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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010431 Pandoraea sputorum strain DSM 21091 chromosome, complete genome 2 crisprs DEDDh,WYL,DinG,csa3 0 1 2 0

Results visualization

1. NZ_CP010431
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010431_1 3016916-3017013 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010431_2 3127382-3127509 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 KT281796 Mycobacterium phage Zakhe101, complete genome 48171-48196 3 0.885
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 JN698993 Mycobacterium phage Firecracker, complete genome 48325-48350 3 0.885
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 KJ829260 Mycobacterium phage YungJamal, complete genome 49387-49412 3 0.885
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 NC_022325 Mycobacterium phage Dylan, complete genome 48167-48192 3 0.885
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 MN428052 Mycobacterium phage Smooch, complete genome 49666-49691 3 0.885
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 KY130461 Mycobacterium phage Taptic, complete genome 42664-42689 3 0.885
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 MH001446 Mycobacterium phage Megabear, complete genome 42664-42689 3 0.885
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 AP018462 Mycobacterium phage D12 DNA, complete genome 43291-43316 3 0.885
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 MK494131 Mycobacterium phage GodPhather, complete genome 43507-43532 3 0.885
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 MK494114 Mycobacterium phage Argie, complete genome 43028-43053 3 0.885
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 MK494132 Mycobacterium phage Cepens, complete genome 42743-42768 3 0.885
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 AP018463 Mycobacterium phage PR DNA, complete genome 43268-43293 3 0.885
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 MH001450 Mycobacterium phage Jeon, complete genome 43249-43274 3 0.885
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 AY129335 Mycobacterium virus Corndog, complete genome 48971-48996 4 0.846
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 NC_004685 Mycobacterium phage Corndog, complete genome 48971-48996 4 0.846
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 NZ_LR723676 Rhizobium sp. TCK plasmid 2 102732-102757 5 0.808
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 NC_020894 Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence 73925-73950 5 0.808
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 NC_017766 Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence 73926-73951 5 0.808
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 LR743529 Xanthomonas phage Sopo genome assembly, chromosome: 1 7869-7894 5 0.808
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 LR743528 Xanthomonas phage Tabio genome assembly, chromosome: 1 7583-7608 5 0.808
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 LR743531 Xanthomonas phage Tenjo genome assembly, chromosome: 1 7622-7647 5 0.808
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 NC_005342 Burkholderia phage Bcep43, complete genome 47135-47160 6 0.769
NZ_CP010431_2 2.1|3127404|26|NZ_CP010431|PILER-CR 3127404-3127429 26 AY368235 Burkholderia cepacia phage Bcep43, complete genome 47135-47160 6 0.769

1. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to KT281796 (Mycobacterium phage Zakhe101, complete genome) position: , mismatch: 3, identity: 0.885

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcaccctcgtcggcttccgccg	Protospacer
******* ***.************ *

2. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to JN698993 (Mycobacterium phage Firecracker, complete genome) position: , mismatch: 3, identity: 0.885

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcaccctcgtcggcttccgccg	Protospacer
******* ***.************ *

3. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to KJ829260 (Mycobacterium phage YungJamal, complete genome) position: , mismatch: 3, identity: 0.885

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcaccctcgtcggcttccgccg	Protospacer
******* ***.************ *

4. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to NC_022325 (Mycobacterium phage Dylan, complete genome) position: , mismatch: 3, identity: 0.885

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcaccctcgtcggcttccgccg	Protospacer
******* ***.************ *

5. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to MN428052 (Mycobacterium phage Smooch, complete genome) position: , mismatch: 3, identity: 0.885

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcaccctcgtcggcttccgccg	Protospacer
******* ***.************ *

6. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to KY130461 (Mycobacterium phage Taptic, complete genome) position: , mismatch: 3, identity: 0.885

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcaccctcgtcggcttccgccg	Protospacer
******* ***.************ *

7. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to MH001446 (Mycobacterium phage Megabear, complete genome) position: , mismatch: 3, identity: 0.885

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcaccctcgtcggcttccgccg	Protospacer
******* ***.************ *

8. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to AP018462 (Mycobacterium phage D12 DNA, complete genome) position: , mismatch: 3, identity: 0.885

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcaccctcgtcggcttccgccg	Protospacer
******* ***.************ *

9. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to MK494131 (Mycobacterium phage GodPhather, complete genome) position: , mismatch: 3, identity: 0.885

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcaccctcgtcggcttccgccg	Protospacer
******* ***.************ *

10. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to MK494114 (Mycobacterium phage Argie, complete genome) position: , mismatch: 3, identity: 0.885

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcaccctcgtcggcttccgccg	Protospacer
******* ***.************ *

11. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to MK494132 (Mycobacterium phage Cepens, complete genome) position: , mismatch: 3, identity: 0.885

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcaccctcgtcggcttccgccg	Protospacer
******* ***.************ *

12. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to AP018463 (Mycobacterium phage PR DNA, complete genome) position: , mismatch: 3, identity: 0.885

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcaccctcgtcggcttccgccg	Protospacer
******* ***.************ *

13. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to MH001450 (Mycobacterium phage Jeon, complete genome) position: , mismatch: 3, identity: 0.885

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcaccctcgtcggcttccgccg	Protospacer
******* ***.************ *

14. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to AY129335 (Mycobacterium virus Corndog, complete genome) position: , mismatch: 4, identity: 0.846

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcatcctcgtcggcttccgcct	Protospacer
******* ***.************  

15. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to NC_004685 (Mycobacterium phage Corndog, complete genome) position: , mismatch: 4, identity: 0.846

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agccgcatcctcgtcggcttccgcct	Protospacer
******* ***.************  

16. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to NZ_LR723676 (Rhizobium sp. TCK plasmid 2) position: , mismatch: 5, identity: 0.808

agccgcagccttgtcggcttccgcgg	CRISPR spacer
ataggcagccttgtcggcttcggcga	Protospacer
*   ***************** ***.

17. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to NC_020894 (Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence) position: , mismatch: 5, identity: 0.808

agccgcagccttgtcggcttccgcgg	CRISPR spacer
cgccgccgccttgtcggctttcgcct	Protospacer
 ***** *************.***  

18. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to NC_017766 (Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence) position: , mismatch: 5, identity: 0.808

agccgcagccttgtcggcttccgcgg	CRISPR spacer
cgccgccgccttgtcggctttcgcct	Protospacer
 ***** *************.***  

19. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to LR743529 (Xanthomonas phage Sopo genome assembly, chromosome: 1) position: , mismatch: 5, identity: 0.808

agccgcagccttgtcggcttccgcgg	CRISPR spacer
gcccttggccttgtcggcttccgcgg	Protospacer
. ** ..*******************

20. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to LR743528 (Xanthomonas phage Tabio genome assembly, chromosome: 1) position: , mismatch: 5, identity: 0.808

agccgcagccttgtcggcttccgcgg	CRISPR spacer
gcccttggccttgtcggcttccgcgg	Protospacer
. ** ..*******************

21. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to LR743531 (Xanthomonas phage Tenjo genome assembly, chromosome: 1) position: , mismatch: 5, identity: 0.808

agccgcagccttgtcggcttccgcgg	CRISPR spacer
gcccttggccttgtcggcttccgcgg	Protospacer
. ** ..*******************

22. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to NC_005342 (Burkholderia phage Bcep43, complete genome) position: , mismatch: 6, identity: 0.769

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agctgcagccttgtcggcttcgattt	Protospacer
***.***************** ..  

23. spacer 2.1|3127404|26|NZ_CP010431|PILER-CR matches to AY368235 (Burkholderia cepacia phage Bcep43, complete genome) position: , mismatch: 6, identity: 0.769

agccgcagccttgtcggcttccgcgg	CRISPR spacer
agctgcagccttgtcggcttcgattt	Protospacer
***.***************** ..  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2151970 : 2171958 22 Burkholderia_phage(41.18%) plate,holin NA
DBSCAN-SWA_2 5254217 : 5290302 45 Burkholderia_phage(40.0%) plate,integrase,holin,capsid,terminase,portal,tail,head,protease attL 5251286:5251331|attR 5289648:5289693
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage