CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP009857	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-d0d, complete sequence	0 crisprs	DEDDh	0	3
NZ_CP009855	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence	1 crisprs	NA	1	1
NZ_CP009854	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5, complete genome	3 crisprs	DEDDh,csa3,WYL,DinG,cas3,c2c9_V-U4	0	5
NZ_CP009856	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-784, complete sequence	0 crisprs	csa3	0	2
NZ_CP009858	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pKPC-47e, complete sequence	0 crisprs	NA	0	4

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009854_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009854_1

1542004-1542117

Orphan

Consensus_repeat	Method
GCCGGGTAAACGCAGTGTCACCCGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009854_1

>merge|NZ_CP009854|1|1542004-1542117|CRISPRCasFinder
GCCGGGTAAACGCAGTGTCACCCGGCAAAAAGCCCGGTGGCGCTAACGCTTACCGGGCCTACGAAGAGCCAACATGTACAAAGTAGGCCGGGTAAACGCAGTGCCACCCGGCAA

>NZ_CP009854|1|1|1542004-1542117|CRISPRCasFinder
GCCGGGTAAACGCAGTGTCACCCGGCAA	AAAGCCCGGTGGCGCTAACGCTTACCGGGCCTACGAAGAGCCAACATGTACAAAGTAG
GCCGGGTAAACGCAGTGCCACCCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009854.1\|WP_038415762.1\|1542139_1543108_-\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
NZ_CP009854.1\|WP_038415763.1\|1543118_1544771_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP009854.1\|WP_022647599.1\|1534618_1536445_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|381595
NZ_CP009854.1\|WP_038415756.1\|1528554_1529688_+\|general-secretion-pathway-protein-GspL	unknown	unknown	gnl\|CDD\|273768
NZ_CP009854.1\|WP_023305795.1\|1550862_1552803_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP009854.1\|WP_022647600.1\|1536589_1537603_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP009854.1\|WP_032624552.1\|1539142_1540144_-\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NZ_CP009854.1\|WP_038415758.1\|1530166_1530964_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP009854.1\|WP_038415757.1\|1529684_1530170_+\|type-II-secretion-system-protein-M	unknown	unknown	gnl\|CDD\|377391
NZ_CP009854.1\|WP_038415768.1\|1548634_1549591_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
NZ_CP009854.1\|WP_038415760.1\|1534043_1534484_+\|type-III-secretion-system-invasion-protein-IagB	unknown	unknown	gnl\|CDD\|185228
NZ_CP009854.1\|WP_038415765.1\|1544915_1545815_-\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP009854.1\|WP_038415759.1\|1531217_1533941_+\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|214753
NZ_CP009854.1\|WP_022647603.1\|1540182_1541901_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP009854.1\|WP_038415767.1\|1546979_1548638_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP009854.1\|WP_038417009.1\|1545992_1546688_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP009854.1\|WP_006174393.1\|1553362_1553683_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP009854.1\|WP_006174390.1\|1552873_1553095_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP009854.1\|WP_038415761.1\|1537695_1539132_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
NZ_CP009854.1\|WP_022647609.1\|1549750_1550866_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211

Protein	Function_ID	Function_description	E-value
NZ_CP009854.1\|WP_038415762.1\|1542139_1543108_-\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
NZ_CP009854.1\|WP_038415763.1\|1543118_1544771_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP009854.1\|WP_022647599.1\|1534618_1536445_+\|PKD-domain-containing-protein	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	4.22012e-72
NZ_CP009854.1\|WP_038415756.1\|1528554_1529688_+\|general-secretion-pathway-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	1.83174e-39
NZ_CP009854.1\|WP_023305795.1\|1550862_1552803_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP009854.1\|WP_022647600.1\|1536589_1537603_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.04343e-52
NZ_CP009854.1\|WP_032624552.1\|1539142_1540144_-\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
NZ_CP009854.1\|WP_038415758.1\|1530166_1530964_+\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	3.34145e-42
NZ_CP009854.1\|WP_038415757.1\|1529684_1530170_+\|type-II-secretion-system-protein-M	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	5.53384e-26
NZ_CP009854.1\|WP_038415768.1\|1548634_1549591_-\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	3.00792e-124
NZ_CP009854.1\|WP_038415760.1\|1534043_1534484_+\|type-III-secretion-system-invasion-protein-IagB	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	1.71444e-86
NZ_CP009854.1\|WP_038415765.1\|1544915_1545815_-\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.69004e-117
NZ_CP009854.1\|WP_038415759.1\|1531217_1533941_+\|glycoside-hydrolase	gnl\|CDD\|214753	smart00636, Glyco_18, Glyco_18 domain.	6.74379e-123
NZ_CP009854.1\|WP_022647603.1\|1540182_1541901_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP009854.1\|WP_038415767.1\|1546979_1548638_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP009854.1\|WP_038417009.1\|1545992_1546688_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.63287e-146
NZ_CP009854.1\|WP_006174393.1\|1553362_1553683_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
NZ_CP009854.1\|WP_006174390.1\|1552873_1553095_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	1.04122e-47
NZ_CP009854.1\|WP_038415761.1\|1537695_1539132_-\|SDR-family-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	7.50683e-140
NZ_CP009854.1\|WP_022647609.1\|1549750_1550866_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0

>NZ_CP009854.1|WP_022647603.1|1540182_1541901_-|ubiquinone-dependent-pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAILNRGVSVVVLPGDVALKAAPETATTHWYSAPQPTITPADEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAAKLKAPVVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLAALLPLLEEKTDRKFLDKALSDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVAQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>NZ_CP009854.1|WP_032624552.1|1539142_1540144_-|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMLEEMMAAPVGDDVYGDDPTVNELQRYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGTLPLDKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVEYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGSADYIRRANRWRKMTGGGMRQAGILAAAGLYALKNNVSRLKDDHDNAAWMAAQLREIGADVMRHDTNMLFVRVGNEHAAALGEFMKARGVLINASPVVRLVMHLDVNREQLTEVVKHWQAFLQR
>NZ_CP009854.1|WP_038415761.1|1537695_1539132_-|SDR-family-oxidoreductase
MPQRILVLGASGYIGQHLTTALSQQGHQVLAVARNTERLQKLHLPGVTCHNVDLNWPKALPALLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRDTLLQTPVKQVIFLSSLQAPENEQSDHLRARQLTAETLRSALIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPAAAHRVLEAAGPEVLSYQAQFEHFMRVSGRRRWLVPVPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDRELRALIPQELIPFDDAVRNTLKEEEKLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTTASLSALWDVVNQIGGKERYFFGNILWQTRGALDLLVGHRLAKGRPAAPYLNVGDTVDSWKVIIVEPEKQLALLFGMKAPGLGRLCFTLKDKGDHRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQLAEEKRESN
>NZ_CP009854.1|WP_022647600.1|1536589_1537603_-|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIQEDFRPARFACEFARSKAAGEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQPECDKLVSGRAYNITNGEPCTLRSIVQRLIDELKIDCRIRSVPYPMLDMIARSMERFGSKSAKEPALTHYGVSKLNFDFTLDISRAENELGYKPIISLDEGIVRTAAWLRDHGKLHR
>NZ_CP009854.1|WP_022647599.1|1534618_1536445_+|PKD-domain-containing-protein
MNKRTLLSVLVAGACVAPFMAQAASLQATTGEPYTMKASDLAKKEHELTNFPLMASVKETIQTLDNAQVELIEPGRAANPDNVKRVEGIVKASDWEYLFPLRAQAYTYSNFLKAVGKFPALCKTYNDGRDSDAICRKELATMFAHFAQETGGHESWRPEAEWRQALVHVREMGWSEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQLSYNYNYGPFSEAMYGDVRTLLDKPELVADTWLNLASAIFFFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGGVECGGPTEIAQSQNRIKYYKEFANYLKVPVPANEVLGCANMKQFDEGGAGALKIYWEQDWGWSADTPDGKTYSCQLVGYQTPFSAFKEGDYSKCVQKFYNVNIVNDDGSSVTPDETPVTPTPTPSEDVTPAPTPAPVPDETPVEPVAVNHAPVAQIAGPIGAVEAGAQVSLSAEGSTDADGNKLTYTWRSQDGQTVTGEDKAVVTFKAPESATAQQYEVSLTVSDGELSSTTSYLLNVKAKAATPSGEDTSYPAWSANSKYNAGDIVNNHGKLFQCKPFPYSGWCNSAPTYYEPGAGLAWAEAWTAL
>NZ_CP009854.1|WP_038415760.1|1534043_1534484_+|type-III-secretion-system-invasion-protein-IagB
MKKLILLLLIISQGALANCWDKAARYYHVDPYLLYAIANVESGMNPYAVGKKRDGTRDVGLMQINSSHFTALESRGIDEYRLMTEPCTSIMVGASILSGMIRVYGYNWEAVGAYNAGLKKENYPQRMKYAHKVWAKYQQLKLAARD
>NZ_CP009854.1|WP_038415759.1|1531217_1533941_+|glycoside-hydrolase
MKFMKPKYLALFIAAATSSAFAAAPGTPSITSGNDKFALVEVDQAAQDYNNLIKVHKEGVDVKVEWNVWSGDAPTSAKVLLDGKTVWTGAGSAAGSATFKVKKGGRYQEQVELCNDSGCTKSASKLIIVADTDGSHLLPLNTPLLENNKAFAQHTDKVVGAYFPEWGVYDRNFSADKIPVANINHLLYGFIPICGGDGINDSAKSSGALESLKRACAGRQDYTVAIHDPWAALQKPQKGVSNWDDPYKGNYGQLMAMKKAHPDLKILPSIGGWTLSDPFYQMDNKVLRDRFVASVKDFLTTWKVFDGVDIDWEFPGGGGENAKLGNPQTDKATYTALMHDLRQMLNELSAETGRTYELTTAIGAGKDKIEDVDYNTTQQYLDHIFLMSYDFYGAWSNTDLGHQTALYGASWKPDTNYTTDNAVKAMLEQGVKPGKIVVGAGMYGRGWTGVHGYTGDNPFTGTATGPIKGTWENGIVDYRQIVNQMLGKPGWEYKYDEAAEAPYVFNKSTGELVTYDNARSVMAKGKYVLNKNLGGLFAWSIESDNGDILNAMNESLLGGSSIPDLPVETNHAPVASAADQNVTGPATVTLDGSASSDQDDDALTYKWTQVSGPSVTIANSTKAKASFSVPAVTSDQNLVFRLTVTDAKGLSNAVDVQVVNKAPKANQAPVINAMEAVTVQSGEAISLHAQASDPDGDALTYSWSVPADMNATGTDSANVRITAPEVHNTSSYTLSVIVTDGKTSVQSDVQVTVEPKPADEVTPPADDVTPPVDDVTPPADDVTPPADDVTPPADDTTGSCDAPVDANASKYAAWDASKIYNNGDTVSFDHLVWKAKYWTQGNQPGFGMDAWELVSNVKMNWRSDLVYNGGDTTTYEGNVYRAKWWTRGDNPANSDVWVKEGASTDCK
>NZ_CP009854.1|WP_038415758.1|1530166_1530964_+|prepilin-peptidase
MNTFTLMREACPLGFPMMSAILGGIMGSFLGVVAERVPGMVMDEEGSGNLLFPASHCPVCQHTLAAWENIPLLSWLLLRGRCHQCGSAIPLRLFLVELFSALFFGITAWCMPDVQALFSLWLLAAFLLPLAMIDWQHQLLPDCLTQPLLWAGLVLHAIDHTLPLRDALFGAVAGYLSLWLLYWAFRLIVGREGLGYGDFKLLAALGAWCGWQALPSIELAAALSGIVGYFAVNNLNKNNLTISFGPYLAFSGIVVFISQQFAFTF
>NZ_CP009854.1|WP_038415757.1|1529684_1530170_+|type-II-secretion-system-protein-M
MKERIVQLKSRYQNYSAREKIILKICAVAIVAAAVYYTGVIPLDNIIQNSKSTLKRQKETLNWMRSEIDKNHLQVQLVKTNNPRTVVENSAHEINLSLTDVRQEGQTLSFVVNRVNVYELKSWLREINQTSGVTLQKINLTPVDHLSDVKAQVQLTWSKSA
>NZ_CP009854.1|WP_038415756.1|1528554_1529688_+|general-secretion-pathway-protein-GspL
MKQVLFVRPDSREGGKIMCCESGSERVEVLDSLEMLAEHPLATRVCLLLPASDMIFRHFTLPKKVASQAMAFSWMAEETLIGDVDNLHWTVLYKKGADVDAVAIDADRLRAALTRCHEAGLNVIQALPDAWLLPVAAGGSTLVVQDKGYWLRLSPHVAGEMEGTLLPLLMQKAGDGEVCCYGDAPADVHVDVQHAWQHPLVLIQPQWKTCRMNLLHGEFSLKAGHGQAAKSMKAAMIAAGLLSVGLLLGPRIAMTWMLVQQENRVQQEIVQVYQHHFPSMRQQTNIKYHFGQSLKKQSKGFFLQLEELEKARQSVPAMEIDLLEYDAQQNTLTLSVSAQSQPALQAFVNQTSENFDFTLQPVSTTEPYTAMIAGKHK
>NZ_CP009854.1|WP_038415762.1|1542139_1543108_-|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIQQETPDVWTLSLLCHDYYPYRAGQYALVSVRNSADTLRAYTISSTPGVSEYITLTVRRIDDGAGSRWLTRDVKRGDYIWLSDAQGEFTCDDKKEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFSVRSPEDVIFAEEWRNYPVTLVAEHNATHGFVAGRLSREMLQSVPDIADRTVMTCGPAPYMEIVEKEVKALGVARFFKEQFFTPVAAAATSGMKFTKLQPAQTFFGRVGTTLLEALESNNVPVAAACRAGVCGCCKTKVVSGEYTVTSTMTLTDAEIAEGYVLACSCHPQGDLVLA
>NZ_CP009854.1|WP_038415763.1|1543118_1544771_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAFKAREYGLVDHYVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADASARVDNPMAELQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPSDMNALLECSMEIGQMNFKVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLLGAADSLIDLVSREKLRHIFLIGGCDGARGERNYFTDFATRVPEDCLILTLACGKYRFNKLDFGNIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPDLLAILNEKFGLRSVTNVEDDMKQLLCA
>NZ_CP009854.1|WP_038415765.1|1544915_1545815_-|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLGTNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSMAGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSMLVPILMAFFSA
>NZ_CP009854.1|WP_038417009.1|1545992_1546688_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGIMGGVLYRTLLEKRD
>NZ_CP009854.1|WP_038415767.1|1546979_1548638_+|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPNGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTTLPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>NZ_CP009854.1|WP_038415768.1|1548634_1549591_-|DUF535-domain-containing-protein
MSSIVDTPYSTLSQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLGNLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQNTLDALDNHYQMMSRHLPASLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCKYQGKSTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQENGNFALPLTMPRKPMEEIASKKRSEYRRRYILLDSLHQQVSQATAR
>NZ_CP009854.1|WP_022647609.1|1549750_1550866_+|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLSRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSESLPGAAQ
>NZ_CP009854.1|WP_023305795.1|1550862_1552803_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAAKEALPAATGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTNVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYTTISGRIMGQSWLNSITVRVKEGYDSGLAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP009854.1|WP_006174390.1|1552873_1553095_-|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAEAVA
>NZ_CP009854.1|WP_006174393.1|1553362_1553683_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP009854_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009854_2

3213397-3213505

Orphan

Consensus_repeat	Method
TGATGCCCTCACCCCGGCCCTCTCCCACGGGGAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009854_2

>merge|NZ_CP009854|2|3213397-3213505|CRISPRCasFinder
TGATGCCCTCACCCCGGCCCTCTCCCACGGGGAGAGGGGGAACACCCGGTCGATTGGGCTGCACTGCTGTCTGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGG

>NZ_CP009854|2|2|3213397-3213505|CRISPRCasFinder
TGATGCCCTCACCCCGGCCCTCTCCCACGGGGAGAGGG	GGAACACCCGGTCGATTGGGCTGCACTGCTGTC
TGATGCCCTCACCCCGGCCCTCTCCCACAGGGAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009854.1\|WP_022648839.1\|3207146_3207590_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP009854.1\|WP_003861424.1\|3214301_3215015_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|185029
NZ_CP009854.1\|WP_023300631.1\|3207826_3208846_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380489
NZ_CP009854.1\|WP_038416453.1\|3210079_3210724_-\|glutathione-transferase	unknown	unknown	gnl\|CDD\|185068
NZ_CP009854.1\|WP_003861426.1\|3213518_3214292_-\|histidine-ABC-transporter-ATP-binding-protein-HisP	unknown	unknown	gnl\|CDD\|182592
NZ_CP009854.1\|WP_038416456.1\|3211569_3211938_+\|dihydroneopterin-triphosphate-2'-epimerase	unknown	unknown	gnl\|CDD\|183053
NZ_CP009854.1\|WP_038416454.1\|3210864_3211494_+\|GSH-dependent-disulfide-bond-oxidoreductase	unknown	unknown	gnl\|CDD\|172475
NZ_CP009854.1\|WP_000262116.1\|3220076_3220565_-\|colicin-V-production-protein	unknown	unknown	gnl\|CDD\|182773
NZ_CP009854.1\|WP_038416460.1\|3216793_3217576_-\|lysine/arginine/ornithine-ABC-transporter-substrate-binding-protein-ArgT	unknown	unknown	gnl\|CDD\|184972
NZ_CP009854.1\|WP_023300632.1\|3208849_3209416_-\|NUDIX-hydrolase-YfcD	unknown	unknown	gnl\|CDD\|185291
NZ_CP009854.1\|WP_023300635.1\|3211951_3212845_+\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NZ_CP009854.1\|WP_023300639.1\|3220819_3221506_-\|cell-division-protein-DedD	unknown	unknown	gnl\|CDD\|236940
NZ_CP009854.1\|WP_017383437.1\|3205381_3206773_-\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|171824
NZ_CP009854.1\|WP_038416461.1\|3221495_3222764_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|182774
NZ_CP009854.1\|WP_008502595.1\|3218525_3220043_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
NZ_CP009854.1\|WP_015572254.1\|3217866_3218436_-\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|235677
NZ_CP009854.1\|WP_003861447.1\|3206794_3207067_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_CP009854.1\|WP_023300633.1\|3209471_3210023_-\|phosphodiesterase	unknown	unknown	gnl\|CDD\|181869
NZ_CP009854.1\|WP_006811404.1\|3215011_3215698_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|185089
NZ_CP009854.1\|WP_003861421.1\|3215786_3216569_-\|histidine-ABC-transporter-substrate-binding-protein-HisJ	unknown	unknown	gnl\|CDD\|185334

Protein	Function_ID	Function_description	E-value
NZ_CP009854.1\|WP_022648839.1\|3207146_3207590_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	1.34099e-38
NZ_CP009854.1\|WP_003861424.1\|3214301_3215015_-\|ABC-transporter-permease	gnl\|CDD\|185029	PRK15069, PRK15069, histidine ABC transporter permease HisM.	3.44404e-162
NZ_CP009854.1\|WP_023300631.1\|3207826_3208846_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.01675e-105
NZ_CP009854.1\|WP_038416453.1\|3210079_3210724_-\|glutathione-transferase	gnl\|CDD\|185068	PRK15113, PRK15113, glutathione transferase.	1.22672e-144
NZ_CP009854.1\|WP_003861426.1\|3213518_3214292_-\|histidine-ABC-transporter-ATP-binding-protein-HisP	gnl\|CDD\|182592	PRK10619, PRK10619, histidine ABC transporter ATP-binding protein HisP.	0
NZ_CP009854.1\|WP_038416456.1\|3211569_3211938_+\|dihydroneopterin-triphosphate-2'-epimerase	gnl\|CDD\|183053	PRK11245, folX, dihydroneopterin triphosphate 2'-epimerase.	7.22606e-80
NZ_CP009854.1\|WP_038416454.1\|3210864_3211494_+\|GSH-dependent-disulfide-bond-oxidoreductase	gnl\|CDD\|172475	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional.	9.79872e-118
NZ_CP009854.1\|WP_000262116.1\|3220076_3220565_-\|colicin-V-production-protein	gnl\|CDD\|182773	PRK10845, PRK10845, colicin V production protein; Provisional.	4.56596e-105
NZ_CP009854.1\|WP_038416460.1\|3216793_3217576_-\|lysine/arginine/ornithine-ABC-transporter-substrate-binding-protein-ArgT	gnl\|CDD\|184972	PRK15010, PRK15010, lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT.	7.30467e-174
NZ_CP009854.1\|WP_023300632.1\|3208849_3209416_-\|NUDIX-hydrolase-YfcD	gnl\|CDD\|185291	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional.	4.19565e-130
NZ_CP009854.1\|WP_023300635.1\|3211951_3212845_+\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	2.53159e-171
NZ_CP009854.1\|WP_023300639.1\|3220819_3221506_-\|cell-division-protein-DedD	gnl\|CDD\|236940	PRK11633, PRK11633, cell division protein DedD; Provisional.	1.61758e-123
NZ_CP009854.1\|WP_017383437.1\|3205381_3206773_-\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|171824	PRK12996, ulaA, PTS ascorbate transporter subunit IIC.	0
NZ_CP009854.1\|WP_038416461.1\|3221495_3222764_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	gnl\|CDD\|182774	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional.	0
NZ_CP009854.1\|WP_008502595.1\|3218525_3220043_-\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
NZ_CP009854.1\|WP_015572254.1\|3217866_3218436_-\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|235677	PRK06029, PRK06029, UbiX family flavin prenyltransferase.	6.62312e-127
NZ_CP009854.1\|WP_003861447.1\|3206794_3207067_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	4.34821e-35
NZ_CP009854.1\|WP_023300633.1\|3209471_3210023_-\|phosphodiesterase	gnl\|CDD\|181869	PRK09453, PRK09453, phosphodiesterase; Provisional.	1.42984e-121
NZ_CP009854.1\|WP_006811404.1\|3215011_3215698_-\|ABC-transporter-permease-subunit	gnl\|CDD\|185089	PRK15135, PRK15135, histidine ABC transporter permease HisQ.	5.44036e-153
NZ_CP009854.1\|WP_003861421.1\|3215786_3216569_-\|histidine-ABC-transporter-substrate-binding-protein-HisJ	gnl\|CDD\|185334	PRK15437, PRK15437, histidine ABC transporter substrate-binding protein HisJ; Provisional.	0

>NZ_CP009854.1|WP_023300635.1|3211951_3212845_+|TIGR01777-family-protein
MKILLTGGTGLIGRHLIPRLQALHHDITVVTRSPEKARQVLGTGVEIWKGLAERQDLNGFDAVINLAGEPIADKRWTEEQKQRLCSSRWNMTERLVELIRNSEMPPSVLISGSATGYYGDLGEVVVTEEEPPHNEFTHKLCAQWERIACGAQSDNTRVCLLRTGVVLAPKGGILGKMLPPFKMGLGGPIGNGRQYLAWIHIDDMVNGILWLLDNDLRGPFNMVSPYPVRNEQFAHALGHALHRPAVLRVPATAIRLLMGESSVLVLGGQRALPKRLEAAGFTFRWYDLEEALGDVVQ
>NZ_CP009854.1|WP_038416456.1|3211569_3211938_+|dihydroneopterin-triphosphate-2'-epimerase
MSQLDAIIRIKNLRLRTFIGIKEEEIANRQDIVVNVVIHYPADKARASEDINDALNYRTITKSIIQYVENNRFALLEKLTQDVLDIAREHHWVTYAEVEIDKLHALRYADSVSMTLSWQRQA
>NZ_CP009854.1|WP_038416454.1|3210864_3211494_+|GSH-dependent-disulfide-bond-oxidoreductase
MIDLYYAPTPNGHKITLFLEEAELDYRIIRVDISKGDQFRPVFLAISPNNKIPAIIDNLPSDGGKPLSLFESGEILLYLAEKTGKLLSGELRERHHTLQWLFWQSSGLGPMLGQNHHFTAYAPQTIPYAIERYQVETQRLYGVLNRRLEKSPWLGGEHYSIADIACWPWINTHERHRIDLATYPAVNNWFERIRTRPATERAMQKIHQT
>NZ_CP009854.1|WP_038416453.1|3210079_3210724_-|glutathione-transferase
MSQPVITLWSDANFFSPYVMSVYVALAEKGLTFSLKTVDLDSGEHLQPQWQGYALTRRVPVLEIDGFELSESSAIDEYLEDRFAPPEWERIYPHDLQKRARARQIQAWLRSDLVPIRTERSTDVVFAGVKKPALSEEGLSSARKLIDTASSLLSQGNPNLFGEWCIADTDLALMLNRLILNGDDVPQLLVDYATFQWQRASVQRYLALSAKRAG
>NZ_CP009854.1|WP_023300633.1|3209471_3210023_-|phosphodiesterase
MKLMFASDIHGSLPATERVLSLFAQSGAQWLVILGDVLNHGPRNALPEGYAPAQVAEKLNHFASRIIAVRGNCDSEVDQMLLQFPITAPWQQVLMENSRLFLTHGHLFGPDNLPSLAAGDVLVYGHTHIPVAEKRGAFYHFNPGSVSIPKGGNPASYGMYEDGTLSVIALNDQQVIAQIAINP
>NZ_CP009854.1|WP_023300632.1|3208849_3209416_-|NUDIX-hydrolase-YfcD
MVEQNHLASTEWVDIVSEENEVIAQASREQMRAERLRHRATYIVVHDGMGKILVQRRTDTKDFLPGMLDATAGGVVQADEVLLDSARREAEEELGIAGVPFAEHGQFYFEDEHCRVWGGLFSCVSHGPFALQEEEVSEVCWMTPEEITARCDEFTPDSLKALALWMTRNAKNESAKPENKPEKEEEAE
>NZ_CP009854.1|WP_023300631.1|3207826_3208846_+|LacI-family-DNA-binding-transcriptional-regulator
MSLTRKRRSTGKVTLADVAQLAGVGTMTVSRALRTPEQVSDKLREKIEAAVQELGYMPNLAASALASASSWTIAMVVPNLSEAGCSEMFAGLQQVLQPAGYQIMLAESQHRLEQEEKLLETLLASNIAAAILLSVEHSDTVRHWLKNASIPVMEMGAMRADPIDMNIGIDNVAAMYELTEMVIQRGYQNIGLLCANQEQWIFQQHLQGWYKAMLRHHLSPNRVINAAMPPSFSTGAAQLPEFLLAWPELDALVCVSDELACGALYECQRRRIKVPDDLAVVGFGDSDVSRVCQPPLTTMAVPHRKIGIEAGKALLERLNDGDWRDHKPIASSLCLRESC
>NZ_CP009854.1|WP_022648839.1|3207146_3207590_-|PTS-sugar-transporter-subunit-IIA
MLKKWIYDTTIILQDSVESWPQALELCAKPLLDLQVIAPEYVTAIIEQHHRLGPYYVLAPGLAMPHARPEEGAKGLGLSLLKLKQGVSFGAGEFDPVDVIVMLAAPDKHSHIEMISALAELFSSDEDMAELHRANTLEEIKTVINRF
>NZ_CP009854.1|WP_003861447.1|3206794_3207067_-|PTS-sugar-transporter-subunit-IIB
MKIMAICGSGLGSSFMVEMNIKKVLKKLEIEAEVEHSDLSSATPGAADLFVMAKDIAASASVPESQLVVINNIIDINELEAQLRAWFERQ
>NZ_CP009854.1|WP_017383437.1|3205381_3206773_-|PTS-ascorbate-transporter-subunit-IIC
MFILETLNFVVDILKVPSVLVGLIALIGLVAQKKAFSDVVKGTIKTILGFIVLGGGATVLVGSLNPLGGMFEHAFNIQGIIPNNEAIVSIALEKYGASTALIMAFGMVANIIVARFTRLKYIFLTGHHTFYMACMIGVILTVAGFEGVGLVFTGSLILGLIMAFFPAIAQRYMKRITGNDEIAFGHFGTLGYVLSGWIGSKVGKGSRSTEEMNLPKNLSFLRDSSISISLTMMIIYLIMAVSAGREYVEATFSGGQNYLVYAIIMAITFAAGVFIILQGVRLILAEIVPAFTGFSEKLVPNARPALDCPVVYPYAPNAVLIGFLFSFLGGIVGLFICGQFSWVLILPGVVPHFFTGATAGVFGNATGGRRGAMIGAFANGLLITFLPVLLLPVLGAIGFANTTFSDADFGAVGIVLGNLARFLSPLAITGLVVVLFALLVAYNVFAKNKPASGNAQENPGAKS
>NZ_CP009854.1|WP_003861426.1|3213518_3214292_-|histidine-ABC-transporter-ATP-binding-protein-HisP
MAENKLNVIDLHKRYGEHEVLKGVSLEANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVSGQNINMVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPVQVLGLSKQEARERAVKYLAKVGIDERQQIKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQKLAEEGKTMVVVTHEMGFARNVSNHVIFLHQGKIEEQGHPDEVLANPQSPRLQQFLKGSLK
>NZ_CP009854.1|WP_003861424.1|3214301_3215015_-|ABC-transporter-permease
MIEIIQEYWKSLLWTDGYRFTGVAITLWLLISSVVMGGILAVFLAIGRVSNNKFIQFPIWLFTYVFRGTPLYVQLLVFYSGMYTLEIVKGTEMLNAFFRSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSVKLYRCIILPSALRIALPAYSNEVILMLHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLIISYVLISLFRKAEKRWLQHIKPSTH
>NZ_CP009854.1|WP_006811404.1|3215011_3215698_-|ABC-transporter-permease-subunit
MLYGFSGVILQGALVTLELAISSVVLAVLIGLAGAGAKLSANRPLALIFEGYTTLIRGVPDLVLMLLIFYGLQIALNGVTDAIGMDQIDIDPMVAGIITLGFIYGAYFTETFRGAYMAVPKGHIEAATAYGFTSSQTFRRIMFPAMMRYALPGIGNNWQVILKATALVSLLGLEDVVKATQLAGKSTWEPFYFAVVCGVIYLVFTTVSNGVLLLLERRYSVGVKRADL
>NZ_CP009854.1|WP_003861421.1|3215786_3216569_-|histidine-ABC-transporter-substrate-binding-protein-HisJ
MKKLVLSLSLVLAFSSATAAFAAIPQKIRIGTDPTYAPFESKNAKGELVGFDIDLANELCKRIKAQCTYVENPLDALIPSLKAKKIDVIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKSSDIQPTLESLKGKRVGVLQGTTQETYGNEHWAPKGIEIVSYQGQENIYADLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSIKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYDKLAKKYFDFNVYGG
>NZ_CP009854.1|WP_038416460.1|3216793_3217576_-|lysine/arginine/ornithine-ABC-transporter-substrate-binding-protein-ArgT
MKKTVLALSLLVGLSAAASSYAALPQTVRIGTDATYAPFSSKDAKGDFVGFDIDLGNEMCKRMEVKCTWVGSDFDALIPSLKAKKIDAIISSLSITEKRQQEIAFSEKLYAADSRLIAAKGSPIQPTVDSLKGKHVGVLQGSTQEGYANANWREKGVDVVAYQNQDLIYSDLAAGRLDAAFQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGIGLRKDDTELKAAFDKAFNELRKDGTYDKLAKKYFDFNVYGD
>NZ_CP009854.1|WP_015572254.1|3217866_3218436_-|UbiX-family-flavin-prenyltransferase
MKRLIVGISGASGAIYGVRLLQVLRDVAGVETHLVMSQAARQTLSLETDLSLRDVQALADVVHDARDIAASISSGSFKTAGMVILPCSIKTLSGIVNSYTDTLVTRAADVVLKERRPLVLCVRETPLHLGHLRLMTQAAELGAVIMPPVPAFYHRPQTLDDVINQTVNRVLDQFDIDLPEDLFTRWQGA
>NZ_CP009854.1|WP_008502595.1|3218525_3220043_-|amidophosphoribosyltransferase
MCGIVGIAGFMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVNDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAVAATNRQIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDLGDGRSEYMVASESVALDTLGFEFLRDVAPGEAVYITEKGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSARVNMGTKLGEKIAREWDDLDIDVVIPIPETSCDIALEIARILDKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEIRFPNVYGIDMPTANELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVRAENPDIQQFECSVFNGIYVTKDVDQQYLDYLDSLRNDDAKAVQLQNDLESLEMHNEG
>NZ_CP009854.1|WP_000262116.1|3220076_3220565_-|colicin-V-production-protein
MVWIDYAIIAVIGFSCLVSLIRGFVREALSLVTWGCAFFVASHYYTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNYVIGQLVEKTGLSGTDRVLGICFGALRGVLIVAAILFFLDTFTGFSKSEDWQKSQLIPEFSFIIRWFFDYLQSSSSFLPRA
>NZ_CP009854.1|WP_023300639.1|3220819_3221506_-|cell-division-protein-DedD
MASKFQNRLTGTIVLVALGVIILPGLLDGQKKHYQDEFAAIPLVPKPGDRDEPDMLPAATQALPAQPPEGAAEEVRAGDAAAPSLDPSRLATNNNIEIDPVPVEQPKPVEKPKPVEKPQPKPQRDKAAEQLAAASETPPPAKQDAAPTGKAYVVQLGALKNADKVNEIVSKLRGAGYRVYTSPTTPVQGKITRILVGPDASKDKLKGSLGELKQISGLSGVVMNYSAN
>NZ_CP009854.1|WP_038416461.1|3221495_3222764_-|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase
MENKSIPQATSPLAAWLSYLENLHSKTIDMGLERVSQVAARLDVLKPAPFVFTVAGTNGKGTTCRTLESVLMAAGYKVGVYSSPHLVRYTERVRVQNTELAESAHTASFAAIEAARGDTSLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNMVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRANKPAVVGEPDMPHTIADVAKEKGARLLRRGVDWQYEVQDNGWRFSDAQGVLENLPLPQVPQPNAATALAALRASGLAVSEQAIRDGIQNALLPGRFQIVSESPRLILDVAHNPHAAAYLAGRLKSLPKTGRVLAVIGMLHDKDIGGTLACMESVVDSWYCAPLEGPRGATAEQLMEHLGKGEIYSSVVSAWRAAMAEAKPEDTVLVCGSFHTVAHVMEVMDAGRTGGE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP009854_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009854_3

4146733-4146818

Orphan

Consensus_repeat	Method
CAGCCCCTCTCCCACAGGGAGAGGGTAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009854_3

>merge|NZ_CP009854|3|4146733-4146818|CRISPRCasFinder
CAGCCCCTCTCCCACAGGGAGAGGGTAGCGTTTGTTAAGGCCTGGTGCCCTTACCCACAGCCCCTCTCCCACGGGGAGAGGGTAGC

>NZ_CP009854|3|3|4146733-4146818|CRISPRCasFinder
CAGCCCCTCTCCCACAGGGAGAGGGTAGC	GTTTGTTAAGGCCTGGTGCCCTTACCCA
CAGCCCCTCTCCCACGGGGAGAGGGTAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009854.1\|WP_003860428.1\|4152618_4153089_+\|transcriptional-regulator-ArgR	unknown	unknown	gnl\|CDD\|179922
NZ_CP009854.1\|WP_022649556.1\|4151282_4152221_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235340
NZ_CP009854.1\|WP_032622090.1\|4144188_4144686_-\|ClpXP-protease-specificity-enhancing-factor	unknown	unknown	gnl\|CDD\|225517
NZ_CP009854.1\|WP_022649554.1\|4148134_4148533_+\|DUF1043-family-protein	unknown	unknown	gnl\|CDD\|236953
NZ_CP009854.1\|WP_038416804.1\|4146820_4147945_-\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NZ_CP009854.1\|WP_003860434.1\|4146045_4146474_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP009854.1\|WP_017382714.1\|4154108_4155563_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP009854.1\|WP_022649551.1\|4143179_4143920_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185202
NZ_CP009854.1\|WP_038416806.1\|4155649_4157617_-\|p-hydroxybenzoic-acid-efflux-pump-subunit-AaeB	unknown	unknown	gnl\|CDD\|182600
NZ_CP009854.1\|WP_038416802.1\|4138625_4139156_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185201
NZ_CP009854.1\|WP_022649557.1\|4153790_4154063_-\|ribonuclease-inhibitor	unknown	unknown	gnl\|CDD\|225346
NZ_CP009854.1\|WP_003860438.1\|4144691_4145330_-\|stringent-starvation-protein-A	unknown	unknown	gnl\|CDD\|236537
NZ_CP009854.1\|WP_003860430.1\|4150163_4151231_+\|outer-membrane-stress-sensor-serine-endopeptidase-DegS	unknown	unknown	gnl\|CDD\|182820
NZ_CP009854.1\|WP_038416805.1\|4153467_4153731_+\|peroxide/acid-stress-response-protein-YhcN	unknown	unknown	gnl\|CDD\|369322
NZ_CP009854.1\|WP_139153863.1\|4145483_4145714_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009854.1\|WP_080298789.1\|4142383_4143139_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185202
NZ_CP009854.1\|WP_038416803.1\|4139152_4141540_-\|fimbrial-biogenesis-usher-protein	unknown	unknown	gnl\|CDD\|237937
NZ_CP009854.1\|WP_003860436.1\|4145637_4146030_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP009854.1\|WP_022649549.1\|4141564_4142236_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236632
NZ_CP009854.1\|WP_022649555.1\|4148703_4150071_+\|serine-endoprotease-DegQ	unknown	unknown	gnl\|CDD\|182262

Protein	Function_ID	Function_description	E-value
NZ_CP009854.1\|WP_003860428.1\|4152618_4153089_+\|transcriptional-regulator-ArgR	gnl\|CDD\|179922	PRK05066, PRK05066, transcriptional regulator ArgR.	2.58591e-114
NZ_CP009854.1\|WP_022649556.1\|4151282_4152221_-\|malate-dehydrogenase	gnl\|CDD\|235340	PRK05086, PRK05086, malate dehydrogenase; Provisional.	0
NZ_CP009854.1\|WP_032622090.1\|4144188_4144686_-\|ClpXP-protease-specificity-enhancing-factor	gnl\|CDD\|225517	COG2969, SspB, Stringent starvation protein B [General function prediction only].	2.70721e-84
NZ_CP009854.1\|WP_003860438.1\|4144691_4145330_-\|stringent-starvation-protein-A	gnl\|CDD\|236537	PRK09481, sspA, stringent starvation protein A; Provisional.	7.17807e-157
NZ_CP009854.1\|WP_038416804.1\|4146820_4147945_-\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	0
NZ_CP009854.1\|WP_003860434.1\|4146045_4146474_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	3.93949e-106
NZ_CP009854.1\|WP_022649551.1\|4143179_4143920_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185202	PRK15302, PRK15302, hypothetical protein; Provisional.	8.35447e-35
NZ_CP009854.1\|WP_038416806.1\|4155649_4157617_-\|p-hydroxybenzoic-acid-efflux-pump-subunit-AaeB	gnl\|CDD\|182600	PRK10631, PRK10631, p-hydroxybenzoic acid efflux subunit AaeB; Provisional.	0
NZ_CP009854.1\|WP_038416802.1\|4138625_4139156_-\|hypothetical-protein	gnl\|CDD\|185201	PRK15301, PRK15301, hypothetical protein; Provisional.	9.28193e-21
NZ_CP009854.1\|WP_022649557.1\|4153790_4154063_-\|ribonuclease-inhibitor	gnl\|CDD\|225346	COG2732, COG2732, Barstar, RNAse (barnase) inhibitor [Transcription].	2.55307e-27
NZ_CP009854.1\|WP_022649554.1\|4148134_4148533_+\|DUF1043-family-protein	gnl\|CDD\|236953	PRK11677, PRK11677, DUF1043 family protein.	2.13867e-86
NZ_CP009854.1\|WP_003860430.1\|4150163_4151231_+\|outer-membrane-stress-sensor-serine-endopeptidase-DegS	gnl\|CDD\|182820	PRK10898, PRK10898, serine endoprotease DegS.	0
NZ_CP009854.1\|WP_017382714.1\|4154108_4155563_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NZ_CP009854.1\|WP_038416805.1\|4153467_4153731_+\|peroxide/acid-stress-response-protein-YhcN	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	1.41906e-16
NZ_CP009854.1\|WP_080298789.1\|4142383_4143139_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185202	PRK15302, PRK15302, hypothetical protein; Provisional.	3.86375e-32
NZ_CP009854.1\|WP_038416803.1\|4139152_4141540_-\|fimbrial-biogenesis-usher-protein	gnl\|CDD\|237937	PRK15304, PRK15304, putative fimbrial outer membrane usher protein; Provisional.	0
NZ_CP009854.1\|WP_003860436.1\|4145637_4146030_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.49838e-83
NZ_CP009854.1\|WP_022649549.1\|4141564_4142236_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236632	PRK09918, PRK09918, putative fimbrial chaperone protein; Provisional.	1.12499e-99
NZ_CP009854.1\|WP_022649555.1\|4148703_4150071_+\|serine-endoprotease-DegQ	gnl\|CDD\|182262	PRK10139, PRK10139, serine endoprotease DegQ.	0

>NZ_CP009854.1|WP_003860434.1|4146045_4146474_-|50S-ribosomal-protein-L13
MKTFTAKPETVQRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKMYYHHTGHIGGIKEATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI
>NZ_CP009854.1|WP_003860436.1|4145637_4146030_-|30S-ribosomal-protein-S9
MAENQYYGTGRRKSSAARVFIKPGSGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR
>NZ_CP009854.1|WP_139153863.1|4145483_4145714_-|hypothetical-protein
MTLVRLNVRKWVCVKHVVVHSSPNVNLFCLRRTIGEKPASAGFFMDNAQVIHSNISYIFSFSTFPASPHHKAIKIW
>NZ_CP009854.1|WP_003860438.1|4144691_4145330_-|stringent-starvation-protein-A
MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPSQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLYMQRIEKDWYSLMNVIVNGSSSEADAARKQLREELLAIAPVFGQKPFFLSDEFSLVDCYLAPLLWRLPTLGVEFSGPGAKELKGYMTRVFERDSFLASLTEPEREMRLGRG
>NZ_CP009854.1|WP_032622090.1|4144188_4144686_-|ClpXP-protease-specificity-enhancing-factor
MEMSQLSPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGVPRQVSVPLAAVLAIYARENGAGTMFEPEAAYDEEVASLNDDGTSDERESDTVMSVIDGDKPDHHDDNDPDDDPPPRGGRPALRVVK
>NZ_CP009854.1|WP_022649551.1|4143179_4143920_-|DUF1120-domain-containing-protein
MNITFKKLFSSAAICAALAMSNAHAANDVTLKVIGNIVPGSCVPSLPNGGVVDYGTMPASTINPTGTANTLVQLGAKSITLTITCDSDTSVGVTSTDNRHDTRVGLGSAAYIENGFFDNVNANASGNAYGLGKTSAGVNIGSYVIAADPVNTTTDGVVADLIAATGTDTSNYTWVKSSTGAFAPVNSGTGQTRVFTAAASGTTTPKAFKVMNMPLRITTALQDNTVLGTGDTITLDGNATLSLVYL
>NZ_CP009854.1|WP_080298789.1|4142383_4143139_-|DUF1120-domain-containing-protein
MKIMEFKKVLSAATVAVAFGLSAFAAQAANDVTLKVVGTINPAACTPTLPDGGVVDYGTVLNQNIAPTGATNKLVQLGQKSITLNISCESNMSVAFTSTDNRLDSRVNLSSTAFIAGSGTDKSDFSNTAGAFGLGKTTAGVSIGAYTVAINTEAVTADGANVDTLVTGSITEGQRSWEKVAPGLGYLCSLNGCTGYQKANTVATAGTTQPKAFKQLSVPLLVTSAVQDNSVLGTTDVITLDGNATISLVYL
>NZ_CP009854.1|WP_022649549.1|4141564_4142236_-|fimbria/pilus-periplasmic-chaperone
MKKILYLALLAVATKCCATGMVPETSVLLVDAQKGEASMNVKNTDSQPALLYTNIVDLPDSDKSIRLIVSQPVVRVDAGETQRMRFLLQTSKPMKYEELKRVTFEGIPPKEKGEDKVALTIRQDLPVVIHPAGLPEETQPWKFLTWNKKGDGLVINNPSDYVVRITASFKTLPSGKAGVLDKTYILPHTSIKTTLPNFSDNKVEFYPASRYGYKGDRFTTDLK
>NZ_CP009854.1|WP_038416803.1|4139152_4141540_-|fimbrial-biogenesis-usher-protein
MQQKTLLACLIGLVCSGQAMAQQMETAAINFDQETLRSLGINPDVSNYFSRKTKYLPGSVSVALKVNGDNKGNVIARFDNNGDLCFDKPFMEQAGLKVPSDYESGCYDYTGHIPSAIVEASPAQESLSLVVPADRIANSESDIGAYTSGGTAALLNYSLLSSRNEFGDGHSDYSQAMLDGGVNFDDWILRTQQLLSRSDGEFESNNSSTYLQHTFVPLKSTLRAGEVNINNSLLQGTGIYGIELSPESALQQGGSGVSVSGIANTPQARIEVRQQNVLVYSTLVPVGPFNLTDVPVRNGVSDLNVTVVETDGSQHSYVVPAALYNQSAGAPSGYHFALGRVSDSYSETPWVASLSGGWKLSERVNVNAGSIVGEDYQAVATSLDTVPLPAWLVSLQANQSNDSKDSLKGQRYTLSATWSSDPAFGMGANASVTHKSQDYRELFEALDDDFDSGNKNEYSAGLTWSVPYLGTLSTSYYQTQGYDKSDDSRFISAGWNKSFKYATISMNWQHQLSADEENEDDGDLFYVNFSIPFGASNSVSLYSRHDDHKTRYGASALGVVSDTTSWSLGAEHDQATNRDNVNGGISSNLHYTQLGLSASSDNENSRSYSGSLQGGIAVHGQGVTFSPWAIRDTFAIAALDKPVSGVRIDTPQGPVWTDFRGQAVVPSVGAWRPARVEVDTETLPKNMDIGNGTRVVTLGKGAVGHLDFTALTQRRALVNVTLANGKKLPKGIALEDSHGNYLTTSVDDGVVFFNDVEPAQQVVAKLDNGTCAFGLKLPKEANTDTFYETVNEVCK
>NZ_CP009854.1|WP_038416802.1|4138625_4139156_-|hypothetical-protein
MKALFLAVCAMAFSLHAMADCQLVSSQQKLSYGRMSAAERQAEGNTLIEMPEKQIVLNVICDEPSRIRLFLGSNVPKGHEFGFGDNGVMRITAAQATVDDRTVNLAAIHAGDPWVTNGGVREIAPALNEGIAFINGQELRGKTASVTLTIKPRFKSNHITDREVWRGNLRVRMDVQ
>NZ_CP009854.1|WP_038416804.1|4146820_4147945_-|cell-division-protein-ZapE
MQNLSPSSRYQLALSEGTHQPDDVQREAVNRLDTIYQELLAKPADAVQSSGLKAAFGRLLGKKEPTVNAPVRGLYMWGGVGRGKTWLMDMFYQSLPGTRKQRLHFHRFMLRVHEELTALQGETDPLEIVADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVTTSNIPPDELYRNGLQRARFLPAIDAIKQYCDIMNVDAGVDYRLRTLTQAHLWLSPLNADTSREMDKLWLALAGAPRDNAPALEINHRPLPTLGVENQTLAVSFATLCVDARSQHDYIALSRLFHTVMLWDVPVMTPLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGERLKFEFQRCLSRLQEMQSEEYLKREHMP
>NZ_CP009854.1|WP_022649554.1|4148134_4148533_+|DUF1043-family-protein
MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQSLQYELEKNKAELEEYREELVSHFARSAELLDNMATDYRQLYQHMAKSSSSLLPEMTAESNPFRNRLADSEAGNDQAPVQMPRDYSDGASGLLRGGVKRD
>NZ_CP009854.1|WP_022649555.1|4148703_4150071_+|serine-endoprotease-DegQ
MKKKNQLLSALALSVGLSLSASFPASAALPSQVPGQEAIPSLAPMLEKVLPAVVSVQVEGTARQSQRIPEELKKYFGEEAPDQQAQPFEGLGSGVIIDAAKGYILTNNHVISQADKISVQLNDGREFDAKLIGGDDQSDIALLQVQNPSNLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSIGIGFAIPSNMAKTLSQQLIQFGEVKRGLLGIKGMEMSADIAKAFKLNVQRGAFVSEVLPNSGSAKAGVKSGDVIVSLNDKPLSSFAELRSRIATTEPGAKVKLGLIREGKPLTVEVTLDKSTSSSASAEQISPALQGATLSDGQLKDGTKGISVTAVEKSSPAAQAGLHQDDVIVGVNRTRVQSIAEMRKVLESKPAVIALQIIRGNDTLYILLR
>NZ_CP009854.1|WP_003860430.1|4150163_4151231_+|outer-membrane-stress-sensor-serine-endopeptidase-DegS
MLLKLFRSIVIGLIVAGLLLVAMPSLRQFNKLSAPQFDSTDETPATYNQAVRRAAPAVVNVYNRGLNSSAHNQLEIRTLGSGVIMDDRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINRKRTPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPSGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPMHTQGGGIDQIQGIVVNEVAPGGPAANAGIQVNDVILSVNGTPAVSALETMDQVAEIRPGSIIPVEVMRNDKKLTIQVTIQEYPATN
>NZ_CP009854.1|WP_022649556.1|4151282_4152221_-|malate-dehydrogenase
MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDARPALQNADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAETCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPTEVEVPVIGGHSGVTILPLLSQIPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKNVVECAYVEGDGEHARFFSQPLLLGKNGVEERKSIGTLSAFEQNAMEGMLDTLKKDITLGEEFVNK
>NZ_CP009854.1|WP_003860428.1|4152618_4153089_+|transcriptional-regulator-ArgR
MRSSSKQEELVKAFKALLKEEKFSSQGEIVQALQEQGFDNINQSKVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSPGAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFSVKDLYEAILVLFEQEL
>NZ_CP009854.1|WP_038416805.1|4153467_4153731_+|peroxide/acid-stress-response-protein-YhcN
MKIRTTVAALSVLSALSFGAFAADTINAEQAQSRQAIGTVSVGAIGTSPMDMHEMLNKKAEEQGASSYRIIEARSGDHWHATAELYK
>NZ_CP009854.1|WP_022649557.1|4153790_4154063_-|ribonuclease-inhibitor
MKIYTFDFDEIDSQEDFYREFIRAFDLERGSVNNLDMLWDVVTGDRLPLPLEIEFTHLPEKLRRRFGALILLFDEAEEELEGQLRFNVRQ
>NZ_CP009854.1|WP_017382714.1|4154108_4155563_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MTTQALQDSILFQTGYLVNGIWKTLDTTFDVLNPATGEVVAKVAKAGKAETEEAIAAATKAFPAWRAKTAKERSTILYRWYELIIENKSWLGRLMTTEQGKPLKEAEGEVDYAASFIQWFAEQAKRANGEIIPPVKPGSRILATREPVGVVAAITPWNFPMAMLTRKLGPALAAGCTGVIKPANNTPLSAFALLTLAKQAGVPDGVLNAVAGSTSEISDAIMASHDVRKISFTGSTAVGKTLVRNSAETMKKVSMELGGNAPYIVFEDADIEAAVKGAIANKFRNAGQVCVSVNRFYIQETVYDKFVNQLADAVKALKVGNGLDEGVVVGPLIEPSAVEKVREHVEDAVAKGATVLAGGKPHELGGNFWMPTVLGDCHEGMKLAEEETFGPVAACFRFTSEDEVVMRANNTPYGLAAYFYTQNLSRVFRVSQAIESGMIGINECAVSTELGPFGGVKESGLGREGSVLGLEEFLEVKTLHIGGL
>NZ_CP009854.1|WP_038416806.1|4155649_4157617_-|p-hydroxybenzoic-acid-efflux-pump-subunit-AaeB
MGIFSIASQHIRFAVKLACAIVLALFVGFHFQLETPRWAVLTAAIVAAGPAFAAGGEPYSGAIRYRGMLRIIGTFIGCIAALTIIILMIRTPLLMLIVCCIWAGFCTWVSSLVKVENSYAWGLAGYTALIIIITIQSEPLLAPQFAVERCSEIVIGIVCAIVADLLFSPRSIKQEVDRELDALIVAQYQLMQLCIKHGDSEEVDKAWSALVRRTQALEGMRSNLNMESSRWERANRRLKAINTVSLTLITQACETYLIQNTRPEVVTDTFRELFDEPVETVQDVHRQLKRMRRVIAWTGERDTPVTIYTWVGAATRYLLLKRGVISNTKISAAEEEVLQGEVVIKPESAERHHAMVNFWRTTLACILGTLFWLWTGWTSGSGAMVMIAVVTALAMRLPNPRMVAIDFLYGTIAALPIGALYFLVIIPSTQQSMLLLCISLAVMAFFIGIEVQKRRLGSLGALASTINILVLDNPMTFHFSQFLDSALGQLVGCFLAMMVILLVRDNSQARTGRVLLNQFVSAAVSSLTTNTARRKQNHLPALYQQLFLLLNKFPGDVARFRLALTMIIAHQRLRNAPVPINDDLSAFHRQLRRTADHVISASSDDKRRRYFKQLLEELDIYQEKLRFWEAPPQVTEPVERLVFMLHRYQNALTDS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

937951 : 953729

Streptococcus_phage(16.67%)

terminase,integrase,holin

attL 936216:936230|attR 952864:952878

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
936216:936230	attL	NA	NA	NA	NA
WP_038415406.1\|937951_939055_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	5.9e-60	39.9
WP_038415408.1\|939066_940320_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.2e-97	46.6
WP_038415410.1\|940660_941833_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.2e-111	50.0
WP_000189281.1\|941829_942018_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_038415413.1\|942014_943415_-	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	1.6e-211	73.2
WP_038415415.1\|943526_944060_+	hypothetical protein	NA	NA	NA	NA
WP_038415416.1\|945305_945647_+	hypothetical protein	A0A2H4J7H0	uncultured_Caudovirales_phage	3.7e-21	51.8
WP_038415418.1\|945643_947254_+\|terminase	phage terminase large subunit	A0A2H4JCA3	uncultured_Caudovirales_phage	1.4e-224	70.1
WP_051979813.1\|947274_949680_+	hypothetical protein	A0A0F6TJC8	Escherichia_coli_O157_typing_phage	5.0e-56	42.6
WP_038415420.1\|949722_951195_-	hypothetical protein	NA	NA	NA	NA
WP_038415422.1\|951187_952111_-	glycosyltransferase family 2 protein	U5P087	Shigella_phage	5.8e-162	92.8
WP_038415424.1\|952107_952470_-	GtrA family protein	B9UDL8	Salmonella_phage	3.5e-46	75.8
WP_038415426.1\|952619_952844_+\|holin	holin	A5LH82	Enterobacteria_phage	2.8e-22	71.0
WP_038415428.1\|952830_953370_+	lysozyme	H6WRZ4	Salmonella_phage	3.8e-89	86.0
952864:952878	attR	NA	NA	NA	NA
WP_038415429.1\|953366_953729_+	hypothetical protein	R9TPM9	Aeromonas_phage	2.2e-16	47.9

DBSCAN-SWA_2

2075494 : 2084842

Morganella_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038415989.1\|2075494_2076958_+	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	2.9e-46	30.5
WP_003857405.1\|2077002_2077206_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	4.4e-14	56.7
WP_023300013.1\|2077493_2077925_+	hypothetical protein	A0A1W6JNV4	Morganella_phage	1.5e-16	35.2
WP_003857403.1\|2077960_2078647_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_038415990.1\|2078737_2079484_-	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_038415991.1\|2079627_2081661_+	peptidyl-dipeptidase Dcp	A0A1V0SIU1	Klosneuvirus	4.9e-20	21.9
WP_071881491.1\|2082275_2082503_-	hypothetical protein	NA	NA	NA	NA
WP_038415992.1\|2083063_2083282_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.4e-18	61.2
WP_038415993.1\|2083649_2084339_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.7e-81	60.5
WP_038415994.1\|2084602_2084842_-	DinI family protein	K7PKM2	Enterobacterial_phage	1.1e-32	91.1

DBSCAN-SWA_3

2090291 : 2099869

Cronobacter_phage(44.44%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038416174.1\|2090291_2090762_+	hypothetical protein	F1C5F1	Cronobacter_phage	1.8e-79	92.9
WP_045621603.1\|2090771_2091164_+	C40 family peptidase	F1C5F2	Cronobacter_phage	3.7e-65	89.5
WP_038416173.1\|2091150_2093628_+\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	92.2
WP_051979825.1\|2093686_2095711_+	hypothetical protein	F1C5A8	Cronobacter_phage	8.9e-38	59.8
WP_038416172.1\|2095740_2097222_-	hypothetical protein	NA	NA	NA	NA
WP_038416171.1\|2097218_2098160_-	glycosyltransferase family 2 protein	U5P087	Shigella_phage	9.5e-160	91.1
WP_006808936.1\|2098156_2098519_-	GtrA family protein	U5P0S6	Shigella_phage	2.6e-49	83.3
WP_038416170.1\|2098631_2098871_+	hypothetical protein	K7P7E2	Enterobacteria_phage	3.5e-26	69.2
WP_038416169.1\|2098870_2099188_+	hypothetical protein	K7PGV5	Enterobacterial_phage	2.4e-22	50.0
WP_038416168.1\|2099197_2099869_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	2.0e-79	58.6

DBSCAN-SWA_4

2576940 : 2644728

uncultured_Caudovirales_phage(13.33%)

tRNA,integrase,plate,transposase

attL 2586445:2586459|attR 2602088:2602102

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003856666.1\|2576940_2578197_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_003856665.1\|2578398_2579010_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_032624093.1\|2579006_2579876_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_003856663.1\|2580001_2580949_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	3.9e-44	37.8
WP_038416189.1\|2581073_2582753_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	6.7e-23	24.3
WP_038416190.1\|2582738_2583797_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_022648382.1\|2583917_2584193_-	stress-induced protein YchH	NA	NA	NA	NA
WP_006810922.1\|2584467_2585052_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_010432886.1\|2585178_2586273_+	redox-regulated ATPase YchF	NA	NA	NA	NA
2586445:2586459	attL	NA	NA	NA	NA
WP_038416191.1\|2586487_2587645_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	1.8e-72	39.4
WP_038416192.1\|2588913_2589843_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	6.1e-10	28.1
WP_038416193.1\|2589889_2590342_-	DNA repair protein RadC	NA	NA	NA	NA
WP_038416194.1\|2590343_2590805_-	hypothetical protein	NA	NA	NA	NA
WP_051979839.1\|2590925_2591318_-	DUF2787 domain-containing protein	NA	NA	NA	NA
WP_022645563.1\|2591587_2591962_-	helix-turn-helix transcriptional regulator	A0A1W6JNW5	Morganella_phage	6.3e-06	40.8
WP_038416196.1\|2592152_2592680_+	hypothetical protein	NA	NA	NA	NA
WP_038416197.1\|2592694_2593054_+	hypothetical protein	NA	NA	NA	NA
WP_038416198.1\|2593084_2593420_+	hypothetical protein	NA	NA	NA	NA
WP_038416199.1\|2593790_2595590_-	hypothetical protein	NA	NA	NA	NA
WP_038416200.1\|2595582_2598555_-	histidine kinase	A0A1B5FPD5	Escherichia_phage	5.8e-78	33.2
WP_005284720.1\|2598551_2599763_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	3.9e-33	28.2
WP_130951939.1\|2600043_2600667_+	hypothetical protein	NA	NA	NA	NA
WP_088581786.1\|2600727_2601874_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.0e-147	92.6
WP_038416202.1\|2602234_2602528_-	hypothetical protein	NA	NA	NA	NA
2602088:2602102	attR	NA	NA	NA	NA
WP_038416203.1\|2602627_2602993_-	hypothetical protein	NA	NA	NA	NA
WP_038416204.1\|2603009_2603390_-	hypothetical protein	NA	NA	NA	NA
WP_038416205.1\|2603471_2603948_-	hypothetical protein	NA	NA	NA	NA
WP_038416206.1\|2604601_2604847_-	hypothetical protein	NA	NA	NA	NA
WP_038416207.1\|2605413_2605620_-	hypothetical protein	NA	NA	NA	NA
WP_038416208.1\|2605756_2606005_-	hypothetical protein	NA	NA	NA	NA
WP_023300305.1\|2607679_2607877_-	hypothetical protein	NA	NA	NA	NA
WP_038416211.1\|2609113_2609443_-	hypothetical protein	NA	NA	NA	NA
WP_051979826.1\|2609439_2610342_-	RHS repeat-associated core domain-containing protein	A0A2H4JHK7	uncultured_Caudovirales_phage	1.7e-28	45.2
WP_038416213.1\|2611272_2611752_-	hypothetical protein	NA	NA	NA	NA
WP_045335064.1\|2613337_2613715_-	hypothetical protein	NA	NA	NA	NA
WP_038416215.1\|2613827_2614580_-	Appr-1-p processing protein	A0A2L1IVW3	Streptomyces_phage	8.4e-18	34.6
WP_038416216.1\|2615354_2615837_-	hypothetical protein	NA	NA	NA	NA
WP_032628402.1\|2616624_2617101_-	hypothetical protein	NA	NA	NA	NA
WP_038416218.1\|2618886_2619252_-	hypothetical protein	NA	NA	NA	NA
WP_023300298.1\|2619268_2619649_-	hypothetical protein	NA	NA	NA	NA
WP_023300299.1\|2619825_2620230_-	hypothetical protein	NA	NA	NA	NA
WP_038416219.1\|2624591_2625032_-	DUF1795 domain-containing protein	NA	NA	NA	NA
WP_023306446.1\|2625239_2625758_-	hypothetical protein	NA	NA	NA	NA
WP_038416220.1\|2625747_2628330_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	5.6e-45	27.5
WP_048966918.1\|2628394_2628844_-	hypothetical protein	NA	NA	NA	NA
WP_038416222.1\|2629196_2630267_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	3.1e-58	43.0
WP_038416223.1\|2630263_2631598_-	membrane protein	NA	NA	NA	NA
WP_038416224.1\|2631600_2632395_-	DcrB-related protein	NA	NA	NA	NA
WP_038416225.1\|2632406_2634335_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.3e-45	27.2
WP_038416226.1\|2634419_2634875_-	hypothetical protein	NA	NA	NA	NA
WP_023300316.1\|2634888_2635650_-	hypothetical protein	NA	NA	NA	NA
WP_038416227.1\|2635646_2637113_-	hypothetical protein	NA	NA	NA	NA
WP_038416228.1\|2637138_2638572_-	serine/threonine protein kinase	M1HKB5	Acanthocystis_turfacea_Chlorella_virus	6.1e-09	27.0
WP_038416229.1\|2638596_2641212_-	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	3.8e-81	31.7
WP_038416230.1\|2641250_2642294_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_023300321.1\|2642290_2644162_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_015570336.1\|2644164_2644728_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_5

2950604 : 2959853

Escherichia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038416354.1\|2950604_2951216_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	A0A2H4UVM0	Bodo_saltans_virus	2.7e-14	29.3
WP_038416355.1\|2951255_2952236_-	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA
WP_038416356.1\|2952428_2953433_+	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	1.1e-33	29.0
WP_038416357.1\|2953482_2954649_-	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	1.8e-112	54.2
WP_038416358.1\|2954902_2956309_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	2.3e-37	28.5
WP_023295000.1\|2956444_2956993_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	9.1e-54	54.4
WP_038416359.1\|2957003_2957894_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	5.3e-27	31.0
WP_032609646.1\|2957906_2958773_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.8e-110	66.3
WP_038416360.1\|2958788_2959853_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.9e-104	54.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP009855

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009855_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009855_1

14545-14679

Orphan

Consensus_repeat	Method
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCACGGTCCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009855_1

>merge|NZ_CP009855|1|14545-14679|CRISPRCasFinder
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCACGGTCCCACCTCCTACTTGCGTGTCAGAACTCATCCTTCAACCCCGCCTGGAATATCGATTCCACACGCCGGATTTAACTGGGACCATGGTCCCAC

>NZ_CP009855|1|1|14545-14679|CRISPRCasFinder
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCACGGTCCCAC	CTCCTACTTGCGTGTCAGAACTCATCCTTCAACCCCGCC
TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCATGGTCCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009855.1\|WP_023327692.1\|16789_17761_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|310773
NZ_CP009855.1\|WP_032636157.1\|18942_19143_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009855.1\|WP_040119772.1\|6293_7382_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009855.1\|WP_032664819.1\|17763_18426_+\|Mediator-of-plasmid-stability	unknown	unknown	gnl\|CDD\|119304
NZ_CP009855.1\|WP_015572055.1\|10323_11334_-\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP009855.1\|WP_023327694.1\|19299_19767_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009855.1\|WP_013087134.1\|13240_14206_+\|ParB/RepB/Spo0J-family-plasmid-partition-protein	unknown	unknown	gnl\|CDD\|184254
NZ_CP009855.1\|WP_040119769.1\|2839_3130_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009855.1\|WP_023327689.1\|12074_13241_+\|plasmid-partitioning-protein-SopA	unknown	unknown	gnl\|CDD\|184261
NZ_CP009855.1\|WP_013087136.1\|16126_16558_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NZ_CP009855.1\|WP_015572058.1\|18429_18693_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009855.1\|WP_008502213.1\|20978_21200_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009855.1\|WP_015572054.1\|8844_9621_+\|phage-integrase-family-protein	unknown	unknown	gnl\|CDD\|334163
NZ_CP009855.1\|WP_015572059.1\|18721_18925_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009855.1\|WP_015572056.1\|14855_16127_-\|Y-family-DNA-polymerase	unknown	unknown	gnl\|CDD\|179607
NZ_CP009855.1\|WP_040119771.1\|4066_6292_-\|exclusion-suppressor-FxsA	unknown	unknown	gnl\|CDD\|284995
NZ_CP009855.1\|WP_040119770.1\|3119_4019_+\|nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|378409
NZ_CP009855.1\|WP_013087126.1\|7874_8165_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009855.1\|WP_040119773.1\|20289_20982_+\|DNA-methylase	unknown	unknown	gnl\|CDD\|184255
NZ_CP009855.1\|WP_013087127.1\|8295_8826_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP009855.1\|WP_023327692.1\|16789_17761_+\|hypothetical-protein	gnl\|CDD\|310773	pfam06406, StbA, StbA protein. This family consists of several bacterial StbA plasmid stability proteins.	6.20247e-125
NZ_CP009855.1\|WP_015572054.1\|8844_9621_+\|phage-integrase-family-protein	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	9.41107e-39
NZ_CP009855.1\|WP_040119770.1\|3119_4019_+\|nucleotide-binding-protein	gnl\|CDD\|378409	pfam10137, TIR-like, Predicted nucleotide-binding protein containing TIR-like domain. Members of this family of bacterial nucleotide-binding proteins contain a TIR-like domain. Their exact function has not, as yet, been defined.	1.08719e-48
NZ_CP009855.1\|WP_015572056.1\|14855_16127_-\|Y-family-DNA-polymerase	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0
NZ_CP009855.1\|WP_040119771.1\|4066_6292_-\|exclusion-suppressor-FxsA	gnl\|CDD\|284995	pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.	2.23984e-36
NZ_CP009855.1\|WP_040119773.1\|20289_20982_+\|DNA-methylase	gnl\|CDD\|184255	PRK13699, PRK13699, putative methylase; Provisional.	2.83741e-158
NZ_CP009855.1\|WP_015572055.1\|10323_11334_-\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	0.000207968
NZ_CP009855.1\|WP_013087134.1\|13240_14206_+\|ParB/RepB/Spo0J-family-plasmid-partition-protein	gnl\|CDD\|184254	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein.	0
NZ_CP009855.1\|WP_032664819.1\|17763_18426_+\|Mediator-of-plasmid-stability	gnl\|CDD\|119304	pfam10784, Plasmid_stab_B, Plasmid stability protein. This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.	4.71088e-22
NZ_CP009855.1\|WP_023327689.1\|12074_13241_+\|plasmid-partitioning-protein-SopA	gnl\|CDD\|184261	PRK13705, PRK13705, plasmid-partitioning protein SopA; Provisional.	0
NZ_CP009855.1\|WP_013087136.1\|16126_16558_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	1.2172e-56

>NZ_CP009855.1|WP_013087134.1|13240_14206_+|ParB/RepB/Spo0J-family-plasmid-partition-protein
MKRAPVIPKHTVKDIRPETEPSAAPAAPMVDSLIARVGAMARGNTILLPVCGREVKFILEAIPGESVETASRVWSGNERDQELLTEDALDDLIPSFMLSGQQTPAFGRRVEGVIEIADGSRRRKAAILTSSDYRVLVGDLDDEQMMALSRLGNDYRPVSAYERGNRYAQRLENDFNGNISALAEAENISRKIITRCINTAHLPKSVVALFTHPGELSARSGETLYKAFSGKEALLLQRTQQLHEQKKAGVIFESEEVIGLLTDVLKEPSGKKVNLNTRHQFVPGATALYKGDKVIFNLDKSRLPAECIEKIESILRDLQKV
>NZ_CP009855.1|WP_023327689.1|12074_13241_+|plasmid-partitioning-protein-SopA
MGLMETLDQCITAGHEMTKAIAIAQFNDDSPEARKITRRWRVGEAADLIGVSSQAIRDAEKAGRLPHPDMEMRGRVEQRVGYTIEQINHMRDVFGTRLRRPDDSVPPVIAVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGERDDAAYAVKATCWPGLDIIPSCLALHRIETELMGRFDNGKLPTEPHMMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLQGFEPDVRILLTKYSNNNGSQSPWMEEQIRDAWGSMVLKNVVRETDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR
>NZ_CP009855.1|WP_015572055.1|10323_11334_-|replication-initiation-protein
MAMENNELPLNLQEVNKTTGEVVKLDVNSASTVQPVALMRLGLFVPTLKSTSRSKTNRKNVTDATEELVQLSIARSEGYTDVRITGSRLDMDTDFKVWLGIIRSMYDFGVKDDTLKLSFVEFVKMCGFDSRRSNKKMRDRISNSLFKLASVTLKFQSETKGWTTHLVQSAYYDITADVVEIRAEPKLFELYQMDRRVLLRLKAIDALQRKESAQALYTYIESLPQNPAPISMKRMRDRLNLTSNLYTQNHTVRKAMAQLKDIGYLDYTEFKRGRATYFSVHYRNPKLISSKVVVPREPEEEVPEQNYDEVIKALKAAGIDPQKLAKALASVKPGND
>NZ_CP009855.1|WP_015572054.1|8844_9621_+|phage-integrase-family-protein
MMPALPGHSGAFSSAQLPVAIDYPAALALRQMALVQDELPKYLLAPEVSALLHYVPDLHRKMLLTTLWNTGARINEALALTRSDFSLAPPYPFVQLATLKQRVEKAARTAGRAPAGSQPHRNVPLSDPQYARQLEMMVATLKIPLERRNKRTGRTEKVRIWEITDRTVRTWLGEAVEAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQFSMAEADAVAMLKKR
>NZ_CP009855.1|WP_013087127.1|8295_8826_+|hypothetical-protein
MCKLTGFIMGLTILLGVTARDAGAATLSEMRMVNASQKPGMVIICSRTSEIPQKGESPVRIESLLRGVVLQNDGDRMMFDVTYTQRNAEESIPFRTEKYRLTTELEATRQKMAIDPETIELSLPRARGLEETFLAGMKASPVSFEDYTNYRVKSATEYLILPGPASPDAPVMHCTL
>NZ_CP009855.1|WP_013087126.1|7874_8165_+|hypothetical-protein
MNMKITLSVLFEALIILGHDRVWMEESEFEHIYGYGCYREIHTWDDRTVAWWDDADDTWYLSTEVDVITPFLGPLPKKEGELSEEKCFQLMTLGRY
>NZ_CP009855.1|WP_040119772.1|6293_7382_-|hypothetical-protein
MLSQLNLRFHKKLIGALKARAGAENVSVNALAERFLDDGLKTAAASDGYFQLIADPETTVRQLYRHIILGQTFGTAPVSRDELRFMLNHARDAFLHGKDRLATLPALGTLLDITRDLLAWQVENGRPLDGPYLKGIFRLAGENWTEEFDRFRAELRPVVDQMYAEYLLRPLESDCFELADVPDSQLAEIFTLPRLKAVFPLVLRGLEWSTEQARALAQELRPAIPAVTQTTEAGSLRLDIRIEGQAPGARPGAWYETPRLHLLITGQDFVVPYGWEVFSELLGLFTLYARNPEALAHGHQGGRVMFSPPGHVTKEGFFGIDGLRIFMPAEAFEALVRELSMRCAEGALAEALTGLRCLYGDL
>NZ_CP009855.1|WP_040119771.1|4066_6292_-|exclusion-suppressor-FxsA
MRILRQMWNQKGLDAAVEDVPEDRYGFSNIAENISRSILSLPQDASNIVGIEGAWGSGKTSLLNLILKNLTLNKDSHTHVLHISPWLSGGTPVEALFLPVATVIQQEMEKRHPPKGFKKLWRKYLLSPEAQKVIEYAQDTSSRVLPLVQYIGQFSSIINWIAGGIKVFSDSRLAVDQKTTTKLRTEIAEQLVSLDLKFIVVMDDLDRLEPSQVAEVFRLVRAVADLPRFTHILCYDRQIITHAVEHALNIEDGSRYLQKIIQLSFKIPRPEAFDLRNEFRQRAEQLYQQINNQPPDSGMVRDLAAVTDTYGAALSTPREIHQAINSLVFLYPGMRDFVYFPDLCLLQLIRVTNPALYDWTEHYLTERSVIEAGQGMLSDREKADFREELIRCMKTFRASNADSFLTLAGWLPGISGHNDEYLNLFEPVSEDFRHIQTTDKRLSSLTHWRYYFAFSSPQNVLPPEFFRQLFEQAGVPEKQQQLSELLLSKINSVGSLSGTWFEHILSRLTPGLIRERNFEECAGLVHFFFDHTDEVSTRFRIRNPWFSLRETGINEVVRHLLKHMQDIDETRTVTLMEKLIVTGASPFWTADFMRDLIWEHGLAQNAVPSPSDALFSRDITERLRDRFAERMNQPELQQQLLLRKSILGYLYAWRDMSSVETVKRWIREVTSTDEGLVDLLIRLQTSVFSSNKGAYRRIARDQVSPFFDDWPAVEEKLKGMLSGNELTPEQEALKTALENDD
>NZ_CP009855.1|WP_040119770.1|3119_4019_+|nucleotide-binding-protein
MAIDIFQSLKNCVFDLQRADVQNYQQPLKQLARLLNSENLQSVNAHLTRNVELDAFLARSEETESSMAGSAVLQWPDEPADILGLKLLLIEKMAADNNFSFNFCHTFFYDRNIIESIRKFTSSLVVPFVRDYQLYVENQHDPEPAVFRPVSRKIFIVHGHDNDALQSVARFISRIGLEEIILSERPDGSRTIIEKIEAESGDVSFAIVLMTPDDSGSALASESTRLRARQNVLYELGYFAGKLGRGKVLVLRKGDIEIPSDLAGVLYTELDEHGGWKRKLLSELAYAGVPFDKEKALSA
>NZ_CP009855.1|WP_040119769.1|2839_3130_+|hypothetical-protein
MSVKITGLDKMQKQLKEVERATEALNGSYDVHFDANDPVSIENAIQEAYSMVHERASGYASNPMVSPLIEHMKENLRQQILDSAEQQRQENGQDGD
>NZ_CP009855.1|WP_015572056.1|14855_16127_-|Y-family-DNA-polymerase
MFALADVNSFYASCERVFRPDLKGKPVVVLSNNDGCVIARSAEAKPWIKMGTPWFQMKNETYPEKIYAFSSNYELYASMSARVMSCLEELAPRVEQYSIDEMFLDLTGVEHCMDLEDFGRQLRQHVYDCTRLTIGVGAGPTKTLAKSAQWASKEWKQFRGVLALTRGNPQRTRKLLSLQPVEEIWGVGNRIARKLNVLGIRTALDLALTNPAFIRKNFSVVLERTVRELNGESCMSLEEAPPTKQQIVCSRSFGEKITEYDSLRQAVCQYAERASEKLRKERQYCRHISVFIKTSPFAVKEPYYGNVATEKLLTPTQDTRDIIAAATTALERIWKDGHLYAKAGVMLNDFTGSGVSQLQLFDERPPRPHSSELMKVLDGINHSGLGQIWFAGRGIAPSWQMKRDMLSPAYTTRWKDIPVARIR
>NZ_CP009855.1|WP_013087136.1|16126_16558_-|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MKLQLFSTGKALPPQAHPLFADLASCGFPSPAADYVESDLDLHDYCIRHPSATYYLRASGDSMSDGSLYNGDLLVVDSAEKPRHGDIVVASVQGEFTVKRLLLTPRLTLQPMNAAWPPIYPDPDDLDIFGVVTHIIHRPREMY
>NZ_CP009855.1|WP_023327692.1|16789_17761_+|hypothetical-protein
MNIYCDDGSTNVKLAWFEGNELQTRVSANSFRHGWKVAEFSAATFNYQVGTLKYTWDSVSRDAIPTTNVEYQYGDLNLLAVHHALLNSGLEPQPVSLTVTLPLSEYYDGDCQRNEENIRRKRENLMRELVLNKGRAFTVTDVKVMPESLPAAFSRLAELKPGPAETTLIIDLGGTTLDAGVIVGQFDDISAVHGNPSVGVSQVTRAAAGALRAADSETSALIADTVIRNRNDRQYLQRVINDAGKIDDVLNKITEAITSLGARVTSELTVFRSVNRVFLVGGGASLIEEAIRQAWPLAPDRIEVIGDPQLALAREIALYNKED
>NZ_CP009855.1|WP_032664819.1|17763_18426_+|Mediator-of-plasmid-stability
MPDGQYSFYLHSDDRTDITAMATISTISQPLRGDFIRTAATAGAVMYQTDARLPALIPVFFDGHLSAIRLCAVMALVSGTWSSLSGLPDEPDGGVAALAMSPETEYQRRRYTLTLQDDRSSERVERVLTGVSSRLRGELLRNLIITGLALHTTAPELPRLLASMPVPPGTVSELQVLVQQMAGTADVSMAAVPEKPAEPAAPVSAEATSIKKNMRRAFGD
>NZ_CP009855.1|WP_015572058.1|18429_18693_+|hypothetical-protein
MSVIKQKAVQCIHNFLRARNVPESQWPERVKKTGRGMILAGVAVVVPGVLVDNISLPVTIAMQVCYASLIGLGVLLAFDKKKPEGRG
>NZ_CP009855.1|WP_015572059.1|18721_18925_+|hypothetical-protein
MLLEELTGDERTLVVVALQALFRERLSASNAVFTVCSLSGKEQPPEDIFGLREVEDALRRIGAAPAR
>NZ_CP009855.1|WP_032636157.1|18942_19143_-|hypothetical-protein
MNPCDRSGRVSVKARRVIFYGRCKAEEKFHIKLKCDLHHKTIHYNRRKIKRLVLTAGMRCHPAVFF
>NZ_CP009855.1|WP_023327694.1|19299_19767_+|hypothetical-protein
MFRLTCIELDNGEFAVYINHHYLGSEDASGERLSLGEVLEQLSLLPGVELQTLLEPVPECDDWCWNDIADRVLPSRPACRDDVTVAGLIARLKQYPPDALCMGTFWLEDDFLSLDGSLSEEEIAEAMRICDHSHDAGIGFNWDTLQFAIDHVKGR
>NZ_CP009855.1|WP_040119773.1|20289_20982_+|DNA-methylase
MSRFILGDCVQVTSRFPARAVDFILTDPPYLVGYKDRTGRTLAGDNSSEWLQPACHEMYRVLKNDSLMVSFYAWNRADLFLNAWKTAGFKVVGHIVFAKSYASKSTFVGYTHESAYLLAKGRPQTPDRPIPDVIPWKYTGNRHHPTEKPVQSLRPLIESLTRPGAIVLDPFAGSGSTCVAAAEASRRYIGIEMLEQYHAAGVRRLAQVERARRMPAANDGAFYPDYPEAA
>NZ_CP009855.1|WP_008502213.1|20978_21200_+|hypothetical-protein
MNYPGLENLRADVAALSNAMCDVRMLLNRLESQHRHDAATLTERMAAQTLRRINTLLLEAYREALVLDETFQD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP035636	Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence	100226-100264	0	1.0
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP017182	Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence	1315-1353	0	1.0
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP017182	Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence	1402-1440	0	1.0
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP031569	Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence	7815-7853	0	1.0
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP050011	Citrobacter sp. Y3 plasmid unnamed2, complete sequence	27572-27610	0	1.0
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP019840	Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence	70340-70378	0	1.0
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP022149	Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence	50338-50376	0	1.0
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP009855	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence	14593-14631	0	1.0
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP008907	Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence	83191-83229	0	1.0
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP026851	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1	65584-65622	0	1.0
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_LT991956	Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2	52487-52525	0	1.0
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP029719	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence	1341-1379	0	1.0
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP012428	Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence	20127-20165	1	0.974
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NC_014107	Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence	48095-48133	1	0.974
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP046273	Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence	40032-40070	1	0.974
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP012169	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence	40032-40070	1	0.974
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP042541	Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence	40032-40070	1	0.974
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP031723	Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence	50311-50349	1	0.974
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP042567	Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence	40032-40070	1	0.974
NZ_CP009855_1	1.1\|14593\|39\|NZ_CP009855\|CRISPRCasFinder	14593-14631	39	NZ_CP039454	Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence	72766-72804	2	0.949

1. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP035636 (Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

2. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

3. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP017182 (Enterobacter kobei strain DSM 13645 plasmid pDSMZ13645, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

4. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP031569 (Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

5. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP050011 (Citrobacter sp. Y3 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

6. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP019840 (Enterobacter roggenkampii strain R11 plasmid pASM1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

7. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP022149 (Enterobacter roggenkampii strain 704SK10 plasmid p704SK10_1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

8. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP009855 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

9. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP008907 (Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

10. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP026851 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

11. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_LT991956 (Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

12. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP029719 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgcc	Protospacer
***************************************

13. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP012428 (Klebsiella pneumoniae strain KP5 plasmid pSg1-2, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

14. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NC_014107 (Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

15. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP046273 (Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

16. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP012169 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

17. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP042541 (Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

18. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP031723 (Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

19. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP042567 (Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence) position: , mismatch: 1, identity: 0.974

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtgtcagaactcatccttcaaccccgtc	Protospacer
*************************************.*

20. spacer 1.1|14593|39|NZ_CP009855|CRISPRCasFinder matches to NZ_CP039454 (Enterobacter bugandensis strain 220 plasmid pSurvcare220, complete sequence) position: , mismatch: 2, identity: 0.949

ctcctacttgcgtgtcagaactcatccttcaaccccgcc	CRISPR spacer
ctcctacttgcgtttcagaactcatccgtcaaccccgcc	Protospacer
************* ************* ***********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8844 : 57648

Macacine_betaherpesvirus(17.65%)

protease,integrase,transposase

attL 7237:7251|attR 12182:12196

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
7237:7251	attL	NA	NA	NA	NA
WP_015572054.1\|8844_9621_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	7.0e-52	91.2
WP_015572055.1\|10323_11334_-	replication initiation protein	J9Q7H0	Salmonella_phage	6.3e-85	55.2
WP_023327689.1\|12074_13241_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	5.5e-218	94.3
12182:12196	attR	NA	NA	NA	NA
WP_013087134.1\|13240_14206_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	9.8e-136	76.9
WP_015572056.1\|14855_16127_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.3e-153	62.7
WP_013087136.1\|16126_16558_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	53.3
WP_023327692.1\|16789_17761_+	hypothetical protein	A0A222YXF2	Escherichia_phage	1.1e-73	47.4
WP_032664819.1\|17763_18426_+	Mediator of plasmid stability	NA	NA	NA	NA
WP_015572058.1\|18429_18693_+	hypothetical protein	NA	NA	NA	NA
WP_015572059.1\|18721_18925_+	hypothetical protein	NA	NA	NA	NA
WP_032636157.1\|18942_19143_-	hypothetical protein	NA	NA	NA	NA
WP_023327694.1\|19299_19767_+	hypothetical protein	NA	NA	NA	NA
WP_040119773.1\|20289_20982_+	DNA methylase	A0A2K9VH43	Faecalibacterium_phage	1.7e-28	36.7
WP_008502213.1\|20978_21200_+	hypothetical protein	NA	NA	NA	NA
WP_015572060.1\|21255_21678_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_040119774.1\|22034_22463_+	antirestriction protein	NA	NA	NA	NA
WP_040119775.1\|22505_22916_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_023345621.1\|22966_23164_+	hypothetical protein	NA	NA	NA	NA
WP_040119777.1\|23973_24267_+	hypothetical protein	NA	NA	NA	NA
WP_040119778.1\|24283_25105_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.0e-49	41.8
WP_032664846.1\|25133_25673_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_040119780.1\|26271_26658_+	conjugal transfer protein	NA	NA	NA	NA
WP_015572084.1\|26696_27338_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_015572086.1\|27534_27888_+	hypothetical protein	NA	NA	NA	NA
WP_015572087.1\|27891_28194_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_003846919.1\|32421_32592_-	hypothetical protein	NA	NA	NA	NA
WP_040119781.1\|32648_33902_-	lactose permease	NA	NA	NA	NA
WP_040119782.1\|33953_37028_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.9
WP_040119783.1\|37150_38233_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	1.2e-190	98.9
WP_015572120.1\|38585_38984_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_023157068.1\|38984_39596_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_071602398.1\|39974_40217_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004118251.1\|40547_40841_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
WP_004152282.1\|40939_41707_-	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2
WP_004118246.1\|41707_42664_-	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	NA	NA	NA
WP_004118243.1\|42660_43659_-	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_004118241.1\|43655_44558_-	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_040119784.1\|44602_46927_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_004118237.1\|47013_47967_-	fec operon regulator FecR	NA	NA	NA	NA
WP_004118235.1\|47963_48485_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_040119785.1\|48914_50039_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	7.0e-202	92.2
WP_088581786.1\|51287_52435_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.0e-147	92.6
WP_071881515.1\|53062_53491_-	S-(hydroxymethyl)glutathione synthase	NA	NA	NA	NA
WP_040119786.1\|53684_54680_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.8e-20	28.6
WP_032629948.1\|55524_56676_-\|protease	trypsin-like serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	7.5e-26	30.3
WP_023332903.1\|56700_57648_-\|protease	M48 family metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP009857

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 36980

Escherichia_phage(33.33%)

protease,transposase,integrase

attL 1445:1459|attR 35475:35489

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1445:1459	attL	NA	NA	NA	NA
WP_001067855.1\|2351_3056_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_032738601.1\|3303_3681_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_011152976.1\|3881_4541_-	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	4.2e-130	99.1
WP_001067855.1\|4747_5452_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_012954666.1\|6129_6774_+	quinolone resistance pentapeptide repeat protein QnrB19	NA	NA	NA	NA
WP_088169311.1\|6782_7100_-	hypothetical protein	NA	NA	NA	NA
WP_000608644.1\|7263_8526_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_137922728.1\|8775_9984_+	methyl-accepting chemotaxis protein	A0A1B0VAH3	Salmonella_phage	1.4e-51	100.0
WP_002210513.1\|10311_11073_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002904004.1\|11093_11954_-	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_071538079.1\|11917_12100_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|12090_12795_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071881521.1\|12685_12991_-	DUF4158 domain-containing protein	Q1MVP5	Enterobacteria_phage	7.3e-21	97.9
WP_001217881.1\|13152_13710_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_000027057.1\|13892_14753_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_000381802.1\|15148_15682_-	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA
WP_004187443.1\|16361_18449_-	hypothetical protein	NA	NA	NA	NA
WP_004206886.1\|18461_19412_-	DsbC family protein	NA	NA	NA	NA
WP_040119761.1\|19422_20685_-	hypothetical protein	NA	NA	NA	NA
WP_004187436.1\|20729_21125_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_032451295.1\|21229_21613_-	DUF1496 domain-containing protein	NA	NA	NA	NA
WP_040119742.1\|21692_22346_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_004187429.1\|22438_22696_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_020277900.1\|22664_23030_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_049866821.1\|23122_23557_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	55.3
WP_040119741.1\|23544_24810_+	translesion error-prone DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	4.4e-112	50.8
WP_040119740.1\|24832_25681_-	3'-5' exonuclease	A0A1D9C9N8	Salinivibrio_phage	6.6e-27	38.9
WP_004187415.1\|25683_26004_-	hypothetical protein	NA	NA	NA	NA
WP_049866823.1\|26148_26388_-	hypothetical protein	NA	NA	NA	NA
WP_004187413.1\|26854_27064_-	hypothetical protein	NA	NA	NA	NA
WP_011091034.1\|27066_27285_-	hypothetical protein	NA	NA	NA	NA
WP_040119738.1\|27329_28013_-	hypothetical protein	NA	NA	NA	NA
WP_045342057.1\|28029_29304_-	antitoxin RelB	NA	NA	NA	NA
WP_040119737.1\|29830_30187_+	hypothetical protein	NA	NA	NA	NA
WP_023302504.1\|30164_30743_+	hypothetical protein	NA	NA	NA	NA
WP_040119736.1\|30744_31152_+	hypothetical protein	NA	NA	NA	NA
WP_023302505.1\|31304_31850_-	hypothetical protein	NA	NA	NA	NA
WP_040119735.1\|31985_32447_+	hypothetical protein	NA	NA	NA	NA
WP_040119734.1\|32443_32692_+	helix-turn-helix transcriptional regulator	A0A248SLB9	Klebsiella_phage	1.2e-10	56.9
WP_040119733.1\|32684_33272_+	restriction endonuclease	NA	NA	NA	NA
WP_040119732.1\|33268_33754_+	hypothetical protein	NA	NA	NA	NA
WP_040119731.1\|33750_33999_+	hypothetical protein	NA	NA	NA	NA
WP_004187383.1\|34017_34758_+\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	9.5e-22	51.6
WP_011091047.1\|34998_35973_+	hypothetical protein	A0A0A7NPX4	Enterobacteria_phage	6.1e-85	52.0
35475:35489	attR	NA	NA	NA	NA
WP_011154451.1\|35975_36419_+	plasmid stability protein B	NA	NA	NA	NA
WP_040119730.1\|36428_36980_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.7e-20	32.0

DBSCAN-SWA_2

40225 : 43229

Salmonella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040119757.1\|40225_41509_+	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	1.5e-62	41.2
WP_040119756.1\|42116_42296_+	hypothetical protein	NA	NA	NA	NA
WP_040119755.1\|42368_43229_+	DUF4942 domain-containing protein	I6RTT5	Marinomonas_phage	5.6e-18	30.4

DBSCAN-SWA_3

46898 : 48865

Pseudomonas_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040119829.1\|46898_47333_+	single-stranded DNA-binding protein	A0A0U4K5C0	Pseudomonas_phage	7.5e-27	48.8
WP_000608644.1\|47602_48865_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP009856

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8438 : 17878

Escherichia_phage(57.14%)

integrase,transposase

attL 3325:3340|attR 20773:20788

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3325:3340	attL	NA	NA	NA	NA
WP_001067855.1\|8438_9143_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_072143941.1\|9738_9990_-	hypothetical protein	NA	NA	NA	NA
WP_040119803.1\|10147_10579_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-28	52.5
WP_004118291.1\|10578_11850_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	4.9e-151	63.3
WP_012600007.1\|11931_12909_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	2.6e-88	54.4
WP_000368714.1\|12905_14111_-	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
WP_000339857.1\|14526_14796_+	hypothetical protein	NA	NA	NA	NA
WP_004118283.1\|15152_16019_-	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_000764642.1\|16786_17044_+	hypothetical protein	NA	NA	NA	NA
WP_000015958.1\|17101_17878_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
20773:20788	attR	NA	NA	NA	NA

DBSCAN-SWA_2

35933 : 46388

uncultured_Caudovirales_phage(85.71%)

bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032722221.1\|35933_36485_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	8.1e-18	33.1
WP_099755463.1\|36774_36972_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_001549890.1\|38089_38422_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004118521.1\|38418_39141_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.5e-96	73.0
WP_001549888.1\|39198_39627_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	70.7
WP_001549887.1\|39676_40960_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.9e-175	74.6
WP_001549886.1\|41055_41409_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	5.9e-22	57.1
WP_001549885.1\|41892_43371_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.6e-198	74.0
WP_004118529.1\|43389_44217_+	universal stress protein	NA	NA	NA	NA
WP_001549953.1\|44288_45485_-	MFS transporter	NA	NA	NA	NA
WP_004118534.1\|46013_46388_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	4.5e-28	56.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP009858

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 9073

Burkholderia_phage(50.0%)

transposase,integrase

attL 2606:2623|attR 9790:9807

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_108742639.1\|1118_1781_+	hypothetical protein	NA	NA	NA	NA
WP_001749988.1\|2132_2702_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.2e-36	43.2
2606:2623	attL	NA	NA	NA	NA
WP_015344971.1\|2841_3126_-	hypothetical protein	NA	NA	NA	NA
WP_000845048.1\|3094_4108_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_004201280.1\|4263_4737_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001144737.1\|4957_5224_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_001389365.1\|5366_6131_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_024139167.1\|6172_6385_+	hypothetical protein	NA	NA	NA	NA
WP_004098817.1\|6391_7606_+	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001288432.1\|7639_9073_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
9790:9807	attR	NA	NA	NA	NA

DBSCAN-SWA_2

22119 : 22653

Wolbachia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000792636.1\|22119_22653_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.8e-21	33.9

DBSCAN-SWA_3

26670 : 34524

Staphylococcus_prophage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152397.1\|26670_27990_+\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004199234.1\|28239_29121_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_001067855.1\|29645_30350_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_012561167.1\|30922_31288_-	hypothetical protein	NA	NA	NA	NA
WP_012561166.1\|31287_34524_-	conjugative relaxase	U5J9B0	Bacillus_phage	2.4e-05	27.3

DBSCAN-SWA_4

46238 : 47932

Morganella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000861760.1\|46238_46679_+	translesion error-prone DNA polymerase V autoproteolytic subunit MucA	A0A1W6JNS2	Morganella_phage	1.2e-27	48.8
WP_001749980.1\|46666_47932_+	translesion error-prone DNA polymerase V subunit MucB	F1C5A5	Cronobacter_phage	2.2e-119	53.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage