARGLITPLSAADPEVLDALIVPGGFGAAKNLCDFAIKGGECSVEPDLYKLIQLMHKSGKPIGLMCISPVMLPKLLGKPIRLTIGNDPDTIDAIEIMGGEHVICPADDVVIDLENKVVTTPAYMLAGSISEAAKGIDKLVTKVLDLTE
>NZ_CP009712.1|WP_002210142.1|3473283_3475620_+|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB
MKQIRVLAQYYVDLMVKLGLVRFSLLLASALVLLAMVVQMAVTFVLRGSVETLDLVRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVDKLEVMRHRDLELNKQLTENITQLNQEIVEREKAEKAHLQVVDKLKEEMGHREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTELDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSGLLVQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQGKIVVRVRREGNDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITVKSTQGVGSCFTLTIKAPAVQEASNAPSGDDMPLPALHVLLVEDIELNVIVARSVLEKLGNSVDVAMNGHDALAMFNPEDFDLVLLDIQLPDMSGLDIARQIRAEYGKQSLPPLVALTANVLKDKKEYLDAGMDDVLSKPLSVPALTAMIKQFWDSKPSSAVQKQEHKVMQTHESLLDTTMLEQYIDLVGPQLIHQSLEMFEQMMPGYLAVLDSNMTARDQKGITEEAHKIKGAAGSVGLRHIQQLAQQIQTPTLPAWWDNVQDWVDELKLEWRNDVQVLREWAAEVEKK
>NZ_CP009712.1|WP_002210140.1|3472076_3473000_+|TIGR01212-family-radical-SAM-protein
MQLQQLVNMFGADLQRRYGEKIHKLTLHGGFSCPNRDGTLGRGGCTFCQVASFADEQMQQQSITQQLAIQAKKANRANRYLAYFQAYTSTYAEVNALAAMYQQALCEADIVGLCVGTRPDCVPDAVLDLLSSYQQQGYEVWLELGLQTANDKTLKRINRGHDFACYQQTARRARARGLKVCCHLIVGLPGEDRAQGRETLEKVVTTGVDGIKLHPLHIVEGSTMAKAWRAGRLTALALEDYVLTAGEMIRHTPAEVVYHRISASARRPTLLAPLWCENRWTGMNELNNYLLQHGVQGTAIGDAYCYR
>NZ_CP009712.1|WP_011193143.1|3466796_3471254_-|glutamate-synthase-large-subunit
MLYDQSQERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGAILADGKTGDGCGLLLQKPDRFFRMVAEERGWRLAKNYAVGMMFLSQDEELAKASRRIVEEELQNETLSIVGWREVPTNPDVLGEIALSSLPRIEQIFVNAPAGWRSRDMERRLFVARRRIEKRISDKDFYACSFSNLVTIYKGLCMPADLPRFYLDLADLRLESAICLFHQRFSTNTVPRWPLAQPFRYLAHNGEINTIAGNRQWAKARAYKFKTPLIPDLQDAAPFVNETGSDSSSLDNMLELFLSGGMDLIRAMRLLVPPAWQNNPDMDTDLRAFFDFNSMHMEPWDGPAGIVMSDGRYAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVGPGELMVIDTRSGKILHSAETDNDLKSRHPYKEWMEKNVKRLVPFEDLPEEQVGSRQLDDSQLETYQKQFGYSNEELDQIIRVLGENGQEATGSMGDDTPFAVLSSGPRIIYDYFRQQFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFQQLTTLEGEHYRADRLDLTFNPAENDLEQAVLSLCDEAERKVRDGAVMLVLSDRAIAPNRLPVPAPMAVGAIQTRLVDKSLRCDANIIVETASARDPHHFAVLLGFGATAIYPYLAYESLAKLVDSQAIDKKYRDVMLNYRNGINKGLYKIMSKMGISTVASYRCAKLFEAVGLHRDLSDLCFQGVVSRIGGASFSDFQQDLQNLSKRAWLKRKPLDQGGLLKFVHNGEYHAYNPDVVSTLQKAVHSGEYSDYQAYAKLVNERPIATLRDLLAIKPQGTPIPVDQVEPAESLFKRFDTAAMSIGALSPEAHESLAIAMNSLGGFSNSGEGGEDPARYGTNKVSRIKQVASGRFGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGTGASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIVKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRRDHYHGLPERVVNYFHFIARETREIMAELGVSQLVDLIGRTDMLLELDGISAKQNKLDLSPMLKTATPHPGKALYCTESNPPFDKGLLNKELLSQAEPYIEAKQSKTFYFDIRNTDRSVGAALSGAIATKHGDQGLATDPIKAYFSGTAGQSFGVWNAGGVELMLTGDANDYVGKGMAGGRIAIRPPVGSNFRSHEASIIGNTCLYGATGGKLFAAGRAGERFAVRNSGAITVVEGIGDNGCEYMTGGIVCVLGRTGINFGAGMTGGFAYVLDEDGEFRKRVNPELVEVLDVEQLAIHEEHLRGLITEHVQLTGSSRGEEILANWPEWVTKFALVKPKSSDVKALLGHRSRSAAELRVQAQ
>NZ_CP009712.1|WP_011193137.1|3483101_3483806_-|pirin-family-protein
MITCRTAEQCGQADFGWLQARYTFSFGHYFDPTLLGYASLRVLNQEVLAPGAAFQPRTYPQVDILNLILQGEAEYRDSLGNHVHAKTGDALLFSPQQGVSYSEHNLSANKSLTRIQLWLNACPERESAPTQHQRLSTRPVQLLASPAGEQGSLQLRQQMWIHHLALAAGEQQKMPLHGHRAYLQSIHGTVDVAGPQTGTSQRLTCGDGAFVEEEQHLVIKAITPLRALLIDLPV
>NZ_CP009712.1|WP_011193136.1|3484067_3484961_+|LysR-family-transcriptional-regulator
MARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHITIVSEALSPAWKLFPLIDKLALKANTQVSILTEVLAGAWERLEQGRADIVIAPDMHFRASSEINSRKLYKVTSVYVASPDHPIHQEPEPLSELTRVKYRGIAVADTARERPVITVQLLDKQQRLTVSTIEDKRRALLAGLGVATMPYEMVEKDIAAGRLRVIGPEYSREADIIMAWRRDSMGEAKSWCLRKIPKLLGK
>NZ_CP009712.1|WP_011193135.1|3485091_3486078_-|glutathione-S-transferase-family-protein
MGQLINGVWKDVWYDTQSTGGHFKRSTAQFRNWVTTDGQAGPQGKGGFNAEAHRYHLYVSLACPWAHRALLMRTLKGLESLISVSVVHPLMQENGWTFSSDFPAATGDALYHLDYLYQLYLRAAPDYSGRVTVPVLWDKQQQTVVSNESADIIRMFNNAFDDVGAKAGDYYPTALRNDIDDINGWVYDQVNNGVYKAGFATTQEAYDEAVGTLFSALDRLEQILGQHRYLTGNQLTEADLRLWTTLVRFDPVYVTHFKCDKRRISDYPNLYGFLRDIYQMPGIAETVDFAHIRTHYYRSHGTINPYGIISIGPQQNLLEPHDRANRFV
>NZ_CP009712.1|WP_002210421.1|3486163_3486559_-|DoxX-family-protein
MNKLQDTGLLVARILMPIIFIVAGYGKMGDAYAGTQQYMQAMGVPGFFLPLTILLEFGGGLAILFGFLTRTTSLFIAGFTLLTAFIFHTDFTDSTNQLMFMKNLSIAGGFLVLAMAGPGGFSIDRLLGKKW
>NZ_CP009712.1|WP_011193134.1|3486862_3487147_-|cell-division-protein-FtsH
MSRHQLALEKEALLREIQQQRLDLADNAARWVEVTAPFDRGWAQIVSMRKYLIAGGSLVALYSVRHPSKLLRWSRRAVSTWSTLQLFRRTFLSR
>NZ_CP009712.1|WP_002210419.1|3487143_3487539_-|membrane-protein
MAEQPRTQGPAKGVLDTVHRIATIVVGIVETRVRLAVIELEEEKATLVQLLMMAGITLLLTAFGLMSLLVLVIWAIDPAYRLVALGTTTAVLLILALIGVIWTLTKVRHSTLLGSTRKQLETDRELLEKDH
>NZ_CP009712.1|WP_002210418.1|3487541_3487847_-|DUF883-domain-containing-protein
MPQDKTSEHLRAELKSLADTLEEVLQSSTDKPKAELDKLRAKAESALKDTRVRLSETSDKIAAQTKEIADKADNYVHDNPWTGVGIGAAVGVVLGVLLSRR
>NZ_CP009712.1|WP_002210416.1|3488001_3488382_-|DUF1090-domain-containing-protein
MLLRRSLLLALPLITFCGFATAASDNECDIKAKEIQQQIDYAKQHGNTRRAAGLETALKEVKTHCTEESLQAERQKKIRQKQHNVTERQQELKEAQQKGDAGKIAKQQKKLAEAQAELQQAQSQQH
>NZ_CP009712.1|WP_002210415.1|3488607_3488997_-|EnvZ/OmpR-regulon-moderator-MzrA
MINFRGRFGRPLWHYLVLPVVLLLLAVILLTPMIVQTESTLKIRPNQQGLSLPDGFYLYQHLNGRGIHIKSIIPENDSLVVSLEFPEQQMQAIEVLQDVLPAGYAIVASESKKRHRLLPVFRSNQQNLG
>NZ_CP009712.1|WP_002210414.1|3488993_3489692_-|DedA-family-protein
MDIIKELLHALWAQDYETLADPSLVWAIYLLLFVILFLENGLLPAAFLPGDSLLILVGVLIAKGAMSFPVTLVVLTTAASLGCWVSYIQGRWLGNTKVVQGWLSHLPAHYHQRAHNLFHRHGLSALLVGRFLAFVRTLLPTIAGLSGLDNARFQFFNWMSGLLWVLILTTMGFAFGKTPVFLRYEDEVMFVLMLLPLALLVIGLFGSLYVLWRKKNATPAKVSHDNKKGKSE

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Crispr_ID: NZ_CP009712_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009712_8

4483143-4483254

Orphan

Consensus_repeat	Method
TTTGAAGAAAATTCCTAATGGTTAATTAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009712_8

>merge|NZ_CP009712|8|4483143-4483254|CRISPRCasFinder
TTTGAAGAAAATTCCTAATGGTTAATTAATGACGGGTATTAATTCAAAAAAACACCTATTATTTAGGAATGCGAGAAGATGATTTGAAGAAAATTCCTAACGGTTAATTAAT

>NZ_CP009712|8|6|4483143-4483254|CRISPRCasFinder
TTTGAAGAAAATTCCTAATGGTTAATTAAT	GACGGGTATTAATTCAAAAAAACACCTATTATTTAGGAATGCGAGAAGATGA
TTTGAAGAAAATTCCTAACGGTTAATTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009712.1\|WP_002211575.1\|4491261_4491786_+\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|226047
NZ_CP009712.1\|WP_002211574.1\|4491809_4493312_+\|type-VI-secretion-system-contractile-sheath-large-subunit	unknown	unknown	gnl\|CDD\|226048
NZ_CP009712.1\|WP_002211573.1\|4493644_4494130_+\|type-VI-secretion-system-tube-protein-Hcp	unknown	unknown	gnl\|CDD\|225699
NZ_CP009712.1\|WP_011192715.1\|4476035_4477373_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|371506
NZ_CP009712.1\|WP_011192708.1\|4490547_4491156_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP009712.1\|WP_002211571.1\|4494946_4496296_+\|type-VI-secretion-system-baseplate-subunit-TssK	unknown	unknown	gnl\|CDD\|226053
NZ_CP009712.1\|WP_002211572.1\|4494403_4494943_+\|type-VI-secretion-system-lipoprotein-TssJ	unknown	unknown	gnl\|CDD\|226052
NZ_CP009712.1\|WP_011192713.1\|4478450_4479644_-\|ImpA-family-type-VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|226046
NZ_CP009712.1\|WP_011192717.1\|4473654_4475337_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|225439
NZ_CP009712.1\|WP_011192712.1\|4479742_4480768_-\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|226051
NZ_CP009712.1\|WP_012413818.1\|4487890_4490563_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP009712.1\|WP_011192716.1\|4475337_4476039_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009712.1\|WP_002211579.1\|4487001_4487763_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NZ_CP009712.1\|WP_002215321.1\|4473175_4473658_-\|DcrB-related-protein	unknown	unknown	gnl\|CDD\|227722
NZ_CP009712.1\|WP_011192719.1\|4469837_4470932_+\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|236754
NZ_CP009712.1\|WP_011192714.1\|4477412_4478444_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_CP009712.1\|WP_011192711.1\|4483431_4486089_+\|type-VI-secretion-system-ATPase-TssH	unknown	unknown	gnl\|CDD\|274528
NZ_CP009712.1\|WP_011192718.1\|4472200_4472803_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP009712.1\|WP_002211582.1\|4480767_4482648_-\|type-VI-secretion-system-baseplate-subunit-TssF	unknown	unknown	gnl\|CDD\|226050
NZ_CP009712.1\|WP_011192710.1\|4486299_4486845_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069

Protein	Function_ID	Function_description	E-value
NZ_CP009712.1\|WP_002211575.1\|4491261_4491786_+\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|226047	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	5.26642e-84
NZ_CP009712.1\|WP_002211574.1\|4491809_4493312_+\|type-VI-secretion-system-contractile-sheath-large-subunit	gnl\|CDD\|226048	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	0
NZ_CP009712.1\|WP_002211573.1\|4493644_4494130_+\|type-VI-secretion-system-tube-protein-Hcp	gnl\|CDD\|225699	COG3157, Hcp, Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion, and vesicular transport].	1.41624e-58
NZ_CP009712.1\|WP_011192715.1\|4476035_4477373_-\|glycosyl-transferase	gnl\|CDD\|371506	pfam11397, GlcNAc, Glycosyltransferase (GlcNAc). GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1, a ubiquitous eukaryotic protein, in the cytoplasm.	1.44816e-71
NZ_CP009712.1\|WP_011192708.1\|4490547_4491156_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	9.32653e-21
NZ_CP009712.1\|WP_002211571.1\|4494946_4496296_+\|type-VI-secretion-system-baseplate-subunit-TssK	gnl\|CDD\|226053	COG3522, COG3522, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	0
NZ_CP009712.1\|WP_002211572.1\|4494403_4494943_+\|type-VI-secretion-system-lipoprotein-TssJ	gnl\|CDD\|226052	COG3521, COG3521, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	1.44402e-54
NZ_CP009712.1\|WP_011192713.1\|4478450_4479644_-\|ImpA-family-type-VI-secretion-system-protein	gnl\|CDD\|226046	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	7.7898e-68
NZ_CP009712.1\|WP_011192717.1\|4473654_4475337_-\|OmpA-family-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	2.77533e-34
NZ_CP009712.1\|WP_011192712.1\|4479742_4480768_-\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|226051	COG3520, COG3520, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	2.16581e-133
NZ_CP009712.1\|WP_012413818.1\|4487890_4490563_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP009712.1\|WP_002211579.1\|4487001_4487763_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	2.81932e-83
NZ_CP009712.1\|WP_002215321.1\|4473175_4473658_-\|DcrB-related-protein	gnl\|CDD\|227722	COG5435, COG5435, Uncharacterized conserved protein [Function unknown].	1.8658e-59
NZ_CP009712.1\|WP_011192719.1\|4469837_4470932_+\|lytic-murein-transglycosylase-B	gnl\|CDD\|236754	PRK10760, PRK10760, murein hydrolase B; Provisional.	0
NZ_CP009712.1\|WP_011192714.1\|4477412_4478444_-\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	6.3376e-12
NZ_CP009712.1\|WP_011192711.1\|4483431_4486089_+\|type-VI-secretion-system-ATPase-TssH	gnl\|CDD\|274528	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP009712.1\|WP_011192718.1\|4472200_4472803_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.11998e-11
NZ_CP009712.1\|WP_002211582.1\|4480767_4482648_-\|type-VI-secretion-system-baseplate-subunit-TssF	gnl\|CDD\|226050	COG3519, COG3519, Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and vesicular transport].	0
NZ_CP009712.1\|WP_011192710.1\|4486299_4486845_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	2.76157e-21

>NZ_CP009712.1|WP_002211582.1|4480767_4482648_-|type-VI-secretion-system-baseplate-subunit-TssF
MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSARTQIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHIAPGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVGDLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATIIRAGHGETAKDTVISDQPLSFEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILLDRLPQDLVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFAINKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYASTEVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQPSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQIDALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAINVFTETELNSMQRGRVGHWKARPGRRGVL
>NZ_CP009712.1|WP_011192712.1|4479742_4480768_-|type-VI-secretion-system-baseplate-subunit-TssG
MLPDESVHQEKHANLDAWYQESQPWNAGFISMMRANAARNPTLPAPGKAPLPEQEAFRIGQSAHMTFSPREISHAVMKDGKMDLQLFGLGIWGPNGAMPLQMTELAYTRAELHDHTMTDFVDLFHHRALSQLYRAWFVSQDTASLDRQSDEKFSFYVGSLAGLDPQELNDTELPVHARLASSAHLIREARNPEGLVGALQYYFDVPVRMVEYAEQWIFLEESDQTQLGDGAGAMLLGDGAILGNTVLDRQHKFQLILGPLSLQQYLRFSLWGQDLPVLREWVRNFVGFEYAWEVQLLLSADEVPMATLDGGHQLGYTSWLARSDTTLDVGGMSFEPEMHHD
>NZ_CP009712.1|WP_011192713.1|4478450_4479644_-|ImpA-family-type-VI-secretion-system-protein
MSEQSIAERAGYYQSMMQPIPGDFPCGKNLEYDPAFIMLQTKLQPKQAAEYGNFVEVAEPNNWTDIERKCLELLNNSRDIRLFIILMRCRMRQVGVGALQEGLEAILWCLDTWPDQLHPQLFDEGEFEPLMRGNAFAELEDIDGFIADFRNQQLPKAAGVQLSIKEFEKAHSVPREEGALDEGTLEAVKQEWQNRSDHTILSLQHAYALLQGLATRLNNSLGEDTPDFVRMTSVLRHFDAAITPIAPIVVPEPIETPDVVELYPVATAMLASTEMPVTAEVQTVAETQMAIPIEAPQQRQAVVTPSPPLQPLQLQSAQLQPVPIQSPPVPVQQQGIQNRADALARLIEVREWFTAMEPSSPVIALLAFSEKTIGKSFGELLQFIPQELISKLNEGQE
>NZ_CP009712.1|WP_011192714.1|4477412_4478444_-|fimbrial-protein
MTRKLFILVFGAAISGQVNANCTLHLVSNSESVAGVMPLTFPISSFTFTIDADAPNDSTVPILEKVAQPQGLAVIYHCTSVDRYGKNVGPILGQDLGNGLFATNIDGIAIKPAWNNGAAYGYFNSSGIMPAFEREGVPTEEGFWTYPGTSHFRFELYKIKDTLNLTDTNGERVLPGGTIAYTWATNNSLANYAQRLEIGEIKVISTPSCTFDGPQKVNFGLVTSSNLNNGGIERDLDFNITCKTDYGHYSATAAISTQTPSDDNNYIKVKDNQNQEDRLLIKISDTNGQQMKVNGSTTEQQVNIASGVPAGFRWKAKLEAAPAANKPAIGDFSAMAEIILQIK
>NZ_CP009712.1|WP_011192715.1|4476035_4477373_-|glycosyl-transferase
MQSVPSIFVSIASYRDPELIPTLHDMINTAERPENLNIAIFWQNDNDINTFLNQGMQLIERKTHQGYPLYQLEYNRARVSVLSVHYYESRGACWARHMAETLFQDEAFFLQIDSHCRFIPHWDHEMIAMLDSLRAESPKPILSSYPPAYEPGENEIRKDYVSRMIFNLFTQEGIVQMLSTTITETAPVRCGYLAGGFIFSDGSFAREVPNDPNIFFIGEEIAMAARAFTHGYDIYAPHKILLWHFYTRAEHSKVWSDHNNEAKETGAVDMAWWERDKIAKDRVCTLLDGDKDHRVLAPYTLGTQRSLSEFEYRLGINIKNRAVHPDAAGEKKVSFFTDLPTSHEDWLSSLISVNKKTLKVEKKEVDFTREDVEWWHIGVYNPQNVAVMVEKVDPQNLSKTVTPVDETTFELKLAFNTQTHPNAQTIRICPYMRTQGWGDVVEKPW
>NZ_CP009712.1|WP_011192716.1|4475337_4476039_-|hypothetical-protein
MSSADIFKKILSIDTLLSFDGVIPSLSEFQLKLVTLIEQFGHALQSEGHNETEVDRLCHQICHSLDKRAGSAIKENGLSWEGYSLVHYFYGYIAPVPSESESLEALLNSDDATVSQFALKILALSQNLPIHDEKSLQLLARYSHRSLRQNVIATDDDIDPEEWLGSALKREETIEAEQVPEANIVSEANIALEANIVSEQRRSSRPFYLQLITLTLLLSTLWFWCSRYLGDLS
>NZ_CP009712.1|WP_011192717.1|4473654_4475337_-|OmpA-family-protein
MFKVKLNKTLSLLWLAAVGTLLVSVNFKGNALWNNVIFITFLALMVLAIWKHYALKPKPPQVPIPVPQETAEPVEQESTVILILGPYAEKWFSNPESPDSTRFSSHAVWILITNPAALQKRLTYIAEHHPSAQVLTFFPFLPDVYENAAVMMSKLTVWQNTFSTLSLRSPLPCVFAIYAQLSNERLSHNSDNAYWTGNINLANQQPIEITQALQSLSQRLELQDINHSGFATQRNVMAHNLFTWLNESGVTNLLQSIFSRTPLRLTDVILSDNGKGFIRHGAWSAWLEKKFGIIPSLASTLSLPPFPAVINDQKPAIKPRVKTPVIKPIPASRGWLWSVCFAAVLLASHMLNTLWQEKNRHAQFNQQMVPLDNINDFSAQYLARSITQLTDEGKTLTTCVNTFDVTRWGLSQCQTLLSQINRRIESYENIPVFSFAQKLPLFDSNSTKLKLNSQTNEMMMELLSLVEQNKGKKILIVGHSDNTGSSSMNMTLSEQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQDRTRMTEPKPL
>NZ_CP009712.1|WP_002215321.1|4473175_4473658_-|DcrB-related-protein
MNAIPSTYSIFEGTFLTPAPVLDRSVNILMFRDPDNHEYNIIINRTLLEEEDTSETFCEKEMDALRNKLPGFQVEGKLLKHEIGPAKLPVVQVANHYLQDGKKFRQVQSIMQLPYHSLTNTDGRSVLIFTLNTDGEFTEYQRKHYVQIINSFNPHVAVAN
>NZ_CP009712.1|WP_011192718.1|4472200_4472803_+|LuxR-family-transcriptional-regulator
MFSVAIKTRNAFYEFGLLSLLKKVLIKEDDMDYSIVPSHEKRASNNANVIFKDLMVIVNIYQENSFIQKNDSNNNKPMMTVNIPFNSSQLGLYDVISKIKKILNIARLNYNMMMKSDLQRRIGLKNYIQLSMTESKVVQLTGKGHSTTDISKILDRSEKTILTHRRNAIRKLGMFNRLEFYKYASLMRNYSNKDAVFICL
>NZ_CP009712.1|WP_011192719.1|4469837_4470932_+|lytic-murein-transglycosylase-B
MRYLAVILPLFTLLSACSSQPTPPVAATPSDSPVQGGFLLEPEHAGQLQNGDFAFNPDTTRFVDKMVREHGFDRQQLHDVLAQTQRLDWVIRLMDKQAPTSRPPSGPNGAWNRYRNKFITPDNVQNGVVFWNQYEGALQRAWEVYGVPPEIIVGIIGVETRWGRVMGKTRIIDALATLSFAYPRRATFFTGELETFLLMARAEGKDPLSLRGSYAGAMGYGQFMPSSFKRYAVDFDGNGHINLWDPVDAIGSVANYFKSHGWTKGAPVAVPANGQAPNLENGFKTRYPISTLAAAGLSPKGPLGDYQETSLLRFDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGEAVGRVRKGESMITQ
>NZ_CP009712.1|WP_011192711.1|4483431_4486089_+|type-VI-secretion-system-ATPase-TssH
MAITRKYLFGKLDATLFKGIESATTICKLRGNPYVELVHWLNQLWHQEDNDLKQIIRYFAVDVDAFERELAQALAKLPVGATSISDFSYHIELATERAWIYASLECLDTRIRSGHLLLALLTTMELRRAFFAIAPSMEKIPLEHLSKDLNFITQASPEANEAASDGSPLYDGALPGEASNAIGAAKSGGTLAQYTTDLTALAREGKIDPVLGRNHEINTMVDILLRRRQNNPLLTGDAGVGKTAIVEGLALAIAAGSMPPALSQVSLLSLDIVALSAGASMKGEFETRLKSVLDEAIAAEKPVILFIDEVHTLIGAGGNAGTGDAANLLKPALARGQLRTIGATTWSEFKRHIEKDPALTRRFQVLQVDEPDENTAISMLRGLIPALEKHHGVWIMDEALQAAVRLSHRYIPARQLPDKAISLLDTACARIAVAQHSQPIELQHLTFQSETAQTELVSLEKARHFGKAQDARTEQLKTSIAEHGEAADKLDQRWQAERELVSAITTIRTALYDLVSQPEPDEEKRRAYQAQLVQLEAQLSQVRTSLPLVQTEVNAEVIASIVADWTGIPVGQMLKDDIRAVMELPQRLEARVIGQPHALMQLGENIMTARAGLSDPRKPLGVFMLVGPSGVGKTETALAIAESMYGGEQNMITINMSEYQESHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEIEKAHSDVHELFFQVFDKGQMEDGEGRFIDFKNTILLLTSNVGSELLSNLLADPDTAPDQDGILTALQPELLKVFPAAFLGRVTVIPYLPLQQDALQHIVRLHLDRIGARLYSQHQLTLKYSDEVVDDVVSRCAVSETGARMLIRYIEQNITPKIGKYILGDSDVKPEQIIFVHKNENGFVIALQ
>NZ_CP009712.1|WP_011192710.1|4486299_4486845_+|type-1-fimbrial-protein
MRKLNLAVCAVALSVISATSYAAAGGTVTFNGKLIADTCQVDTASENITVTLPTLSIQSLAVAEAQDGSKDFEIKVLDCPATLTQVGAHFNAIDSSGVNPATGNLVNKAPTDAAGNVEVRLYNVDDSSQIRVGSTGNMVNIVYVGATPGTANLTYAGGYYATDATTPGEVNAKVEYVLAYN
>NZ_CP009712.1|WP_002211579.1|4487001_4487763_+|fimbria/pilus-periplasmic-chaperone
MFSKIIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNANINSMKLPFMVTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKEGNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQLKWTLVDDNQKGRGVKVVNPTPYYISFDSGSITVGAKSVEIITDMVPPFSEKMFFPKLKLLGSTSISKMNYKILNDYGAAIDEELSFSQGQGVLVSKKK
>NZ_CP009712.1|WP_012413818.1|4487890_4490563_+|fimbrial-biogenesis-outer-membrane-usher-protein
MNRTDIACYIENNIGKLNYLPYKASLSVAVIFIGSVLLVTKSISAVPMSQDTNESAAVIPVEFNADFIHGGGVDVMRFMHENPVAPGVYDVTVIINGKNRGKHRIRFELSEGESTAEPCFTLEQLDSIGLKIETSDTDLLVNGKAAPKDQCYNLRALIKDSHVNYNSGDLELSLTVPQFNLVHHPRGYIDSSLWDAGGTVGFLDYNSNVYSIFNGRSSSDVGSDNSNSYNSNIGLSAGINLGEWRFRKRLNTTWSNSSGMHTQNLYGYAATDITALKSQLTIGDTNTQGSLFDSYALRGVLLASDTRMLPEGIRNYSPIVRGIAETNARVTVTQRGQIIYETVVTPGAFELTDIGTMSYGGDLQMTITESDGRTRIQRIPFSAPPMLLYQGVSRFDFSAGQLNDSSINHNPAIVQGAYHYGLGNTYTLYGGAQVAENYRSVAIGNAFNTPLGGVSMDITHAKSELAGDRRSSGNSYKIDYSKYVGETDTNLTLAAYRYSSGGYYSFREASLDRYGNSNGIDEIDFRTRNRLSLSVSQRVADNMSVNLNSSLYSYWGNQDASQQYSVGFNHSLRFFSYTVSAIRTSNSSNSSNGDNDREYENSYMLAVSIPIGGSGKNKPLFSSLSTMVSHSEAGDTQLQLTTSGSRGDQNELTYGIGTSYGNRNDASSEQSVIGNMGYQSSVGQLGMTASANNNASRQLSVSASGSLVAHQGGVIAGPRLGDAPFAIINAQGAGGAKVFNGRGAKIDSNGYALVPSLTPYRENTIAIDYKDLPETVDILENHKVVVPRMGAMIPVKMKTMTGNPMMLIVRDENKEFLPIGTDLLDADGVSQSIVGQGGMAFIRGWDPVSQPITATLNGGIDKCVIKPDAKIDTATKTVQIIQLEVICLRR
>NZ_CP009712.1|WP_011192708.1|4490547_4491156_+|type-1-fimbrial-protein
MSSSLKNKVAQKPIALLLLLTAVFIAQSQPAQAASSCAGTADCHIQVSFGGEYVEDTCEVSINGASSAESVSLPTLSTSKLNIDGAEAGNQAFQIALKLCPANRSVDLRFTAADSSRNPDVVTGNLQNELGDDYSLSVQVRLSKATGQQMFVGREDSVQEYIIPATGEDITHYFLAGYYAKGTNAVTPGQVKATAGIELVYK
>NZ_CP009712.1|WP_002211575.1|4491261_4491786_+|type-VI-secretion-system-contractile-sheath-small-subunit
MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDERMKAMKPRVAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLASAPKAKQSAVDTPQ
>NZ_CP009712.1|WP_002211574.1|4491809_4493312_+|type-VI-secretion-system-contractile-sheath-large-subunit
MSTQDAKTKQATVASATEYSDFNTLLTKEFKAKSEQTIAAVEGAVKTLAEQALANSVTVSDDAYKSIASIIAEIDRKLSDQINLILHHQEFQSLESAWRGLHYLVNNTETDEKLRLRFLDISKDELRRNMKRYKGVAWDQSPLFKKIYEEEYGQLGGEPYGCLVADYYFDHTAPDVDLLASIGKVAASAHVPFITGAAPSVLQMESWQELSNPRDLTKIFTQNLEYAAWNSLRQSEDSRYIGLAMPRFLSRLPYGINTNPVDAFHFEETTDGADHSKYVWSNAAYAMAVNINRSFKEYGWCTLIRGVESGGVVEGLPCHTFPTDDGGIDMKCPTEIAISDRREAELAKNGFIPLVHRKNTDYAAFIGAQSLQKPAEYYDSDATANANLSARLPYLFACSRFAHYLKCIVRDKIGSFKERDEMQRWLNDWVMNYVDGDPANSSLETKARRPLAAAEVIVEEVEGNPGYYQAKFFLRPHFQLEGLTVSLRMVAKLPSLKDVA
>NZ_CP009712.1|WP_002211573.1|4493644_4494130_+|type-VI-secretion-system-tube-protein-Hcp
MAQDMFIKIDGIEGESLDANHKNEIQVLAWNWDVAQHSNMHSGSGGGSGKASVSDFCFAHYIDKASPNLLSYCLLGKHIKNVQFVLRKAGGDPLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQNAEGHKSGVISANYDVKANMHS
>NZ_CP009712.1|WP_002211572.1|4494403_4494943_+|type-VI-secretion-system-lipoprotein-TssJ
MNKSIRGVYRATQYLFLVLVTLLTIACSSKVQPEKAEKLTVEIATAADINPNDKGVANPLRIALYTLKSTDEFQSSDFFTITEENTPSLKEQMDNVFDRIMLPSETKKIELTLDAGVTAIGIVAAYREIEQAEWKAVIYPLPKKRVDPWYKKMWPGQDQQDPIMKVRVERLSISIKEMD
>NZ_CP009712.1|WP_002211571.1|4494946_4496296_+|type-VI-secretion-system-baseplate-subunit-TssK
MRTNKVVWSEGLFLRPQLFQQQERYLEYYAHKRAATITPFFWGFAQYEIDREALSYGKLVLRSGKGVLPDGTPFDIPGHAELPEPLTITPEHLGKLIYLAVPLRLDNSDETIFDEHDMSSLARFYAYEAALNDTNAIRQGPKPVQLSRLRLRLVSEGEMTESWIGLPLTKVRAIQPDGSVLLHTEDYIPPVTGYAASSLLSEWLTHLNGLVKMRAEMLANRLSNSDGKASASAEIVDYLLLQIFNKYEPILDHLRHIPELPPITLYQELAKFSGELSTFIRTKTRRPRPAPGYDHAKLYASIRPLVDEVHELLNQILVRAGQMIPLETKGNGVWSASVLPNELRSFSNLVLAVHAQLPMDVLQHQFSVQTKISAPQQLHELVRSHLPGLELQRLPVPPRQIPYSAGYVYFELIKNGPFWDKVSNAGAIALHVAGDFPALKMELWGIRDS

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Crispr_ID: NZ_CP009712_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009712_9

4675071-4676061

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

16 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP009712_9

>merge|NZ_CP009712|9|4675071-4676061|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAAAGAGTCGACAAACTGACACATGTACAACTGGTGTTCACTGCCGCACAGGCAGCTTAGAAAGCGATAATATTTTCATTAAGTTTCGCTATCCGGGTTCACTGCCGCACAGGCAGCTTAGAAAATCAACCACACCATCGGCTGTGTGATGCTTAAGTTCACTGCCGCACAGGCAGCTTAGAAATACACCACCCCACAGTTGAACTCTCCGGAGATGTTCACTGCCGCACAGGCAGCTTAGAAAAAGAACCCGTCAGGGATTGACAAGAAAGCAGCGTTCACTGCCGCACAGGCAGCTTAGAAAGAGATTAATTGTATCGTAATAACTAGCCACGTGTTCACTGCCGCACAGGCAGCTTAGAAAATGAAGCGCCAGCGCCACCCATTAATAACGGTATTCACTGCCGCACAGGCAGCTTAGAAAGCCTCGCTGATGGAGGAAAAGGTCGAAAAAACGTTCACTGCCGCACAGGCAGCTTAGAAACGCGCCCATTGCAGCCCCCTCATAGCCCTGACTGTTCACTGCCGCACAGGCAGCTTAGAAACGCGTCTTGCGCATTCAGCCCGATCCCTTTCAGTTCACTGCCGCACAGGCAGCTTAGAAAGTTGATACCTTGTTTAAATTCAACGGTCTTTAGTTCACTGCCGCACAGGCAGCTTAGAAACTATATTCGGCTGGCATAGGATAATCAAAATCAGTTCACTGCCGCACAGGCAGCTTAGAAATGATGAATTGCGTCATCCAGAGCATTGTGATGGTTCACTGCCGCACAGGCAGCTTAGAAAACTGTGGGATCAGATGTATCAGGAGGCTCTGGGTTCACTGCCGCACAGGCAGCTTAGAAACAGCAAGGAACATCGTCAGAAAAAACACTCTAGTTCACTGCCGCACAGGCAGCTTAGAAAGTTACGTGGCAAGTATCCGACCCGACGCTGGGGTTCACTGCCGCACAGGCAATAATCAAA

>NZ_CP009712|9|4|4675071-4676001|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAGTCGACAAACTGACACATGTACAACTGGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCGATAATATTTTCATTAAGTTTCGCTATCCGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCAACCACACCATCGGCTGTGTGATGCTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACACCACCCCACAGTTGAACTCTCCGGAGAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGAACCCGTCAGGGATTGACAAGAAAGCAGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GAGATTAATTGTATCGTAATAACTAGCCACGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGAAGCGCCAGCGCCACCCATTAATAACGGT
ATTCACTGCCGCACAGGCAGCTTAGAAA	GCCTCGCTGATGGAGGAAAAGGTCGAAAAAAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGCGCCCATTGCAGCCCCCTCATAGCCCTGACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGCGTCTTGCGCATTCAGCCCGATCCCTTTCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTGATACCTTGTTTAAATTCAACGGTCTTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTATATTCGGCTGGCATAGGATAATCAAAATCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGATGAATTGCGTCATCCAGAGCATTGTGATG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTGTGGGATCAGATGTATCAGGAGGCTCTGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAGCAAGGAACATCGTCAGAAAAAACACTCTA
GTTCACTGCCGCACAGGCAGCTTAGAAA

>NZ_CP009712|9|7|4675071-4676061|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAGTCGACAAACTGACACATGTACAACTGGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCGATAATATTTTCATTAAGTTTCGCTATCCGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCAACCACACCATCGGCTGTGTGATGCTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACACCACCCCACAGTTGAACTCTCCGGAGAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGAACCCGTCAGGGATTGACAAGAAAGCAGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GAGATTAATTGTATCGTAATAACTAGCCACGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGAAGCGCCAGCGCCACCCATTAATAACGGT
ATTCACTGCCGCACAGGCAGCTTAGAAA	GCCTCGCTGATGGAGGAAAAGGTCGAAAAAAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGCGCCCATTGCAGCCCCCTCATAGCCCTGACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGCGTCTTGCGCATTCAGCCCGATCCCTTTCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTGATACCTTGTTTAAATTCAACGGTCTTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTATATTCGGCTGGCATAGGATAATCAAAATCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGATGAATTGCGTCATCCAGAGCATTGTGATG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTGTGGGATCAGATGTATCAGGAGGCTCTGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAGCAAGGAACATCGTCAGAAAAAACACTCTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTACGTGGCAAGTATCCGACCCGACGCTGGG
GTTCACTGCCGCACAGGCAATAATCAAA

>NZ_CP009712|9|2|4675071-4676061|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAGTCGACAAACTGACACATGTACAACTGGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCGATAATATTTTCATTAAGTTTCGCTATCCGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCAACCACACCATCGGCTGTGTGATGCTTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACACCACCCCACAGTTGAACTCTCCGGAGAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGAACCCGTCAGGGATTGACAAGAAAGCAGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GAGATTAATTGTATCGTAATAACTAGCCACGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGAAGCGCCAGCGCCACCCATTAATAACGGT
ATTCACTGCCGCACAGGCAGCTTAGAAA	GCCTCGCTGATGGAGGAAAAGGTCGAAAAAAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGCGCCCATTGCAGCCCCCTCATAGCCCTGACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGCGTCTTGCGCATTCAGCCCGATCCCTTTCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTGATACCTTGTTTAAATTCAACGGTCTTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTATATTCGGCTGGCATAGGATAATCAAAATCA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGATGAATTGCGTCATCCAGAGCATTGTGATG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTGTGGGATCAGATGTATCAGGAGGCTCTGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAGCAAGGAACATCGTCAGAAAAAACACTCTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTACGTGGCAAGTATCCGACCCGACGCTGGG
GTTCACTGCCGCACAGGCAATAATCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009712.1\|WP_011192624.1\|4683154_4684159_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP009712.1\|WP_011192627.1\|4677397_4680688_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP009712.1\|WP_002210200.1\|4663804_4664845_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NZ_CP009712.1\|WP_011192630.1\|4671655_4672930_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009712.1\|WP_011192634.1\|4665116_4666403_+\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP009712.1\|WP_002211866.1\|4684169_4684724_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|378224
NZ_CP009712.1\|WP_011192623.1\|4684801_4685821_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381305
NZ_CP009712.1\|WP_011192621.1\|4686381_4687740_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP009712.1\|WP_012413791.1\|4676420_4677401_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP009712.1\|WP_002210201.1\|4662399_4663788_-\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312
NZ_CP009712.1\|WP_011192625.1\|4682186_4683137_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NZ_CP009712.1\|WP_011192629.1\|4673488_4674733_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|223740
NZ_CP009712.1\|WP_011192622.1\|4685831_4686335_-\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|224708
NZ_CP009712.1\|WP_002230953.1\|4670501_4671617_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009712.1\|WP_002210197.1\|4667387_4668212_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP009712.1\|WP_011192631.1\|4669440_4670379_+\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102
NZ_CP009712.1\|WP_011192633.1\|4666511_4667387_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP009712.1\|WP_011192626.1\|4680843_4682190_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP009712.1\|WP_002216551.1\|4687863_4688073_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009712.1\|WP_011192632.1\|4668358_4669414_+\|glycosidase	unknown	unknown	gnl\|CDD\|350124

Protein	Function_ID	Function_description	E-value
NZ_CP009712.1\|WP_011192624.1\|4683154_4684159_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP009712.1\|WP_012413791.1\|4676420_4677401_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP009712.1\|WP_002210200.1\|4663804_4664845_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	1.56156e-83
NZ_CP009712.1\|WP_011192634.1\|4665116_4666403_+\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	1.65098e-50
NZ_CP009712.1\|WP_002211866.1\|4684169_4684724_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.71931e-94
NZ_CP009712.1\|WP_011192623.1\|4684801_4685821_-\|aldo/keto-reductase	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	1.53228e-143
NZ_CP009712.1\|WP_011192621.1\|4686381_4687740_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.46299e-50
NZ_CP009712.1\|WP_011192627.1\|4677397_4680688_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP009712.1\|WP_002210201.1\|4662399_4663788_-\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NZ_CP009712.1\|WP_011192625.1\|4682186_4683137_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	3.02239e-153
NZ_CP009712.1\|WP_011192629.1\|4673488_4674733_-\|mechanosensitive-ion-channel	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	3.06937e-32
NZ_CP009712.1\|WP_011192622.1\|4685831_4686335_-\|formaldehyde-activating-enzyme	gnl\|CDD\|224708	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion].	3.6884e-91
NZ_CP009712.1\|WP_002210197.1\|4667387_4668212_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.72016e-69
NZ_CP009712.1\|WP_011192631.1\|4669440_4670379_+\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	4.28073e-173
NZ_CP009712.1\|WP_011192633.1\|4666511_4667387_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.71177e-57
NZ_CP009712.1\|WP_011192626.1\|4680843_4682190_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NZ_CP009712.1\|WP_011192632.1\|4668358_4669414_+\|glycosidase	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	1.45937e-164

>NZ_CP009712.1|WP_011192629.1|4673488_4674733_-|mechanosensitive-ion-channel
MQQRISQWLERLGMEFSNVMSLTMVIGLILLISVMIHLVLHRVVLAALQRRGQQSQRIWQQAITKHKLFQRVALLLQGIIINLQAVLWLQNGSQTQAVIVTAAQVWIMAFALLALFSLLDTLLALLRQSSVAHQLPLRGICQGLKLVAAIFIGIMIVSLLMGRSPLLLLSGLGAMTAVLMLVFKDPILGLVAGIQLSANDMLKIGDWLEMPKYGADGAVTDIGLTTVKVRNWDNTVTTIPTYALISDSFKNWRSMSESGGRRIKRSINIDTTSVHFLSEQEQQRLTLNPLLQHYLSEKSQELNQYNQQIALDLSSPLNGRRLTNIGTLRAYLVAYLRAHLGIHQSMTLMVRQLAPTPEGLPLEVYAFTNTTIWAEYEGIQADIFDHIFAVVSEFDLRIHQTPSGNDMRSMLAKV
>NZ_CP009712.1|WP_011192630.1|4671655_4672930_+|hypothetical-protein
MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRADNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWLPHTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKDTSSPVNGAFLSWQNLWHGYGNSQAYALLVAGNRLGDRDMIKAAFNELDHFHPWLISNGLLNEFTVRQQGEKVTLIEQKKFSQIAYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSTTTVNKNSGAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ
>NZ_CP009712.1|WP_002230953.1|4670501_4671617_+|hypothetical-protein
MKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALVNVNYRVADNVHAGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
>NZ_CP009712.1|WP_011192631.1|4669440_4670379_+|DUF1861-family-protein
MMRHAPPASVAQLFADYQKRTAHNTFSTGRLEFTGVGDKDVYNITAPFTSAGQVVSAGRVEARDSEHSTIVFFREQQGRWAPVENAPTFQLQDPFFTWIEDELIFGGVEINPHPDNPGQLIWHTVFFRGRDIHSLTRFASGPPGMKDIRLCHIQQGRIGVFTRPQGKIGGRGTIGYVEINNLEALTPETITSAELFEQQFNSEEWGGVNETHLLCDGTIGLLSHIACFDQHGRRHYYPGVFIFNPDTKNYTPIKIIAARDNFLPGAAKRPDLVDVIFPGGLIVLPNNGWRLYVGASDAEAHWIDIEDPFSGF
>NZ_CP009712.1|WP_011192632.1|4668358_4669414_+|glycosidase
MIRYSGNPLITPQDITPSHPGFKVECAFNAGITKLGDETIMLIRIAESVIPESEGITVVPLLMEISGHWQVTTRVFKHDDPAYDFSDPRLISDIADPSTVYLTSLSHLRVARSHDGVTFVVDDQPFIFPANGDEAFGCEDARITQIDGAYYINYSAVSAKGICTALAVTQDFTDVKRLGLIFCPDNRDACLFPEKINGKYMTLHRPAPKHFGKPEIWLASSLDLLHWGDHRHLLGTSQDPWDALKLGGGAQMLKTEKGWLQIYHGVDATQRYSLGALLLDLEQPTKILAKSPVPLLQPQAPYELHGFFGNVVFTCGALIENDSLRVYYGAADECMCLAEMPLAQLWQHLSV
>NZ_CP009712.1|WP_002210197.1|4667387_4668212_+|carbohydrate-ABC-transporter-permease
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYVGPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
>NZ_CP009712.1|WP_011192633.1|4666511_4667387_+|sugar-ABC-transporter-permease
MTFLKLKDKQVGSVLAASYLGYTSIFWFYPFIWLAVLSLTEWRFVGIPTFNGLNNFILVMQDPLFWKSMLNVMRFLMYYLPIVFTSSFLFAFGLQKLKYGRTFVALSFLLANVSSGVAYSIVFSKIFSQNGPLNTFLYDWFGFTLPWLTSPDFAMLSIALVVTWKFVGYYGLILFSGLNSIPKEIYSAAELDNTRTIKRLFHITLPMINPQLIMVLVLAITVSFAIFTEPYLITGGGPLNSTTTPMIVMYETAFMKMQPSWAATMSIFIALISFGIILGVRKLLERKVEIV
>NZ_CP009712.1|WP_011192634.1|4665116_4666403_+|carbohydrate-ABC-transporter-substrate-binding-protein
MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWNKQPDKKKVVFSTIPAAGSSEEAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLDGYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRGDLLKEQGFSEVPKTYDEVYALSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLDFMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQQDKPHTFADGKGLVLFSHSKVKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPFFAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQMIEKTAFNTSTPDEALQQSIKEVNAILKP
>NZ_CP009712.1|WP_002210200.1|4663804_4664845_-|LacI-family-DNA-binding-transcriptional-regulator
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESINYHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKNGINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVITTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELTSLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKAAKALLAKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDIQDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>NZ_CP009712.1|WP_002210201.1|4662399_4663788_-|phosphomannomutase/phosphoglucomutase
MEKLTCFKAYDIRGKLGSELNEEIAYRIGRAYCQWLKPAKVVVGGDARATSVELKNALAKGLMDGGADVIDIGMVGTEEVYFATRFYGVDGGIQVTASHNPIDYNGMKLVKKDAQPISGDNGLYEIQRLAQDNHFAPPGVRGQLETQLVREHYVEHLLSYIDLNALLPMKIVVNAGNGAAGPTLDALEAALAKRKVPISFIKINHQPDSSFPNGIPNPMLPENQWSTRQAVCEHQADLGIAWDGDFDRCFFFDHLGNFIEGYYIVGLLAEKFLLTNNMGKATHNTDKIIHDPRLTWNTIDIVQTLNGTAIESKTGHAFIKDAMRHHDAVYGGEMSAHHYFREFGYCDSGMIPWLLVIELLSKKTTSLFSLIESRKAKFPVSGELNFTVSDPKTKIQQIKQFYADSAIHVTGIDGLSMEFEHWRFNLRSSNTEPLVRLNIETRGDVTLLEQKTAQLTQLLYPK
>NZ_CP009712.1|WP_012413791.1|4676420_4677401_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MENAIHSSDLKTILHSKRSNIYYLEYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANDVEVNVSWLTAQSEYRPTEYLHDWVSFWFDDEKRLAAAVAFQRIRIAQIQQHWLSSHIQRESLFPVNHDQLLFILSRFEQNLANCLTSNDLMVQEAVLTKALYKLAANTVNYGDFTRTKRGGGIDLANRFLDHGNYLAYGLAATATWVIGLPHGLSVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMQGEEEQEFRQRCISGFQRTEALDVMIDGIKETAALCSQVPR
>NZ_CP009712.1|WP_011192627.1|4677397_4680688_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCHKRALDETRRILDQFAERKGDRTWQTAITQEGLNTLRKLLRRTARRNSAVACHWIKSNNQSELLWIVGNLRRFNAEGTVPTNTTQRDILRSQDENNWHSVETIALLAGIAGLFHDFGKANVLFQQGLQGQGKTYQPYRHEWVSLRLFQAFVEQKNDIQWLTALSQINPADETALMSNLVKDGLDDYTNPLVALPPLAKTIAWLILSHHRLPVYPSKDYHRPPKVEEIDDWLHQQLMPVWNSTNMDSGDWREKDKLDVWRFPHGTPLQSAEWCKKAQKFAKRALRQPSLVNDGHLNQRFTSHMARLALMLADHHYSSLPATPGWQDKNYQVFANTHNKMRDVNAHSKTIEMKQRLDEHNIGVGQNALLLGRSLPHIRKTLPAITRHKGFKQRSVQEKYRWQDKAFDLAVTLRERSLQQGFFGVNMASIGCGKTFANARIMYGLSDEKQGCRFSVALGLRTLTLQTGTALQQKLTLQKDDLAVLIGSQSVLQLYQLNNDKLEPRGTGSQSADKFFSEHQYVSYDGSLDDGRLSTWLSNNDRLKRLLCAPVLVCTIDHLIPATESLRGGKQIAPMLRLLTSDLVLDEPDDFDRNDLPALCRLVNWAGMLGSRVLLSSATLPPALVQALFNAYRAGRADYQQASGQPDTPVNICCAWFDEHGVAQQDIQQSKDFIQHHGDFITRRVGKLSTAEVLRRAELIPVSSASVKNGSVLDAMAAVMRDSMLRLHQAHHQTHPSEKTVSVGVVRMANIDPLVAIAQRLYAMAAPENYRIHYCVYHSQHPLAVRSAIERRLDVTLTRYQPNALWQVAEIEHALQHHPEQHHLFVVLATSVVEVGRDHDYDWALAEPSSMRSFIQLAGRVQRHRQVAPQMANMHILQKNFKALTQKDPAIPVYCKPGFETTRCRLNTHDLDKLLLPSQYKVINAISRIQERTKLEPRDNFVDLEHLSLRLILQGSAEPLKYYAALWWRKQATWSGEQQRCTPFRQSSPDEQHNLWIDDEADKPVFKRLDSDQIEWKVSDGFQDVELTLAAGNSAWIDTDCLRIYQWLAESLNKELNEVSRQFGEVRLLSKKDGERWHYHPLLGVFGALD
>NZ_CP009712.1|WP_011192626.1|4680843_4682190_+|type-I-F-CRISPR-associated-protein-Csy1
MEEKGLTAFIVSYIKSREQPKLEAFDKEAEKRLAGLTQAEDIALAQQEIAQQRRELIARYEVRNWLTDAANRAGQISLVTHALKFTHSDAKGSSVFNLPAAENDAIYLSSATLGQPAVDAVGNAAALDVAKLLQTEHNGDSLLACLNRADNSPLAALAENPQQLALWVEGFKQALVDKQLTSHKLAKQFYFPVGLDQYHLLSPLFSSSLAQAMHQRIAEARFSDQSKEAKVAHKAGKWHSEARVIYLKTAVQNIGGTKPQNISYLNSVRGGKVWLLPCGAPPWKNIQKPPIKYRSIFHDRSEFTVLARNNLWQMQQYLLGVKPLSNTMDIRAVRLACSDEIIDILFNYVAEIQNLDGTNGWSDAEDCKLKRSEQLWLDPNRAMDDPVFKLEREKEDWKQEVSQDFGYWLNRWLQHDELVFGYVEQREWSSLFKQRLREFEQGSLETWS
>NZ_CP009712.1|WP_011192625.1|4682186_4683137_+|type-I-F-CRISPR-associated-protein-Csy2
MSSLIVLHQVRVENANAIAGLTYGFPAITHFLGYSHALSRKLQSSHGLTLRGCAVICHHQQVHAYSSGRDYVFSLTRNPLTKEAKTAAFNEEGRMHMTVSLVIECDGTIANGDDGANALEKHLASLCLTQRLAGGTITNIRRVKVINYPETEVATRRLLCHLLPGFALLDRSELLAEHLNQLRQTNPQTEMLDAWLDFSALKIQAIPPQSDTPVESGAPAPWGYVGKPAAGYLVPIVTGYRAISPLYAPGEVDKTRDPHTPFRFVESLYGIGEWRGLHRITDLRQLLWGYHQEGDNYLCRCALPASVDTYLLNDEE
>NZ_CP009712.1|WP_011192624.1|4683154_4684159_+|type-I-F-CRISPR-associated-protein-Csy3
MAKATIKTASVLAFERKLSNSDAMMYAGNWGQTDNWQPIIIKEKAVRGTISNRLKNALASDPVKLDAEIQKANLQRVDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDIKVCITSQTKSYQFDSNEFSLRQFSQPSKELTALAQEIEQGLAGNGFAFFTVDAFVRLGNGQEVFPSQELVLDSNSKKSKVLYQIDGIAALHSQKVGNALRTIDDWYPDATELALGPIAVEPYGSVTSRGKAYRQPKQKMDFYTLLDNWVTKGTVPAVEQQHYVMATLIRGGVFGEKGE
>NZ_CP009712.1|WP_002211866.1|4684169_4684724_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIRVLPDPEFSAQTLLEALFAKLHRALVATIPGRVGVSFPTAGKTLGSQLRLHGSRGDLLELQSAGWLKGLQDYCECSEILPVPADVKHRTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPDSHDKRCDLPFLRLKSRSSEQYFLLFIEQGTLQASATTGEFSAYGLSVNATIPWF
>NZ_CP009712.1|WP_011192623.1|4684801_4685821_-|aldo/keto-reductase
MDYIKLGHCGLQVSRLCLGTMNMGSKQWKPWVFDKAESTPLIKHALDCGINFIDLADFYSAGVGEEVVGRIVKNLMSRDELVLTTKVGYPIGHGPNNQGHSRKHIMASIDASLKRLGTDYIDIYMLHYFDINTPVEETWSAMNDIIHSGKARYTGVSTMFTWQLSKILWCCERNGFAKPINMQLQLNCAYREEEREMIPQCRDQGLGISAFSPLARGLLSCDFSSVRNKTDFFTQEMYADVTSLNIAQSVERVAKNRGITPAQVAQAWVLNHPGIDCMLVGADTIEQINSAVTALRISLNAEENFELERNYTPCDVINDYTAGQRIAREARPPSGIFAP
>NZ_CP009712.1|WP_011192622.1|4685831_4686335_-|formaldehyde-activating-enzyme
MQMYIGEGFAGNGVNAAHINIMIGPRDGVVGQAFAASLASPSQGHCPFIVVIKPNVAAKPMTLYVNKAEIRSELHGRATWGASQAAVAKAVAEALLANLFPPEAEDDWCIITANWVNIDCDDIDEVYRNNYRACTTALHAAMAKTPKRDQLTHALTQLSNPFFTPKA
>NZ_CP009712.1|WP_011192621.1|4686381_4687740_-|MFS-transporter
MQTLPSEKIRMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIKLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYSVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWLMGKGREDDAMAIVHKYFGPNVTLIDEEPATSTRRFLSLFGRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN
>NZ_CP009712.1|WP_002216551.1|4687863_4688073_+|hypothetical-protein
MVIGDLLTETDRLFQKRTAAMDDLFSSPGPVRLILFVMAMCQPKYKAASAFYAYPSEKKVRDPPLNSYK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP009712_7	7.2\|3482890\|53\|NZ_CP009712\|PILER-CR	3482890-3482942	53	NZ_CP009712.1	3483003-3483055	2	0.962

1. spacer 7.2|3482890|53|NZ_CP009712|PILER-CR matches to position: 3483003-3483055, mismatch: 2, identity: 0.962

gtcaacgccactcatgccacaaaatcccgcttcggcgggtttttgctttggag	CRISPR spacer
gtcaacgccactcatgccacaaaatcccgctttggcgggtttttgctttgcag	Protospacer
********************************.***************** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009712_9	9.4\|4675280\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675280-4675311	32	MK733259	Yersinia phage YeP1, complete genome	32012-32043	0	1.0
NZ_CP009712_9	9.4\|4675280\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675280-4675311	32	MK733261	Yersinia phage YeP3, complete genome	32272-32303	0	1.0
NZ_CP009712_9	9.4\|4675280\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675280-4675311	32	MK733260	Yersinia phage YeP2, complete genome	32272-32303	0	1.0
NZ_CP009712_3	3.1\|1612072\|31\|NZ_CP009712\|PILER-CR	1612072-1612102	31	NZ_CP028488	Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence	94279-94309	1	0.968
NZ_CP009712_3	3.1\|1612072\|31\|NZ_CP009712\|PILER-CR	1612072-1612102	31	NZ_CP054046	Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence	5758-5788	2	0.935
NZ_CP009712_3	3.1\|1612072\|31\|NZ_CP009712\|PILER-CR	1612072-1612102	31	NZ_CP032488	Yersinia hibernica strain CFS1934 plasmid pCFS1934, complete sequence	55937-55967	2	0.935
NZ_CP009712_3	3.1\|1612072\|31\|NZ_CP009712\|PILER-CR	1612072-1612102	31	NZ_CP025802	Yersinia ruckeri strain SC09 plasmid pLT, complete sequence	50213-50243	3	0.903
NZ_CP009712_3	3.1\|1612072\|31\|NZ_CP009712\|PILER-CR	1612072-1612102	31	NZ_LN681230	Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence	40349-40379	3	0.903
NZ_CP009712_3	3.1\|1612072\|31\|NZ_CP009712\|PILER-CR	1612072-1612102	31	NZ_CP032236	Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence	10443-10473	3	0.903
NZ_CP009712_3	3.1\|1612072\|31\|NZ_CP009712\|PILER-CR	1612072-1612102	31	NZ_CP054047	Yersinia massiliensis strain 2011N-4075 plasmid unnamed2, complete sequence	45319-45349	3	0.903
NZ_CP009712_9	9.8\|4675520\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675520-4675551	32	NZ_CP047261	Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326F, complete sequence	103286-103317	7	0.781
NZ_CP009712_9	9.13\|4675822\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675822-4675853	32	MN908687	Gordonia phage Skog, complete genome	54547-54578	7	0.781
NZ_CP009712_4	4.1\|2530581\|33\|NZ_CP009712\|CRISPRCasFinder	2530581-2530613	33	NZ_KX274135	Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence	60674-60706	8	0.758
NZ_CP009712_9	9.5\|4675340\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675340-4675371	32	NC_047815	Erwinia phage vB_EamM_Yoloswag, complete genome	191666-191697	8	0.75
NZ_CP009712_9	9.8\|4675520\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675520-4675551	32	NZ_MK851048	Morganella morganii strain MM1L5 plasmid pMM1L5, complete sequence	38133-38164	8	0.75
NZ_CP009712_9	9.8\|4675520\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675520-4675551	32	NZ_MK851047	Actinobacillus pleuropneumoniae strain APP1L5 plasmid pAPP1L5, complete sequence	55096-55127	8	0.75
NZ_CP009712_9	9.8\|4675520\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675520-4675551	32	NZ_CP046258	Gordonia sp. 135 plasmid pG135, complete sequence	144061-144092	8	0.75
NZ_CP009712_9	9.8\|4675520\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675520-4675551	32	NC_018583	Gordonia sp. KTR9 plasmid pGKT3, complete sequence	16688-16719	8	0.75
NZ_CP009712_9	9.8\|4675520\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675520-4675551	32	NZ_CP047236	Gordonia sp. JH63 plasmid pJH63-1, complete sequence	141055-141086	8	0.75
NZ_CP009712_9	9.8\|4675520\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675520-4675551	32	MK002701	Halobacterium phage phiH variant phiH1, complete genome	29544-29575	8	0.75
NZ_CP009712_9	9.9\|4675580\|33\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675580-4675612	33	NZ_CP036488	Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence	493743-493775	8	0.758
NZ_CP009712_9	9.9\|4675580\|33\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675580-4675612	33	NZ_CP032297	Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence	71711-71743	8	0.758
NZ_CP009712_9	9.9\|4675580\|33\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675580-4675612	33	NC_017060	Rahnella aquatilis HX2 plasmid PRA1, complete sequence	9432-9464	8	0.758
NZ_CP009712_9	9.9\|4675580\|33\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675580-4675612	33	NC_015062	Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence	9277-9309	8	0.758
NZ_CP009712_9	9.9\|4675580\|33\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675580-4675612	33	NZ_CP034838	Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence	9372-9404	8	0.758
NZ_CP009712_9	9.9\|4675580\|33\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675580-4675612	33	NZ_CP034839	Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence	9372-9404	8	0.758
NZ_CP009712_9	9.9\|4675580\|33\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675580-4675612	33	NZ_CP034837	Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence	9277-9309	8	0.758
NZ_CP009712_9	9.13\|4675822\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675822-4675853	32	NZ_CP048351	Raoultella ornithinolytica strain 23 plasmid p23_B, complete sequence	4168-4199	8	0.75
NZ_CP009712_9	9.13\|4675822\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675822-4675853	32	NZ_CP026272	Klebsiella oxytoca strain KONIH4 plasmid pKPC-f607, complete sequence	92695-92726	8	0.75
NZ_CP009712_9	9.13\|4675822\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675822-4675853	32	NZ_CP007735	Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKPN-a41, complete sequence	68980-69011	8	0.75
NZ_CP009712_9	9.13\|4675822\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675822-4675853	32	MF403007	Agrobacterium phage Atu_ph04, complete genome	115577-115608	8	0.75
NZ_CP009712_9	9.13\|4675822\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675822-4675853	32	NZ_CP049247	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence	41586-41617	8	0.75
NZ_CP009712_9	9.13\|4675822\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675822-4675853	32	NZ_CP049252	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed5, complete sequence	24941-24972	8	0.75
NZ_CP009712_9	9.3\|4675220\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675220-4675251	32	NZ_CP032156	Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence	214799-214830	9	0.719
NZ_CP009712_9	9.8\|4675520\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675520-4675551	32	NZ_CP017672	Providencia rettgeri strain RB151 plasmid pRB151-NDM, complete sequence	101627-101658	9	0.719
NZ_CP009712_9	9.10\|4675641\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675641-4675672	32	NZ_CP022420	Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-5, complete sequence	118938-118969	9	0.719
NZ_CP009712_9	9.10\|4675641\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675641-4675672	32	NZ_CP016367	Phaeobacter porticola strain P97 plasmid pP97_c, complete sequence	27757-27788	9	0.719
NZ_CP009712_9	9.14\|4675882\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675882-4675913	32	NZ_CP023550	Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence	148834-148865	9	0.719
NZ_CP009712_9	9.15\|4675942\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675942-4675973	32	NZ_CP032703	Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence	47746-47777	9	0.719
NZ_CP009712_9	9.5\|4675340\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675340-4675371	32	MH051335	Escherichia phage vB_EcoM-Ro157lw, complete genome	26006-26037	10	0.688
NZ_CP009712_9	9.5\|4675340\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675340-4675371	32	JX128258	Escherichia phage ECML-117, complete genome	31049-31080	10	0.688
NZ_CP009712_9	9.5\|4675340\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675340-4675371	32	MK903282	Escherichia phage Mansfield, complete genome	26213-26244	10	0.688
NZ_CP009712_9	9.5\|4675340\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675340-4675371	32	MT446408	UNVERIFIED: Escherichia virus TH35, complete genome	29763-29794	10	0.688
NZ_CP009712_9	9.5\|4675340\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675340-4675371	32	NC_048073	Escherichia phage FEC19, complete genome	44338-44369	10	0.688
NZ_CP009712_9	9.8\|4675520\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675520-4675551	32	NC_022995	Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence	196816-196847	10	0.688
NZ_CP009712_9	9.11\|4675701\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675701-4675732	32	CP033541	Acinetobacter pittii strain 2014S06-099 plasmid p2014S06-099-1, complete sequence	100094-100125	10	0.688
NZ_CP009712_9	9.11\|4675701\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675701-4675732	32	MG602477	Bacillus phage BCP01, complete genome	141195-141226	10	0.688
NZ_CP009712_9	9.11\|4675701\|32\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675701-4675732	32	KX495186	Bacillus phage PK16, complete genome	37124-37155	10	0.688
NZ_CP009712_9	9.2\|4675159\|33\|NZ_CP009712\|PILER-CR,CRISPRCasFinder,CRT	4675159-4675191	33	NC_015903	Borreliella bissettii DN127 plasmid cp32-11, complete sequence	27059-27091	11	0.667

1. spacer 9.4|4675280|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to MK733259 (Yersinia phage YeP1, complete genome) position: , mismatch: 0, identity: 1.0

tacaccaccccacagttgaactctccggagat	CRISPR spacer
tacaccaccccacagttgaactctccggagat	Protospacer
********************************

2. spacer 9.4|4675280|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to MK733261 (Yersinia phage YeP3, complete genome) position: , mismatch: 0, identity: 1.0

tacaccaccccacagttgaactctccggagat	CRISPR spacer
tacaccaccccacagttgaactctccggagat	Protospacer
********************************

3. spacer 9.4|4675280|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to MK733260 (Yersinia phage YeP2, complete genome) position: , mismatch: 0, identity: 1.0

tacaccaccccacagttgaactctccggagat	CRISPR spacer
tacaccaccccacagttgaactctccggagat	Protospacer
********************************

4. spacer 3.1|1612072|31|NZ_CP009712|PILER-CR matches to NZ_CP028488 (Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.968

gcattgccgttgaagagatccgtcgttggct	CRISPR spacer
gcattgccgttgaagagatccgtcattggct	Protospacer
************************.******

5. spacer 3.1|1612072|31|NZ_CP009712|PILER-CR matches to NZ_CP054046 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.935

gcattgccgttgaagagatccgtcgttggct	CRISPR spacer
gcattgccgttgaagagatccgccattggct	Protospacer
**********************.*.******

6. spacer 3.1|1612072|31|NZ_CP009712|PILER-CR matches to NZ_CP032488 (Yersinia hibernica strain CFS1934 plasmid pCFS1934, complete sequence) position: , mismatch: 2, identity: 0.935

gcattgccgttgaagagatccgtcgttggct	CRISPR spacer
gcattgccgttgaagagatccgccattggct	Protospacer
**********************.*.******

7. spacer 3.1|1612072|31|NZ_CP009712|PILER-CR matches to NZ_CP025802 (Yersinia ruckeri strain SC09 plasmid pLT, complete sequence) position: , mismatch: 3, identity: 0.903

gcattgccgttgaagagatccgtcgttggct	CRISPR spacer
ggatcgccgttgaagagatccgtcattggct	Protospacer
* **.*******************.******

8. spacer 3.1|1612072|31|NZ_CP009712|PILER-CR matches to NZ_LN681230 (Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence) position: , mismatch: 3, identity: 0.903

gcattgccgttgaagagatccgtcgttggct	CRISPR spacer
ggatcgccgttgaagagatccgtcattggct	Protospacer
* **.*******************.******

9. spacer 3.1|1612072|31|NZ_CP009712|PILER-CR matches to NZ_CP032236 (Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence) position: , mismatch: 3, identity: 0.903

gcattgccgttgaagagatccgtcgttggct	CRISPR spacer
ggatcgccgttgaagagatccgtcattggct	Protospacer
* **.*******************.******

10. spacer 3.1|1612072|31|NZ_CP009712|PILER-CR matches to NZ_CP054047 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.903

gcattgccgttgaagagatccgtcgttggct	CRISPR spacer
gtattgctgttgaagagatccgtcattggct	Protospacer
*.*****.****************.******

11. spacer 9.8|4675520|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047261 (Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326F, complete sequence) position: , mismatch: 7, identity: 0.781

-gcctcgctgatggaggaaaaggtcgaaaaaac	CRISPR spacer
tgggtcgtc-atggatgaaaaggtcaaaaaaac	Protospacer
 *  ***.. ***** *********.*******

12. spacer 9.13|4675822|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to MN908687 (Gordonia phage Skog, complete genome) position: , mismatch: 7, identity: 0.781

tgatgaattgcgtcatccagagcattgtgatg	CRISPR spacer
agatgccgggcgtcctccagcgcattgtgatg	Protospacer
 ****    ***** ***** ***********

13. spacer 4.1|2530581|33|NZ_CP009712|CRISPRCasFinder matches to NZ_KX274135 (Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence) position: , mismatch: 8, identity: 0.758

ctttggcatggggttatcagtaaaacgcgtaat	CRISPR spacer
caatggcatgaggttatcagcaaaacgattttt	Protospacer
*  *******.*********.******  *  *

14. spacer 9.5|4675340|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NC_047815 (Erwinia phage vB_EamM_Yoloswag, complete genome) position: , mismatch: 8, identity: 0.75

aagaacccgtcagggattgacaagaaagcagc	CRISPR spacer
gaacctcagtcagagattgacaagaaagaagc	Protospacer
.*.  .* *****.************** ***

15. spacer 9.8|4675520|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK851048 (Morganella morganii strain MM1L5 plasmid pMM1L5, complete sequence) position: , mismatch: 8, identity: 0.75

gcctcgctgatggaggaaaaggtcgaaaaaac	CRISPR spacer
agtaacctgatggaggagaaggtcgagaaaac	Protospacer
. .   ***********.********.*****

16. spacer 9.8|4675520|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK851047 (Actinobacillus pleuropneumoniae strain APP1L5 plasmid pAPP1L5, complete sequence) position: , mismatch: 8, identity: 0.75

gcctcgctgatggaggaaaaggtcgaaaaaac	CRISPR spacer
agtaacctgatggaggagaaggtcgagaaaac	Protospacer
. .   ***********.********.*****

17. spacer 9.8|4675520|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046258 (Gordonia sp. 135 plasmid pG135, complete sequence) position: , mismatch: 8, identity: 0.75

gcctcgctgatggaggaaaaggtcgaaaaaac	CRISPR spacer
gcctcgctgatggagggcaaggtcaacctcaa	Protospacer
****************. ******.*    *

18. spacer 9.8|4675520|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NC_018583 (Gordonia sp. KTR9 plasmid pGKT3, complete sequence) position: , mismatch: 8, identity: 0.75

gcctcgctgatggaggaaaaggtcgaaaaaac	CRISPR spacer
gcctcgctgatggagggcaaggtcaacctcaa	Protospacer
****************. ******.*    *

19. spacer 9.8|4675520|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047236 (Gordonia sp. JH63 plasmid pJH63-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcctcgctgatggaggaaaaggtcgaaaaaac	CRISPR spacer
gcctcgctgatggagggcaaggtcaacctcaa	Protospacer
****************. ******.*    *

20. spacer 9.8|4675520|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to MK002701 (Halobacterium phage phiH variant phiH1, complete genome) position: , mismatch: 8, identity: 0.75

gcctcgctgatggaggaaaaggtcgaaaaaac	CRISPR spacer
tcatcgctgatggaccaaaaggtcgagataca	Protospacer
 * ***********  **********.* *

21. spacer 9.9|4675580|33|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036488 (Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence) position: , mismatch: 8, identity: 0.758

cgcgcccattgcagccccctcatagccctgact	CRISPR spacer
tgcagtcattgcatcccgctcatagccctgata	Protospacer
.**. .******* *** *************.

22. spacer 9.9|4675580|33|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 8, identity: 0.758

cgcgcccattgcagccccctcatagccctgact	CRISPR spacer
tgcagtcattgcatcccgctcatagccctgata	Protospacer
.**. .******* *** *************.

23. spacer 9.9|4675580|33|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NC_017060 (Rahnella aquatilis HX2 plasmid PRA1, complete sequence) position: , mismatch: 8, identity: 0.758

cgcgcccattgcagccccctcatagccctgact	CRISPR spacer
tgcagtcattgcatcccgctcatagccctgata	Protospacer
.**. .******* *** *************.

24. spacer 9.9|4675580|33|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NC_015062 (Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence) position: , mismatch: 8, identity: 0.758

cgcgcccattgcagccccctcatagccctgact	CRISPR spacer
tgcagtcattgcatcccgctcatagccctgata	Protospacer
.**. .******* *** *************.

25. spacer 9.9|4675580|33|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034838 (Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence) position: , mismatch: 8, identity: 0.758

cgcgcccattgcagccccctcatagccctgact	CRISPR spacer
tgcagtcattgcatcccgctcatagccctgata	Protospacer
.**. .******* *** *************.

26. spacer 9.9|4675580|33|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034839 (Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence) position: , mismatch: 8, identity: 0.758

cgcgcccattgcagccccctcatagccctgact	CRISPR spacer
tgcagtcattgcatcccgctcatagccctgata	Protospacer
.**. .******* *** *************.

27. spacer 9.9|4675580|33|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 8, identity: 0.758

cgcgcccattgcagccccctcatagccctgact	CRISPR spacer
tgcagtcattgcatcccgctcatagccctgata	Protospacer
.**. .******* *** *************.

28. spacer 9.13|4675822|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048351 (Raoultella ornithinolytica strain 23 plasmid p23_B, complete sequence) position: , mismatch: 8, identity: 0.75

tgatgaattgcgtcatccagagcattgtgatg	CRISPR spacer
acatgaattgcttcatacagagcattaaaacg	Protospacer
  ********* **** *********. .*.*

29. spacer 9.13|4675822|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026272 (Klebsiella oxytoca strain KONIH4 plasmid pKPC-f607, complete sequence) position: , mismatch: 8, identity: 0.75

tgatgaattgcgtcatccagagcattgtgatg	CRISPR spacer
acatgaattgcttcatacagagcattaaaacg	Protospacer
  ********* **** *********. .*.*

30. spacer 9.13|4675822|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007735 (Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKPN-a41, complete sequence) position: , mismatch: 8, identity: 0.75

tgatgaattgcgtcatccagagcattgtgatg	CRISPR spacer
acatgaattgcttcatacagagcattaaaacg	Protospacer
  ********* **** *********. .*.*

31. spacer 9.13|4675822|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to MF403007 (Agrobacterium phage Atu_ph04, complete genome) position: , mismatch: 8, identity: 0.75

-tgatgaattgcgtcatccagagcattgtgatg	CRISPR spacer
ccggccca-tgcgtcgtcgagagcattgtgatg	Protospacer
 .*..  * ******.** **************

32. spacer 9.13|4675822|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049247 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tgatgaattgcgtcatccagagcattgtgatg	CRISPR spacer
tgagcttttgcgtcatcgagcgcattgtgagc	Protospacer
***    ********** ** *********

33. spacer 9.13|4675822|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049252 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

tgatgaattgcgtcatccagagcattgtgatg	CRISPR spacer
tgagcttttgcgtcatcgagcgcattgtgagc	Protospacer
***    ********** ** *********

34. spacer 9.3|4675220|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032156 (Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence) position: , mismatch: 9, identity: 0.719

atcaaccacaccatcggctgtgtgatgcttaa	CRISPR spacer
atccgccacaccatcggctgtgtacatcgttg	Protospacer
*** .******************.   * * .

35. spacer 9.8|4675520|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017672 (Providencia rettgeri strain RB151 plasmid pRB151-NDM, complete sequence) position: , mismatch: 9, identity: 0.719

gcctcgctgatggaggaaaaggtcgaaaaaac	CRISPR spacer
agtaacttgatggaagaaaaagtcgaaaaaac	Protospacer
. .   .*******.*****.***********

36. spacer 9.10|4675641|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022420 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-5, complete sequence) position: , mismatch: 9, identity: 0.719

cgcgtcttgcgcattcagcccgatccctttca	CRISPR spacer
taccgcatgagcattcagcccgatctctttgg	Protospacer
..*  * ** ***************.**** .

37. spacer 9.10|4675641|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016367 (Phaeobacter porticola strain P97 plasmid pP97_c, complete sequence) position: , mismatch: 9, identity: 0.719

cgcgtcttgcgcattcagcccgatccctttca	CRISPR spacer
taccgcatgagcattcagcccgatctctttgg	Protospacer
..*  * ** ***************.**** .

38. spacer 9.14|4675882|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023550 (Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

actgtgggatcagatgtatcaggaggctctgg	CRISPR spacer
gtcccgcgatcagatggatcagcaggctctcg	Protospacer
... .* ********* ***** ******* *

39. spacer 9.15|4675942|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032703 (Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cagcaaggaacatcgtcagaaaaaacactcta	CRISPR spacer
gaaagcagaacgtcggcagaaaaaacactctg	Protospacer
 *. . .****.*** ***************.

40. spacer 9.5|4675340|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to MH051335 (Escherichia phage vB_EcoM-Ro157lw, complete genome) position: , mismatch: 10, identity: 0.688

aagaacccgtcagggattgacaagaaagcagc	CRISPR spacer
tcgttatggtcagagattgaccagaaagcaga	Protospacer
  *   . *****.******* *********

41. spacer 9.5|4675340|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to JX128258 (Escherichia phage ECML-117, complete genome) position: , mismatch: 10, identity: 0.688

aagaacccgtcagggattgacaagaaagcagc	CRISPR spacer
tcgttatggtcagagattgaccagaaagcaga	Protospacer
  *   . *****.******* *********

42. spacer 9.5|4675340|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to MK903282 (Escherichia phage Mansfield, complete genome) position: , mismatch: 10, identity: 0.688

aagaacccgtcagggattgacaagaaagcagc	CRISPR spacer
tcgttatggtcagagattgaccagaaagcaga	Protospacer
  *   . *****.******* *********

43. spacer 9.5|4675340|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to MT446408 (UNVERIFIED: Escherichia virus TH35, complete genome) position: , mismatch: 10, identity: 0.688

aagaacccgtcagggattgacaagaaagcagc	CRISPR spacer
tcgttatggtcagagattgaccagaaagcaga	Protospacer
  *   . *****.******* *********

44. spacer 9.5|4675340|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NC_048073 (Escherichia phage FEC19, complete genome) position: , mismatch: 10, identity: 0.688

aagaacccgtcagggattgacaagaaagcagc	CRISPR spacer
tcgttatggtcagagattgaccagaaagcaga	Protospacer
  *   . *****.******* *********

45. spacer 9.8|4675520|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NC_022995 (Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

gcctcgctgatggaggaaaaggtcgaaaaaac	CRISPR spacer
acctcgcacatggaggaaaaggtcgtcttgca	Protospacer
.******  ****************    .

46. spacer 9.11|4675701|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to CP033541 (Acinetobacter pittii strain 2014S06-099 plasmid p2014S06-099-1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgataccttgtttaaattcaacggtcttta	CRISPR spacer
gcagatactttgtttaaatttaacggctcagc	Protospacer
*. *****.***********.*****...

47. spacer 9.11|4675701|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 10, identity: 0.688

gttgataccttgtttaaattcaacggtcttta	CRISPR spacer
aggaataccatgtttaaattcatcggttgtgg	Protospacer
.  .***** ************ ****. * .

48. spacer 9.11|4675701|32|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 10, identity: 0.688

gttgataccttgtttaaattcaacggtcttta	CRISPR spacer
aggaataccatgtttaaattcatcggttgtgg	Protospacer
.  .***** ************ ****. * .

49. spacer 9.2|4675159|33|NZ_CP009712|PILER-CR,CRISPRCasFinder,CRT matches to NC_015903 (Borreliella bissettii DN127 plasmid cp32-11, complete sequence) position: , mismatch: 11, identity: 0.667

gcgataatattttcattaagtttcgctatccgg	CRISPR spacer
ttatcaatattttcattaattttctctatttta	Protospacer
 .. .************** **** ****.. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

659508 : 799311

164

Erwinia_phage(25.44%)

capsid,holin,head,transposase,integrase,tail,portal,lysis,plate,terminase

attL 650847:650863|attR 799495:799617

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
650847:650863	attL	NA	NA	NA	NA
WP_032467055.1\|659508_659763_+\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	3.1e-17	61.1
650847:650863	attL	NA	NA	NA	NA
WP_002213212.1\|659759_660059_+	lysozyme	A0A218M4K8	Erwinia_phage	2.6e-23	64.9
WP_002215413.1\|660075_660363_+	hypothetical protein	NA	NA	NA	NA
WP_011192343.1\|664091_664649_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011192342.1\|664623_665790_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_012413697.1\|665786_666584_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_011192340.1\|666583_667438_-	hypothetical protein	NA	NA	NA	NA
WP_011192339.1\|667425_668151_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_011192338.1\|668140_669874_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012413696.1\|669870_671139_-	MFS transporter	NA	NA	NA	NA
WP_086025313.1\|672095_673608_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_011192335.1\|673828_674173_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_144405787.1\|674234_674441_+	hypothetical protein	NA	NA	NA	NA
WP_002213223.1\|674470_674653_-	hypothetical protein	NA	NA	NA	NA
WP_002215401.1\|675777_676005_-	replicative DNA helicase	A0A192Y673	Salmonella_phage	2.1e-12	57.7
WP_012413690.1\|676563_676788_+\|integrase	integrase	K7PLZ2	Enterobacterial_phage	6.6e-19	76.8
WP_011192331.1\|678101_678482_-	hypothetical protein	NA	NA	NA	NA
WP_011192329.1\|678990_680688_-	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	9.0e-76	62.5
WP_011192328.1\|680708_681077_-	helix-turn-helix domain-containing protein	A0A2H4JFL3	uncultured_Caudovirales_phage	5.2e-13	39.8
WP_012304171.1\|681137_681329_+	hypothetical protein	NA	NA	NA	NA
WP_011192327.1\|681341_681545_+	hypothetical protein	NA	NA	NA	NA
WP_024063347.1\|681556_681763_+	hypothetical protein	NA	NA	NA	NA
WP_011192326.1\|681759_682074_+	hypothetical protein	NA	NA	NA	NA
WP_011192325.1\|682215_682476_+	hypothetical protein	NA	NA	NA	NA
WP_012304177.1\|682506_682812_+	hypothetical protein	NA	NA	NA	NA
WP_011192323.1\|682894_683662_+	hypothetical protein	K7ZRM8	Xanthomonas_citri_phage	1.9e-09	49.3
WP_011192322.1\|683718_684372_+	3'-5' exonuclease	A0A1D9C9N8	Salinivibrio_phage	3.0e-56	62.9
WP_011192321.1\|684368_685187_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S6L011	Salmonella_phage	1.5e-76	55.9
WP_011192320.1\|685275_687831_+	replication endonuclease	E5G6L9	Salmonella_phage	8.9e-128	37.9
WP_012413686.1\|687811_688042_+	hypothetical protein	NA	NA	NA	NA
WP_011192319.1\|688038_688383_+	hypothetical protein	NA	NA	NA	NA
WP_041175454.1\|689064_690105_-\|portal	phage portal protein	A0A077K9Q8	Ralstonia_phage	7.8e-131	64.3
WP_011192317.1\|690104_691868_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	3.1e-228	63.6
WP_011192316.1\|692038_692854_+\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	9.6e-76	71.1
WP_011192315.1\|692890_693946_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.1e-123	62.8
WP_011192314.1\|693952_694606_+	hypothetical protein	F1BUQ7	Erwinia_phage	1.7e-43	46.8
WP_011192313.1\|694839_695331_+\|head	head completion/stabilization protein	A0A1S5NNA6	Burkholderia_phage	7.9e-33	48.4
WP_011192312.1\|695330_695534_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.8e-23	70.1
WP_011192311.1\|695563_695950_+\|holin	holin	NA	NA	NA	NA
WP_011192310.1\|695936_696332_+	M15 family metallopeptidase	A9DET4	Yersinia_phage	3.5e-47	71.8
WP_011192309.1\|696336_696762_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	9.2e-22	48.2
WP_072083431.1\|696649_696874_+	hypothetical protein	NA	NA	NA	NA
WP_011192308.1\|696860_697328_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.8e-42	57.2
WP_011192307.1\|697324_697771_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	7.7e-35	50.7
WP_012304193.1\|698102_698804_+	hypothetical protein	NA	NA	NA	NA
WP_011192305.1\|699134_699770_+\|plate	phage baseplate assembly protein V	O80314	Escherichia_phage	1.3e-64	62.0
WP_011192304.1\|699766_700120_+\|plate	baseplate assembly protein	A0A218M4K8	Erwinia_phage	2.4e-31	59.3
WP_011192303.1\|700122_701031_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	1.3e-118	73.2
WP_011192302.1\|701023_701632_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.7e-85	75.0
WP_011192301.1\|701628_703068_+	hypothetical protein	F1BUP1	Erwinia_phage	3.8e-75	77.8
WP_011192300.1\|703079_703559_+\|tail	phage tail protein	F1BUP0	Erwinia_phage	1.2e-28	41.9
WP_011192299.1\|703692_704868_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.3e-179	79.8
WP_011192298.1\|704879_705395_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.5e-61	66.3
WP_011192297.1\|705448_705796_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.6e-18	51.6
WP_071819140.1\|705810_705930_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_011192295.1\|705922_708838_+\|tail	phage tail tape measure protein	Q9ZXK0	Pseudomonas_virus	2.8e-154	52.6
WP_011192294.1\|708849_709314_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-44	56.2
WP_011192293.1\|709310_710405_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.9e-127	65.7
WP_012105206.1\|710479_710695_+	phage transcriptional activator, Ogr/Delta	S4TNZ3	Salmonella_phage	1.1e-18	60.6
WP_011192291.1\|711532_711937_+	hypothetical protein	NA	NA	NA	NA
WP_032466310.1\|711938_712160_+	hypothetical protein	NA	NA	NA	NA
WP_049800086.1\|712187_713846_-	hypothetical protein	A0A1I9KFG8	Aeromonas_phage	6.3e-167	54.0
WP_011192289.1\|713808_720210_-	hypothetical protein	Q08J70	Stx2-converting_phage	1.3e-281	33.9
WP_011192288.1\|720543_721935_-	hypothetical protein	A0A0P0ZD72	Stx2-converting_phage	5.3e-26	28.9
WP_011192287.1\|721945_722185_-	hypothetical protein	NA	NA	NA	NA
WP_011192286.1\|722184_722568_-	hypothetical protein	A0A1I9KFD7	Aeromonas_phage	5.8e-31	57.6
WP_011192285.1\|722583_723189_-	hypothetical protein	A0A1I9KFE8	Aeromonas_phage	2.5e-49	54.9
WP_011192284.1\|723196_723571_-	hypothetical protein	A0A2L1IV61	Escherichia_phage	9.6e-31	54.7
WP_011192283.1\|723545_724577_-	hypothetical protein	NA	NA	NA	NA
WP_011192282.1\|724643_725750_-	DUF1983 domain-containing protein	A0A2L1IV54	Escherichia_phage	1.9e-106	49.3
WP_011192281.1\|725746_727375_-	hypothetical protein	A0A2R2Z356	Escherichia_phage	3.0e-177	56.4
WP_011192280.1\|727606_728071_+	hypothetical protein	NA	NA	NA	NA
WP_011192279.1\|728064_728391_+	DUF1493 family protein	NA	NA	NA	NA
WP_106470341.1\|728403_728817_-\|tail	phage tail protein	F1BUK2	Cronobacter_phage	1.4e-06	38.0
WP_011192277.1\|728878_731014_-	hypothetical protein	I7K3G3	Yersinia_phage	4.5e-48	42.0
WP_011192276.1\|731010_731664_-	hypothetical protein	Q08J85	Stx2-converting_phage	1.2e-68	59.5
WP_011192275.1\|731663_732260_-	hypothetical protein	A0A088CE76	Shigella_phage	7.6e-30	38.9
WP_011192274.1\|732262_732715_-	hypothetical protein	A0A2R2Z354	Escherichia_phage	1.8e-31	52.8
WP_011192273.1\|732780_733164_-	hypothetical protein	NA	NA	NA	NA
WP_011192272.1\|733241_734465_-\|capsid	N4-gp56 family major capsid protein	A0A088CC32	Shigella_phage	2.2e-172	73.6
733501:733517	attR	NA	NA	NA	NA
WP_011192271.1\|734524_735574_-	hypothetical protein	A0A0H4J3F0	Shigella_phage	2.0e-57	40.4
733501:733517	attR	NA	NA	NA	NA
WP_011192270.1\|735843_737964_-	hypothetical protein	A0A088CE71	Shigella_phage	1.2e-258	65.6
WP_025383644.1\|737963_739628_-\|terminase	terminase	B0FEF1	Escherichia_phage	9.3e-235	70.5
WP_011192268.1\|739666_740524_-	hypothetical protein	A0A1I9KFG9	Aeromonas_phage	6.0e-44	39.1
WP_001297096.1\|740641_741421_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|741420_742443_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_011192267.1\|742549_742990_-	DUF2829 domain-containing protein	A0A2I7R7I1	Vibrio_phage	1.7e-26	62.5
WP_025383640.1\|743015_743204_-	hypothetical protein	A0A2I7RNR1	Vibrio_phage	7.9e-18	79.3
WP_011192266.1\|743207_743726_-	hypothetical protein	H9C185	Pectobacterium_phage	5.2e-19	42.8
WP_025383638.1\|743857_744340_-	lysozyme	A0A2H4JCH1	uncultured_Caudovirales_phage	1.2e-49	57.6
WP_011192264.1\|744345_744558_-\|holin	holin	H9C183	Pectobacterium_phage	1.1e-23	72.9
WP_011192263.1\|744730_745540_-	hypothetical protein	NA	NA	NA	NA
WP_050128217.1\|745632_745851_-	hypothetical protein	K7PJU3	Enterobacteria_phage	3.4e-12	50.8
WP_011192262.1\|745851_746310_-	VRR-NUC domain-containing protein	M4SRS1	Psychrobacter_phage	2.3e-10	33.0
WP_011192261.1\|746306_747242_-	hypothetical protein	NA	NA	NA	NA
WP_032466299.1\|747313_747634_-	DUF1364 domain-containing protein	A0A2K8HR56	Pseudomonas_phage	1.3e-15	44.9
WP_011192260.1\|747635_748283_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.3e-14	31.2
WP_011192259.1\|748279_750025_-	DNA methyltransferase	H9C171	Pectobacterium_phage	7.2e-238	61.5
WP_011192258.1\|750021_750897_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	2.4e-85	52.2
WP_011192257.1\|750893_751820_-	site-specific DNA-methyltransferase	A0A059VK11	Pseudomonas_phage	1.7e-108	52.8
WP_011192256.1\|751816_752164_-	hypothetical protein	A0A1I9KG94	Aeromonas_phage	3.8e-05	43.4
WP_011192255.1\|752163_753300_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	4.9e-94	60.3
WP_011192254.1\|753303_754080_-	hypothetical protein	H2DE84	Erwinia_phage	7.3e-49	51.5
WP_011192253.1\|754083_754929_-	hypothetical protein	H2DE83	Erwinia_phage	1.0e-43	47.0
WP_032466294.1\|754937_755117_-	hypothetical protein	NA	NA	NA	NA
WP_011192252.1\|755113_755476_-	hypothetical protein	NA	NA	NA	NA
WP_025383629.1\|755493_755739_-	hypothetical protein	Q8W647	Enterobacteria_phage	1.1e-16	64.4
WP_011192250.1\|755863_756550_+	LexA family transcriptional regulator	Q8W648	Enterobacteria_phage	8.1e-60	52.0
WP_011192249.1\|756560_757178_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_011192248.1\|757455_757701_+	hypothetical protein	NA	NA	NA	NA
WP_011192247.1\|757785_758055_+	KTSC domain-containing protein	A9YWW2	Burkholderia_phage	1.9e-12	43.4
WP_032466292.1\|758116_758332_+	hypothetical protein	NA	NA	NA	NA
WP_144405789.1\|758405_758591_+	hypothetical protein	NA	NA	NA	NA
WP_041175452.1\|758958_759426_+	hypothetical protein	G0YQE7	Erwinia_phage	2.9e-45	60.8
WP_042593118.1\|759441_759768_+	hypothetical protein	NA	NA	NA	NA
WP_011192244.1\|760068_760911_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.4
WP_011192243.1\|760897_762502_+	hypothetical protein	A0A2H4J6P1	uncultured_Caudovirales_phage	3.2e-107	51.3
WP_011192242.1\|762546_763686_+	hypothetical protein	M4MHC3	Vibrio_phage	9.1e-32	26.4
WP_106470333.1\|763685_764111_+	hypothetical protein	NA	NA	NA	NA
WP_011192240.1\|764347_764584_+	hypothetical protein	A0A248SL48	Klebsiella_phage	8.5e-17	64.6
WP_011192239.1\|764942_765806_+	hypothetical protein	A0A192Y7N1	Salmonella_phage	5.9e-23	38.9
WP_011192237.1\|766369_766873_+	hypothetical protein	NA	NA	NA	NA
WP_011192236.1\|767192_768215_+\|integrase	tyrosine-type recombinase/integrase	K7PLZ2	Enterobacterial_phage	1.1e-137	70.2
WP_011192235.1\|768549_769596_-	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_011192234.1\|769592_770648_-\|integrase	tyrosine-type recombinase/integrase	Q1I119	Pasteurella_virus	3.2e-116	62.1
WP_011192233.1\|770767_771646_-	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_011192232.1\|771645_772917_-	AAA family ATPase	NA	NA	NA	NA
WP_011192231.1\|772944_773556_-	phage repressor protein CI	Q6K1G0	Salmonella_virus	3.4e-25	37.9
WP_011192230.1\|773626_773824_+	hypothetical protein	Q1I116	Pasteurella_virus	4.7e-05	39.3
WP_011192229.1\|773878_774388_+	hypothetical protein	E5G6L3	Salmonella_phage	2.7e-44	52.4
WP_041175449.1\|774397_774583_+	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_011192228.1\|774594_774906_+	hypothetical protein	NA	NA	NA	NA
WP_011192227.1\|774971_775244_+	DUF2732 family protein	NA	NA	NA	NA
WP_011192226.1\|775230_777513_+	replication endonuclease	Q858T4	Yersinia_virus	2.2e-242	57.0
WP_011192225.1\|777535_777895_+	hypothetical protein	H9C172	Pectobacterium_phage	6.2e-19	41.1
WP_033852502.1\|778031_778226_+	hypothetical protein	NA	NA	NA	NA
WP_011192224.1\|778646_779684_-\|portal	phage portal protein	F1BUR7	Erwinia_phage	1.8e-159	78.4
WP_011192223.1\|779680_780445_-\|terminase	terminase	O80303	Escherichia_phage	2.1e-56	46.6
WP_011192222.1\|780441_782214_-\|terminase	terminase ATPase subunit family protein	F1BUR2	Erwinia_phage	2.9e-287	81.0
WP_011192221.1\|782362_783217_+\|capsid	GPO family capsid scaffolding protein	Q01088	Escherichia_phage	6.5e-91	61.1
WP_011192220.1\|783293_784532_+\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	7.1e-147	74.6
WP_011192219.1\|784535_785195_+\|terminase	terminase endonuclease subunit	F1BUQ7	Erwinia_phage	7.2e-82	69.9
WP_011192218.1\|785294_785768_+\|head	head completion/stabilization protein	M1SNN6	Escherichia_phage	1.7e-40	56.8
WP_011192217.1\|785767_785971_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.5e-19	64.2
WP_038830077.1\|785973_786183_+	hypothetical protein	A0A218M4L5	Erwinia_phage	1.7e-08	44.9
WP_011192215.1\|786166_786673_+	lysozyme	A0A218M4K3	Erwinia_phage	2.0e-55	62.3
WP_011192214.1\|786674_787091_+\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	8.7e-25	49.6
WP_071880004.1\|787050_787248_+\|holin	holin	F1BUQ0	Erwinia_phage	4.0e-12	59.3
WP_011192213.1\|787186_787642_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	4.0e-47	63.3
WP_011192212.1\|787638_788088_+	phage virion morphogenesis protein	O80313	Escherichia_phage	5.7e-46	63.8
WP_011192211.1\|788161_788803_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	2.4e-69	61.0
WP_011192210.1\|788799_789150_+\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	2.4e-39	69.0
WP_011192209.1\|789154_790063_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	1.9e-125	79.5
WP_011192208.1\|790055_790664_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	3.9e-90	78.6
WP_011192207.1\|790660_792100_+	hypothetical protein	F1BUP1	Erwinia_phage	1.2e-76	79.4
WP_011192206.1\|792111_792594_+\|tail	phage tail protein	F1BUP0	Erwinia_phage	1.5e-28	41.3
WP_011192205.1\|792721_793891_+\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	2.1e-185	80.2
WP_011192204.1\|793904_794420_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	2.3e-67	73.1
WP_011192203.1\|794470_794782_+\|tail	phage tail assembly protein	F1BUU0	Erwinia_phage	2.9e-25	60.9
WP_011192202.1\|794814_794937_+\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	7.4e-09	68.4
WP_011192201.1\|794929_797356_+\|tail	phage tail tape measure protein	U5N0T4	Enterobacteria_phage	8.4e-160	44.5
WP_011192200.1\|797355_797841_+\|tail	phage tail protein	S4TUC3	Salmonella_phage	1.5e-47	60.4
WP_011192199.1\|797837_799004_+	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	7.4e-146	66.5
WP_011192198.1\|799095_799311_+	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	9.7e-20	62.5
799495:799617	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1359674 : 1368350

Shigella_phage(33.33%)

coat,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011192008.1\|1359674_1360094_-\|tail	tail assembly protein	F1BUK2	Cronobacter_phage	8.3e-07	32.3
WP_011192007.1\|1360095_1360812_-	hypothetical protein	NA	NA	NA	NA
WP_011192006.1\|1360908_1361511_-	YmfQ family protein	A0A2P9JZK7	Alteromonadaceae_phage	2.0e-33	38.6
WP_011192005.1\|1361507_1362644_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.5e-31	30.5
WP_002208848.1\|1362647_1363103_-	hypothetical protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
WP_002215460.1\|1363099_1363696_-\|plate	baseplate assembly protein	NA	NA	NA	NA
WP_011192004.1\|1363711_1364767_-\|tail	tail protein	A0A2I7S9G1	Vibrio_phage	1.3e-37	27.5
WP_011192003.1\|1364763_1366170_-	hypothetical protein	U5P4I0	Shigella_phage	3.5e-17	36.1
WP_002208853.1\|1366436_1367930_-\|coat	coat protein	NA	NA	NA	NA
WP_002208854.1\|1368050_1368350_-\|tail	phage tail assembly protein	NA	NA	NA	NA

DBSCAN-SWA_3

1960383 : 1968241

uncultured_Mediterranean_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011191781.1\|1960383_1962939_+	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.4e-26	22.8
WP_002209743.1\|1963264_1964473_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_011191780.1\|1964698_1965697_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	3.6e-32	37.3
WP_012304557.1\|1965751_1966735_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	2.3e-07	35.6
WP_002209395.1\|1966856_1967483_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.1e-34	49.4
WP_011191778.1\|1967476_1968241_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.2e-57	46.7

DBSCAN-SWA_4

2053034 : 2132974

Yellowstone_lake_phycodnavirus(18.18%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002209743.1\|2053034_2054243_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002209320.1\|2054436_2055480_-	GMP reductase	A0A0N9Q9A5	Chrysochromulina_ericina_virus	6.3e-104	56.2
WP_002209319.1\|2055775_2056396_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_002209318.1\|2056392_2057145_+	cell division protein ZapD	NA	NA	NA	NA
WP_002209317.1\|2057352_2057559_+	DNA gyrase inhibitor YacG	NA	NA	NA	NA
WP_002213759.1\|2057748_2058207_-\|transposase	IS200/IS605-like element IS1541A family transposase	I4AZI8	Saccharomonospora_phage	8.5e-13	31.5
WP_002210424.1\|2058421_2058808_-	8-oxo-dGTP diphosphatase MutT	A0A0B5CYJ3	Rhizoctonia_fumigata_mycovirus	8.4e-06	30.4
WP_002210426.1\|2059102_2061817_-	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_011191738.1\|2061894_2062428_-	secA regulator SecM	NA	NA	NA	NA
WP_002210428.1\|2062456_2062981_+	DUF721 domain-containing protein	NA	NA	NA	NA
WP_002228285.1\|2063147_2064068_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA
WP_002210430.1\|2064167_2065319_-	cell division protein FtsZ	NA	NA	NA	NA
WP_002210431.1\|2065391_2066648_-	cell division protein FtsA	NA	NA	NA	NA
WP_011191736.1\|2066674_2067502_-	cell division protein FtsQ	NA	NA	NA	NA
WP_002210432.1\|2067503_2068424_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_002216457.1\|2068416_2069892_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_011191735.1\|2070029_2071100_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_002210435.1\|2071096_2072299_-	cell division protein FtsW	NA	NA	NA	NA
WP_011191734.1\|2072298_2073615_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_002210437.1\|2073617_2074700_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_011191733.1\|2074693_2076070_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_012105673.1\|2076066_2077554_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_011191731.1\|2077540_2079304_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA
WP_002210441.1\|2079369_2079687_-	cell division protein FtsL	NA	NA	NA	NA
WP_002210442.1\|2079683_2080646_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_011191730.1\|2080648_2081107_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA
WP_087768171.1\|2081661_2081751_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002210446.1\|2082208_2082649_+	L-alanine exporter AlaE	NA	NA	NA	NA
WP_011191729.1\|2082779_2083790_-	catabolite repressor/activator	NA	NA	NA	NA
WP_002424260.1\|2084257_2084782_-	acetolactate synthase small subunit	NA	NA	NA	NA
WP_002228103.1\|2084754_2086482_-	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	7.8e-59	29.4
WP_002216437.1\|2086941_2088747_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	3.5e-38	23.2
WP_002216434.1\|2089299_2090256_-	transcriptional regulator LeuO	NA	NA	NA	NA
WP_012413476.1\|2090933_2091125_+	hypothetical protein	NA	NA	NA	NA
WP_002210453.1\|2091471_2093034_+	2-isopropylmalate synthase	NA	NA	NA	NA
WP_011191728.1\|2093036_2094128_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_011191727.1\|2094129_2095560_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_002210456.1\|2095574_2096177_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_011191726.1\|2096454_2097636_-	MFS transporter	NA	NA	NA	NA
WP_011191725.1\|2098281_2099943_+	HTH-type transcriptional regulator SgrR	NA	NA	NA	NA
WP_012413474.1\|2100489_2100621_+\|transposase	transposase	NA	NA	NA	NA
WP_011191723.1\|2100865_2102368_-	hypothetical protein	NA	NA	NA	NA
WP_002214274.1\|2103013_2104006_+	thiamine ABC transporter substrate binding subunit	NA	NA	NA	NA
WP_011191722.1\|2103981_2105589_+	thiamine/thiamine pyrophosphate ABC transporter permease ThiP	NA	NA	NA	NA
WP_011191721.1\|2105575_2106286_+	thiamine ABC transporter ATP-binding protein ThiQ	G3M9Y6	Bacillus_virus	1.3e-20	34.1
WP_002210465.1\|2106354_2107122_-	DedA family protein	NA	NA	NA	NA
WP_011191720.1\|2107317_2109687_+	DNA polymerase II	A0A0P0YM26	Yellowstone_lake_phycodnavirus	1.1e-31	25.5
WP_011191719.1\|2110147_2113054_+	RNA polymerase-associated protein RapA	A0A1B1IUI1	uncultured_Mediterranean_phage	6.8e-23	37.1
WP_002210468.1\|2113309_2113663_-	hypothetical protein	NA	NA	NA	NA
WP_011191718.1\|2117187_2118798_-	OmpA family protein	NA	NA	NA	NA
WP_002210470.1\|2118794_2120150_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_011191717.1\|2120269_2120761_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002214737.1\|2120753_2121119_-	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_002210473.1\|2121124_2121742_-	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_002214739.1\|2121734_2122838_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_011191716.1\|2122863_2125083_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_011191715.1\|2125095_2127444_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.1e-14	32.9
WP_002210475.1\|2127547_2130136_-	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	1.9e-77	28.7
WP_002210476.1\|2130153_2131137_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_011191714.1\|2131129_2132974_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_5

3868653 : 3956571

Cronobacter_phage(43.59%)

capsid,holin,head,transposase,protease,integrase,tail,portal,tRNA,terminase

attL 3932354:3932370|attR 3959664:3959680

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011192970.1\|3868653_3869166_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_002209971.1\|3869358_3870513_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.7e-126	62.1
WP_002209969.1\|3871719_3873699_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_002213775.1\|3873899_3874358_+\|transposase	IS200/IS605-like element IS1541B family transposase	I4AZI8	Saccharomonospora_phage	8.5e-13	31.5
WP_002209968.1\|3874568_3874889_+	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_011192969.1\|3875000_3875753_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_011192968.1\|3876243_3878238_+	transketolase	NA	NA	NA	NA
WP_002209964.1\|3878616_3879633_+	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_002209963.1\|3879735_3880899_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_002209962.1\|3881018_3882098_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_002209961.1\|3882535_3883405_+	small-conductance mechanosensitive channel MscS	NA	NA	NA	NA
WP_002209960.1\|3883667_3884285_+	arginine exporter ArgO	NA	NA	NA	NA
WP_011192966.1\|3884474_3885254_+	oxidative stress defense protein	NA	NA	NA	NA
WP_002209958.1\|3885264_3886173_-	LysR family transcriptional regulator ArgP	NA	NA	NA	NA
WP_002209957.1\|3886514_3887171_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_002209956.1\|3887477_3888719_+	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	2.1e-98	46.5
WP_011192965.1\|3888983_3889580_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_002209954.1\|3889943_3890273_-	cell division protein ZapA	NA	NA	NA	NA
WP_002209953.1\|3890609_3891188_+	YecA family protein	NA	NA	NA	NA
WP_011192964.1\|3891275_3892589_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA
WP_011192963.1\|3892640_3893819_+	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
WP_002209950.1\|3893991_3895212_+	FAD-dependent 2-octaprenylphenol hydroxylase	NA	NA	NA	NA
WP_011192962.1\|3895932_3897030_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_002209948.1\|3897098_3897485_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_002209947.1\|3897696_3900576_+	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	1.7e-268	52.3
WP_011192961.1\|3900953_3901391_+	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_148305774.1\|3902450_3904601_+	autotransporter adhesin YapN	NA	NA	NA	NA
WP_011192960.1\|3904704_3905808_+	hypothetical protein	NA	NA	NA	NA
WP_011192959.1\|3906008_3906710_+	hemolysin III family protein	NA	NA	NA	NA
WP_002209941.1\|3906967_3907465_+	DUF2165 family protein	NA	NA	NA	NA
WP_011192958.1\|3907537_3908530_-\|tRNA	tRNA-modifying protein YgfZ	NA	NA	NA	NA
WP_002209939.1\|3908846_3909113_+	FAD assembly factor SdhE	NA	NA	NA	NA
WP_002215144.1\|3909093_3909519_+	membrane protein	NA	NA	NA	NA
WP_002209937.1\|3909518_3910217_+	two-component system response regulator CreB	NA	NA	NA	NA
WP_002209936.1\|3910227_3911646_+	two-component system sensor histidine kinase CreC	NA	NA	NA	NA
WP_032466588.1\|3911766_3913224_+	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_011192956.1\|3913308_3913827_-	flavodoxin FldB	NA	NA	NA	NA
WP_002209933.1\|3913933_3914833_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	8.5e-33	29.7
WP_002209932.1\|3914863_3915580_+	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA
WP_002209931.1\|3915586_3917320_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.6e-64	29.7
WP_002228062.1\|3917498_3918596_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	5.4e-05	39.0
WP_002209930.1\|3918606_3920124_+\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.1e-85	37.0
WP_011192954.1\|3920556_3921771_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	3.7e-132	58.8
WP_011192953.1\|3922497_3924219_-	hypothetical protein	F1BUJ7	Cronobacter_phage	5.3e-124	48.7
WP_011192952.1\|3924215_3924770_-	hypothetical protein	F1BUJ9	Cronobacter_phage	1.0e-36	51.1
WP_011192951.1\|3924762_3925473_-	hypothetical protein	Q94MX8	Haemophilus_virus	4.2e-11	25.9
WP_011192950.1\|3925469_3925988_-\|tail	tail assembly chaperone	A9DEL3	Yersinia_phage	4.1e-40	49.4
WP_011192949.1\|3925987_3927583_-\|tail	phage tail protein	F1BUK3	Cronobacter_phage	2.2e-55	40.5
WP_011192948.1\|3927592_3928216_-	hypothetical protein	F1BUK5	Cronobacter_phage	1.2e-57	57.9
WP_011192947.1\|3928208_3929393_-	hypothetical protein	F1BUK6	Cronobacter_phage	3.9e-134	59.3
WP_011192946.1\|3929389_3929719_-	DUF2590 family protein	Q94MY3	Haemophilus_virus	4.6e-29	60.4
WP_011192945.1\|3929715_3931692_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	2.5e-130	41.0
WP_012413912.1\|3931693_3931873_-	hypothetical protein	NA	NA	NA	NA
WP_011192944.1\|3931917_3932193_-	hypothetical protein	NA	NA	NA	NA
WP_011192943.1\|3932307_3932682_-	hypothetical protein	F1BUL2	Cronobacter_phage	3.2e-10	40.2
3932354:3932370	attL	NA	NA	NA	NA
WP_011192942.1\|3932681_3933023_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	1.1e-41	77.2
WP_011192941.1\|3933019_3933322_-\|holin	holin	C7BGD7	Burkholderia_phage	2.2e-09	39.3
WP_011192940.1\|3933331_3933787_-	DUF2597 family protein	A5X9I1	Aeromonas_virus	7.0e-44	58.3
WP_011192939.1\|3933789_3934956_-	DUF2586 family protein	F1BUL5	Cronobacter_phage	2.7e-100	51.0
WP_011192938.1\|3934979_3935639_-	hypothetical protein	F1BUL6	Cronobacter_phage	4.1e-53	49.8
WP_011192937.1\|3935635_3936130_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	2.6e-31	40.5
WP_011192936.1\|3936126_3936600_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	6.2e-43	61.2
WP_011192935.1\|3936708_3937413_-\|terminase	terminase	F1BUM0	Cronobacter_phage	8.6e-73	58.8
WP_011192934.1\|3937415_3938444_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	2.4e-100	57.0
WP_011192933.1\|3938478_3939567_-\|capsid	phage capsid protein	A0A2I7RNH1	Vibrio_phage	6.7e-32	40.6
WP_011192932.1\|3939739_3941545_+	hypothetical protein	F1BUM5	Cronobacter_phage	8.6e-194	56.3
WP_011192931.1\|3941541_3942609_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	3.2e-127	61.9
WP_086025326.1\|3942665_3942932_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	4.4e-22	55.2
WP_011192928.1\|3946095_3946797_-	3'-5' exonuclease	A2I2Z6	Vibrio_virus	8.6e-49	52.7
WP_011192927.1\|3946806_3947472_-	DUF3850 domain-containing protein	A0A1S6KVH3	Escherichia_phage	6.1e-12	51.4
WP_041175470.1\|3947471_3947708_-	hypothetical protein	NA	NA	NA	NA
WP_011192926.1\|3947778_3948129_-	DUF5347 family protein	NA	NA	NA	NA
WP_041175469.1\|3948140_3948362_-	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_011192925.1\|3948358_3948628_-	hypothetical protein	NA	NA	NA	NA
WP_041175468.1\|3948774_3949008_+	hypothetical protein	NA	NA	NA	NA
WP_012413891.1\|3949467_3949680_-	hypothetical protein	NA	NA	NA	NA
WP_011192923.1\|3949676_3949949_-	hypothetical protein	Q1JS60	Enterobacteria_phage	8.8e-34	68.9
WP_012413890.1\|3950062_3950362_+	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	6.7e-27	59.6
WP_011192921.1\|3950428_3951412_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	3.4e-112	59.9
WP_002209928.1\|3951553_3951739_-	hypothetical protein	NA	NA	NA	NA
WP_002214785.1\|3952336_3952597_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	7.4e-06	36.0
WP_011192920.1\|3952659_3953022_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024063131.1\|3953185_3953482_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA
WP_002209924.1\|3953481_3953880_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA
WP_011192918.1\|3954279_3956571_-	DNA primase	Q7M2A8	Enterobacteria_phage	1.9e-153	40.6
3959664:3959680	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009711

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP009712

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection