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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP012545 Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 plasmid pLBCZ-1, complete sequence 0 crisprs NA 0 0 0 0
NZ_AP012546 Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 plasmid pLBCZ-2, complete sequence 0 crisprs NA 0 0 0 0
NZ_AP012544 Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 2 crisprs DinG,DEDDh,csa3,c2c9_V-U4,cas3,WYL 0 0 15 0

Results visualization

1. NZ_AP012544
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP012544_1 2013196-2013307 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP012544_2 2763482-2763584 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 15617 : 54424 32 unidentified_phage(57.14%) transposase NA
DBSCAN-SWA_2 80995 : 122710 39 unidentified_phage(50.0%) transposase NA
DBSCAN-SWA_3 197213 : 264629 50 unidentified_phage(45.45%) transposase NA
DBSCAN-SWA_4 343225 : 415076 82 Lactobacillus_phage(77.59%) head,tail,transposase,protease,holin,capsid,integrase,terminase,portal attL 362651:362669|attR 401586:401604
DBSCAN-SWA_5 642987 : 779602 146 Lactobacillus_phage(79.46%) head,tail,transposase,tRNA,protease,holin,capsid,integrase,terminase,portal attL 705691:705727|attR 771258:771294
DBSCAN-SWA_6 803244 : 868617 60 Lactobacillus_phage(23.08%) holin,integrase,transposase,tRNA attL 854679:854706|attR 881278:881305
DBSCAN-SWA_7 1389728 : 1486252 88 Lactobacillus_rhamnosus_Lc-Nu-like_prophage(25.0%) head,tail,transposase,tRNA,holin,capsid,integrase,terminase,portal attL 1383147:1383206|attR 1465495:1465560
DBSCAN-SWA_8 1829076 : 1838129 9 Lactobacillus_phage(42.86%) integrase,transposase attL 1822996:1823009|attR 1843149:1843162
DBSCAN-SWA_9 2219055 : 2271881 47 unidentified_phage(28.57%) protease,transposase,tRNA NA
DBSCAN-SWA_10 2276920 : 2305615 23 unidentified_phage(83.33%) transposase,bacteriocin NA
DBSCAN-SWA_11 2397171 : 2405332 8 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_12 2448706 : 2519675 45 unidentified_phage(15.38%) protease,transposase,tRNA NA
DBSCAN-SWA_13 2624133 : 2708992 70 unidentified_phage(50.0%) transposase,bacteriocin NA
DBSCAN-SWA_14 2767152 : 2820094 44 unidentified_phage(44.44%) head,tail,transposase,protease,holin NA
DBSCAN-SWA_15 2833838 : 2876965 45 unidentified_phage(28.57%) holin,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage