CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP008941	Candidatus Paracaedibacter acanthamoebae isolate PRA3, complete genome	3 crisprs	cas3,RT,DinG,DEDDh	1	1	7	1
NZ_CP008942	Candidatus Paracaedibacter acanthamoebae isolate PRA3 plasmid, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008941_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008941_1

720827-720931

Orphan

Consensus_repeat	Method
CCGAAGATTGAGACTTCGATAGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008941_1

>merge|NZ_CP008941|1|720827-720931|CRISPRCasFinder
CCGAAGATTGAGACTTCGATAGTGGCCTCTTAGCATTGTAAGTAGAAGCCATGTCTGCGTCACTCTCGCCTCCGCTTGAGTCCGAAGATTGAGACTTCGATAGTG

>NZ_CP008941|1|1|720827-720931|CRISPRCasFinder
CCGAAGATTGAGACTTCGATAGTG	GCCTCTTAGCATTGTAAGTAGAAGCCATGTCTGCGTCACTCTCGCCTCCGCTTGAGT
CCGAAGATTGAGACTTCGATAGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008941.1\|WP_038463806.1\|722641_724411_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP008941.1\|WP_038463799.1\|717224_718310_+\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
NZ_CP008941.1\|WP_051908507.1\|710913_712290_-\|leucyl-aminopeptidase-family-protein	unknown	unknown	gnl\|CDD\|238247
NZ_CP008941.1\|WP_084675896.1\|725531_726566_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350345
NZ_CP008941.1\|WP_038463793.1\|714246_714921_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP008941.1\|WP_075261554.1\|712383_713712_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341039
NZ_CP008941.1\|WP_038463823.1\|728206_728662_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379402
NZ_CP008941.1\|WP_038467006.1\|716426_717218_+\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181260
NZ_CP008941.1\|WP_156956628.1\|709226_709445_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_051908511.1\|729001_729718_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|225438
NZ_CP008941.1\|WP_038463790.1\|709431_710826_-\|porin	unknown	unknown	gnl\|CDD\|238208
NZ_CP008941.1\|WP_038463818.1\|727328_727517_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_051908514.1\|730596_731202_+\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NZ_CP008941.1\|WP_156956629.1\|714034_714172_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038463809.1\|724629_725493_-\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|238576
NZ_CP008941.1\|WP_038463802.1\|718333_720070_+\|signal-peptide-peptidase-SppA	unknown	unknown	gnl\|CDD\|273226
NZ_CP008941.1\|WP_038463796.1\|714917_716180_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274034
NZ_CP008941.1\|WP_038463815.1\|726750_726978_-\|DUF1467-family-protein	unknown	unknown	gnl\|CDD\|369320
NZ_CP008941.1\|WP_038463820.1\|727789_728197_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038463826.1\|729710_730592_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225088

Protein	Function_ID	Function_description	E-value
NZ_CP008941.1\|WP_038463806.1\|722641_724411_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.32896e-135
NZ_CP008941.1\|WP_038463799.1\|717224_718310_+\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
NZ_CP008941.1\|WP_051908507.1\|710913_712290_-\|leucyl-aminopeptidase-family-protein	gnl\|CDD\|238247	cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.	2.15033e-162
NZ_CP008941.1\|WP_038467006.1\|716426_717218_+\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181260	PRK08159, PRK08159, enoyl-[acyl-carrier-protein] reductase FabI.	9.49723e-165
NZ_CP008941.1\|WP_038463793.1\|714246_714921_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.38795e-103
NZ_CP008941.1\|WP_038463809.1\|724629_725493_-\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	6.70958e-64
NZ_CP008941.1\|WP_038463823.1\|728206_728662_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379402	pfam13936, HTH_38, Helix-turn-helix domain. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	0.00129003
NZ_CP008941.1\|WP_084675896.1\|725531_726566_-\|hypothetical-protein	gnl\|CDD\|350345	cd14495, PTPLP-like, Protein tyrosine phosphatase-like domains of phytases and similar domains. This subfamily contains the tandem protein tyrosine phosphatase (PTP)-like domains of protein tyrosine phosphatase-like phytases (PTPLPs) and similar domains including the PTP domain of Pseudomonas syringae tyrosine-protein phosphatase hopPtoD2. PTPLPs, also known as cysteine phytases, are one of four known classes of phytases, enzymes that degrade phytate (inositol hexakisphosphate [InsP(6)]) to less-phosphorylated myo-inositol derivatives. Phytate is the most abundant cellular inositol phosphate and plays important roles in a broad scope of cellular processes, including DNA repair, RNA processing and export, development, apoptosis, and pathogenicity. PTPLPs adopt a PTP fold, including the active-site signature sequence (CX5R(S/T)) and utilize a classical PTP reaction mechanism. However, these enzymes display no catalytic activity against classical PTP substrates due to several unique structural features that confer specificity for myo-inositol polyphosphates.	3.48002e-71
NZ_CP008941.1\|WP_075261554.1\|712383_713712_-\|MFS-transporter	gnl\|CDD\|341039	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily. AmpG acts as an inner membrane permease in the beta-lactamase induction system and in peptidoglycan recycling. It transports meuropeptide from the periplasm into the cytosol in gram-negative bacteria, which is essential for the induction of the ampC encoding beta-lactamase. The AmpG family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.7613e-115
NZ_CP008941.1\|WP_038463790.1\|709431_710826_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	3.84007e-09
NZ_CP008941.1\|WP_051908514.1\|730596_731202_+\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	1.64281e-19
NZ_CP008941.1\|WP_038463802.1\|718333_720070_+\|signal-peptide-peptidase-SppA	gnl\|CDD\|273226	TIGR00705, Protease_4, signal peptide peptidase SppA, 67K type. This model represents the signal peptide peptidase A (SppA, protease IV) as found in E. coli, Treponema pallidum, Mycobacterium leprae, and several other species, in which it has a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half. This enzyme was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	3.79727e-81
NZ_CP008941.1\|WP_038463796.1\|714917_716180_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	7.21917e-158
NZ_CP008941.1\|WP_038463815.1\|726750_726978_-\|DUF1467-family-protein	gnl\|CDD\|369320	pfam07330, DUF1467, Protein of unknown function (DUF1467). This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.	5.63358e-12
NZ_CP008941.1\|WP_051908511.1\|729001_729718_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	2.82934e-91
NZ_CP008941.1\|WP_038463826.1\|729710_730592_+\|FtsX-like-permease-family-protein	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	2.48001e-17

>NZ_CP008941.1|WP_038463802.1|718333_720070_+|signal-peptide-peptidase-SppA
MFKFIRRALGLIFSTIGFAVVVILIIGYMKFVRSAQEDPDSDPMTDNSVLQLEVGGLPIKDFNLPTSLLSQLQKYRTQSLIELVELVNEARTDSRVKAISLSIVGNTLSAAQAEELRTALEEFRKAGKKIYAFAYAFGDNSNGTSSYYLASVADKIYMQPHGAVSIIGASLESFFLKDFLDEFDITVQAARRNEQKGVIDRFTRTDFTPEVKENLYSVISSILSHIQDASAKGRGLDKETYVTLMNTAPHQDRQAIQTKLLDDLIYRDQVRDKIKVELGNNVAFVTEKGYSPQGKRPQSKNKIGVILLEAEVPPSGSTALTMNDPYAPESLDKSFEMALKDPAVKAIVFRVNTPGGAVSGAETIYRAVKRTVDKGVPVIISMGSVAASAGYYMAAPATKIYANAMTLTGSIGIAMAKPNIGKATENYGITWDRVQIGDNAGMWSMTQDFNEAAWKKVQESLDIFYANFTQTVAEGRKLSVDNVKSIAGGQVWSGLQAKENGLVDEIGGFFAAMDEAKKIANVADTEDPNIVIFNRVNVGLPLLFSLLGEESIAIIKQAIGINTELSHTTATTRVRLVM
>NZ_CP008941.1|WP_038463799.1|717224_718310_+|chorismate-synthase
MPGNTIGQAFTLTTWGESHGTAIGGVLDGVPPGFPLDIKKIQQALDRRKPGGHHRLTSARQESDQIHILSGVYEGKTLGTPLSFLIYNTDQRSGDYDPFKNIYRPGHADYSYTMKYGHVDHRGGGRASARETAIRVAAGAIAHQILQLSFPTLQTTAAVIQLGTQKLSSTWLGHPYPENPLFCPDEKSTQSWTPYLQDIKNQGRSVGALIEVHVKNMPSGLGEPVYDKLDADLAKALMSINAVKGVEIGEGFGCVTSENGYDELSAETASKHLTNKAGGIVGGISTGQDIICRVALKPTSSTPQSRKTLTKDEIPVDVSITGRHDPCVGIRAVPIVEAMVSLVIMDHFLRWQGQCGSKFRK
>NZ_CP008941.1|WP_038467006.1|716426_717218_+|enoyl-ACP-reductase-FabI
MAGKRGVIMGVANDHSLAWGVSQALAAQGAELAFTYQGETLMKRVSPLAAELGSDFMIECDVSVEGDIAKAFETIGKKWGKVDFVVHAIAFADKNELKGNYRDTSRSNFLNSMNISCYSFTETCREAAKYMKEGGSLLTLTYYGAEKVVPHYNVMGVAKAALEASVRYLAADLGTESIRVNAISAGPVKTLAAAGIGDFRYILKWNQFNSPLRRNTTLEDVGGAGVYLLSDLAAGVTGEIHHVDSGYNIIGMKAIDAPDITLE
>NZ_CP008941.1|WP_038463796.1|714917_716180_-|lipoprotein-releasing-ABC-transporter-permease-subunit
MFSKFERMIAFRYLRSSRQEGFVSVIAWFSFIGIALGVATLIIVMAVMNGFRQELLQRIIGMNGHVAINAINRPFDDFDKVADAVRKVKGVVQVYPEIERQAMLMYRAQARGVQVHGMRPADLKKRDFIKNNIVDGTLDQFGVFEHDDVKTETVAIGVTLARKTGIVVGDRISLMSPEGTASAFGTLPRQKSFVVAAIFKAGVFQYDSGVIFIPLASAQSFFRLGDGVTNLDVFVDNPDKVGQRSFQIQNTIGQGYQLFDWQNSNNTLFQAVEVERNVMFIILTLIILIAAFNILSSLIMLVKDKTRDIAIMRTMGASQKSMMRIFFLTGSTLGLVGTALGLTVGLAFALNIESIRQGLQSLLGTNLFNEEIYFLTQLPCKLDPLDVTITVVTALILTFLSTLYPSWRAARLDPVEALRQ
>NZ_CP008941.1|WP_038463793.1|714246_714921_-|ABC-transporter-ATP-binding-protein
MTQTTLILDSITRTFEQAEETLEILKNINFQIQSGEIVALVGHSGAGKSTLLQIAGLLEPPTTGRVIMAGKDTVQLSDTERTHLRNRYVGFVYQFHHLLPEFSAVENVMVPQLIANTSAAQARLKAKDLLVKLGLSHRLEHRPKKLSGGEQQRVAIARALANSPKILLADEPTGNLDYATSDIVFGEMMQLVRETGMSALIATHNSDLAKKMDRIIEIKAGQLV
>NZ_CP008941.1|WP_156956629.1|714034_714172_-|hypothetical-protein
MANDDLCDFEIPDRAALVRKKEEVGEKVTKNFLFPAEAPETLADK
>NZ_CP008941.1|WP_075261554.1|712383_713712_-|MFS-transporter
MIIKKCKTFATLHHLFQSVDIRIVRILALGFVSGLPFLLTLSTLSYWLAEDGATNTAIGLFMIVSLPYSFKFIWAPVVDYVGIPFLTKRWGKRRSWLLVSQVLLTFSLFAMGFCSPAENLLQLGVTATLVAVFSATQDIIIDAYRIETISAKNCGTAAAFETIGFRFGMLISGAGALYLAAIFSWQHAYHIMAFLSILSLGLTCIIPEPISTTIVKPDFSGRQHHFLKRLASFFILPIRQFAHKDKLWMILAFIFFFKMTDTVLNSMSAPFLCDLGFSKLEFANVSKLFGITLMVIGGLIGGLMIQRLGIYQSATMCAVLQAVSALMFTIQSLSGHDSNILMITVGSESLCSGMTSTIFIALLSGLCTQPHTASHFTLLYSFGSLCRVGTSAMAGWLADQVSWSVLFLFCFAALVPSVILLNGILSDTADSSESDVQQANRA
>NZ_CP008941.1|WP_051908507.1|710913_712290_-|leucyl-aminopeptidase-family-protein
MLNTCFTESASTVTPIRLCNPSTLSDLLKHRPLYVQTWVEQHEFKAMPSSILLVPNGEGQIDEIFWGLDETPWQFASLAGKLPSGTYQIDDWGDLDQSLACLTWALASYQFTRYKEQKNKKQVILVWPSAVNRNWVETAKDAITLVRDLINTPACDLTPVTLADAVKTATANFGAQLKIILGDELQHEFPAIHTVGKAAEIAPRLIDLRWSHPQAKKSIAIVGKGVCFDSGGLDIKPSAGMFMMKKDMGGAAHALALAMMIMKLNLPISLHLLIPAVENAVSGNAMHPMDIIKTRKGLTVEIGNTDAEGRLILCDALYEACQSKPDLVIDFATLTGAARIALGTELPAVFSNNQEISDALLAAGCEMQEPLWPMPLHKPYVKLLKSPIADLSSTGKSSYGGAIVAALFLEQFVEKDINWIHIDHMAWNLSSTPGKPEGGEAMGLLPAFKFISNLLEQA
>NZ_CP008941.1|WP_038463790.1|709431_710826_-|porin
MNNFIKYFLVTVTVCIPFSAEAKKCKKKVKCAPHQAKIVKPKRDAAPNYSPDYRTQTRLAKLETKIKKLEESALREPKPALVPEKLPKSLVTSGNPKSSVKLSGQINRFVAYRNNGNQSRIEHLDSTASSSRVNITGQSNINSKFQIQAVIETELTDGVQSAAADADIGSAPIGSAYGDTSPIVRNRRLEAVFKHDTFGTLFIGKGSTSSDGVSEVDFSGTTAISNASEASNNLGGFRFYNKKLRTSANQRIASDAFRNMDGLQRANRIRYDSPSFKGVVIGLTHTNGDQSDQSIKYAAKFGKTKVGAAIAHTYQPFSTVTVNNATQSRCHHTYHGSFAIYNNGFSFGAAGGIEKYRMKSAVKQLKRKQATFWFLKAGYQTKFINCGKTAFAIDWGYSKANTLLETNLNLANNERAKSYALTIVQNFDSAGTEVYFSAREYHFEQPFASYKNAVVVLVGTRVKF
>NZ_CP008941.1|WP_156956628.1|709226_709445_-|hypothetical-protein
MSNSKVYFILMATISLVACSGNYKPELLPEPNAIKEGKGLFSGEDGTLTLYASDECVCESADATKATARSTK
>NZ_CP008941.1|WP_038463806.1|722641_724411_-|ABC-transporter-ATP-binding-protein
MMKIKAWHVFACILDATGRYKLSIAFMLFLAICWAVDVSLHSFLQKLIIDRITDQPKNIFQAVGTPAILFVLLSFFMSTVFRLYEYLVSVKMIPEMRKYVGQRYISNLLKQSHTFFQDQFSGSLANKINDLTMYVPEIIQIVIDRFFSHFLMLIIATYTLWTVNPVFAYLMIGWTVFFIFLSLIIANRLTQLSDKWSECGSINTGRIVDILSNIMTVRLFARRKYEYAYMSAGFEDAAQAEQRLNWNYFWVWFAYGYSFVFTLALNMYFLLKKRELGVITVGDFALVISLNVGIVDVLWQLTWQFSQFTKCYGKISQALRVLLQPVEITDVADAKPLVVNRGIIKFQNVTFCYKAVDPLFKDLSVTIERGQKVGLVGYSGSGKTTFANLILRLYEVTDGKITIDDQSVKEVMLDTLYQSIGMIPQDPSLFHRTLRENISYGRPEATEAEIIEAAKKACAHDFISRLKEGYETMVGERGVKLSGGQRQRIAIARAILKDAPILILDEATSQLDSLTESYIQDSLLQAMHGKTAIVIAHRLSTLLRMDRILVFNKGQIVQDGSHEDLLNQDGLYKQLWSSQVGGFLPDRYH
>NZ_CP008941.1|WP_038463809.1|724629_725493_-|NAD(P)H-hydrate-dehydratase
MIQPITYQFVQGCFPKRDSAAHKYKNGFVTTFVGSFQYPGAARLCCHAAAQAGAGGVYALLPESLWPLIGSIPAEVIPYMIKEHDGVLSIVDSVENFLVIKEKSSAILLGPGIGRHASLSNLLKSMLSMTELPCVIDGDGLSILGQLGENFLIQHSHGRWLLTPHQGEWQQLLKSFEYNPALSPQELAAKWGCTILLKGFPSHIYTVDGQIYVNTTGNPAATTAGCGDVLAGLIAGYLAQGLSPDQSACVGIYLAGQAADRLVATTRRHSVMATEILAELATNQLTK
>NZ_CP008941.1|WP_084675896.1|725531_726566_-|hypothetical-protein
MGLMKLIISAFLLLQWSWGQVNFTPSWVVDFRQRRPSDDYIMAPYDIIFDSTKGAVMPKMYRSPIFFKHASHQKIDLSGFNDLQISGSGQYSWLELKELVTHIHENHKIPYNKIYIFDFREEPHAFINDAAVSWFYGPLHIQQNKSPQEVIESELKRVNQVRAFPTVLINTIEKSADGMPSAKETGIYQVDIVMREQEAVKSLGVNYVRLPVTDHFRPEERDIDDFLAVIKELPAGSWLHFKCRGGKGRTTTFMTIFDIIQNPKVDFEEILARQKAIGGTDFATVRPKIGQAWKQRYANDRAKLIQVFYEYRHADDGWDKMKFSDWVKKHVQYLGYLGDRYDIE
>NZ_CP008941.1|WP_038463815.1|726750_726978_-|DUF1467-family-protein
MGFYTGFITFSVIWWVILFAVLPIGVRVAESTEIGFAASAPKDPMIGRKILIATLITLPLFFVAKWVINTNILGI
>NZ_CP008941.1|WP_038463818.1|727328_727517_-|hypothetical-protein
MKPLTVTFPLSLFKNSAALKIKVGVVEFYSFSAKLKAHHNKANSVLPPLKELEQTEELKLTL
>NZ_CP008941.1|WP_038463820.1|727789_728197_-|hypothetical-protein
MKNHNINSWLQHKRLALIGSDSFIPKDYGHLLWHWGVIDDKMRSFLKRYGRLRGLVLVSQGRVVTWTHGRHLYPGRSFRLPKEESMKIEGQWRKMVATLKLKDISLLDWLTQEPIDYNTTRQDIVKRFKSMSQSH
>NZ_CP008941.1|WP_038463823.1|728206_728662_-|helix-turn-helix-domain-containing-protein
MKKPWTAAEIECIKAAYAEGKREKVIAIELGRSESSVSKAITRYKIRSKRDYTVLKRQSHAGDSKAPRAIVAKTVRLDTTFNGNPCNWTSADEVLRYLGENHPHFLIRYRDCKPIYKFHNIEVALAKVLMEANKIRLSKGEPIFHLDEVTE
>NZ_CP008941.1|WP_051908511.1|729001_729718_+|ATP-binding-cassette-domain-containing-protein
MVIQRRQPIEIVRFDQVGLVYPGGHRVLHGLSQSFNVGSFTFLTGVSGAGKTSLLKLMYRGVRSTEGTVRVFSKDVNRITNTELPQYRQRIGIVFQDCKLFSHLNVIDNVALALKVSGTDVKTARTHAKELLQWVGLGQHLYEMPYTLSDGQKQRVAIARAVITRPLLLLADEPTGNLDHESGYRLLRLFEELNKIGTTVILATHNKALIAEFPYPEVELHQGRLISVSNQSTKVSHG
>NZ_CP008941.1|WP_038463826.1|729710_730592_+|FtsX-like-permease-family-protein
MANKVDIEEVPITKDPITRLVPWIIALLVFLLCLVLTGASSIGVAVQRWQIGMSHRINIEIPLQHEIDRDRITAAVAQYLTTTPGVSHIDIADKTKLYGLFGVTPQQAALYPDFPLPVMIEANLNSETGATVSEIITQLQQVSPGVRIEAYTQWHEMLLLLRKTLQIIGYIFIMLIAITVIIMISLITKAGLSAHQESISILRLIGASNGYIASKFQNHAFKLSVRGAIIGFGLALPISWVFNLSSVYLGVPDLLRPQMDPVLMLGMVIVPLFVVFLSVCVSRFAVLRTLSSD
>NZ_CP008941.1|WP_051908514.1|730596_731202_+|YdcF-family-protein
MQRFLLSMLTLSCVWFCGFLVFVYGIPQKPIDITTKTDAIVVWTGGPCRITTGVELLHHGLSDKLFVSGVEKGKPQLLSKQCNSYLSPETVEQLSNRISLGYAALSTMGNAIETSIWAERNQIQSVRLVTAAIHMPRSLVEFHLAMPHLKVIPHSVNVKQFDHRRWYASWPVFYKIAREYSKFLFIKIGIRPWWRDNILDE

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP008941_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008941_2

790249-790328

Orphan

Consensus_repeat	Method
GACCCAGCCTCTGCTGAATTGATTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008941_2

>merge|NZ_CP008941|2|790249-790328|CRISPRCasFinder
GACCCAGCCTCTGCTGAATTGATTCGTCAAATTGAAGCAGAAGATTCTTATATTGACTCAGCCTCTGCTGAATTGATTCG

>NZ_CP008941|2|2|790249-790328|CRISPRCasFinder
GACCCAGCCTCTGCTGAATTGATTCG	TCAAATTGAAGCAGAAGATTCTTATATT
GACTCAGCCTCTGCTGAATTGATTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008941.1\|WP_038463970.1\|783245_785042_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|227590
NZ_CP008941.1\|WP_038463988.1\|793796_794078_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275381
NZ_CP008941.1\|WP_038463972.1\|785168_786350_+\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|180775
NZ_CP008941.1\|WP_038463961.1\|780809_781061_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038467037.1\|801170_802010_-\|quercetin-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|224655
NZ_CP008941.1\|WP_051908528.1\|791239_792562_-\|citrate-(Si)-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP008941.1\|WP_038463994.1\|797267_797930_+\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
NZ_CP008941.1\|WP_038464003.1\|800259_801123_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_156956637.1\|792761_792914_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038463978.1\|787697_789596_+\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_CP008941.1\|WP_038463985.1\|793459_793678_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038463997.1\|798047_799778_+\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|235775
NZ_CP008941.1\|WP_038463965.1\|781141_782560_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038463967.1\|782850_783159_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_156956635.1\|777947_778892_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038463953.1\|779041_779758_-\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|234622
NZ_CP008941.1\|WP_038463975.1\|786524_787478_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038463956.1\|779754_780639_-\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP008941.1\|WP_051908530.1\|794581_796960_-\|SEL1-like-repeat-protein	unknown	unknown	gnl\|CDD\|223861
NZ_CP008941.1\|WP_156956636.1\|791041_791236_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP008941.1\|WP_038463970.1\|783245_785042_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|227590	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP008941.1\|WP_038463988.1\|793796_794078_+\|hypothetical-protein	gnl\|CDD\|275381	sd00034, LRR_AMN1, leucine-rich repeats, antagonist of mitotic exit network protein 1-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	2.09717e-05
NZ_CP008941.1\|WP_038463972.1\|785168_786350_+\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|180775	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase.	0
NZ_CP008941.1\|WP_038467037.1\|801170_802010_-\|quercetin-2,3-dioxygenase	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.21085e-74
NZ_CP008941.1\|WP_051908528.1\|791239_792562_-\|citrate-(Si)-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP008941.1\|WP_038463994.1\|797267_797930_+\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	2.17965e-75
NZ_CP008941.1\|WP_038463997.1\|798047_799778_+\|30S-ribosomal-protein-S1	gnl\|CDD\|235775	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.	0
NZ_CP008941.1\|WP_038463953.1\|779041_779758_-\|DNA-repair-protein-RecO	gnl\|CDD\|234622	PRK00085, recO, DNA repair protein RecO; Reviewed.	2.64571e-56
NZ_CP008941.1\|WP_038463978.1\|787697_789596_+\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_CP008941.1\|WP_051908530.1\|794581_796960_-\|SEL1-like-repeat-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	2.30485e-59
NZ_CP008941.1\|WP_038463956.1\|779754_780639_-\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	1.88569e-147

>NZ_CP008941.1|WP_038463978.1|787697_789596_+|acetate--CoA-ligase
MPIARAQTMSAYKEAYKNSIENPEEFWFEEGKRLRWSKPYSVARDCSYAPNNHHIQWFADGELNVSDNCLDRHLDNLAHKTAIIWEGDNPTESKSISFGELHQQVSKFGNVLKSLGIIKGDRVVLYLPMIIEAAIVMLACTRIGAVHSIVFGGFSPAALASRIQDSQAKLVITSNVSRRGGKAIPLKDNVDQALSLPGTDSVKNVITIQRTQEKTTLQEKDVWYHDLMAAAESDCPAEPMNAEDPLFILYTSGSTGKPKGVLHTTGGYLLHANMTFEHIFAIESDSVFWCTADIGWITGHSYVIYGVLSNGCTTVMFEGVPTYPQADRFWQVIDKYNVTHFYTAPTAIRSLIRAGDEHLRTSSRDSLKVLGSVGEPIDPASWRWFHKLVGKGRCPVVDTWWQTETGGILITPLAETTPLKPGSATFPFYGIEPAIVDSNGQEIENEGSGNLIIKQAWPGQARSLYKDHIRFLETYFSTYKESYYTGDGCYRDGDGYYWITGRVDDVINVSGHRIDTAEIEAVLNDHPSVVESAVVGFPHDIKGQGIYAYVILDPQVNTVVTASDLNTWVRQRIGVIASLDKVHFTANLPKTRSGKVMRRILRKLAGGETDNLGDISTLLDPTVIEDLKKEIQ
>NZ_CP008941.1|WP_038463975.1|786524_787478_+|hypothetical-protein
MINVKKSKNNFGKISSILATITVVSSFPSYGIDSPNSFLPSEKTDVNLLTSKVKTLIESTWEDGVTQDTIDHLYRIQSYVKNQLSQLSSPQQTDLKDLLEINFLLKVEDPSQPNKFESIFRDYLNNLFDLPLQPSSVTPPLPLSSPPKTKRPRASSIIFNEEKQKHQFPQMQSPFFNSLFASFNSSTPTVSSQIEQGAFTFITSPSQQEEITNYRSVKQTSYVDQENNIETFDYAKLETPVLFIKAANEKVYIAYDVSKSLSLIKLKLLKHYKITFLPNLEGKNVEFEPTEEMIDLGNGEKYPFAKIKFPPLSFNKN
>NZ_CP008941.1|WP_038463972.1|785168_786350_+|acetyl-CoA-C-acyltransferase
MSVREVVIVSAQRTPIGAFQGVFNDVKTTALGSAAIQGALNAIKLSADTIDEVYMGCVLPAGLGQAPARQAALQAGITKNTPCATINKVCGSGMKAIMLGVDQIRIGQTKTIVAGGMESMTNAPYLLSKARGGYRLGHGKIFDHMFLDGLEDAYTEGGVMGLFAEATADKYGFTREEQDAFAKESSLRAIKAIQSGVFNGEISSVTISSRKGDIVISEDETPSKVNPDKIPQLKPAFKKDGTVTAANSSSISDGAAAVVLMEKEHAEKSGHKILATVKGHATFAQEPEWFTTAPVGAIQKLCEQIGWSIEDVDFFEINEAFAVVTMATMKDLKIPHEKVNIYGGACALGHPIGASGARLVVTLIHALHTEGKKKGIASLCIGGGEAVALAVEI
>NZ_CP008941.1|WP_038463970.1|783245_785042_+|ABC-transporter-ATP-binding-protein/permease
MAGTPIPPSDNKFNFSYMTRLWPHLWATNASVKVRFGIALVLLIASKVLLLYVPLLYKAAVNALSPELGAVTVVPIFIILAYGSARLISQLFGEIRDAVFAEVTQAAIREIALIVFKHIHALSLRFHLERQTGGLSRVIERGTKAIETLLTFLTFNIIPTILEILLVAILFAYMYGISFASVIILTLGAYIIFTLMITEWRISYVRTMNETDNEATTKAVDSLLNYETVKYFNNEDHEAYRFGRALERYKIAAVKNRLGLSLLNSVQAFVITIGLVIIMLMAGFKVKDGSLTVGDFVALNAFVIQIYIPLNFLGFAYREIKIALVNMEHMFNLLDIPQEVKDMPNAPAANCQEGSIVFQNVSFHYDDRRSILNNISFEVPAGKTVAIVGSSGAGKSTISRLLFRFYDTTAGAILIDGQDIKTVMQDSLRQLIGIVPQDTVLFNDTIRYNIAYGRPSASEEEIIEAAQAAQIHDFILSLPDGYKSMVGERGLKLSGGEKQRVAIARTLLKQPKIFLFDEATSALDTRTEREIQKSLERLSKNHTTLIIAHRLSTVIQAHEILVLENGQIVERGSHKDLLTLSGIYTTMWERQSAQSPSA
>NZ_CP008941.1|WP_038463967.1|782850_783159_+|hypothetical-protein
MKKFILLWSLLTFFSANAEEADWEPDLLGRMYAQELLTLEEASAYHNQIQDFLRAAGEQFDPNLGLFPDEVVDRFWEIIEALENKIPQKHGEDLELAQKPSV
>NZ_CP008941.1|WP_038463965.1|781141_782560_-|hypothetical-protein
MKFINKVLIINSLIGPMHATALEDHNLGNYSLKKLSTSRENNFVPPEFRTEEETTSLIHALVQSEKEFWENSTQELLASNKRLAIIVSILDKPENRSDLSLRLSLFGSEDKKPECDAYTAYKNLAQTIKILANLEKSITDGWAKSNSLEEILLSLVATVKKEAKDHQFLRQLYTHSTNPRINKELKNNRYQIQDYKNLEVVTSGFAGILIKILQDHIKAINSKKAALQKKNENVISPKKQRAKKKSVSPLASQYEKISQQDIDALTVYTPESEGREELFDLILEPQDDAADTIAFPTVEDVKKGDGKLQCSEIHEGEEEGTEKASEDNVDEKYDLEPWKKYQNKSAKLTVEVLCPTVDGPQPQLAILSRLKDKHWTTIRNLLQLNLHTRQEQVSMESFIKVIKKMKGSVIRGSKNVHFAIPNIFSGKMVAVPMHTLHGDRATILPKNTYYWERAYLLLERAGFLKYLEHSKK
>NZ_CP008941.1|WP_038463961.1|780809_781061_+|hypothetical-protein
MKKLLLLCANFVFFSHGQANQTDILSDLAQQGQITPQEYNDYQNKIKNFTDLCNEKAYKGTSTFTSAEIDAFWNLVDELVAKN
>NZ_CP008941.1|WP_038463956.1|779754_780639_-|GTPase-Era
MTQFGFIAVLGEPNAGKSTLINQLVGQKVSIVSPKVQTTRQRILGIAMAGDAQLVLIDTPGIFAPKKRLDRAMVASAWDAGRDADQTILIVDASQKIQSRSQEILKGLEGCKVILVLNKVDAVDKARLLKLAETYHQYEQVTEIFMISALTGDGVPDLMAYLVSKAPAGPWMFPEDDITDMPQRLWASEITREQLYHQLHQELPYETFVETEAWEEFDNGSVKINQVIYVNRDGQKSIILGKRGAKIKEISQAAREELSQLLGRQVHLYLYVKVAENWSEKSSFYRNIGLDFNA
>NZ_CP008941.1|WP_038463953.1|779041_779758_-|DNA-repair-protein-RecO
MKWQEDGVILSLRQHGENSAVVSLLTRSHGRHAGIIRISSRNRPILQPGNTVQAQWSARLSEHLGAFQLELVHSPLARIMPDSLRLTAMVSLLTILDRLLAERHPYSLIYDMVVNLMQKLADPGSGWLKDYAIFELRLLEALGYGLDLSQCAATGRQDDLTYVSPKSGCAVSREAGLPYANKLFEIPKFIISGDEGIAEADDIAKSLKMSGYFLAKYFFNSILPDHRQRLTQLLDLSD
>NZ_CP008941.1|WP_156956635.1|777947_778892_-|hypothetical-protein
MHINYFTKIQIMIVMILSGAIEANACEAGSVASNSPSPPSAAISNMLRVKVDDKRVLNDPFNYITVFEVKKTEVLEFPQQEDANFDKGYGRKALSFRICYDPQQKVGPTEEIVTFGDEAMFDQLLCDLHNRVPEDVANERSPQKKRRLSYDFSNIDYYEAVIGTVERLTENEGQIPAPLINLLIESGIDKEKFVAGFSDSIKHTEKELKRKREEEEESDTEISYKFGNYISYLAGLGDFSSRCEVLVNGDEGVFTMELTLQTLDERVDASPLPKSVLAFHKKLKNWAIGKVFTLFNKKFQLMRKKGETHSGMFN
>NZ_CP008941.1|WP_156956636.1|791041_791236_-|hypothetical-protein
MAYTDYRPQPVASSIKRRGSVPSVWMIMRSRVNDNTPGYFYWFSRILVASTVCFCVIEAIDYFL
>NZ_CP008941.1|WP_051908528.1|791239_792562_-|citrate-(Si)-synthase
MEEPVTQAAQKYEPTVKVIYNGKTIELPVLSGSCGPNVIDIRSLYNETGLFTYDPGFTATASCESKITFIDGDEGILLYGGYPIQDLAEKSDFMEVSYLLLYGDLPTPQQKKEFIKNITMHTMVHEQIPSFYRGFRRDAHPMAIMVGVVGALSAFYHDSLDIHDPRQREIAAYRLVAKVPTLAAMAYKYSIGQPFVYPRNDLDYASNFLHMMFSVPTEPYEVNPILSEAMDKILILHADHEQNASTSTVRLAGSSAANPFACMAAGIAALWGPAHGGANEAALAMLQEIGSPARIKEFVNRAKDKNDPFRLMGFGHRVYKNYDPRATVMRETCHQVLKELNIHDDPLLDIAMELEQIALSDPYFIEKKLYPNVDFYSGIIFKAMGIPTSMFTVIFALARTVGWVAQWKEMICDPLQKIGRPRQLYTGVAQRPFVDITERR
>NZ_CP008941.1|WP_156956637.1|792761_792914_+|hypothetical-protein
MTTTDSVVPIRTSDALFCAAECILSRNFAVGERLLERVLTALPNEPTALH
>NZ_CP008941.1|WP_038463985.1|793459_793678_+|hypothetical-protein
MLKYLNAKKFKSFTFPRLIVAALGFIVNPLPLEAAEIAEKPVHAATSNTPEVGQFPQPQTLLTLPDEVLLKF
>NZ_CP008941.1|WP_038463988.1|793796_794078_+|hypothetical-protein
MPLSSGIKFKFTPSSAMLKAMVTQWTTLSRIDLSRTDVTDVSALGNVHTLNLQGCEGVTDVSALGNVHTLNLRGCRGVTDVSALGKVHNLTLY
>NZ_CP008941.1|WP_051908530.1|794581_796960_-|SEL1-like-repeat-protein
MQRLISMFLITTTLSFPPFIDTATAMDVPSFTAVTEEDLNASHTATPLLAIKKEGEPNALAFMDIEKKNSHPAGSLKRSIEQIKKDEKETILGQKNPVAKKQKISSSSDGLSESNICQDSISPELIQLKEKAGKNDPQAQFEMGQCYLFGKGVDKDLNQAVEWYRKAAENNYAAAQYNLGQCYLFGKGVDKDLNQAVEWYRKAAENNHAAAQYNLGQCYLFGKGVDKDLNQAVEWYRKAAEQNHAAAQYSLGWCYDHSIGVERDPREAVEWYRKAAEQNYAEAQYNLGICYAYGKGVEQDPKEAVEWYRKATEQNHAAAQYSLGWCYDHSKGVEQDLKEAVEWYRKAAEQNHAAAQYSLGWCYDHSIGVDKDLNQAFEWYRKAAEKNYAEAQYALGVCYEDGKGIDKDLNQAVEWYGKAAEQKHAEAQYALGVCYEDGKGVDKDLNQAFEWYEKAAEQDHAAAQYALGVCYEDGKGIDKDLNQAVEWYRKAAEQNYEDAQQYLNKILGPLQNGGTLDLNTREQVKNLKRLNNELIKENGFYAGLNKAGFKDTIDNHEMHALHNKMLGFGSLVLKIISALKQPGFMVRFTDDLSKFNYSTNNNSSSLRCYPQLRNLACFGEKNVKIGDLLYSMLYEEDASPHVSFSQIQKMLKDRGNIAVQALNNLKAEAEKVDTLLKAYTPLLANKETPESHQQEILELAQQYGIQKDTISTHLHNSQFQEENSKIINKKVIKLLQEKIFLEKGIKEQLSTTMFWEKQITDVIKLRVQLVEILVQSVPARNQYLKEKYPWLK
>NZ_CP008941.1|WP_038463994.1|797267_797930_+|(d)CMP-kinase
MDKDQKKVIIAIDGPSGAGKGTVAHYLANKFNLKILDTGLLYRVVAKMALQQKLGSDQLEKLIEITRNVTVEDVTQEGLRSEKVAAMASKIAIIPAIRTILNQVQRDFAVSDPGDHLGVILDGRDIGTVIYPDADCKIYLTADQEIRALRRMKQESNVCQLEIHQMMAERDKRDSSRTTAPLNAAKDAYIIDTTHLTIDEACKKAAYYVQNSCLPSAMTV
>NZ_CP008941.1|WP_038463997.1|798047_799778_+|30S-ribosomal-protein-S1
MSNISVAKTPAKESFADLLEESLRGRTSFEGSVVKGYVLSIDDDFVTVDVGLKSEGRIPLREFAGPGRAPEVKAGDFIDVYVERMEDKNGCAVLSVEKARREAAWGELEKASITGDLVNGVIFGKVKGGFAVDLEGAVAFLPGSQVDVRPIRDITPLMNIAQPFKILKMDKLRSNIVVSRRAVLEDNRSEQRAELVSNLSEGQVLEGIVKNITDYGAFIDLGGVDGLLHVTDISWRRINHPGDVLKVGEAIQVQVIRFNRDTQRISLGMKQLEADPWKGVEERYVPGSRHKGKITNIADYGAFVELEPAVEGLIYVTEMSWTKKNVHPSKILTQSQEVEVQVLEVDMTKRRISLGLKQCSENPWIRFAEQYPAGSILEGEIKNITEFGMFVGVDEEIDGMVHMTDVSWDNGEDSAQFKKGDVVKVKVLDVDPEKERISLGIKQLNNDPFATALEGIKKGAIVTCTITDVNDKGLEVSLESGLTGSIKKIDLSRERSEQRPDRFAVGEKVDAMVTSLDRSGRKVALSIKAREIDEEKKAMSEYGSADSGASLGDILGEAMNKAKTTPTKSKKAEAEA
>NZ_CP008941.1|WP_038464003.1|800259_801123_+|hypothetical-protein
MLKIFSLLIFCSHMPAYCYQHPDNSHELYNSIQDSNKISPELKIGLAETRFWHDLHLKYPNADDKIPELRDQADNLAQLTGVQLQKFYKGDQRDTRLRRFNKIYMNWINTNKETDPTLRQWYKFCIETSWACSNESASSCMDDMLASADHLMKEGFILGIIYLPAGNPDFDGIIGEAARVAGIATNVWLTGLSVRPDLMADDRKQTPQNFLWNTIHGHGLPYLVKHTTLTHLDYQQIIRINLLENPTNDVYFWHFNWLYEHKIDGPLPKGLDEEAYGQLIEKSISSI
>NZ_CP008941.1|WP_038467037.1|801170_802010_-|quercetin-2,3-dioxygenase
MIVQIKAAVAKHWVGDGFPVRTLFSYRSPVITVSPFLLLDYAGPEDFKPTDKIRGVDKHPHRGFETVTIVYSGQLEHRDNAGHTGKIGAGDVQWMTAGRGVLHEEWHGEEFSKAGGVFEVVQLWVNLPIKDKMTKPKYQEIIADRIPVLNGDGWYCRIIAGNYLGVQGAATTFSSINVWDMHSEAHTQQKIEIPEGYSTILLLRRGKIMVNDAATLEAGHITFFDTQGDAIEISTLDDAEFLLLSGEVIDEPIVGAGPFVMHSEEELKKAYADYREGRF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP008941_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008941_3

1122378-1122560

Orphan

Consensus_repeat	Method
GCAGAACCAGATTGGAGATGCTGGGGCGCACGTCCTAGCCAAGAATA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP008941_3

>merge|NZ_CP008941|3|1122378-1122560|PILER-CR
AGATTGGAGATGCTGGGGCGCACGTCCTAGCCAAGAATACTACCCTCACTTCCTTGAATTTGGAGGATAATCTGATTGGAGATGCTGGGGTGCAGGCGCTGGCCACCAATACTACTCTCATCTCTTTGAACCTCAGGCAGAACCAGATTGGGGATGCTGGGGCGCACGTCCTAGCCAAGAATA

>NZ_CP008941|3|1|1122378-1122560|PILER-CR
AGATTGGAGATGCTGGGGCGCACGTCCTAGCCAAGAATACTACCCTC	ACTTCCTTGAATTTGGAGGATAATC
TGATTGGAGATGCTGGGGTGCAGGCGCTGGCCACCAATACTACTCTC	ATCTCTTTGAACCTCAGGCAGAACCAGATTGGGGATGCTGGG
GCGCACGTCCTAGCCAAGAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008941.1\|WP_051908638.1\|1125984_1127307_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238064
NZ_CP008941.1\|WP_038464562.1\|1116678_1117143_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038464584.1\|1134306_1134699_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038464574.1\|1123280_1125761_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP008941.1\|WP_038464553.1\|1112394_1112673_-\|conjugal-transfer-protein-TraD	unknown	unknown	gnl\|CDD\|368890
NZ_CP008941.1\|WP_038464559.1\|1113167_1116662_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274289
NZ_CP008941.1\|WP_038464565.1\|1117297_1117840_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377323
NZ_CP008941.1\|WP_084676035.1\|1129029_1132161_-\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	unknown	unknown	gnl\|CDD\|129992
NZ_CP008941.1\|WP_075261616.1\|1108713_1109997_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP008941.1\|WP_038464568.1\|1118463_1120329_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038464571.1\|1120636_1121236_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038464556.1\|1112740_1112971_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_156956660.1\|1139868_1140027_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038462597.1\|1132574_1133672_+\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NZ_CP008941.1\|WP_051908635.1\|1110095_1111109_-\|response-regulator	unknown	unknown	gnl\|CDD\|381113
NZ_CP008941.1\|WP_084675925.1\|1136987_1139153_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214549
NZ_CP008941.1\|WP_038464578.1\|1128344_1128947_+\|resolvase	unknown	unknown	gnl\|CDD\|184041
NZ_CP008941.1\|WP_084675923.1\|1127547_1127958_-\|transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP008941.1\|WP_038464551.1\|1111937_1112174_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008941.1\|WP_038464577.1\|1127959_1128232_-\|DUF4158-domain-containing-protein	unknown	unknown	gnl\|CDD\|379339

Protein	Function_ID	Function_description	E-value
NZ_CP008941.1\|WP_051908638.1\|1125984_1127307_+\|hypothetical-protein	gnl\|CDD\|238064	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).	1.48752e-16
NZ_CP008941.1\|WP_038464574.1\|1123280_1125761_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	8.43724e-30
NZ_CP008941.1\|WP_051908635.1\|1110095_1111109_-\|response-regulator	gnl\|CDD\|381113	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains. This family is composed of mostly uncharacterized response regulators with similarity to the REC domains of response regulator components of two-component systems that regulates hydrogenase activity, including HupR and HoxA. HupR is part of the HupT/HupR system that controls the synthesis of the membrane-bound [NiFe]hydrogenase, HupSL, of the photosynthetic bacterium Rhodobacter capsulatus. It contains an N-terminal REC domain, a central sigma-54 interaction domain that lacks ATPase activity, and a C-terminal DNA-binding domain. Members of this family contain a REC domain and various output domains including the cyclase homology domain (CHD) and the c-di-GMP phosphodiesterase domains, HD-GYP and EAL. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	7.01186e-12
NZ_CP008941.1\|WP_038464559.1\|1113167_1116662_+\|AAA-family-ATPase	gnl\|CDD\|274289	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.	2.24372e-130
NZ_CP008941.1\|WP_038464565.1\|1117297_1117840_+\|hypothetical-protein	gnl\|CDD\|377323	pfam04352, ProQ, ProQ/FINO family. This family includes ProQ, which is required for full activation of the osmoprotectant transporter, ProP, in Escherichia coli. This family includes several bacterial fertility inhibition (FINO) proteins. The conjugative transfer of F-like plasmids is repressed by FinO, an RNA binding protein. FinO interacts with the F-plasmid encoded traJ mRNA and its antisense RNA, FinP, stabilizing FinP against endonucleolytic degradation and facilitating sense-antisense RNA recognition. ProQ operates as an RNA-chaperone, binding RNA and bringing about both RNA strand-exchange and RNA duplexing. This suggests that in fact it does not regulate ProP transcription but rather regulates ProP translation through activity as an RNA-binding protein.	3.54343e-19
NZ_CP008941.1\|WP_084676035.1\|1129029_1132161_-\|CusA/CzcA-family-heavy-metal-efflux-RND-transporter	gnl\|CDD\|129992	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family. This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP008941.1\|WP_075261616.1\|1108713_1109997_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.6197e-31
NZ_CP008941.1\|WP_038464553.1\|1112394_1112673_-\|conjugal-transfer-protein-TraD	gnl\|CDD\|368890	pfam06412, TraD, Conjugal transfer protein TraD. This family contains bacterial TraD conjugal transfer proteins. Mutations in the TraD gene result in loss of transfer.	1.37272e-07
NZ_CP008941.1\|WP_038462597.1\|1132574_1133672_+\|ISAs1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	2.71912e-27
NZ_CP008941.1\|WP_084675925.1\|1136987_1139153_-\|hypothetical-protein	gnl\|CDD\|214549	smart00191, Int_alpha, Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.	1.30747e-05
NZ_CP008941.1\|WP_038464578.1\|1128344_1128947_+\|resolvase	gnl\|CDD\|184041	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase.	3.5764e-52
NZ_CP008941.1\|WP_084675923.1\|1127547_1127958_-\|transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.3341e-20
NZ_CP008941.1\|WP_038464577.1\|1127959_1128232_-\|DUF4158-domain-containing-protein	gnl\|CDD\|379339	pfam13700, DUF4158, Domain of unknown function (DUF4158). The exact function of this domain is not clear, but it frequently occurs as an N-terminal region of transposase 3 or IS3 family of insertion elements.	8.40198e-08

>NZ_CP008941.1|WP_038464571.1|1120636_1121236_-|hypothetical-protein
MLLNLKYRICQKSGVHTALFLFLYAPWSIASSTEEDADLEQAMRASLQCQQQEEENLAKALALSSLNPEQEEQEILAAVADFQGKAIRQDLVLSQNQEYYAGLYQDEAKDLMPQLDMQILVIEQTLPELEAEYIRLSHDINRTDQSDRLKQHLSAMQIRMEELKEDKATTALKLELLRQQFNELSNLPESAKFMYPKTQ
>NZ_CP008941.1|WP_038464568.1|1118463_1120329_-|hypothetical-protein
MKISIKIFLLFFAATSLGSVAMELDESPFSKSNKRPYSSSINREDVDPTEEPQEHKRQRTLSYEIIDELEKKEQHGEEYRDKYKGSEKYKQIDEYRNNLDSLKKLLPEFRKLILGEDAETKWKDLQDFYQQLATKYFRNFLTGPASADFNSLDYLADEVRQRIFFYCSKQDLANLMLVSPETRNAVYSLEPFFQKVVKEVIKWGRYKDINEFFDDVHAGNFRAYTAMGIIHYNGPKGQGGIRNKWLDLALNVHDLSAVSFIFSNQIFKNSQKKEDSVDNLFKIIKNVYENPQVGQDYTLDRAIIRYLDERIELGQNRADLRGEILTAINLLMTSLSGSIEANFILARVFSNGLEFPRRKDLTSICLQAGIPSQDYLRQAFKLVKSLPSFERGVVCFEIGLWELVKLSKDIDKMYTRIPEVASSQFNDSIKVHWTSAIQAWTEAAAGNRQQAVSQLKDYLKVTTLFNLPTPALAFSVTPASSKLTFFSTTHRYQYRLDASIAFKFLSELYQEDKKMNDQLSPYDKDVSLLLTAARNLKLILKKMGPNVKNFPHEVTAVSNYYLNAIQESLKSCNEELKDNMTKKLNYTSQKNLPFDKKIIIYEYILEKLGLGEGPKGSVANS
>NZ_CP008941.1|WP_038464565.1|1117297_1117840_+|hypothetical-protein
MIHKKAKLSLNPQQHHQAQDKVAQLKTFFETGQQPTSPNLPQENKKTPKAKQQETPAKPKVDSKEKDQHLRLKAKKERDKNRQAAFDWLLRTYPQCFSEENPKPLKLKIEKDIFAELPENLPFSRLHIREALGFYTRWFKYKEVLAKSTHRYDLQGNTIEELLADHKAHAQQRNNLEKEL
>NZ_CP008941.1|WP_038464562.1|1116678_1117143_+|hypothetical-protein
MTVSPTSEAFKELTSTLYALKGLTQELEKERDVIVTSAGQMSSCTRQFQTSIQALKDLSPEVVLQLNTVIHQAVPLMAKQAAEETVRLFLEKTTDQMEAELKKVENQCLKVNQQLSKNLEKMSFLSRTSLILAFLSTLMGVLLEAALSITLCRP
>NZ_CP008941.1|WP_038464559.1|1113167_1116662_+|AAA-family-ATPase
MALYHAHIKVLSRSDRNTVAALAYRSGTQLTEERTGEGFNFRNKSVEHVELLLPETSPQWAKDLQNLIEKNREKGVQKLSNIVESAEKRIDAQVYKDFEFSLPAELTVEQNKALLREFIQDQFCKRGITVLANFHNDCDVETGQKKPHCHAILLTRELAPDGLSKQKNREWNQTSLLGEWREQLAAYTNFHLQLHGYQARVDHRSYAEQGIEIEPQPKLSRSVQEMEGRIGHNAQGLKPEQYTDKAKDYQHIKLKNLYRIMKNPEVVFDIIHKSQATFMEGDIDKVLARYIDDPEVFRACQAKLKTSAELRLLRETEQGAVFTTKSMIKRELSLIDLAQSLSQTEGNKVSDQSIQNHVALYDKKYEKSGGLSSDQKRALEHLVQDKKLVAIVGYAGTGKSSILSCAQDIWQENGYAVYGLAPTGKAAQNLQNDGISSITLHKFLRQYHQGRNQFKSKSVLILDEAGMVDITRFEELFDASQKLGVKLVTVGDGKQLQPIEAGAAFRLVTKETGVATLETVIRQKQAWMKEATRNFGRGDTEKAIGSYLEKGRVILIDESIPDIQQLVAIKDYAGLVEAFNIAVRSQRLAGWTFRSDIELTPSERQIGGQKIGPWKGVEKEAGEAIANNIEHCRPHILAYKTDPYRIAESLTSDLDPAQQKLYAARMVHGWNIDSRGMQAWEFTCNPRQATMEALIKDWYQSIQAEPHKNHVLMAYTLNETEMLNKQARALRLQDGAIDKQSFTHQITRIDTDDFGDEVRTHKQRQFSKGDRLLFMKNDHGLGVRNGMVGTIEEINKTTLKVRLDAKEGEEGKIVSFASKLYPYVDLGWAINLNKQQGATNHKSFILASNHFHSNLTYVALTRHTEEASIYGTSQEFWTESVFAKQLAKGQEKLSSLDYIDSDQALKLARQESSIITEALEGVSNQLKAIHYTAKRSFTRWLGKEPTFEKIKVRETLTEAQRAHRLQDDSQIPLNSSLGTSEPPSSEPALSWKEMVADLEKKDMEKRILKSTGQTMEEYRALKNELYGISSHQNTSSPGPSWRDVLDQLVQPQRSISLSDQEATISLGGNSSEKVLDKMDYRPQFEKDVHNFTDRYNVYKKAESEGHTTEQDTLTLKKEAMALSKNENAMWYLEVRNPEMGQEIQRLAKDYNRHQALNRDSGLSR
>NZ_CP008941.1|WP_038464556.1|1112740_1112971_-|hypothetical-protein
MKKIDTLSKKLQDLQAEQQKLQGKIAEQLFAEIQKILGEDFSPSLALTLINQGWNHSGKSKEEWQKLSTSFQSAKP
>NZ_CP008941.1|WP_038464553.1|1112394_1112673_-|conjugal-transfer-protein-TraD
MKNRSGLAAHGFRKARTRTLIQLGGLIEKAGLFEVIGLIPGSDLQKDPLMQPLALSLLGAFLEIKQELQSDQISLEMWKLKAQEFLNKTQSY
>NZ_CP008941.1|WP_038464551.1|1111937_1112174_-|hypothetical-protein
MTGIKFSLRLVEKILLLYPDIRSELALEGIDEYYVQEEICDMLAHFFLGSFWPREKDENDLDTFLEASKYQVHKMDLK
>NZ_CP008941.1|WP_051908635.1|1110095_1111109_-|response-regulator
MNSLLCCYFPTKVIFVDDSSSILRSLAPILDHNIATYGFFDNPYKALEFVNSFQGIDFLPSAFPSREQKSDEIYKAIFSPQRYEEVSTVIVDYEMPSMKGLEFCEKLQNPYIRKILYTGVADEKVAIEAFNKGLIDGYIRKQDESDDPSLILNNFIRQSQLKYFKTLTDVSMEPILKNKKSIEYDDYRDAPVYDPTFNKYFNELLEKNNISEYYFNESINGFIFLTPKGKLSALFTVSEEIFEGLHWQFIGDLEKEAATNKQISSSFIKELEENRKLLCFPFYGNDQHPLPEEWEKYAYPLEILQGENIYYIAYARDIDYIDPVEIYSFEKYQRKKK
>NZ_CP008941.1|WP_075261616.1|1108713_1109997_+|HAMP-domain-containing-histidine-kinase
MREKFLSFLKNRLTATKEIDQNLTIFGIFLIIAYPGFYLINSLFVTPEGYENLSLRISIGLLGGILCLRRFWAEQFKKLVPIYMYLLLIYALPFFFFFMLFHNPTSNLWQLNTLVGLFLLFLFVSWVDAIILTLVGYAAAYYTSFLVFRDAQLPPDFFKLLIIYISPLVYISLFSNQKEYIQKEKQKSLRMQAGAIAHEMRTPLAAIRHMATGLKMHLPTLITAQQNLQEKDESIPYINDAILEPLKLIPTELERVSRSAFTVIDTLLLNLQDAPSKIVLEKCSILDCVETSLQAYSLTDEEKDLILLEIVENFELQTNPHLLKHVFFNLLKNSLHYVKAAGKGRIFIWTEKGEKFNRLHFKDTGKGIPPSILPYIFNQFYSRTDHGTGVGLAFCKMVLQKSGGDITCESVEGEFTHFTLSFPVVNE
>NZ_CP008941.1|WP_038464574.1|1123280_1125761_+|sel1-repeat-family-protein
MSLLQSYQTSLLKPRKTRRRKLEFFVSLINKAPRDTALRKKTITPSQRPNRLLDSSQAKIKQLEKEKAQVEENLSSVMLANEHLLERQSTLASSYQSVFELLQEMPQQESPLVQMALGLFYKLELVPAPHPHLALEWFGKALGQGESRALDFIREDADKGEKEAQYLVARAYEQGQGIPRDLRQAATWYNKAAEQQHPLARQRLAALQSVELEIAAQEGDRQAQYELAQAYYYGNGLPLNIDEGINWFKRAAENHHAPAQLFLARLYEKGEHVVQDSTQACEWYDKALQQGEEKALIGLKALAQNGSIEACYALGQAFEKGQGVAQDLLQARQWYEGATLQNHAPSLYALGALTEDGRDQSFNKAEEILALYQKAYTYYDQAQHLSHPQATFALWRVAQTRDSLKDIKTPELRRNLLLKKLQTALPASLSPDVLYKVAYLAEIIRLGFQEGPQEALFQALYDLGHFPRHSYQSRAVLDMLIHLINSEEFNADALDEQEDNFRLTALGRICRGIHLIKEPSSLIAPDQLPPRLRVASDGIRDVRVEVFNCLFKQDQATSHWPAFEQSIHRLLGYFDQGVIAGKITAEMLYDEEFDEHGTRKALEDLLRGGKVGRPSARFANRLIQIEPLILQLDEGTRFAQLSSWALAGLHCSTRAEKETYDFYVRYMSEGQNLDREELSLEMRIALSLADLRKQLISRLVPMDEVERLHQVAYLEKKAGPLLAVVGDAEAFQDRYEIIVKTVYKSLSPEDILKHVQAHYTVDSIANFLAETINRGTRLSYTHLAHAFEERKSGISLAEFYDEEITTFTPQGAKALLYSTGYFESRF
>NZ_CP008941.1|WP_051908638.1|1125984_1127307_+|hypothetical-protein
MKQRQNNLLPFALSLLLGTVGYKTSQAMENPSSIDLENITSTSLILEGKQIGDAGAQTLAKNTTLTSLDLRNNGIGDAGAQALAKNTTLSSLNLRQNWMGTAGVKALAQNTTLTSLDLRNNRVGDSGAQALAKNTTLTSLNLECCWIGVEGVAALLNALRTQTNLTELSLKWPNSNNEREVEFLLNRNKELASNRTHQVIPTVPAPTPQPMQGTFPQNVIAPVLPDEPSKTKEDKGKEKLGEFIKSLINKDLRDTALRKKTITPSQRPNRLLDSSQAKIKQLEKEKAQVEENLSSVMLANEHLLERQSTLASSYQSVFELLQEMPQQASPLVQMALGLSYKLELVPDPHLALQWFGKALGQGESRALDFIREDADKGEKEAQYLVARAYEQGQGIPRDLRQAATWYNKAAEQQHPLARQRLAALQSVELEIAAQEGDETI
>NZ_CP008941.1|WP_084675923.1|1127547_1127958_-|transposase
MEGLLEKLLQIDPVLLQRYQTLQEIAGVGPIVATTLLGLLPELGTLNRRQIANLAGLAPHPCESGKTVGYRRTKGGRVDVKRILFMAAMTARRTDSPLKAFYENLIKRGKKKMVALTALMRKIVIIANAKLKSLQT
>NZ_CP008941.1|WP_038464577.1|1127959_1128232_-|DUF4158-domain-containing-protein
MESRYAITRQLLNEVGPLSKEEQEWVFQCRRDPNRLGFCYQLIFVKVFNRFPQQEPFEIIPEILNFVSSQINIKSSTGLAVMLVLYSTTH
>NZ_CP008941.1|WP_038464578.1|1128344_1128947_+|resolvase
MANFAYLRVSTDSQDNQNQKLSVLEYCNANQLGLLHLIEDTVSSKVPWKERKIGEILHKANKGDVIVVSEVSRLGRSALQVLEILEFAANHEISVHLAKNRFIMDGSMQATITATILGLAAQIEREFISLRTKEALAKCKQDGKNLGRPKGPAQALKLDQHYDEIVSYLRKGISKRSIAKLIECSPTSLYNWLKRRKIKD
>NZ_CP008941.1|WP_084676035.1|1129029_1132161_-|CusA/CzcA-family-heavy-metal-efflux-RND-transporter
MLERIVYFSIRQRWMIMIMVLGLGILGAYNFQRLAIDAVPDITNVQVQINTEAPGFSPLESEQRITYPIETAIAGLPGLSYTRSVSRYGLSQVTVIFKDGTDIYFARQLVNERLQEAKSQLPDGLEPTMGPIATGLGEIFMFIVEAKSGAKKQDGTPWTLSDLREIQDWVVRPQLRNLKGVTEVNTIGGFAKQFHVTPSPDKLISLGLTLADVMIALTKNNNNIGAGYVEKHGEQYLIRVPGQVKDLKEIGDIIIARRDGLPLRIKDVAEVSLGKELRTGAATQNGQEVVLGTVFMLIGENSREVVQTVGRKLEEVNRGLPEGVTVKAVYDRSMLVNRTIATVEKNLLEGALLVIVILFLLLGNIRTALITAAVIPLAMLLTITGMVQNKISGNLMSLGALDFGLIVDGAVIIIENCLRRFGLEQRRLGRILSREERFSLAASATAEVIRPSLFGIMIITVVYLPIFTLTGVEGKMFHPMAFTVVMALLAALVLSITFIPAAIALFVTGKVEEKENVIIRKAHKWYEPILAYSLKTPRKIITGAVLLVLFSIFLASRMGSEFIPNLDEGDIALHALRIPGTSLTQAISMQTALEARIKEFPEVKTVFAKMGTAEVATDPMPPSVADTIVIIKERKDWPDPRKPKAQLVKEIEAAVLKIPGNNYEFTQPIQMRFNELISGVRSDLAVKVYGDDLEELQKVGKKIETLLKTIPGSADAKMEQITGLPVLSILPNRAALSLYGLNVADMQEILEIGLGGKVAGRIFEGDRRFDLIVRLPEELRTNINAMKSLPIPLAQGLDKENKQILRYVPLSEVATLEIAPGPNQISRENGKRRVVITSNVRGRDLGSFVQDVQEQVTEKIEVPSGYWVEYGGTFEQLISASKRLQIVVPVTLLLIFLLLFSLFSSIRDALIIFSGVPLALTGGIIALWLRSIPLSISAGVGFIALSGVAVLNGVVMVSFIRQLLNEKKPLEQAITEGALTRLRPVLMTALVASLGFVPMAFNVGAGSEVQRPLATVVIGGIISSTALTLLVLPALYRLFHRKV
>NZ_CP008941.1|WP_038462597.1|1132574_1133672_+|ISAs1-family-transposase
MDIIRFIEEVEDPRDSWKIQHNLSSILFTTLCAVLSGAQTWDDVALFGQTKQAWLSKYISFDNGIPSAWTFRRIFTLLRPECLEILLRTHADQIMGAHNANHIAIDGKTLRSSKRKDLNCLHSLSAWCHEKGLVLAEKDVDKKSNEITAIPLLLNTLDLKGATVSIDAAGCQKTIASQIQEQKGDYVLALKKNHPKLYQTIEQYIADQGPSCDTKLHDGFDEGHGRLVRRRYFGYDISHLEQAKEWSGLKSVIAVETIFSHPNSSTHVTAQWRYYLSSHPANHQQLPDYIRNHWSVENKLHWVLDVHLKEDEDRKAERQSAKAFAILKRMSLNIIRSKDGHTKGSLRGKLKKASWDTAYLLSLLV
>NZ_CP008941.1|WP_038464584.1|1134306_1134699_-|hypothetical-protein
MVYYSSQLAARFTFFANNLTSTLKSSSSLKMLGSFMLLQVFSSGLVFAMEEKQEFQQFQDLYIQHRQLHQQLERKNQTGTSVEIDQLHQQLHEQQKSNKEADKLTTIGRFHLELHEQQRKNDINSQSTYH
>NZ_CP008941.1|WP_084675925.1|1136987_1139153_-|hypothetical-protein
MKGKTMKSYPPKLALLSVSTVALLALHSASASSFEFENIDLANLEYSNQGFKISGGAAWDYSGNSVSAAGDMNGDGIPDILIGSPNHRGSSYVIYGKAGGYTGTIDLASLNPTQGFRIDGGLGDQKFGASVSSAGDVNGDGLPDILIGAWLTNPFPDRYGAGVSYVIYGKAGGYKAPLELASLNPTQGFRIIGAAENDLSGVSVSAAGDMNGDGLQDILIGASHAASFGRRSAGASYVIYGKAGGYTESLDLARLNSTQGFRIGGAVAGDYSGGSVSAAGDVNGDGFQDILIGAMGVRKWTGASYVIYGKAGGYTDSLDLASLNSTQGFRIIGAVAGDYSGGSVSAAGDVNGDGISDILIGTDQASPYGRYGAGSSYVIYGKVGGYTDSLDLASLNPTQGFRIDGAVKLDASGVSVSGAGDVNGDGFQDILIGAYKASHFERGMAGTSYVIYGKAGGYTDSIDLASLNPTQGFRIDGAATMDNCGRSVSAAGDVNGDGFPDILIGAYQASPYGRLWAGASYVIYGRGRIKPSPRVSPSASFSASPIASPLVSPSATPSASPSASPSASPSAFPSHSSASTHNIPWYSPVKWLSSLKDWWYTPESIDTTLPYVKEMLEIKTKIKQASELSSDRWFQFNLEDLAEDIDLILKNPQALQKDIIKTLQKRLRGIEKDFLYDDTPHHKGFFVKAVQLPALKGPMVILAPNLVSLSYPGSAPLMLAK
>NZ_CP008941.1|WP_156956660.1|1139868_1140027_+|hypothetical-protein
MTALGEKTSPEQIQDLTKTLFLINGLHSKLSQEIKLIATTASQMTVATNGFQ

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP008941_3	3.1\|1122425\|25\|NZ_CP008941\|PILER-CR	1122425-1122449	25	NZ_CP008941.1	258446-258470	0	1.0
NZ_CP008941_3	3.1\|1122425\|25\|NZ_CP008941\|PILER-CR	1122425-1122449	25	NZ_CP008941.1	1122561-1122585	0	1.0
NZ_CP008941_3	3.1\|1122425\|25\|NZ_CP008941\|PILER-CR	1122425-1122449	25	NZ_CP008941.1	1122888-1122912	1	0.96
NZ_CP008941_3	3.1\|1122425\|25\|NZ_CP008941\|PILER-CR	1122425-1122449	25	NZ_CP008941.1	1122960-1122984	2	0.92

1. spacer 3.1|1122425|25|NZ_CP008941|PILER-CR matches to position: 258446-258470, mismatch: 0, identity: 1.0

ctaccctcacttccttgaatttgga	CRISPR spacer
ctaccctcacttccttgaatttgga	Protospacer
*************************

2. spacer 3.1|1122425|25|NZ_CP008941|PILER-CR matches to position: 1122561-1122585, mismatch: 0, identity: 1.0

ctaccctcacttccttgaatttgga	CRISPR spacer
ctaccctcacttccttgaatttgga	Protospacer
*************************

3. spacer 3.1|1122425|25|NZ_CP008941|PILER-CR matches to position: 1122888-1122912, mismatch: 1, identity: 0.96

ctaccctcacttccttgaatttgga	CRISPR spacer
ctaccctcacttccttgaacttgga	Protospacer
*******************.*****

4. spacer 3.1|1122425|25|NZ_CP008941|PILER-CR matches to position: 1122960-1122984, mismatch: 2, identity: 0.92

ctaccctcacttccttgaatttgga	CRISPR spacer
ctaccctcacttccttggatctgga	Protospacer
*****************.**.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP008941_2	2.1\|790275\|28\|NZ_CP008941\|CRISPRCasFinder	790275-790302	28	MN693984	Marine virus AFVG_250M279, complete genome	17517-17544	6	0.786
NZ_CP008941_2	2.1\|790275\|28\|NZ_CP008941\|CRISPRCasFinder	790275-790302	28	CP009912	Borreliella chilensis strain VA1 plasmid lp54, complete sequence	1984-2011	6	0.786

1. spacer 2.1|790275|28|NZ_CP008941|CRISPRCasFinder matches to MN693984 (Marine virus AFVG_250M279, complete genome) position: , mismatch: 6, identity: 0.786

tcaaattgaagcagaagattcttatatt	CRISPR spacer
caaaattgaagaagaagatttttataaa	Protospacer
. ********* ********.*****

2. spacer 2.1|790275|28|NZ_CP008941|CRISPRCasFinder matches to CP009912 (Borreliella chilensis strain VA1 plasmid lp54, complete sequence) position: , mismatch: 6, identity: 0.786

tcaaattgaagcagaagattcttatatt	CRISPR spacer
tgctattgaagaagaagattcttattct	Protospacer
*   ******* ************* .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

126799 : 185420

Vibrio_phage(14.29%)

transposase,tRNA,plate,integrase

attL 157621:157636|attR 182951:182966

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038462777.1\|126799_127297_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_038462779.1\|127296_127908_-	hypothetical protein	NA	NA	NA	NA
WP_038462781.1\|128044_128614_-	hypothetical protein	NA	NA	NA	NA
WP_051908307.1\|128696_130163_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_038462783.1\|130185_130719_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_051908309.1\|130964_131732_+	NAD kinase	NA	NA	NA	NA
WP_051908311.1\|131728_132559_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_051908313.1\|132721_133207_+	DUF4167 domain-containing protein	NA	NA	NA	NA
WP_038462784.1\|133504_136069_+	ATP-dependent chaperone ClpB	A0A2I7SAX5	Vibrio_phage	5.4e-125	37.9
WP_084675811.1\|136259_136796_+	DUF2628 domain-containing protein	NA	NA	NA	NA
WP_038462790.1\|136896_137430_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	6.5e-41	48.0
WP_038462793.1\|137673_140325_-	DNA mismatch repair protein MutS	F2QAF9	Pyramimonas_orientalis_virus	9.9e-05	28.0
WP_038462796.1\|140536_140797_+	hypothetical protein	NA	NA	NA	NA
WP_038462800.1\|140940_141942_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_038462802.1\|142325_143681_+	MFS transporter	NA	NA	NA	NA
WP_051908315.1\|143731_144313_+	DUF1013 domain-containing protein	NA	NA	NA	NA
WP_038462805.1\|144516_145914_+	2-nitropropane dioxygenase	NA	NA	NA	NA
WP_038462807.1\|145914_146850_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	1.9e-35	34.6
WP_038462809.1\|146851_149701_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.7
WP_051908317.1\|150423_150678_+	hypothetical protein	NA	NA	NA	NA
WP_051908319.1\|150728_151589_+	transporter	NA	NA	NA	NA
WP_038462810.1\|152121_152715_-	DUF2497 domain-containing protein	NA	NA	NA	NA
WP_038462812.1\|152787_154305_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_038462814.1\|154605_154875_-	hypothetical protein	NA	NA	NA	NA
WP_156956594.1\|154905_155064_-	hypothetical protein	NA	NA	NA	NA
WP_038462817.1\|155127_155448_-	sulfurtransferase	NA	NA	NA	NA
WP_156956595.1\|155633_155777_-	hypothetical protein	NA	NA	NA	NA
WP_156956596.1\|155948_156545_-	hypothetical protein	NA	NA	NA	NA
WP_038462820.1\|157391_158663_-	DUF21 domain-containing protein	NA	NA	NA	NA
157621:157636	attL	NA	NA	NA	NA
WP_038462822.1\|158666_158930_-	hypothetical protein	NA	NA	NA	NA
WP_051908321.1\|159259_160327_-	3-dehydroquinate synthase	NA	NA	NA	NA
WP_038462827.1\|160320_162114_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_038462829.1\|162311_162911_+	sel1 repeat family protein	NA	NA	NA	NA
WP_038462832.1\|163382_163811_+	hypothetical protein	NA	NA	NA	NA
WP_156956597.1\|164380_164668_+	hypothetical protein	NA	NA	NA	NA
WP_038462836.1\|164717_165173_+	DUF3857 domain-containing protein	NA	NA	NA	NA
WP_084675812.1\|165548_165686_-	hypothetical protein	NA	NA	NA	NA
WP_038462839.1\|166028_166208_-	hypothetical protein	NA	NA	NA	NA
WP_038462841.1\|167430_168594_+	hypothetical protein	NA	NA	NA	NA
WP_038462844.1\|168674_169286_+	hypothetical protein	NA	NA	NA	NA
WP_038462846.1\|169529_171551_+	hypothetical protein	NA	NA	NA	NA
WP_038462849.1\|171972_174747_+	hypothetical protein	NA	NA	NA	NA
WP_084676030.1\|174984_175164_-\|transposase	transposase	NA	NA	NA	NA
WP_084675814.1\|175185_175593_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_156956598.1\|175762_175954_-\|transposase	transposase	NA	NA	NA	NA
WP_038462851.1\|177060_178011_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	5.8e-40	38.8
WP_051908326.1\|178298_180038_+	fatty acyl-AMP ligase	NA	NA	NA	NA
WP_038462853.1\|180078_180369_+	hypothetical protein	NA	NA	NA	NA
WP_038462856.1\|180602_181976_+	hypothetical protein	NA	NA	NA	NA
WP_038462859.1\|182157_183678_-	aminotransferase class V-fold PLP-dependent enzyme	M1HWX9	Paramecium_bursaria_Chlorella_virus	2.7e-15	28.4
182951:182966	attR	NA	NA	NA	NA
WP_051908328.1\|185207_185420_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

193505 : 282778

Escherichia_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038462873.1\|193505_194474_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.9e-46	34.1
WP_156956756.1\|194508_194874_+	hypothetical protein	W6CWV1	Ralstonia_phage	2.2e-08	47.3
WP_038462876.1\|194905_195610_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	7.6e-37	41.1
WP_038466789.1\|195819_196770_+	hypothetical protein	NA	NA	NA	NA
WP_051908337.1\|196791_199758_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	9.5e-89	32.8
WP_075261536.1\|199809_200397_-	hypothetical protein	A4PE56	Ralstonia_virus	4.0e-07	27.7
WP_084675818.1\|201308_202310_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_038462882.1\|202939_203944_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_051908339.1\|204158_206078_-	YncE family protein	NA	NA	NA	NA
WP_038462884.1\|206074_209362_-	hypothetical protein	NA	NA	NA	NA
WP_038462887.1\|209415_209868_-	hypothetical protein	NA	NA	NA	NA
WP_038462889.1\|209886_212283_-	hypothetical protein	NA	NA	NA	NA
WP_051908342.1\|212303_215408_-	hypothetical protein	NA	NA	NA	NA
WP_038462892.1\|215425_216691_-	hypothetical protein	NA	NA	NA	NA
WP_038462895.1\|216709_218020_-	hypothetical protein	NA	NA	NA	NA
WP_038462898.1\|218038_218566_-	hypothetical protein	NA	NA	NA	NA
WP_038462900.1\|219054_219354_-	hypothetical protein	NA	NA	NA	NA
WP_084675820.1\|219589_219763_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038462876.1\|219864_220569_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	7.6e-37	41.1
WP_051908345.1\|220615_221005_-\|transposase	DDE transposase	A0A1V0E8E1	Vibrio_phage	1.9e-13	39.6
WP_051908347.1\|221642_223067_+	hypothetical protein	NA	NA	NA	NA
WP_084675822.1\|222997_225625_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	2.1e-87	34.3
WP_038462876.1\|226027_226732_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	7.6e-37	41.1
WP_156956600.1\|226733_227045_+	hypothetical protein	NA	NA	NA	NA
WP_051908351.1\|227208_228588_+	PfaD family polyunsaturated fatty acid/polyketide biosynthesis protein	NA	NA	NA	NA
WP_156956601.1\|228674_228830_+	hypothetical protein	NA	NA	NA	NA
WP_038462904.1\|228886_229597_+\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	3.4e-29	37.0
WP_051908353.1\|229664_230927_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.7e-95	44.0
WP_084675826.1\|231006_231261_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_084675828.1\|231800_238133_-	SDR family NAD(P)-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	1.5e-38	31.5
WP_038462908.1\|238240_238501_-	hypothetical protein	NA	NA	NA	NA
WP_051908356.1\|238520_242108_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	5.4e-46	34.2
WP_051908358.1\|242168_245180_-	FkbM family methyltransferase	NA	NA	NA	NA
WP_038462910.1\|245365_245665_-	hypothetical protein	A0A2P1JQX9	Mycobacterium_phage	8.5e-14	46.0
WP_038462904.1\|245747_246458_-\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	3.4e-29	37.0
WP_038462912.1\|246863_248072_+	patatin-like phospholipase family protein	A0A1B2LRS3	Wolbachia_phage	2.2e-20	28.3
WP_075261538.1\|248077_252709_+	hypothetical protein	NA	NA	NA	NA
WP_038462914.1\|253009_253723_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.1e-83	64.4
WP_051908360.1\|253927_254758_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_038462917.1\|259755_260574_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_038462882.1\|260760_261765_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_051908365.1\|262086_262800_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-49	51.2
WP_038462921.1\|263167_265252_+	hypothetical protein	NA	NA	NA	NA
WP_038462925.1\|266021_269666_+	sel1 repeat family protein	NA	NA	NA	NA
WP_051908367.1\|269815_275719_+	hypothetical protein	NA	NA	NA	NA
WP_038462927.1\|275676_278697_+	hypothetical protein	NA	NA	NA	NA
WP_038462929.1\|279027_279609_-	recombinase family protein	A0A219Y912	Aeromonas_phage	2.6e-22	38.3
WP_038462931.1\|279760_280408_+	DUF4158 domain-containing protein	NA	NA	NA	NA
WP_156956602.1\|280438_282778_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.6e-43	24.0

DBSCAN-SWA_3

292019 : 363921

Streptococcus_phage(46.15%)

protease,transposase,integrase

attL 354756:354771|attR 355503:355518

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038462951.1\|292019_292697_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.3e-38	42.4
WP_051908376.1\|293140_295555_+	response regulator	A0A1V0SGX0	Hokovirus	9.5e-55	32.0
WP_038466839.1\|296781_299310_-	magnesium-translocating P-type ATPase	M1HX51	Paramecium_bursaria_Chlorella_virus	1.5e-39	25.1
WP_038462904.1\|299600_300311_+\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	3.4e-29	37.0
WP_038462957.1\|300797_301259_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_038462959.1\|301451_304433_+	AAA family ATPase	V5UQN3	Mycobacterium_phage	2.8e-08	22.4
WP_038462963.1\|304541_305303_+	hypothetical protein	NA	NA	NA	NA
WP_038462965.1\|305278_306160_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_038462967.1\|306191_307874_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_038462969.1\|307934_308261_+	hypothetical protein	NA	NA	NA	NA
WP_038462971.1\|308265_310983_-	conjugal transfer protein TraG	NA	NA	NA	NA
WP_038462973.1\|310995_312405_-	hypothetical protein	NA	NA	NA	NA
WP_038462975.1\|312443_312665_+	hypothetical protein	NA	NA	NA	NA
WP_038462977.1\|312651_312936_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5SB46	Streptococcus_phage	4.7e-14	37.6
WP_038462979.1\|312944_313685_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_084675830.1\|313681_315187_-	conjugal transfer protein TraN	NA	NA	NA	NA
WP_051908380.1\|315225_315771_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_051908383.1\|315755_316760_-	conjugal transfer pilus assembly protein TraU	NA	NA	NA	NA
WP_075261541.1\|316752_317358_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_038462904.1\|317417_318128_-\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	3.4e-29	37.0
WP_156956757.1\|318184_318466_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038462986.1\|319505_320216_+\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	3.4e-29	37.0
WP_038462991.1\|321123_321450_+	hypothetical protein	NA	NA	NA	NA
WP_156956603.1\|321424_321991_+	hypothetical protein	NA	NA	NA	NA
WP_038462998.1\|322466_323732_+	hypothetical protein	NA	NA	NA	NA
WP_156956604.1\|323737_325468_+	hypothetical protein	NA	NA	NA	NA
WP_038463002.1\|325527_326049_+	hypothetical protein	NA	NA	NA	NA
WP_156956605.1\|326083_326257_+	hypothetical protein	NA	NA	NA	NA
WP_051908881.1\|326418_326709_-	hypothetical protein	NA	NA	NA	NA
WP_038463004.1\|326798_327041_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_038463006.1\|327494_328064_+	recombinase family protein	A0A0C4UR34	Shigella_phage	3.7e-42	50.5
WP_038463009.1\|328253_328442_+	hypothetical protein	NA	NA	NA	NA
WP_038463011.1\|328490_329759_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_038463013.1\|330222_330930_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_038463016.1\|331162_332566_-	hypothetical protein	NA	NA	NA	NA
WP_038463018.1\|332661_336279_-	hypothetical protein	NA	NA	NA	NA
WP_038463020.1\|336316_338878_-	hypothetical protein	NA	NA	NA	NA
WP_038463022.1\|338879_339791_-	hypothetical protein	NA	NA	NA	NA
WP_038463024.1\|339790_341185_-	hypothetical protein	NA	NA	NA	NA
WP_156956758.1\|343600_343687_-	CxxxxCH/CxxCH domain-containing protein	NA	NA	NA	NA
WP_038463029.1\|345440_346880_-	hypothetical protein	NA	NA	NA	NA
WP_075261542.1\|348150_348645_-	hypothetical protein	NA	NA	NA	NA
WP_038463037.1\|348915_351735_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	1.6e-122	33.5
WP_051908385.1\|352308_352938_+	HdeD family acid-resistance protein	NA	NA	NA	NA
WP_038463039.1\|352975_353938_+	YfdX family protein	NA	NA	NA	NA
WP_038463041.1\|354185_354734_+	DUF1269 domain-containing protein	NA	NA	NA	NA
354756:354771	attL	NA	NA	NA	NA
WP_156956606.1\|354828_355065_+	hypothetical protein	NA	NA	NA	NA
WP_084675832.1\|355003_355468_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_051908387.1\|355781_356936_+	hypothetical protein	A0A1B2LRS3	Wolbachia_phage	1.5e-34	32.5
355503:355518	attR	NA	NA	NA	NA
WP_051908389.1\|357078_360969_+	hypothetical protein	NA	NA	NA	NA
WP_038463043.1\|361357_362356_+	response regulator	NA	NA	NA	NA
WP_038463045.1\|362584_363190_-	DNA resolvase	A0A141DZX2	Streptococcus_phage	2.8e-11	33.3
WP_051908390.1\|363603_363921_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	3.9e-25	58.4

DBSCAN-SWA_4

992756 : 1092170

Escherichia_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038464370.1\|992756_993470_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.2e-51	48.1
WP_038464373.1\|993832_994837_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_051908584.1\|995856_1003287_-	GNAT family N-acetyltransferase	D0R7J2	Paenibacillus_phage	5.8e-34	32.4
WP_038464376.1\|1003880_1004729_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_051908586.1\|1004718_1005480_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_038464379.1\|1005719_1006427_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_084676034.1\|1006521_1006710_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_038464382.1\|1007227_1007656_+\|transposase	IS200/IS605 family transposase	Q331U4	Clostridium_botulinum_C_phage	2.5e-19	37.2
WP_038464385.1\|1007848_1008667_+	hypothetical protein	NA	NA	NA	NA
WP_075261560.1\|1010052_1010328_+\|transposase	transposase	NA	NA	NA	NA
WP_038464391.1\|1010714_1011140_+	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_038464370.1\|1011446_1012160_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.2e-51	48.1
WP_156956651.1\|1012178_1012694_-	hypothetical protein	NA	NA	NA	NA
WP_038464402.1\|1012920_1013433_-	hypothetical protein	NA	NA	NA	NA
WP_038462876.1\|1013532_1014237_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	7.6e-37	41.1
WP_051908345.1\|1014283_1014673_-\|transposase	DDE transposase	A0A1V0E8E1	Vibrio_phage	1.9e-13	39.6
WP_084675911.1\|1014825_1014978_-	hypothetical protein	NA	NA	NA	NA
WP_051908592.1\|1015528_1015810_-	WGR domain-containing protein	NA	NA	NA	NA
WP_038464405.1\|1016000_1016198_-	DUF4113 domain-containing protein	NA	NA	NA	NA
WP_038464408.1\|1016422_1016641_+	hypothetical protein	NA	NA	NA	NA
WP_038464410.1\|1016715_1017129_-	AMP-binding protein	NA	NA	NA	NA
WP_051908595.1\|1017162_1021752_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	5.1e-182	30.0
WP_051908597.1\|1021829_1030001_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.1e-210	30.4
WP_156956652.1\|1030201_1030468_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_051908602.1\|1030460_1030892_-	hypothetical protein	NA	NA	NA	NA
WP_084675913.1\|1031036_1031876_-	thioesterase	NA	NA	NA	NA
WP_038462876.1\|1032072_1032777_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	7.6e-37	41.1
WP_038462904.1\|1033789_1034500_+\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	3.4e-29	37.0
WP_156956653.1\|1034496_1034988_-	hypothetical protein	NA	NA	NA	NA
WP_038464422.1\|1035189_1036908_-	hypothetical protein	NA	NA	NA	NA
WP_038464425.1\|1037382_1037961_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.6e-38	66.7
WP_038464429.1\|1038054_1039164_+	Fic family protein	D7RWK9	Brochothrix_phage	1.4e-13	24.5
WP_156956654.1\|1039370_1039607_-	hypothetical protein	NA	NA	NA	NA
WP_156956655.1\|1039669_1042099_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_038464438.1\|1042540_1043074_-	hypothetical protein	A0A0G2Y404	Acanthamoeba_polyphaga_mimivirus	7.8e-10	33.6
WP_038464441.1\|1043593_1045996_-	hypothetical protein	A0A0G2Y404	Acanthamoeba_polyphaga_mimivirus	3.5e-09	33.6
WP_038464444.1\|1046215_1046548_-	hypothetical protein	A0A193GZ61	Enterobacter_phage	2.0e-08	31.0
WP_038464447.1\|1047244_1047493_-	hypothetical protein	NA	NA	NA	NA
WP_084675917.1\|1047508_1047958_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_038464449.1\|1047963_1048932_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.8e-49	37.2
WP_038464452.1\|1049067_1049505_+	hypothetical protein	NA	NA	NA	NA
WP_038462882.1\|1050008_1051013_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_156956656.1\|1051120_1051705_-	DUF483 domain-containing protein	NA	NA	NA	NA
WP_038464457.1\|1051734_1053294_-	hypothetical protein	NA	NA	NA	NA
WP_038464458.1\|1054122_1054320_+	hypothetical protein	NA	NA	NA	NA
WP_075261562.1\|1054498_1056682_+	FxsB family radical SAM/SPASM domain protein	NA	NA	NA	NA
WP_038464462.1\|1056635_1057250_+	hypothetical protein	NA	NA	NA	NA
WP_038464466.1\|1057278_1059084_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.6e-30	25.4
WP_038464469.1\|1059112_1059874_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_038464472.1\|1060011_1060287_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_038464475.1\|1060672_1061254_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_051908611.1\|1061402_1061915_+	hypothetical protein	NA	NA	NA	NA
WP_075261607.1\|1062024_1063509_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_038463055.1\|1063501_1064248_+	AAA family ATPase	U5N3V8	Enterobacteria_phage	6.8e-36	35.7
WP_038464478.1\|1064649_1065249_-	hypothetical protein	NA	NA	NA	NA
WP_038464481.1\|1065311_1066130_-	hypothetical protein	NA	NA	NA	NA
WP_051908613.1\|1066333_1070287_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	6.9e-87	26.2
WP_051908616.1\|1070299_1078702_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	9.6e-78	30.5
WP_038464484.1\|1078784_1080380_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_051908618.1\|1080553_1081951_-	serine/threonine protein kinase	NA	NA	NA	NA
WP_051908620.1\|1082340_1082964_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_051908623.1\|1082960_1083368_+	hypothetical protein	S5VXX4	Leptospira_phage	2.7e-10	30.3
WP_038464487.1\|1083770_1085033_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	9.0e-89	42.7
WP_038464493.1\|1085768_1086473_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	6.8e-54	53.1
WP_051908625.1\|1086691_1088614_+	hypothetical protein	NA	NA	NA	NA
WP_038464496.1\|1088988_1090122_+	ATP-binding protein	NA	NA	NA	NA
WP_038464493.1\|1090851_1091556_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	6.8e-54	53.1
WP_038464499.1\|1091978_1092170_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1097307 : 1173228

Escherichia_phage(33.33%)

transposase,integrase

attL 1172219:1172246|attR 1175350:1175377

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051908629.1\|1097307_1098162_+\|transposase	IS481 family transposase	S5VKT1	Leptospira_phage	6.9e-08	35.4
WP_038464528.1\|1098255_1099302_+\|transposase	IS481 family transposase	A0A077SLK2	Escherichia_phage	1.7e-154	75.1
WP_051908631.1\|1100768_1101098_-	hypothetical protein	NA	NA	NA	NA
WP_084675921.1\|1101082_1101286_-	hypothetical protein	A0A2L1IVB6	Escherichia_phage	6.4e-05	38.5
WP_156956658.1\|1101544_1102681_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_038464534.1\|1102720_1103512_-	cell division protein ZapE	A0A2L1IVB6	Escherichia_phage	6.0e-75	56.7
WP_038464493.1\|1104764_1105469_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	6.8e-54	53.1
WP_038464540.1\|1105566_1106502_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_156956659.1\|1106637_1107618_-	hypothetical protein	NA	NA	NA	NA
WP_038464545.1\|1107851_1108700_+	hypothetical protein	NA	NA	NA	NA
WP_075261616.1\|1108713_1109997_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_051908635.1\|1110095_1111109_-	response regulator	NA	NA	NA	NA
WP_038464551.1\|1111937_1112174_-	hypothetical protein	NA	NA	NA	NA
WP_038464553.1\|1112394_1112673_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_038464556.1\|1112740_1112971_-	hypothetical protein	NA	NA	NA	NA
WP_038464559.1\|1113167_1116662_+	AAA family ATPase	A0A2P0VMS9	Tetraselmis_virus	5.1e-09	32.9
WP_038464562.1\|1116678_1117143_+	hypothetical protein	NA	NA	NA	NA
WP_038464565.1\|1117297_1117840_+	hypothetical protein	NA	NA	NA	NA
WP_038464568.1\|1118463_1120329_-	hypothetical protein	NA	NA	NA	NA
WP_038464571.1\|1120636_1121236_-	hypothetical protein	NA	NA	NA	NA
WP_051908637.1\|1122226_1123369_+	hypothetical protein	NA	NA	NA	NA
WP_038464574.1\|1123280_1125761_+	sel1 repeat family protein	NA	NA	NA	NA
WP_051908638.1\|1125984_1127307_+	hypothetical protein	NA	NA	NA	NA
WP_084675923.1\|1127547_1127958_-\|transposase	transposase	Q75QL1	Wolbachia_phage	3.1e-30	53.1
WP_038464577.1\|1127959_1128232_-	DUF4158 domain-containing protein	NA	NA	NA	NA
WP_038464578.1\|1128344_1128947_+	resolvase	H2A0H0	Bacteroides_phage	3.2e-28	37.5
WP_084676035.1\|1129029_1132161_-	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_038462597.1\|1132574_1133672_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_038464584.1\|1134306_1134699_-	hypothetical protein	NA	NA	NA	NA
WP_084675925.1\|1136987_1139153_-	hypothetical protein	NA	NA	NA	NA
WP_156956660.1\|1139868_1140027_+	hypothetical protein	NA	NA	NA	NA
WP_156956661.1\|1140039_1140450_+	hypothetical protein	NA	NA	NA	NA
WP_038464588.1\|1141461_1142058_-	hypothetical protein	NA	NA	NA	NA
WP_038464592.1\|1142850_1143672_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_075261566.1\|1144153_1144417_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038464594.1\|1144318_1144615_-	hypothetical protein	NA	NA	NA	NA
WP_051908645.1\|1144871_1147151_+	response regulator	A0A1V0SGX0	Hokovirus	4.8e-56	36.7
WP_038462882.1\|1147362_1148367_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_038464595.1\|1148689_1149403_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.0e-52	48.9
WP_038464597.1\|1149437_1149872_-	hypothetical protein	NA	NA	NA	NA
WP_038464599.1\|1149940_1150921_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_038464601.1\|1151057_1152248_-	hypothetical protein	NA	NA	NA	NA
WP_038464604.1\|1152735_1153617_-	hypothetical protein	NA	NA	NA	NA
WP_051908649.1\|1153962_1154931_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.8e-49	35.1
WP_084675927.1\|1154936_1155299_+\|transposase	transposase	NA	NA	NA	NA
WP_038464606.1\|1155519_1156878_+	hypothetical protein	NA	NA	NA	NA
WP_038464608.1\|1156874_1157294_+	hypothetical protein	NA	NA	NA	NA
WP_038464611.1\|1157616_1158180_-	recombinase family protein	I1ZBD6	Salisaeta_icosahedral_phage	6.3e-42	45.6
WP_038464613.1\|1158630_1158873_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_038464615.1\|1158865_1159264_+	PIN domain-containing protein	NA	NA	NA	NA
WP_038464617.1\|1159322_1165127_-	hypothetical protein	NA	NA	NA	NA
WP_038464618.1\|1165129_1166419_-	patatin-like phospholipase family protein	A0A1V0SF81	Hokovirus	7.4e-06	29.4
WP_038464619.1\|1166593_1167232_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	7.6e-36	47.6
WP_084675929.1\|1167683_1171031_+	hypothetical protein	NA	NA	NA	NA
1172219:1172246	attL	NA	NA	NA	NA
WP_084675931.1\|1172532_1172937_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_051908658.1\|1172940_1173228_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.1e-09	33.0
1175350:1175377	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1422936 : 1549559

Wolbachia_phage(21.05%)

protease,tRNA,transposase,integrase

attL 1427234:1427252|attR 1529057:1529077

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038464994.1\|1422936_1424340_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_038464996.1\|1424423_1425266_+	hypothetical protein	NA	NA	NA	NA
WP_038464999.1\|1425232_1426264_+	patatin-like phospholipase family protein	G9E620	Micromonas_pusilla_virus	3.0e-05	27.4
WP_075261571.1\|1426478_1427357_+	LysR family transcriptional regulator	NA	NA	NA	NA
1427234:1427252	attL	NA	NA	NA	NA
WP_038465005.1\|1428373_1429042_+	hypothetical protein	NA	NA	NA	NA
1427234:1427252	attL	NA	NA	NA	NA
WP_051908695.1\|1429120_1429423_+	helix-turn-helix transcriptional regulator	K4K6E9	Caulobacter_phage	5.8e-10	43.5
WP_156956688.1\|1429563_1430451_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_038465009.1\|1430447_1430924_+	hypothetical protein	NA	NA	NA	NA
WP_038465011.1\|1431289_1432024_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_038465013.1\|1432111_1434211_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_038465015.1\|1434214_1435543_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_075261622.1\|1435558_1435903_-	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_038465019.1\|1435934_1436528_-	hypothetical protein	NA	NA	NA	NA
WP_038465022.1\|1436541_1437561_-	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_038465024.1\|1437536_1439213_-	flagellar M-ring protein FliF	NA	NA	NA	NA
WP_038465026.1\|1439466_1440021_+	hypothetical protein	NA	NA	NA	NA
WP_038465028.1\|1440411_1441368_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_051908696.1\|1441419_1442376_-	site-specific tyrosine recombinase XerD	W8EHC2	Mycobacterium_phage	3.9e-12	29.3
WP_038465030.1\|1442335_1442761_-	hypothetical protein	NA	NA	NA	NA
WP_038465032.1\|1442849_1444160_-	flagellar protein export ATPase FliI	NA	NA	NA	NA
WP_038465033.1\|1444323_1445109_+	response regulator transcription factor	W8CYM9	Bacillus_phage	7.4e-25	31.7
WP_156956689.1\|1445245_1445686_-	hypothetical protein	NA	NA	NA	NA
WP_051908697.1\|1445929_1446286_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038465037.1\|1446349_1447042_-	hypothetical protein	NA	NA	NA	NA
WP_051908698.1\|1447103_1447457_-	helix-turn-helix domain-containing protein	K4K6E9	Caulobacter_phage	2.2e-08	45.6
WP_084675957.1\|1447870_1448224_+	F-box protein	NA	NA	NA	NA
WP_038465041.1\|1448207_1449863_+	hypothetical protein	NA	NA	NA	NA
WP_038465043.1\|1450150_1451056_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_038465045.1\|1451286_1452750_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_075261623.1\|1452910_1454209_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_038465049.1\|1454221_1455220_-	response regulator	NA	NA	NA	NA
WP_156956690.1\|1455455_1455623_+	hypothetical protein	NA	NA	NA	NA
WP_051908699.1\|1455631_1456156_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	8.4e-33	44.8
WP_051908700.1\|1456134_1456380_-\|transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	3.9e-17	52.6
WP_038467301.1\|1456449_1456614_+	hypothetical protein	NA	NA	NA	NA
WP_084675959.1\|1456714_1457077_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_084675961.1\|1457042_1457438_+\|transposase	transposase	Q75QL1	Wolbachia_phage	1.8e-27	56.3
WP_038465051.1\|1457502_1462464_-	hypothetical protein	NA	NA	NA	NA
WP_084675963.1\|1463792_1464128_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038465057.1\|1464362_1465313_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	4.4e-40	38.8
WP_156956763.1\|1465325_1466258_-\|transposase	transposase	Q75QL1	Wolbachia_phage	6.9e-62	49.3
WP_075261573.1\|1466922_1467768_+	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	7.5e-15	27.9
WP_038465061.1\|1467906_1468911_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_051908702.1\|1469551_1470649_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_051908703.1\|1470804_1471125_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_084675965.1\|1471121_1471484_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_051908705.1\|1472284_1472869_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
1471990:1472008	attR	NA	NA	NA	NA
WP_084675968.1\|1473119_1473854_-	hypothetical protein	NA	NA	NA	NA
1471990:1472008	attR	NA	NA	NA	NA
WP_051908706.1\|1474544_1475492_+	EamA family transporter	NA	NA	NA	NA
WP_038465065.1\|1476178_1476883_+	hypothetical protein	NA	NA	NA	NA
WP_038465068.1\|1477252_1477453_+	hypothetical protein	NA	NA	NA	NA
WP_038465070.1\|1477799_1478015_+	hypothetical protein	NA	NA	NA	NA
WP_038465072.1\|1478466_1478964_-	hypothetical protein	NA	NA	NA	NA
WP_038465074.1\|1479841_1480423_+	hypothetical protein	NA	NA	NA	NA
WP_038465076.1\|1480846_1481164_-	hypothetical protein	NA	NA	NA	NA
WP_038465079.1\|1481917_1482124_-	cold-shock protein	Q9AZD3	Lactococcus_phage	1.3e-08	42.6
WP_156956763.1\|1483000_1483933_+\|transposase	transposase	Q75QL1	Wolbachia_phage	6.9e-62	49.3
WP_038465080.1\|1483913_1489061_-	hypothetical protein	NA	NA	NA	NA
WP_051908707.1\|1489083_1491885_-	hypothetical protein	NA	NA	NA	NA
WP_038465082.1\|1493195_1493924_+	hypothetical protein	NA	NA	NA	NA
WP_051908709.1\|1494282_1495464_+	hypothetical protein	NA	NA	NA	NA
WP_156956691.1\|1495532_1495733_-	hypothetical protein	NA	NA	NA	NA
WP_038465085.1\|1495835_1497476_+	hypothetical protein	NA	NA	NA	NA
WP_051908712.1\|1499317_1499602_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_051908713.1\|1499594_1500017_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_051908714.1\|1500231_1502496_-	sel1 repeat family protein	L7Y4H2	Megavirus	2.0e-14	35.3
WP_051908715.1\|1502585_1505672_-	SEL1-like repeat protein	A0A0G2Y2X0	Acanthamoeba_polyphaga_mimivirus	9.1e-18	25.7
WP_051908716.1\|1505794_1507843_-	sel1 repeat family protein	K7YAQ5	Megavirus	4.2e-11	26.8
WP_051908717.1\|1507848_1509591_-	sel1 repeat family protein	L7RDP7	Acanthamoeba_polyphaga_moumouvirus	3.5e-06	29.4
WP_051908718.1\|1509818_1512473_-	hypothetical protein	NA	NA	NA	NA
WP_038465087.1\|1512522_1514478_-	hypothetical protein	NA	NA	NA	NA
WP_156956692.1\|1514606_1516562_-	hypothetical protein	NA	NA	NA	NA
WP_038465091.1\|1516539_1517646_-	hypothetical protein	NA	NA	NA	NA
WP_038465093.1\|1517658_1519356_-	hypothetical protein	NA	NA	NA	NA
WP_084675970.1\|1519872_1520184_-\|transposase	transposase	NA	NA	NA	NA
WP_051908720.1\|1520291_1520561_-	hypothetical protein	NA	NA	NA	NA
WP_038465095.1\|1520918_1524392_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_156956764.1\|1524515_1525181_-	DUF1016 family protein	NA	NA	NA	NA
WP_051908722.1\|1525764_1527069_+	hypothetical protein	M1HHE0	Acanthocystis_turfacea_Chlorella_virus	1.6e-08	34.2
WP_038465097.1\|1527457_1528987_+	hypothetical protein	NA	NA	NA	NA
WP_038465099.1\|1529056_1529248_-	hypothetical protein	NA	NA	NA	NA
WP_038465101.1\|1529505_1530381_+	hypothetical protein	NA	NA	NA	NA
WP_038465103.1\|1530393_1531662_+	hypothetical protein	NA	NA	NA	NA
WP_156956693.1\|1532462_1532687_-	hypothetical protein	NA	NA	NA	NA
WP_051908723.1\|1533470_1536113_-	sel1 repeat family protein	NA	NA	NA	NA
WP_051908724.1\|1536162_1539030_-	hypothetical protein	NA	NA	NA	NA
WP_051908725.1\|1539276_1540404_-	hypothetical protein	NA	NA	NA	NA
WP_038465109.1\|1541014_1542688_+	F-box protein	NA	NA	NA	NA
WP_084675972.1\|1542814_1544521_+	F-box protein	NA	NA	NA	NA
WP_038465113.1\|1544950_1545673_+	hypothetical protein	NA	NA	NA	NA
WP_038465114.1\|1545858_1546461_+	F-box protein	NA	NA	NA	NA
WP_038465117.1\|1547528_1548242_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.2e-52	48.9
WP_038462882.1\|1548554_1549559_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1564654 : 1621881

Streptococcus_phage(16.67%)

transposase,integrase

attL 1611892:1611906|attR 1626077:1626091

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075261607.1\|1564654_1566139_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_051908730.1\|1566242_1566722_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_038465143.1\|1566744_1569108_-	hypothetical protein	NA	NA	NA	NA
WP_156956695.1\|1570249_1570447_+	hypothetical protein	NA	NA	NA	NA
WP_038465147.1\|1570893_1573530_+	hypothetical protein	NA	NA	NA	NA
WP_038465148.1\|1573593_1573797_-	hypothetical protein	NA	NA	NA	NA
WP_038465152.1\|1575217_1576102_+	hypothetical protein	NA	NA	NA	NA
WP_051908732.1\|1577112_1577364_-	hypothetical protein	NA	NA	NA	NA
WP_038465154.1\|1577417_1577633_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_038465156.1\|1577696_1578389_-	hypothetical protein	NA	NA	NA	NA
WP_038465158.1\|1578454_1579003_-	recombinase family protein	A0JC18	Ralstonia_phage	8.2e-31	44.3
WP_051908733.1\|1579161_1579824_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_038465160.1\|1579813_1581199_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_075261577.1\|1581273_1582824_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.9e-129	49.8
WP_084675978.1\|1583586_1584012_+\|transposase	transposase	A0A1P8CWQ3	Bacillus_phage	1.8e-17	45.8
WP_084675980.1\|1584002_1584518_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1X9I6C6	Streptococcus_phage	1.3e-06	32.5
WP_084675981.1\|1584887_1586561_+	leucine-rich repeat protein	NA	NA	NA	NA
WP_038465165.1\|1587251_1588637_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_051908735.1\|1588626_1589208_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_038465168.1\|1589752_1591609_-	hypothetical protein	NA	NA	NA	NA
WP_038465169.1\|1591832_1592801_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	2.7e-45	33.8
WP_038465171.1\|1592936_1593644_+\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_038465173.1\|1593712_1594507_-	hypothetical protein	NA	NA	NA	NA
WP_156956696.1\|1594510_1595272_-	hypothetical protein	NA	NA	NA	NA
WP_038465177.1\|1595285_1596281_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.7e-18	32.0
WP_038465179.1\|1596295_1597759_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_084675982.1\|1597774_1598437_-	DUF1963 domain-containing protein	NA	NA	NA	NA
WP_038465184.1\|1598485_1599712_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_051908896.1\|1599742_1600243_-	HIT family protein	NA	NA	NA	NA
WP_084675983.1\|1600279_1600981_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_156956697.1\|1600980_1601340_-	hypothetical protein	NA	NA	NA	NA
WP_038465186.1\|1601728_1601992_+\|transposase	transposase	NA	NA	NA	NA
WP_084675984.1\|1601976_1602408_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_084675985.1\|1602404_1602629_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	S5WIU1	Leptospira_phage	7.3e-10	44.4
WP_156956698.1\|1602832_1603985_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-20	27.9
WP_156956699.1\|1605277_1605853_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_051908741.1\|1605663_1606149_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038465190.1\|1606655_1608512_-	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_156956763.1\|1608936_1609869_+\|transposase	transposase	Q75QL1	Wolbachia_phage	6.9e-62	49.3
WP_051908742.1\|1609903_1610725_-	hypothetical protein	NA	NA	NA	NA
WP_156956765.1\|1610879_1611086_-\|transposase	transposase	NA	NA	NA	NA
WP_038465194.1\|1611169_1611760_-	recombinase family protein	A0A0C4UR34	Shigella_phage	1.2e-40	50.3
1611892:1611906	attL	NA	NA	NA	NA
WP_038465196.1\|1612185_1612428_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_051908897.1\|1612516_1612807_+	hypothetical protein	NA	NA	NA	NA
WP_084676040.1\|1613260_1614022_-	sugar O-acetyltransferase	NA	NA	NA	NA
WP_075261625.1\|1614441_1614699_+\|transposase	transposase	NA	NA	NA	NA
WP_038465200.1\|1615024_1615963_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_051908743.1\|1616334_1617291_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	3.8e-47	38.8
WP_038465202.1\|1617330_1619052_-	hypothetical protein	NA	NA	NA	NA
WP_038465205.1\|1619062_1620385_-	hypothetical protein	NA	NA	NA	NA
WP_084675986.1\|1621476_1621881_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1X9I6C6	Streptococcus_phage	3.0e-06	32.5
1626077:1626091	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP008941.1|WP_156956660.1|1139868_1140027_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP008941.1|WP_156956660.1|1139868_1140027_+|hypothetical-protein

1139868_1140027_+

52 aa aa

1097307-1173228

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP008941_3	Orphan	3.1\|1122425\|25\|NZ_CP008941\|PILER-CR	1122425-1122449	25	1122561-1122585	0
NZ_CP008941_3	Orphan	3.1\|1122425\|25\|NZ_CP008941\|PILER-CR	1122425-1122449	25	1122888-1122912	1
NZ_CP008941_3	Orphan	3.1\|1122425\|25\|NZ_CP008941\|PILER-CR	1122425-1122449	25	1122960-1122984	2

1. spacer 3.1|1122425|25|NZ_CP008941|PILER-CR matches to NZ_CP008941 position: 1122561-1122585, mismatch: 0

ctaccctcacttccttgaatttgga	CRISPR spacer
ctaccctcacttccttgaatttgga	Protospacer
*************************

2. spacer 3.1|1122425|25|NZ_CP008941|PILER-CR matches to NZ_CP008941 position: 1122888-1122912, mismatch: 1

ctaccctcacttccttgaatttgga	CRISPR spacer
ctaccctcacttccttgaacttgga	Protospacer
*******************.*****

3. spacer 3.1|1122425|25|NZ_CP008941|PILER-CR matches to NZ_CP008941 position: 1122960-1122984, mismatch: 2

ctaccctcacttccttgaatttgga	CRISPR spacer
ctaccctcacttccttggatctgga	Protospacer
*****************.**.****

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP008941

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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