CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP004397	Celeribacter indicus strain P73 plasmid pP73D, complete sequence	0 crisprs	NA	0	1
NZ_CP004393	Celeribacter indicus strain P73 chromosome, complete genome	0 crisprs	csa3,cas3,RT,WYL,DEDDh	0	5
NZ_CP004398	Celeribacter indicus strain P73 plasmid pP73E, complete sequence	0 crisprs	NA	0	0
NZ_CP004396	Celeribacter indicus strain P73 plasmid pP73C, complete sequence	0 crisprs	NA	0	1
NZ_CP004394	Celeribacter indicus strain P73 plasmid pP73A, complete sequence	2 crisprs	NA	3	0
NZ_CP004395	Celeribacter indicus strain P73 plasmid pP73B, complete sequence	0 crisprs	RT	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

73471 : 101204

Burkholderia_virus(25.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_144401201.1\|73471_74694_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.6e-103	67.3
WP_009573635.1\|75138_75435_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_082033407.1\|75686_77537_+	copper-binding protein	NA	NA	NA	NA
WP_024099411.1\|77617_79252_+\|transposase	Mu transposase C-terminal domain-containing protein	NA	NA	NA	NA
WP_024099410.1\|79253_80135_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_008335465.1\|80131_80923_+	TniQ family protein	NA	NA	NA	NA
WP_074743516.1\|81176_81728_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_043872339.1\|81799_82510_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_052453657.1\|82509_83442_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_043872340.1\|83604_83910_+\|transposase	transposase	NA	NA	NA	NA
WP_082033408.1\|84073_84190_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_082033403.1\|84348_85875_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_052453658.1\|85960_86887_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_043872341.1\|87179_88403_+	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_052453659.1\|88405_89647_+	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	6.1e-05	29.4
WP_158401975.1\|91510_91672_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.6e-06	56.8
WP_043872342.1\|92179_92503_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_052453660.1\|92502_93708_-	cytochrome P450	NA	NA	NA	NA
WP_074743471.1\|93800_94709_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_043872344.1\|94714_96025_-	TRAP transporter large permease	NA	NA	NA	NA
WP_043872345.1\|96039_96540_-	TRAP transporter small permease	NA	NA	NA	NA
WP_052453662.1\|96608_97610_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_043872346.1\|97707_98823_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_043872375.1\|98822_100274_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_144401211.1\|100447_101204_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.0e-10	36.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP004397

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 7710

Burkholderia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043872377.1\|0_1035_+	replication initiator protein A	A0A0K1LLD0	Rhodobacter_phage	1.2e-83	47.2
WP_043872378.1\|1147_1816_+	ParA family protein	A0A0A8IL09	Aurantimonas_phage	4.7e-36	42.5
WP_043872379.1\|2179_3400_+	DNA (cytosine-5-)-methyltransferase	E5E3X6	Burkholderia_phage	5.0e-121	56.4
WP_043872380.1\|3392_3854_+	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	3.5e-43	58.2
WP_043872381.1\|3879_5175_+	hypothetical protein	NA	NA	NA	NA
WP_043872382.1\|5253_5973_-	hypothetical protein	NA	NA	NA	NA
WP_043872383.1\|6002_6542_-	recombinase family protein	A0A1S6L009	Salmonella_phage	1.2e-37	49.2
WP_082033414.1\|6630_7710_+	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	5.0e-96	52.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP004393

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1694743 : 1707594

Paracoccus_phage(55.56%)

tail,protease,head,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043869285.1\|1694743_1695958_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.2e-58	38.0
WP_043869286.1\|1695959_1696532_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.6e-32	53.7
WP_043869287.1\|1696577_1697771_+\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	2.4e-67	41.0
WP_043869288.1\|1697953_1698550_+	hypothetical protein	NA	NA	NA	NA
WP_043869289.1\|1698549_1698891_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_043869290.1\|1698887_1699298_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_043869291.1\|1699323_1699737_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_043869292.1\|1699739_1700054_+	gene transfer agent family protein	NA	NA	NA	NA
WP_043869293.1\|1700064_1700304_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_043869294.1\|1700296_1700959_+\|tail	phage tail tape measure protein	K7YBG2	uncultured_Mediterranean_phage	7.9e-12	34.6
WP_043869295.1\|1700988_1701621_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	6.1e-54	47.6
WP_043869296.1\|1701620_1702520_+	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	3.4e-58	42.7
WP_043869297.1\|1702521_1702962_+	C40 family peptidase	A0A1V0DYB6	Dinoroseobacter_phage	1.3e-31	48.9
WP_052453552.1\|1702964_1706888_+\|tail	glycoside hydrolase/phage tail family protein	A0A0B5A7K5	Paracoccus_phage	2.2e-226	38.5
WP_043869298.1\|1706880_1707594_+	DUF2793 domain-containing protein	A0A0B5A0F6	Paracoccus_phage	3.7e-15	39.5

DBSCAN-SWA_2

1817900 : 1851603

Acidithiobacillus_phage(16.67%)

tail,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043869387.1\|1817900_1818110_+	helix-turn-helix domain-containing protein	A0A221SAQ3	Ralstonia_phage	9.2e-07	47.9
WP_043869388.1\|1818121_1818607_+	hypothetical protein	K4HZ96	Acidithiobacillus_phage	2.9e-27	44.7
WP_043869389.1\|1818606_1819353_+	ATP-binding protein	A0A1B1INN1	uncultured_Mediterranean_phage	2.3e-52	44.9
WP_043869390.1\|1819372_1819873_+	DUF669 domain-containing protein	A0A173H0W0	Pseudoalteromonas_phage	9.2e-29	51.2
WP_043871543.1\|1820006_1820300_+	hypothetical protein	NA	NA	NA	NA
WP_043869391.1\|1820299_1821244_+	PD-(D/E)XK nuclease family protein	A0A0R6PJD3	Moraxella_phage	2.7e-74	47.9
WP_074743387.1\|1821237_1822974_+	DEAD/DEAH box helicase	A0A2H4GY70	Pseudomonas_phage	4.5e-123	45.5
WP_043869392.1\|1822970_1823195_+	hypothetical protein	NA	NA	NA	NA
WP_043869393.1\|1823194_1824880_+	PriCT-2 domain-containing protein	I6NPA6	Burkholderia_phage	4.3e-22	31.8
WP_043869394.1\|1824918_1825467_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_043869395.1\|1825857_1826346_+	hypothetical protein	K4ICN3	Acidithiobacillus_phage	3.2e-50	63.8
WP_043869396.1\|1826342_1826540_+	hypothetical protein	NA	NA	NA	NA
WP_043869397.1\|1826532_1826919_+	RNA polymerase subunit sigma	NA	NA	NA	NA
WP_043869398.1\|1827289_1828516_+	ParB N-terminal domain-containing protein	A0A0A8ILE7	Aurantimonas_phage	2.1e-122	53.6
WP_074743383.1\|1828519_1829674_+	DNA cytosine methyltransferase	A0A0F7L3T9	uncultured_marine_virus	1.2e-34	48.8
WP_043869399.1\|1829683_1829908_+	hypothetical protein	K4I1E3	Acidithiobacillus_phage	8.6e-19	67.6
WP_043869400.1\|1829961_1830474_-	DUF3489 domain-containing protein	K4HZZ2	Acidithiobacillus_phage	3.5e-15	40.9
WP_043869401.1\|1830567_1830819_-	hypothetical protein	NA	NA	NA	NA
WP_043869402.1\|1830828_1831011_-	hypothetical protein	NA	NA	NA	NA
WP_082033168.1\|1831580_1833551_+\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	2.3e-155	48.7
WP_043869404.1\|1833553_1833763_+	hypothetical protein	NA	NA	NA	NA
WP_043869405.1\|1833762_1835283_+\|portal	phage portal protein	Q75QM9	Wolbachia_phage	2.6e-82	38.6
WP_043869406.1\|1835287_1837303_+	peptidase U37	A0A2I7QXP2	Vibrio_phage	2.1e-84	34.4
WP_043869407.1\|1837379_1837715_+	DUF2190 family protein	NA	NA	NA	NA
WP_043869408.1\|1837714_1838026_+	hypothetical protein	NA	NA	NA	NA
WP_043869409.1\|1838022_1838655_+	hypothetical protein	G8DH49	Emiliania_huxleyi_virus	5.4e-50	52.4
WP_158401926.1\|1838663_1839341_+	hypothetical protein	NA	NA	NA	NA
WP_043869410.1\|1839418_1839838_+	hypothetical protein	G8DH50	Emiliania_huxleyi_virus	1.2e-37	57.9
WP_043869411.1\|1839862_1840801_+	hypothetical protein	G8DH51	Emiliania_huxleyi_virus	7.1e-99	57.0
WP_082033169.1\|1841235_1841466_+	hypothetical protein	NA	NA	NA	NA
WP_043869412.1\|1841458_1843894_+	potassium ABC transporter ATPase	A0A1J0GUY9	Halomonas_phage	1.4e-21	36.1
WP_043869413.1\|1843893_1844520_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	3.2e-63	58.3
WP_043869414.1\|1844516_1844867_+	hypothetical protein	NA	NA	NA	NA
WP_043871547.1\|1845002_1845677_+	lysozyme	F8TV87	EBPR_siphovirus	5.9e-39	46.1
WP_043869415.1\|1845682_1845913_+	hypothetical protein	NA	NA	NA	NA
WP_139267201.1\|1845913_1846198_-	hypothetical protein	NA	NA	NA	NA
WP_043869416.1\|1846312_1847197_+	DUF2163 domain-containing protein	F4YXU3	Roseobacter_phage	4.5e-55	38.8
WP_043869417.1\|1847193_1847628_+	C40 family peptidase	A0A1V0DYB6	Dinoroseobacter_phage	2.7e-29	48.5
WP_043869418.1\|1847637_1851603_+\|tail	glycoside hydrolase/phage tail family protein	A0A0B5A7K5	Paracoccus_phage	1.6e-264	43.1

DBSCAN-SWA_3

1884377 : 1945006

Acidithiobacillus_phage(12.9%)

tail,portal,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043869387.1\|1884377_1884587_+	helix-turn-helix domain-containing protein	A0A221SAQ3	Ralstonia_phage	9.2e-07	47.9
WP_043869388.1\|1884598_1885084_+	hypothetical protein	K4HZ96	Acidithiobacillus_phage	2.9e-27	44.7
WP_043869389.1\|1885083_1885830_+	ATP-binding protein	A0A1B1INN1	uncultured_Mediterranean_phage	2.3e-52	44.9
WP_043869390.1\|1885849_1886350_+	DUF669 domain-containing protein	A0A173H0W0	Pseudoalteromonas_phage	9.2e-29	51.2
WP_043871543.1\|1886483_1886777_+	hypothetical protein	NA	NA	NA	NA
WP_043869391.1\|1886776_1887721_+	PD-(D/E)XK nuclease family protein	A0A0R6PJD3	Moraxella_phage	2.7e-74	47.9
WP_074743387.1\|1887714_1889451_+	DEAD/DEAH box helicase	A0A2H4GY70	Pseudomonas_phage	4.5e-123	45.5
WP_043869392.1\|1889447_1889672_+	hypothetical protein	NA	NA	NA	NA
WP_043869393.1\|1889671_1891357_+	PriCT-2 domain-containing protein	I6NPA6	Burkholderia_phage	4.3e-22	31.8
WP_043869394.1\|1891395_1891944_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_043869395.1\|1892334_1892823_+	hypothetical protein	K4ICN3	Acidithiobacillus_phage	3.2e-50	63.8
WP_043869396.1\|1892819_1893017_+	hypothetical protein	NA	NA	NA	NA
WP_043869397.1\|1893009_1893396_+	RNA polymerase subunit sigma	NA	NA	NA	NA
WP_043869398.1\|1893766_1894993_+	ParB N-terminal domain-containing protein	A0A0A8ILE7	Aurantimonas_phage	2.1e-122	53.6
WP_074743383.1\|1894996_1896151_+	DNA cytosine methyltransferase	A0A0F7L3T9	uncultured_marine_virus	1.2e-34	48.8
WP_043869399.1\|1896160_1896385_+	hypothetical protein	K4I1E3	Acidithiobacillus_phage	8.6e-19	67.6
WP_043869400.1\|1896438_1896951_-	DUF3489 domain-containing protein	K4HZZ2	Acidithiobacillus_phage	3.5e-15	40.9
WP_043869401.1\|1897044_1897296_-	hypothetical protein	NA	NA	NA	NA
WP_043869402.1\|1897305_1897488_-	hypothetical protein	NA	NA	NA	NA
WP_082033168.1\|1898057_1900028_+\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	2.3e-155	48.7
WP_043869404.1\|1900030_1900240_+	hypothetical protein	NA	NA	NA	NA
WP_043869405.1\|1900239_1901760_+\|portal	phage portal protein	Q75QM9	Wolbachia_phage	2.6e-82	38.6
WP_043869406.1\|1901764_1903780_+	peptidase U37	A0A2I7QXP2	Vibrio_phage	2.1e-84	34.4
WP_043869407.1\|1903856_1904192_+	DUF2190 family protein	NA	NA	NA	NA
WP_043869408.1\|1904191_1904503_+	hypothetical protein	NA	NA	NA	NA
WP_043869409.1\|1904499_1905132_+	hypothetical protein	G8DH49	Emiliania_huxleyi_virus	5.4e-50	52.4
WP_158401926.1\|1905140_1905818_+	hypothetical protein	NA	NA	NA	NA
WP_043869410.1\|1905895_1906315_+	hypothetical protein	G8DH50	Emiliania_huxleyi_virus	1.2e-37	57.9
WP_043869411.1\|1906339_1907278_+	hypothetical protein	G8DH51	Emiliania_huxleyi_virus	7.1e-99	57.0
WP_082033169.1\|1907712_1907943_+	hypothetical protein	NA	NA	NA	NA
WP_043869412.1\|1907935_1910371_+	potassium ABC transporter ATPase	A0A1J0GUY9	Halomonas_phage	1.4e-21	36.1
WP_043869413.1\|1910370_1910997_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	3.2e-63	58.3
WP_043869414.1\|1910993_1911344_+	hypothetical protein	NA	NA	NA	NA
WP_043871547.1\|1911479_1912154_+	lysozyme	F8TV87	EBPR_siphovirus	5.9e-39	46.1
WP_043869415.1\|1912159_1912390_+	hypothetical protein	NA	NA	NA	NA
WP_139267201.1\|1912390_1912675_-	hypothetical protein	NA	NA	NA	NA
WP_043869416.1\|1912789_1913674_+	DUF2163 domain-containing protein	F4YXU3	Roseobacter_phage	4.5e-55	38.8
WP_043869417.1\|1913670_1914105_+	C40 family peptidase	A0A1V0DYB6	Dinoroseobacter_phage	2.7e-29	48.5
WP_043869418.1\|1914114_1918080_+\|tail	glycoside hydrolase/phage tail family protein	A0A0B5A7K5	Paracoccus_phage	1.6e-264	43.1
WP_144401201.1\|1919786_1921008_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.6e-103	67.3
WP_158401927.1\|1922373_1923450_-	serine/threonine protein kinase	B5LWE2	Feldmannia_species_virus	7.1e-10	28.3
WP_043869420.1\|1923446_1923914_-	hypothetical protein	NA	NA	NA	NA
WP_043869421.1\|1924337_1925012_+	DUF882 domain-containing protein	A0A0K1LLY2	Rhodobacter_phage	8.0e-44	50.6
WP_139267087.1\|1926623_1927384_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_139267226.1\|1927462_1927717_+	hypothetical protein	NA	NA	NA	NA
WP_043869427.1\|1927743_1928217_-	metal-binding protein	NA	NA	NA	NA
WP_043871553.1\|1928336_1930835_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.4e-88	33.9
WP_043869428.1\|1930993_1931191_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_139267224.1\|1931289_1931667_+	hypothetical protein	NA	NA	NA	NA
WP_043869429.1\|1931702_1932197_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	3.4e-15	49.5
WP_043869430.1\|1932317_1932716_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_043869431.1\|1932929_1933343_+	cytochrome c	NA	NA	NA	NA
WP_043869432.1\|1933360_1933972_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_052453136.1\|1934043_1934412_-	hypothetical protein	NA	NA	NA	NA
WP_043869434.1\|1935017_1935992_-	nucleoside hydrolase	NA	NA	NA	NA
WP_052453137.1\|1935988_1936942_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_052453138.1\|1937069_1938104_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_043869436.1\|1938131_1939133_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_043869437.1\|1939146_1940544_+	amidohydrolase family protein	NA	NA	NA	NA
WP_043869438.1\|1940540_1941332_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.2e-26	35.0
WP_139267225.1\|1941328_1942087_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_043869439.1\|1942086_1942845_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_043869440.1\|1942849_1943434_+	nucleoside 2-deoxyribosyltransferase	NA	NA	NA	NA
WP_043867921.1\|1943791_1945006_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	9.7e-40	43.4

DBSCAN-SWA_4

2434444 : 2489958

Enterobacteria_phage(15.0%)

terminase,integrase,tRNA,tail,transposase,head,capsid,portal

attL 2456870:2456916|attR 2474083:2474129

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043869773.1\|2434444_2435008_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.0e-36	43.8
WP_043869774.1\|2435004_2436054_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.2e-93	51.4
WP_043869775.1\|2436050_2436902_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.2e-33	37.1
WP_043869776.1\|2436898_2437774_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.3e-93	57.8
WP_139267141.1\|2437895_2438234_+\|transposase	transposase	NA	NA	NA	NA
WP_082033219.1\|2438242_2438974_+\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	2.4e-17	31.5
WP_082033336.1\|2440004_2440370_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_082033335.1\|2440369_2440717_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_043868168.1\|2440771_2442328_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.3e-100	41.8
WP_052453237.1\|2442995_2444009_+	UDP-phosphate N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
WP_043869779.1\|2444013_2444532_+	transcriptional activator RfaH	NA	NA	NA	NA
WP_043869780.1\|2444867_2445962_-	DUF1972 domain-containing protein	NA	NA	NA	NA
WP_074743484.1\|2445958_2447143_-	glycosyltransferase	NA	NA	NA	NA
WP_043869782.1\|2447170_2448334_-	hypothetical protein	NA	NA	NA	NA
WP_139267231.1\|2448452_2449256_-	glycosyltransferase	A0A0F7L2F7	uncultured_marine_virus	1.0e-05	28.0
WP_052453239.1\|2449261_2450095_-	hypothetical protein	NA	NA	NA	NA
WP_043869784.1\|2450091_2450733_-	sulfotransferase family 2 domain-containing protein	NA	NA	NA	NA
WP_158401939.1\|2450734_2452150_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_043869786.1\|2452470_2452761_-	MarR family EPS-associated transcriptional regulator	NA	NA	NA	NA
WP_043867921.1\|2453363_2454578_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	9.7e-40	43.4
WP_043869787.1\|2454776_2455091_+\|transposase	transposase	NA	NA	NA	NA
WP_144401201.1\|2455410_2456633_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.6e-103	67.3
2456870:2456916	attL	NA	NA	NA	NA
WP_043869788.1\|2457071_2458319_+\|integrase	site-specific integrase	A0A1X9SGU9	Bradyrhizobium_phage	4.1e-25	30.0
WP_074742979.1\|2458305_2458602_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.5e-18	54.3
WP_139267022.1\|2458591_2458792_-	hypothetical protein	NA	NA	NA	NA
WP_082033222.1\|2459105_2459495_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_174446909.1\|2459619_2459859_+	hypothetical protein	NA	NA	NA	NA
WP_052453571.1\|2459836_2460055_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_043869790.1\|2460057_2460357_+	hypothetical protein	NA	NA	NA	NA
WP_139267023.1\|2460353_2460563_+	hypothetical protein	NA	NA	NA	NA
WP_043869792.1\|2460559_2460796_+	hypothetical protein	NA	NA	NA	NA
WP_043869793.1\|2460798_2461008_+	hypothetical protein	NA	NA	NA	NA
WP_043869794.1\|2461106_2461436_-	hypothetical protein	NA	NA	NA	NA
WP_139267024.1\|2461727_2461964_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_043869795.1\|2462213_2463416_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	3.3e-40	30.9
WP_043869796.1\|2463405_2463792_+	hypothetical protein	NA	NA	NA	NA
WP_043869797.1\|2463791_2465312_+\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	1.4e-40	33.1
WP_043869798.1\|2465324_2465702_+	hypothetical protein	NA	NA	NA	NA
WP_043869800.1\|2466068_2466554_+	hypothetical protein	NA	NA	NA	NA
WP_043869801.1\|2466556_2466871_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_043869802.1\|2466870_2467326_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_043869803.1\|2467322_2467733_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_158401940.1\|2467747_2468056_+\|head	phage head closure protein	NA	NA	NA	NA
WP_043869805.1\|2468055_2468499_+\|terminase	phage terminase small subunit P27 family	Q8W6V0	Burkholderia_virus	2.0e-11	36.9
WP_174446926.1\|2468570_2470106_+\|terminase	terminase large subunit	C7BGG7	Burkholderia_phage	5.0e-57	31.6
WP_052453240.1\|2470105_2472076_+\|tail	phage tail tape measure protein	A0A291AUM6	Sinorhizobium_phage	1.2e-58	34.9
WP_043869807.1\|2472075_2472717_+	hypothetical protein	NA	NA	NA	NA
WP_052453241.1\|2472718_2473045_+	hypothetical protein	NA	NA	NA	NA
WP_074742983.1\|2473049_2473556_+	hypothetical protein	NA	NA	NA	NA
WP_082033359.1\|2474238_2475060_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
2474083:2474129	attR	NA	NA	NA	NA
WP_043869809.1\|2475181_2476513_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_043869810.1\|2476819_2477548_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_043869811.1\|2477558_2478194_-	sensor histidine kinase	NA	NA	NA	NA
WP_043869812.1\|2478945_2479362_+	universal stress protein	NA	NA	NA	NA
WP_043869813.1\|2479401_2481060_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.5e-22	24.7
WP_043869814.1\|2481377_2482436_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.3e-58	39.9
WP_043869815.1\|2482432_2483020_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.3e-29	36.8
WP_043869816.1\|2483141_2483513_+	DsrE family protein	NA	NA	NA	NA
WP_043869817.1\|2483647_2484805_+	ribonuclease D	NA	NA	NA	NA
WP_052453242.1\|2485436_2485973_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_043869818.1\|2486092_2487100_-	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_052453573.1\|2487160_2488027_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_043869819.1\|2488064_2488400_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_043869820.1\|2488587_2489958_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.8e-40	33.1

DBSCAN-SWA_5

3852837 : 3885782

Burkholderia_virus(28.57%)

integrase,transposase

attL 3852799:3852858|attR 3885763:3887078

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3852799:3852858	attL	NA	NA	NA	NA
WP_144401201.1\|3852837_3854060_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.6e-103	67.3
WP_043870794.1\|3854198_3854423_-	hypothetical protein	NA	NA	NA	NA
WP_043870795.1\|3854419_3855103_-	hypothetical protein	NA	NA	NA	NA
WP_139267219.1\|3855354_3855594_-	hypothetical protein	NA	NA	NA	NA
WP_043870796.1\|3855724_3856351_-	hypothetical protein	NA	NA	NA	NA
WP_043870798.1\|3856793_3857120_-	hypothetical protein	NA	NA	NA	NA
WP_043870799.1\|3857260_3857560_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_139267218.1\|3857580_3858342_+	hypothetical protein	NA	NA	NA	NA
WP_043870800.1\|3858739_3859930_+	nucleoside 2-deoxyribosyltransferase	NA	NA	NA	NA
WP_043870801.1\|3859926_3860514_+	7-cyano-7-deazaguanine synthase	NA	NA	NA	NA
WP_043870802.1\|3860672_3861845_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_043871960.1\|3861954_3862293_-	hypothetical protein	NA	NA	NA	NA
WP_043871961.1\|3863363_3863807_+	hypothetical protein	NA	NA	NA	NA
WP_043870803.1\|3864338_3865568_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_043870804.1\|3865658_3866528_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_043870805.1\|3866517_3867342_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_043870806.1\|3867377_3868145_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_043870807.1\|3868141_3869164_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	5.5e-20	46.6
WP_043870808.1\|3869219_3870089_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_043870809.1\|3870478_3870949_-	CYTH domain-containing protein	NA	NA	NA	NA
WP_043870810.1\|3871123_3871957_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_043870811.1\|3871953_3872952_+	ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_139267217.1\|3872894_3874226_+	organoarsenical effux MFS transporter ArsJ	NA	NA	NA	NA
WP_043870813.1\|3874222_3875242_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_043870814.1\|3875238_3875661_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	3.0e-33	52.6
WP_139267220.1\|3875671_3876364_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.4e-88	69.9
WP_043870816.1\|3876422_3876725_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_052453422.1\|3876721_3877912_+	MFS transporter	NA	NA	NA	NA
WP_017467736.1\|3878258_3878525_+	hypothetical protein	NA	NA	NA	NA
WP_007803330.1\|3878723_3879074_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_007803328.1\|3879137_3879989_+	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_043870817.1\|3880262_3881150_+\|integrase	site-specific integrase	S5W9T9	Leptospira_phage	6.0e-31	32.7
WP_043870818.1\|3881162_3882356_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_043870819.1\|3882596_3883847_+\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.2e-101	48.9
WP_144401201.1\|3884560_3885782_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.6e-103	67.3
3885763:3887078	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP004394

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP004394_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004394_1

3495-3575

Orphan

Consensus_repeat	Method
AATTGTCAGCTGACAATTTTTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP004394_1

>merge|NZ_CP004394|1|3495-3575|CRISPRCasFinder
AATTGTCAGCTGACAATTTTTCGTCCGGGGGAGGCGCGCGGCGGGAGGTGCTGCATCAATTGTCAGCTGACAATTTTGCGG

>NZ_CP004394|1|1|3495-3575|CRISPRCasFinder
AATTGTCAGCTGACAATTTTTCG	TCCGGGGGAGGCGCGCGGCGGGAGGTGCTGCATC
AATTGTCAGCTGACAATTTTGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004394.1\|WP_043872107.1\|7431_8319_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|184558
NZ_CP004394.1\|WP_043872111.1\|12491_13682_+\|formaldehyde-dehydrogenase,-glutathione-independent	unknown	unknown	gnl\|CDD\|274314
NZ_CP004394.1\|WP_139267221.1\|11346_12333_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP004394.1\|WP_043872106.1\|4703_7265_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223481
NZ_CP004394.1\|WP_043872109.1\|9277_10210_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP004394.1\|WP_043872200.1\|10227_10977_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP004394.1\|WP_043872105.1\|1175_2141_+\|plasmid-partitioning-protein-RepB	unknown	unknown	gnl\|CDD\|274586
NZ_CP004394.1\|WP_043872112.1\|14099_15383_-\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_CP004394.1\|WP_043872108.1\|8381_9239_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP004394.1\|WP_043872104.1\|0_1176_+\|plasmid-partitioning-protein-RepA	unknown	unknown	gnl\|CDD\|274585
NZ_CP004394.1\|WP_052453625.1\|4062_4536_-\|homoprotocatechuate-degradation-operon-regulator-HpaR	unknown	unknown	gnl\|CDD\|188209
NZ_CP004394.1\|WP_043872113.1\|15382_15988_-\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|377284

Protein	Function_ID	Function_description	E-value
NZ_CP004394.1\|WP_043872107.1\|7431_8319_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|184558	PRK14188, PRK14188, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	1.73549e-164
NZ_CP004394.1\|WP_043872111.1\|12491_13682_+\|formaldehyde-dehydrogenase,-glutathione-independent	gnl\|CDD\|274314	TIGR02819, formaldehyde_dehydrogenase_glutathione-independent, formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. [Central intermediary metabolism, One-carbon metabolism].	0
NZ_CP004394.1\|WP_139267221.1\|11346_12333_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.65296e-109
NZ_CP004394.1\|WP_043872106.1\|4703_7265_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223481	COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism].	3.83964e-97
NZ_CP004394.1\|WP_043872109.1\|9277_10210_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	5.75059e-121
NZ_CP004394.1\|WP_043872200.1\|10227_10977_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.23772e-96
NZ_CP004394.1\|WP_043872105.1\|1175_2141_+\|plasmid-partitioning-protein-RepB	gnl\|CDD\|274586	TIGR03454, partition_RepB, plasmid partitioning protein RepB. Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently. [Mobile and extrachromosomal element functions, Plasmid functions].	7.3095e-92
NZ_CP004394.1\|WP_043872112.1\|14099_15383_-\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	8.11226e-81
NZ_CP004394.1\|WP_043872108.1\|8381_9239_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	4.16333e-154
NZ_CP004394.1\|WP_043872104.1\|0_1176_+\|plasmid-partitioning-protein-RepA	gnl\|CDD\|274585	TIGR03453, partition_RepA, plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. [Mobile and extrachromosomal element functions, Plasmid functions].	0
NZ_CP004394.1\|WP_052453625.1\|4062_4536_-\|homoprotocatechuate-degradation-operon-regulator-HpaR	gnl\|CDD\|188209	TIGR02337, Homoprotocatechuate_degradative_operon_repressor., homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.	9.73733e-38
NZ_CP004394.1\|WP_043872113.1\|15382_15988_-\|TRAP-transporter-small-permease	gnl\|CDD\|377284	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component. The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.	2.08701e-12

>NZ_CP004394.1|WP_043872105.1|1175_2141_+|plasmid-partitioning-protein-RepB
MARKGILSTQIPQKADAKPQVKPRMMPQGAVGALQSSLSRLQENAVQDIDPTLIDEAGLEDRLGLDWTAQRQLEDSIRTYGQQVPVLLRPNPARPGRYEIVYGRRRLIALKAIGQPVKAMIRQLDDQALVMAQGQENTARQDLSFIEKANFAAQLQEAGYDRQTIAAALSMDLPMVSRMLKVGTAFKTEFLRKIGSAPSIGRERWMLLVKCFEEDPSARTRARTATAQLEFSSLSSDDRFETVLARAQGGPAPSPAPSDSVKRQVIAEDGQTLAEVKATRRGTAVTFPAREDEGFATWIAENADDLVQELHARWQQGRAED
>NZ_CP004394.1|WP_043872104.1|0_1176_+|plasmid-partitioning-protein-RepA
MRDAIQINQRVRENAENLSAALESHMLSVFAPDARKELRRFSAGEAAELLGISASFLRKLHFDGKVPEVHTSPGGRRHYTASDIRDIRRVLEASAKTPGAYLKGRRAGDKVQVLSFLNFKGGSGKTTSAVHTAQRLALKGYRVLCVDIDPQASLTTLFGYRPEVDFLESGTIYDAIRYEDPVPFSAIVQETFFTGIDLAPAGLMLQEFEHETPRALMHNIQPPFFSRMAAALQEVESHYDVIIFDCPPQLGYLTMSALCASTGVLITIVPNMLDVASMSQFLQMSADLLDVVSNAGAGMDFDFLRFLINRYEPNDGPQQQVVAFLRQLFSQEVMVSAMLKSTAISDAGLTHQTVYEVDRSQFNRNTYDRAVDSLNAVNDEIESLLQTSWRR
>NZ_CP004394.1|WP_052453625.1|4062_4536_-|homoprotocatechuate-degradation-operon-regulator-HpaR
MQEPPKHGTAPPESAPRISGTLPVALLRAREGVMDRFRPMLAAHDVTEPQWRVLRVLAEFGETEAGPLATRAGLLAPSLTRIMRRLEARGFLHTRREAEDRRRRIVSLTAEGQSFLDRLAPQNARILAEIEEAVGRERIGTLLDEIEDLLAALGAAE
>NZ_CP004394.1|WP_043872106.1|4703_7265_-|FAD-dependent-oxidoreductase
MSAFPNRANVVIVGLGGIVGASVAHHLIENGWDGIVGIDKSGIPTDIGSTAHASDFCYATSHDLLSTWSTMYSMDFYEKMGHYARIGGLEVARVGDDERMAELKRRVDSGRAFGTNVRMISAAEAKEKFPLLEEDQIQGAMWDPDAGLVIPRSQTVAGKLVDAGVAAGKLTAFANTSALELISEDGRITGVKTTRGTIMADHVVVCAGLWGRLIAEMAGEDLPVMPVDHPLTFFGPYDAFAGTGKEIGYPLLRDQGNSAYLRDTGDPKSTEGGQIEWGYYYEKNPRLVHPREILEKDQARLSPSQRDLELEDVIEPLERAMELTPILGDLGFNESHSFNGLLQTTTDGGPSMGESRKLRGLWYAVAIWVKDGPGMGKLIADWMTHGRTHIDHHAIDYARFNDFQLDPEFIRGRCEETAAKIYNPPVHTREPFANGRGIRRSPFHEREVELGGYFMELGGWERAHGYAANEHLLEKYADQVPVRENEWDNRHFWRVSNAEQLEMSADCGLINLSHFHMTDIAGPDHVALMEYLCAAKIGGEATIGKGIYTHMLDDEGNVRADFTVFRMEDRCRLVNGADAGPRDLVYMRRMAQDRGLDVTITDVTEDYTTIGIWGPNARETLKKVVAEPERLEVENFPFAAIRTIEIAGRKVSAFRISYVGEQGWELHMRYEDGLAVWDALRATGIIAVGVETYANSRRLEKSLRLQNADLITQYNLYEADLARPKVKEAEFRGKEKHLEYRARAHQPAMLCTLVMTDNIDSTGVARYPVGSQPVLDPATGETLVDALGRRSYTTSIAFGPSIGRNIALAYLPWDYCEVGRKLEISYFDEVYPVEVAGVGYAPLYDPQNLKPRS
>NZ_CP004394.1|WP_043872107.1|7431_8319_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MTAHLIDGKAFAAGLGDRIAAGASDFAARTGRAPGLAVVLVGTDPASEIYVRSKGRMARKLGMESFEHRLPADTTQEELLALVAGLNADAAVDGILVQLPLPSPLDSRAVIEAIDPGKDVDGLHPLSAGHLVAGLPGLVSCTPLGCLMLLRETLGSLAGLDAIVIGRSILVGKPMAQLLLAENCTVTMAHSRSRDLPEKVARADIVVAAVGQAEMIRGEWIKPGATVIDVGTSRVLRDGRTLLVGDVDFAAAAERARAITPVPGGVGPMTIMSLMHNTLVAACRRRGLPVPDLDG
>NZ_CP004394.1|WP_043872108.1|8381_9239_-|formyltetrahydrofolate-deformylase
MSSSSYILRIACDDQRGIVAAVTSAMSARGANIAESNQFWDRQTNKFFLRMACLFPEQTSKDAVELALKPAVDRFDLKLKVEDQTRRPRIVIMVSKFDHAMLHLLYQIKVGWLDAEVAAIVSNHEDARKVAEQEGIPFHYWPVNKDNKAEQEDRLAALVQETGAELIILARYMQVLTNELSNRFYGMIINIHHSFLPSFKGAKPYHQAHERGVKLIGATAHYVTPDLDEGPIIEQETERVSHSMSAEDFVATGRDIESRVLARAVKFHLEGRVMLNDNRTVVFIP
>NZ_CP004394.1|WP_043872109.1|9277_10210_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MAILLFADHDNATLSDQTARTLTAAAQIGGEIDILIAGKDAAAAAAAAAKLAGVRKVLVAESDALEHRLAEPSAALIVSLAGDYDTILAPATTTGKNVLPRVAALLDVMQVSEVTEIVAPDTFKRPIYAGNAVEVVQSTDRIRVLTLRTAGFAAAAEGGSAPVAAVDVPAEGADLSRFVENILSQSDRPELTSAKIIVSGGRALGSEEKFREVITPLADRLGGAIGASRAAVDAGYAPNDLQVGQTGKVVAPDLYIACGISGAIQHLAGMKDSRIIVAINTDEDAPIFQVADYGLVGDLFEVVPELERQL
>NZ_CP004394.1|WP_043872200.1|10227_10977_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MKVLVPVKRVVDYNVKIRVRADRTGVDLSNVKMSMNPFDEIAVEEAVRLKEAGKADEVVAVSIGPAQAQDVLRTALAMGADRAILIAAEGPVEPLAVAKLLRAVVSAEAPGLVILGKQAIDDDANQTGQMLSALLGWPQATFASEIALGDGTAKVTREVDGGLQAIEVTLPAVVTADLRLNEPRYASLPNIMKAKKKPLETKTPEEFGVTVERRLTVLRVEEPVQRQAGIRLATPAELIEKLRAEAGVI
>NZ_CP004394.1|WP_139267221.1|11346_12333_+|helix-turn-helix-domain-containing-protein
MKPRAEGPRLSVGFILAKRFTLCAFANFVDVLRLAADEGDRSRPILCSWTVLSDTMDPVASSSGITVQPKERLGDPRRFDYIVVVGGLMDETPSLGPAYHQFLHRAAAAGIPLVGVCTGAFFLHQAGLLDGYRCCVSWFHHSDFLEEFEGLDPVADQIFVVDRDRLTCSGGASSAHLAAYLVDKHVGRAQASKSLHIMIIDDALQAEKPQPGLPLDLKTRDPIVQRALLLMQQNIDTPISVQDIAQKMGNSKRQIERHFRLALDTSPQAAFLDMRLDFARHLVENSQKSVAQIAVDCGFCDSSHLSRMFRRRYGCTPQSFRRPVAVQD
>NZ_CP004394.1|WP_043872111.1|12491_13682_+|formaldehyde-dehydrogenase,-glutathione-independent
MSSNRGVVYVGPGKVEVRDIPDPVMSAPDDGRKLDHAVILKVVSTNICGSDQHMVRGRTTAPAGLVLGHEITGEVIEKGSDVEMLEIGDIVSVPFNVACGRCRCCREQDTGVCLTVNPARAGGAYGYVDMGGWVGGQARYVMVPYADFNLLKFPDRDQALERIRDLTMLSDILPTGFHGAVSAGVGVGSVVYVAGAGPVGLAAAASAQILGAAVVMVGDFNRERLDHAEKMGFAPVDLNAGDRLGEMIAEITGSPEVDAAIDAVGFEARGHAGGEQPAIVLNQMMEITRPAGDIGIPGLYVTEDPGAVDDAAKVGSLSLRFGLGWAKAQSFHTGQTPVLRYNRQLMQAILHGRLPIADIVNAQVISLEDAAQGYEAFDHGAAKKFVLDPHGMLKAG
>NZ_CP004394.1|WP_043872112.1|14099_15383_-|TRAP-transporter-large-permease
MEITVGFLLLAVLLIVGLPVSVALALAGGVGLYLVGGLQLATGILATTPLGAVHSYEFVMIPMFILMANFIVASGISEEMFDIAKKWMGRTPGGLAHATALTGAAFGAISGSSTAAAATLASTTIPGMVKQGYDTRLASGVVAISGTLAMLIPPSGAMIIYALLADMSVAKLLIAGVVPGILVTLAIMLTILFLVWRNPEHAPAAQSYGWWEKIASLRHAWSFILLFSMVTVVIYTGVGTPTEASAMGALGAFLLALLRGTSFRQFVQAGVSTLEASCMIAMIFLGAQVFVYFLTMTQATQSLVGWLVDSQIPSLAILIAILAIYLILGCFMDLIAMLILTVPIVTPLMLQLGYDPIWFAVITIVMGEIGVLTPPLGINVFVISKYTRLPVGEVFRGAFPHVIAHLILVALLVAFPELVLWLPSTMN
>NZ_CP004394.1|WP_043872113.1|15382_15988_-|TRAP-transporter-small-permease
MSEKQGSPPRGPFGPGGVLDTAVRQVETVLLYLLCLVLFVMMVLIAADALGRYSMNRPLTFTVDLVTMYLLPAAMLLPAGLVLRRGGHIGVDLFAMMMPRRLYHALIGLGLLASAPIFWIMTHRIALMASDSLSQKLVATGMVPWPIWAEQAIFALAMGLFTLRALHIGVSQLVAAVTGDSAQAISILPDGDTREHSEEAV

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Crispr_ID: NZ_CP004394_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP004394_2

3651-3816

Orphan

Consensus_repeat	Method
AATTGTCAGCTGACAATTTTTCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP004394_2

>merge|NZ_CP004394|2|3651-3816|CRISPRCasFinder
GATTGTCAGCTGACAATTTTCAGGATGGATGAGATCTATTTCCACCGCCACCCCCTCCCGGACGGCCCACGGCCGGCCGAAATTGTCAGCTGACAATTTCTGGCTCCGACGAAAAATGCCCACGATCGCGACGGGACGACGCCGATTGTCAGCTGACAATTTTTGC

>NZ_CP004394|2|2|3651-3816|CRISPRCasFinder
GATTGTCAGCTGACAATTTTCAG	GATGGATGAGATCTATTTCCACCGCCACCCCCTCCCGGACGGCCCACGGCCGGCCGA
AATTGTCAGCTGACAATTTCTGG	CTCCGACGAAAAATGCCCACGATCGCGACGGGACGACGCC
GATTGTCAGCTGACAATTTTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP004394.1\|WP_043872107.1\|7431_8319_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|184558
NZ_CP004394.1\|WP_043872111.1\|12491_13682_+\|formaldehyde-dehydrogenase,-glutathione-independent	unknown	unknown	gnl\|CDD\|274314
NZ_CP004394.1\|WP_139267221.1\|11346_12333_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP004394.1\|WP_043872106.1\|4703_7265_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223481
NZ_CP004394.1\|WP_043872109.1\|9277_10210_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP004394.1\|WP_043872200.1\|10227_10977_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP004394.1\|WP_043872105.1\|1175_2141_+\|plasmid-partitioning-protein-RepB	unknown	unknown	gnl\|CDD\|274586
NZ_CP004394.1\|WP_043872104.1\|0_1176_+\|plasmid-partitioning-protein-RepA	unknown	unknown	gnl\|CDD\|274585
NZ_CP004394.1\|WP_052453624.1\|2316_3507_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184349
NZ_CP004394.1\|WP_043872108.1\|8381_9239_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP004394.1\|WP_043872112.1\|14099_15383_-\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_CP004394.1\|WP_052453625.1\|4062_4536_-\|homoprotocatechuate-degradation-operon-regulator-HpaR	unknown	unknown	gnl\|CDD\|188209
NZ_CP004394.1\|WP_043872113.1\|15382_15988_-\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|377284

Protein	Function_ID	Function_description	E-value
NZ_CP004394.1\|WP_043872107.1\|7431_8319_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|184558	PRK14188, PRK14188, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	1.73549e-164
NZ_CP004394.1\|WP_043872111.1\|12491_13682_+\|formaldehyde-dehydrogenase,-glutathione-independent	gnl\|CDD\|274314	TIGR02819, formaldehyde_dehydrogenase_glutathione-independent, formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. [Central intermediary metabolism, One-carbon metabolism].	0
NZ_CP004394.1\|WP_139267221.1\|11346_12333_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.65296e-109
NZ_CP004394.1\|WP_043872106.1\|4703_7265_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223481	COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism].	3.83964e-97
NZ_CP004394.1\|WP_043872109.1\|9277_10210_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	5.75059e-121
NZ_CP004394.1\|WP_043872200.1\|10227_10977_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.23772e-96
NZ_CP004394.1\|WP_043872105.1\|1175_2141_+\|plasmid-partitioning-protein-RepB	gnl\|CDD\|274586	TIGR03454, partition_RepB, plasmid partitioning protein RepB. Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently. [Mobile and extrachromosomal element functions, Plasmid functions].	7.3095e-92
NZ_CP004394.1\|WP_043872104.1\|0_1176_+\|plasmid-partitioning-protein-RepA	gnl\|CDD\|274585	TIGR03453, partition_RepA, plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. [Mobile and extrachromosomal element functions, Plasmid functions].	0
NZ_CP004394.1\|WP_052453624.1\|2316_3507_+\|hypothetical-protein	gnl\|CDD\|184349	PRK13824, PRK13824, replication initiation protein RepC; Provisional.	1.55237e-79
NZ_CP004394.1\|WP_043872108.1\|8381_9239_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	4.16333e-154
NZ_CP004394.1\|WP_043872112.1\|14099_15383_-\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	8.11226e-81
NZ_CP004394.1\|WP_052453625.1\|4062_4536_-\|homoprotocatechuate-degradation-operon-regulator-HpaR	gnl\|CDD\|188209	TIGR02337, Homoprotocatechuate_degradative_operon_repressor., homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.	9.73733e-38
NZ_CP004394.1\|WP_043872113.1\|15382_15988_-\|TRAP-transporter-small-permease	gnl\|CDD\|377284	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component. The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.	2.08701e-12

>NZ_CP004394.1|WP_052453624.1|2316_3507_+|hypothetical-protein
MRHATDFSIGRPVSACLPTGSAGQAPADSPDKWALLTTFTAAVPEYGLSHRAVTVLRALLSFFPKRELPAGKGAAIVFPSNTTLSERLGGMPESTLRRHLRQLVDTGFIARHDSPNGKRFARALGTEIRAAFGFDLSPLARRAGELAQVAARLTRRAEEIALLRAAILAHRNDLLTLCEVQGRDPAAFAALLDFTRLMLRRKVGPEELRALDTRLSATIATLAAPQDPVETAGEIPSETPETSVSNSENERHIQTEKKSVSDSEGRGRDRTRSENDTGPHRAPPLQLQDIPTTFPTFSEFFPEKIVSWQMLRDRTELLIPMLGIDRPVHVEARRGMGEDTASLVVLCILERFAEIDAPGAYLRRLSRLAARGLFDVVPMLAAQRARVAQAAGKIVS
>NZ_CP004394.1|WP_043872105.1|1175_2141_+|plasmid-partitioning-protein-RepB
MARKGILSTQIPQKADAKPQVKPRMMPQGAVGALQSSLSRLQENAVQDIDPTLIDEAGLEDRLGLDWTAQRQLEDSIRTYGQQVPVLLRPNPARPGRYEIVYGRRRLIALKAIGQPVKAMIRQLDDQALVMAQGQENTARQDLSFIEKANFAAQLQEAGYDRQTIAAALSMDLPMVSRMLKVGTAFKTEFLRKIGSAPSIGRERWMLLVKCFEEDPSARTRARTATAQLEFSSLSSDDRFETVLARAQGGPAPSPAPSDSVKRQVIAEDGQTLAEVKATRRGTAVTFPAREDEGFATWIAENADDLVQELHARWQQGRAED
>NZ_CP004394.1|WP_043872104.1|0_1176_+|plasmid-partitioning-protein-RepA
MRDAIQINQRVRENAENLSAALESHMLSVFAPDARKELRRFSAGEAAELLGISASFLRKLHFDGKVPEVHTSPGGRRHYTASDIRDIRRVLEASAKTPGAYLKGRRAGDKVQVLSFLNFKGGSGKTTSAVHTAQRLALKGYRVLCVDIDPQASLTTLFGYRPEVDFLESGTIYDAIRYEDPVPFSAIVQETFFTGIDLAPAGLMLQEFEHETPRALMHNIQPPFFSRMAAALQEVESHYDVIIFDCPPQLGYLTMSALCASTGVLITIVPNMLDVASMSQFLQMSADLLDVVSNAGAGMDFDFLRFLINRYEPNDGPQQQVVAFLRQLFSQEVMVSAMLKSTAISDAGLTHQTVYEVDRSQFNRNTYDRAVDSLNAVNDEIESLLQTSWRR
>NZ_CP004394.1|WP_052453625.1|4062_4536_-|homoprotocatechuate-degradation-operon-regulator-HpaR
MQEPPKHGTAPPESAPRISGTLPVALLRAREGVMDRFRPMLAAHDVTEPQWRVLRVLAEFGETEAGPLATRAGLLAPSLTRIMRRLEARGFLHTRREAEDRRRRIVSLTAEGQSFLDRLAPQNARILAEIEEAVGRERIGTLLDEIEDLLAALGAAE
>NZ_CP004394.1|WP_043872106.1|4703_7265_-|FAD-dependent-oxidoreductase
MSAFPNRANVVIVGLGGIVGASVAHHLIENGWDGIVGIDKSGIPTDIGSTAHASDFCYATSHDLLSTWSTMYSMDFYEKMGHYARIGGLEVARVGDDERMAELKRRVDSGRAFGTNVRMISAAEAKEKFPLLEEDQIQGAMWDPDAGLVIPRSQTVAGKLVDAGVAAGKLTAFANTSALELISEDGRITGVKTTRGTIMADHVVVCAGLWGRLIAEMAGEDLPVMPVDHPLTFFGPYDAFAGTGKEIGYPLLRDQGNSAYLRDTGDPKSTEGGQIEWGYYYEKNPRLVHPREILEKDQARLSPSQRDLELEDVIEPLERAMELTPILGDLGFNESHSFNGLLQTTTDGGPSMGESRKLRGLWYAVAIWVKDGPGMGKLIADWMTHGRTHIDHHAIDYARFNDFQLDPEFIRGRCEETAAKIYNPPVHTREPFANGRGIRRSPFHEREVELGGYFMELGGWERAHGYAANEHLLEKYADQVPVRENEWDNRHFWRVSNAEQLEMSADCGLINLSHFHMTDIAGPDHVALMEYLCAAKIGGEATIGKGIYTHMLDDEGNVRADFTVFRMEDRCRLVNGADAGPRDLVYMRRMAQDRGLDVTITDVTEDYTTIGIWGPNARETLKKVVAEPERLEVENFPFAAIRTIEIAGRKVSAFRISYVGEQGWELHMRYEDGLAVWDALRATGIIAVGVETYANSRRLEKSLRLQNADLITQYNLYEADLARPKVKEAEFRGKEKHLEYRARAHQPAMLCTLVMTDNIDSTGVARYPVGSQPVLDPATGETLVDALGRRSYTTSIAFGPSIGRNIALAYLPWDYCEVGRKLEISYFDEVYPVEVAGVGYAPLYDPQNLKPRS
>NZ_CP004394.1|WP_043872107.1|7431_8319_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MTAHLIDGKAFAAGLGDRIAAGASDFAARTGRAPGLAVVLVGTDPASEIYVRSKGRMARKLGMESFEHRLPADTTQEELLALVAGLNADAAVDGILVQLPLPSPLDSRAVIEAIDPGKDVDGLHPLSAGHLVAGLPGLVSCTPLGCLMLLRETLGSLAGLDAIVIGRSILVGKPMAQLLLAENCTVTMAHSRSRDLPEKVARADIVVAAVGQAEMIRGEWIKPGATVIDVGTSRVLRDGRTLLVGDVDFAAAAERARAITPVPGGVGPMTIMSLMHNTLVAACRRRGLPVPDLDG
>NZ_CP004394.1|WP_043872108.1|8381_9239_-|formyltetrahydrofolate-deformylase
MSSSSYILRIACDDQRGIVAAVTSAMSARGANIAESNQFWDRQTNKFFLRMACLFPEQTSKDAVELALKPAVDRFDLKLKVEDQTRRPRIVIMVSKFDHAMLHLLYQIKVGWLDAEVAAIVSNHEDARKVAEQEGIPFHYWPVNKDNKAEQEDRLAALVQETGAELIILARYMQVLTNELSNRFYGMIINIHHSFLPSFKGAKPYHQAHERGVKLIGATAHYVTPDLDEGPIIEQETERVSHSMSAEDFVATGRDIESRVLARAVKFHLEGRVMLNDNRTVVFIP
>NZ_CP004394.1|WP_043872109.1|9277_10210_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MAILLFADHDNATLSDQTARTLTAAAQIGGEIDILIAGKDAAAAAAAAAKLAGVRKVLVAESDALEHRLAEPSAALIVSLAGDYDTILAPATTTGKNVLPRVAALLDVMQVSEVTEIVAPDTFKRPIYAGNAVEVVQSTDRIRVLTLRTAGFAAAAEGGSAPVAAVDVPAEGADLSRFVENILSQSDRPELTSAKIIVSGGRALGSEEKFREVITPLADRLGGAIGASRAAVDAGYAPNDLQVGQTGKVVAPDLYIACGISGAIQHLAGMKDSRIIVAINTDEDAPIFQVADYGLVGDLFEVVPELERQL
>NZ_CP004394.1|WP_043872200.1|10227_10977_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MKVLVPVKRVVDYNVKIRVRADRTGVDLSNVKMSMNPFDEIAVEEAVRLKEAGKADEVVAVSIGPAQAQDVLRTALAMGADRAILIAAEGPVEPLAVAKLLRAVVSAEAPGLVILGKQAIDDDANQTGQMLSALLGWPQATFASEIALGDGTAKVTREVDGGLQAIEVTLPAVVTADLRLNEPRYASLPNIMKAKKKPLETKTPEEFGVTVERRLTVLRVEEPVQRQAGIRLATPAELIEKLRAEAGVI
>NZ_CP004394.1|WP_139267221.1|11346_12333_+|helix-turn-helix-domain-containing-protein
MKPRAEGPRLSVGFILAKRFTLCAFANFVDVLRLAADEGDRSRPILCSWTVLSDTMDPVASSSGITVQPKERLGDPRRFDYIVVVGGLMDETPSLGPAYHQFLHRAAAAGIPLVGVCTGAFFLHQAGLLDGYRCCVSWFHHSDFLEEFEGLDPVADQIFVVDRDRLTCSGGASSAHLAAYLVDKHVGRAQASKSLHIMIIDDALQAEKPQPGLPLDLKTRDPIVQRALLLMQQNIDTPISVQDIAQKMGNSKRQIERHFRLALDTSPQAAFLDMRLDFARHLVENSQKSVAQIAVDCGFCDSSHLSRMFRRRYGCTPQSFRRPVAVQD
>NZ_CP004394.1|WP_043872111.1|12491_13682_+|formaldehyde-dehydrogenase,-glutathione-independent
MSSNRGVVYVGPGKVEVRDIPDPVMSAPDDGRKLDHAVILKVVSTNICGSDQHMVRGRTTAPAGLVLGHEITGEVIEKGSDVEMLEIGDIVSVPFNVACGRCRCCREQDTGVCLTVNPARAGGAYGYVDMGGWVGGQARYVMVPYADFNLLKFPDRDQALERIRDLTMLSDILPTGFHGAVSAGVGVGSVVYVAGAGPVGLAAAASAQILGAAVVMVGDFNRERLDHAEKMGFAPVDLNAGDRLGEMIAEITGSPEVDAAIDAVGFEARGHAGGEQPAIVLNQMMEITRPAGDIGIPGLYVTEDPGAVDDAAKVGSLSLRFGLGWAKAQSFHTGQTPVLRYNRQLMQAILHGRLPIADIVNAQVISLEDAAQGYEAFDHGAAKKFVLDPHGMLKAG
>NZ_CP004394.1|WP_043872112.1|14099_15383_-|TRAP-transporter-large-permease
MEITVGFLLLAVLLIVGLPVSVALALAGGVGLYLVGGLQLATGILATTPLGAVHSYEFVMIPMFILMANFIVASGISEEMFDIAKKWMGRTPGGLAHATALTGAAFGAISGSSTAAAATLASTTIPGMVKQGYDTRLASGVVAISGTLAMLIPPSGAMIIYALLADMSVAKLLIAGVVPGILVTLAIMLTILFLVWRNPEHAPAAQSYGWWEKIASLRHAWSFILLFSMVTVVIYTGVGTPTEASAMGALGAFLLALLRGTSFRQFVQAGVSTLEASCMIAMIFLGAQVFVYFLTMTQATQSLVGWLVDSQIPSLAILIAILAIYLILGCFMDLIAMLILTVPIVTPLMLQLGYDPIWFAVITIVMGEIGVLTPPLGINVFVISKYTRLPVGEVFRGAFPHVIAHLILVALLVAFPELVLWLPSTMN
>NZ_CP004394.1|WP_043872113.1|15382_15988_-|TRAP-transporter-small-permease
MSEKQGSPPRGPFGPGGVLDTAVRQVETVLLYLLCLVLFVMMVLIAADALGRYSMNRPLTFTVDLVTMYLLPAAMLLPAGLVLRRGGHIGVDLFAMMMPRRLYHALIGLGLLASAPIFWIMTHRIALMASDSLSQKLVATGMVPWPIWAEQAIFALAMGLFTLRALHIGVSQLVAAVTGDSAQAISILPDGDTREHSEEAV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP004394_1	1.1\|3518\|34\|NZ_CP004394\|CRISPRCasFinder	3518-3551	34	NZ_CP004394	Celeribacter indicus strain P73 plasmid pP73A, complete sequence	3518-3551	1.0
NZ_CP004394_2	2.1\|3674\|57\|NZ_CP004394\|CRISPRCasFinder	3674-3730	57	NZ_CP004394	Celeribacter indicus strain P73 plasmid pP73A, complete sequence	3674-3730	1.0
NZ_CP004394_2	2.2\|3754\|40\|NZ_CP004394\|CRISPRCasFinder	3754-3793	40	NZ_CP004394	Celeribacter indicus strain P73 plasmid pP73A, complete sequence	3754-3793	1.0

1. spacer 1.1|3518|34|NZ_CP004394|CRISPRCasFinder matches to NZ_CP004394 (Celeribacter indicus strain P73 plasmid pP73A, complete sequence) position: , mismatch: 0, identity: 1.0

tccgggggaggcgcgcggcgggaggtgctgcatc	CRISPR spacer
tccgggggaggcgcgcggcgggaggtgctgcatc	Protospacer
**********************************

2. spacer 2.1|3674|57|NZ_CP004394|CRISPRCasFinder matches to NZ_CP004394 (Celeribacter indicus strain P73 plasmid pP73A, complete sequence) position: , mismatch: 0, identity: 1.0

gatggatgagatctatttccaccgccaccccctcccggacggcccacggccggccga	CRISPR spacer
gatggatgagatctatttccaccgccaccccctcccggacggcccacggccggccga	Protospacer
*********************************************************

3. spacer 2.2|3754|40|NZ_CP004394|CRISPRCasFinder matches to NZ_CP004394 (Celeribacter indicus strain P73 plasmid pP73A, complete sequence) position: , mismatch: 0, identity: 1.0

ctccgacgaaaaatgcccacgatcgcgacgggacgacgcc	CRISPR spacer
ctccgacgaaaaatgcccacgatcgcgacgggacgacgcc	Protospacer
****************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP004396

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP004397

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP004393

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP004394

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection