CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP008884	Dyella japonica A8 chromosome, complete genome	3 crisprs	cas3,csa3,WYL,DinG,DEDDh	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP008884_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008884_1

1220131-1220215

Orphan

Consensus_repeat	Method
GTCATCCTCGCGAACCCCGAAAAGGGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008884_1

>merge|NZ_CP008884|1|1220131-1220215|CRISPRCasFinder
GTCATCCTCGCGAACCCCGAAAAGGGGGCCAGAACGGGCATTCGGCTCCCCTCATCGTCATCCCCGCGAACCCCGAAAAGGGGGC

>NZ_CP008884|1|1|1220131-1220215|CRISPRCasFinder
GTCATCCTCGCGAACCCCGAAAAGGGGGC	CAGAACGGGCATTCGGCTCCCCTCATC
GTCATCCCCGCGAACCCCGAAAAGGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008884.1\|WP_019464947.1\|1226083_1226530_-\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NZ_CP008884.1\|WP_019464946.1\|1224316_1226059_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143479
NZ_CP008884.1\|WP_019464086.1\|1205154_1205724_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008884.1\|WP_019464944.1\|1223266_1223905_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP008884.1\|WP_019464945.1\|1223910_1224081_-\|DUF1328-domain-containing-protein	unknown	unknown	unknown
NZ_CP008884.1\|WP_019464937.1\|1209439_1212109_+\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|237914
NZ_CP008884.1\|WP_019464942.1\|1220344_1220971_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP008884.1\|WP_019464950.1\|1228811_1229294_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NZ_CP008884.1\|WP_014404075.1\|1226964_1227180_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP008884.1\|WP_019464939.1\|1214380_1215493_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP008884.1\|WP_019464084.1\|1206886_1207801_+\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|235293
NZ_CP008884.1\|WP_019464936.1\|1209041_1209272_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008884.1\|WP_019464943.1\|1221373_1223104_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP008884.1\|WP_019464085.1\|1205723_1206890_+\|heme-A-synthase	unknown	unknown	gnl\|CDD\|367131
NZ_CP008884.1\|WP_019464938.1\|1212441_1214091_+\|Na/Pi-cotransporter-family-protein	unknown	unknown	gnl\|CDD\|224202
NZ_CP008884.1\|WP_019464948.1\|1227303_1228329_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP008884.1\|WP_019464940.1\|1215485_1218587_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226220
NZ_CP008884.1\|WP_019464949.1\|1228439_1228799_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|183219
NZ_CP008884.1\|WP_019464087.1\|1204420_1205158_+\|SURF1-family-protein	unknown	unknown	gnl\|CDD\|119401
NZ_CP008884.1\|WP_019464941.1\|1218589_1220107_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830

Protein	Function_ID	Function_description	E-value
NZ_CP008884.1\|WP_019464947.1\|1226083_1226530_-\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	6.26972e-59
NZ_CP008884.1\|WP_019464946.1\|1224316_1226059_+\|hypothetical-protein	gnl\|CDD\|143479	cd07563, Peptidase_S41_IRBP, Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors and facilitates its delivery to the RPE. Conversely, IRBP can promote the release of 11-cis-retinal from the RPE, prevent its isomerization in the subretinal space, and transfer it to photoreceptors. In vivo evidence implicates IRBP as a retinoid transporter in the visual cycle, suggesting a critical role for IRBP in cone function essential for human vision. IRBP is a dominant autoimmune antigen in the eye; IRBP proteolysis analysis has proven a useful biomarker for autoimmune uveitis (AU) disorders, a major cause of blindness. This family also includes a chlamydia-secreted protein, designated chlamydia protease-like activity factor (CPAF), known to degrade host proteins, enabling Chlamydia to evade host defenses and replicate.	1.31288e-39
NZ_CP008884.1\|WP_019464944.1\|1223266_1223905_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.18466e-15
NZ_CP008884.1\|WP_019464937.1\|1209439_1212109_+\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|237914	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.	0
NZ_CP008884.1\|WP_019464942.1\|1220344_1220971_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.0024e-38
NZ_CP008884.1\|WP_019464950.1\|1228811_1229294_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	4.43799e-42
NZ_CP008884.1\|WP_014404075.1\|1226964_1227180_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	6.19903e-16
NZ_CP008884.1\|WP_019464939.1\|1214380_1215493_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.36474e-45
NZ_CP008884.1\|WP_019464084.1\|1206886_1207801_+\|protoheme-IX-farnesyltransferase	gnl\|CDD\|235293	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.	7.97105e-146
NZ_CP008884.1\|WP_019464941.1\|1218589_1220107_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	6.67892e-102
NZ_CP008884.1\|WP_019464943.1\|1221373_1223104_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP008884.1\|WP_019464085.1\|1205723_1206890_+\|heme-A-synthase	gnl\|CDD\|367131	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein. This is a family of integral membrane proteins. CtaA is required for cytochrome aa3 oxidase assembly in Bacillus subtilis. COX15 is required for cytochrome c oxidase assembly in yeast.	5.38204e-62
NZ_CP008884.1\|WP_019464938.1\|1212441_1214091_+\|Na/Pi-cotransporter-family-protein	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	2.55081e-150
NZ_CP008884.1\|WP_019464948.1\|1227303_1228329_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP008884.1\|WP_019464940.1\|1215485_1218587_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NZ_CP008884.1\|WP_019464949.1\|1228439_1228799_+\|dihydroneopterin-aldolase	gnl\|CDD\|183219	PRK11593, folB, bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase.	1.26742e-43
NZ_CP008884.1\|WP_019464087.1\|1204420_1205158_+\|SURF1-family-protein	gnl\|CDD\|119401	cd06662, SURF1, SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.	4.74459e-43

>NZ_CP008884.1|WP_019464941.1|1218589_1220107_+|efflux-transporter-outer-membrane-subunit
MTKTKCLYPFRPVLAVSIALALTACAVGPDYKRPQAPKAKEYAPTPIARDTASATGAGGESQHLLQSMDMPGQWWTLFHSEPLNALIDDALKHNADAEAAHAALKAAWEAAYAQRGVYFPQVTASVNPTRQDIAKDLASPASSGADLYNLTTAQVSVSYVLDLWGGNRRQVESLVAQANQQRFQLEATYLTITSNVVNAAIEEASLRAQIQTTQQIIEAQTRILATLQRQHELGDASDASVAAQVTALEQSKATLPPLDKQLAQQRDLLAVLTGRTPDQRIDAQFTLDSLQLPTDLPLSLPAQLVEQRPDVRMSEEALHSASAQVGVAIANRLPNVQINASFGRASEKASQLFNAGNGFWNLGAAVSQPLFDGGTLKHKQRGAEAQLQQAAAQYRSTVLQAVQNVADTLHAIDADAQALAASERAERAAAHSLDVAKRQLALGDLSESAMLNTELAWQQTALALVQARAARYADTVALFQALGGGWWHRTDTADMAGSGVSKESH
>NZ_CP008884.1|WP_019464940.1|1215485_1218587_+|efflux-RND-transporter-permease-subunit
MINAIFHFCFQKRVMFFVISALVLCFGYYSWTQLAIEAYPELSDVTAQVTTQVPGLAAEEIEQQITIPLERGLSGTPGLVSMRSSSTFGLSLITLVFKDGAEDYWSRQRVMERISQVTLPAGITPGLDPVSGPAGEIYRYTLESTSKNLMELSEIQRWVVVPALEKVSGVANVDIFGGFTKEFRLELDPSKLLKYGVSVSQVSSAISANTANAGGGRITRGEQSYIVRGIGMVHTLKDLGDVVVTQSNGVPVLVRDLGKLEYGHQVREGILGKNNNPDTIEGIVDLLKYENPSRVLEGIHATVAELNKQLAGQDVRIVPYIDRDDLVEATKEKVFHTVMEGVGLVCIVLILFLGSPRSAMVAAVAIPMSLVTVFILMQFTHMPANLFSLGAIDFGVIVDGTIVVTEAILRRREEKPNAVLTEDDVMTVTKHVGRSIFFATLIIVTAYLPLFAFEHAEGKLFRPMAFTVGYALLAALLCTVTLTPGLAYIALRKPRKIFHNKPLERLQAAFTATLAHLLGRLPVVYAVAGAAFLGVVVLGASIGREFLPELDEGSLWLQVQMPTGLSMDKASAMTADLRRAVREFPEVSYIVTQMGRNDTGTDPWTPSHVEAGVGLKPYDTWPDHESKAEFLRRFNARMQQIPGISVGISQPIVDGENDMIGGAHSPLVLRIYGDDFNELRRIGGEIVDVLRGVRGTAEASIFQEPPIPQLAITADRDAAARYGINVGDISNLIQTGIGGAPITQVYVADRIYNVTARVSNATANSLEAVGQLPLTSAGGAQVPLKQVADIRYKTGESTIAHENGKRQITIRIDNRDRALSEYLADAQQQIDAKVHFDKQNYQLQWAGTFENQQRAQARLVVVMGLVMAIMLVFLFMEFGKLHQAVMVLAVVPLATVGGLISLHLRGETLNIATAVGFIALFGVAVQNGIIMVANINRVRKSGHNLRDAVLEGATERFRPVLMTATVASVGMLPAALATGIGTDVQRGLATVVVGGLPIATLLTLFILPGFYFALERFLERRRRQHRPHPSREL
>NZ_CP008884.1|WP_019464939.1|1214380_1215493_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MFHRLSRVSIALAISASLAACSHHADDQAAAPAFVDDHGTLRVPDGSPLRKELVIAPVDMREAAHAMQFPATVEADPAHTANVVAPLTGRITELKVGLGDHVEHNQLLAVIDSGDMAQAHADVVKAADALALAKKTLDRAHGVQQAGGNAVKDLEAAQSGYNQAQAELTRAQTREQSLNTAGQAGSARGIRITSPVSGYVTTLTGSQGTYVNDTTTPLMTIADLSSVWITANVPEADVGHIAKGEAVDAVLSAYPDQVFHGKVSFVSQVLQSDTRRDMVRAVFPNADGRLKPNMYANASIAVPQPAQVIVPESALLMNNDSTTVFVEVSPWTFQRRTVELSYDETAGARVLKGLKAGDRVVVKGGVLLND
>NZ_CP008884.1|WP_019464938.1|1212441_1214091_+|Na/Pi-cotransporter-family-protein
MKGTFALLDIAGYVALLLWGTHMVTSGVLRGYGSMLRRWMGRYLGHRPAALGFGICVTALLQSSTATGLMATSFAASGFLGLAPGLAVMLGANVGTTLIVQVMSFDISIVAPVLILIGFTVHRRTDDVSYENLGRVAIGLGLMLLALHLLVGAMAPVENAAVLHAILQSLASEPVLAMLVAALLTWACHSSVAVVLLIVSLATAGVVDAPGALALVLGANLGSTIPALMEAHTPFARRLPMGNLMVRAFGCIVCLPILPLVAHWLAPLGASPARIVVNFHTAFNLALALIFIVPVESLSRLLVRLLPEPPKPNDPGVPQYLDEAALDSANVALANAARESMRMADMVEGMLKGIVEVFGKDDRARAAAVSRMDPSLDKLGMAIREYLADLGGQPLNEEDGERSQEILAFVINIEHIGDITANNLMEFAAKKAASGQDFSADDIQDLAAMHTLVMESLRLGLTVFLRGDLRAAQQLIARKEALWRLENEASERHIKSLRERRDGGGGGDVYLRILRDLKRIHSHLAALAYLPLERAGLLQDRLVREHATT
>NZ_CP008884.1|WP_019464937.1|1209439_1212109_+|magnesium-translocating-P-type-ATPase
MLKHSTQTVTGKAAGTSAAAPVRVAVAQEAFRHNEALYAALDTSAAGLNEEQISERLDRDGLNEVSHEKPPHWSVQLLKAFKNPFIIVLLVLAVVQLVTDGSDLTGPIIIAVMVGISVLLSFTQEYRSSKAAEKLKAMVRNTATVTRRASDGHSERIEVPVGELVAGDIVHLAAGDMVPADLRLVSAKDLFISQAILTGESLPVEKSAPAHVHSGDELDSGQHGDNPLDLPTVCYMGTNVVSGTATAVVVGTGARTYLGSLARTIVGQRVQTSFDRGVNSVSWLLIRFMAVMVPIVFIINGLDKHDWLQAFLFALSVAVGLTPEMLPLIVTANLAKGALAMSSRKVVVKRLNAIQNFGAMDVLCTDKTGTLTLDKIVLERHLDLYGEESDEALEYGYLNSRFQTGLKNLMDKAVLEHRDLEETAQHYRIVDEIPFDFQRRRMSVVLGNGDGHELLVCKGAVEEMLSICSSAQAGDEILPMTDEMRADIKAMTRGLNEDGLRVLVVAIKRQPPAGRAYGVADESNLIAVGCLAFLDPPKDSAATAIAALHHHGVEVKVITGDNEAVTRKICREVGLDVEHSAQGKHIEPLSDDELDELVKRTTVFAKMSPLQKARVVKSLQRQGHTVGFLGDGINDAPALREADVGISVDTATDIAKESADIILLEKNLMVLEEGVIEGRITFGNIIKYIKMTASSNFGNMFSVLIASAFLPFLPMLPLQILVLNLLYDISQLSIPFDRMDDEYLRKPRKWDASDIGRFMVWIGPVSSIFDITTFLLLWYLFGANSPEHQSFFQSGWFIESLLTQTLIVHMIRTRKIPFVQSIASAPVLALTTAIIIIGMLVPYSGLGEKIGMMPMPGVYFGWLAATVLTYCVLTQLMKLVYIRRYGRWL
>NZ_CP008884.1|WP_019464936.1|1209041_1209272_+|hypothetical-protein
MKLLRDFFRLRVARPGRRADSRSWTITVPAPLAQVQSVPSSDTHRLSDAPRGLQVARRKEHAAPQAHRHLQLVSSH
>NZ_CP008884.1|WP_019464084.1|1206886_1207801_+|protoheme-IX-farnesyltransferase
MTMSSRFHEYLELTKPRVVALLVFCAVIGMFLAVPGLPPWRALVFGTLGIWMASGSAAAFNHLIDQRIDKVMARTAHRPLATGQLTPRQVFTFAFTLGVLSMVVLVVLVNPLTALLTFGGLIGYAVIYTAYLKRATPQNIVIGGLAGAIPPVLGWTAVTGELHPFALQLCLIIFVWTPPHFWALAIFRRDDYSRAQVPMLPVTHGVVFTRWHVLFYTILLVLVTLLPALTGYSGMVYLGGAAVLGAGFLYYAVRLLNPPDEFFAMKVFNYSIVYLMALFAFLLADHWLMEPLVHHQGVVFERTV
>NZ_CP008884.1|WP_019464085.1|1205723_1206890_+|heme-A-synthase
MTVRSPRVLRGLALLAAVFAFGVVMFGAFVRLSNAGLSCPDWPTCYGRATWPEQQHEIAQANQAFPDRPYETHKAWREQVHRFLAGTLGTLVFALALGASWRRPWARYAVIVGAVCAAVGVGMYMKGEHHWSLLVSLVAMALPIIAALGLGRPGAWRISVLALAVVVFQAMLGMWTVTLLLKPIVVMGHLMGGITTFALLAYAALRFAGVGANDDRYAGLRKAVVVGIVLLLAQIALGGWTSSNYAALACGTDFPKCLGQWMPATDFREGFVLWRGIGVNYEGGVLDMAARSAIQITHRLGALVVFCYLAWLAHRVSRQGLRSLGLAMAAVLVAQVLLGVSNVHFGLPLPVATAHNGVAALLLFTLLATLARTQKRHEDAMFLSHGYR
>NZ_CP008884.1|WP_019464086.1|1205154_1205724_+|hypothetical-protein
MNKPDPVKLRASRLKLLSIMLVFAAPIVAAILLTLSGWQPEGKANGQPVAPQRNFAAEQVPVSLTNGDTWAWRASEPQLTLVALAGPDCAKQCLDVLTKMAAARITLNQNASRLRLLYVGKPPADAAASGMTGYWKLGQDAMGALAPFTPTTPDTVSALLVESDGTALSFYPAGFDATGLRKDLQKVIR
>NZ_CP008884.1|WP_019464087.1|1204420_1205158_+|SURF1-family-protein
MKWLRRPSWFALLLTVAGALLFIRLGVWQLHRADEKEQILRRYATAETAAASDFAAVAANPPVDAFARVNVQGEYLADRLYLLDNPRHDQRGGVEVYAPFRPRNGDRLLLVDLGFLPGNGTDQAPQLPPLPTGAQDLHGLYVPAPGVGFEMGGNALARQTRWPKTTVYLDLPQVATDLGGALYPQVLTLDADPSSIYVREHTIDFSAMPPARHRAYAFQWFTFAVAALVILLVLHRRRPSRPGKP
>NZ_CP008884.1|WP_019464942.1|1220344_1220971_-|DedA-family-protein
MELLERLVTVFAENGYLAVFLALLLCGAGVPLPEDITLVAGGVIAGLGYANVHTMFGVGMAGVLVGDSGMFLLGHHFGARILKLRFVARVLTPERYAKVQHKFERYGNRLMFIARFLPGMRTAVFITAGSTHRVSFLRFFLLDGLAALISVPIWVYLGYFGADNHEWLAMWIHRGQHGLWLVGGIALVVALVLWWRHKRRVACESGSR
>NZ_CP008884.1|WP_019464943.1|1221373_1223104_-|DNA-primase
MRGRIPDSFIDELLARVDIVDVIERRVPLKKAGREWTACCPFHNERSPSFYVSPAKQFFHCFGCGAHGSAVKFLMDYERLEFPDAVEELAQSVGLTVPREGGDDRPREDKTDLYALLDAAASWYEKELPRSADAQAYCKKRGLDAQTIQRFRIGWAPAGFDGVIKALGGSDRRMKLLNEAGMVASNERGSRYDRFRERLMFPILDRRGRVIAFGGRVLQSEQGPKYLNSPETPLFHKGRELFAMWQVKQANPSLPRIVVVEGYMDVIAMHQAGLPIAVATLGTATTPEHTEVLFRAAPDVVFCFDGDRAGRAAAWKALESALPRLRDGRQAYFLFLPDGEDPDTLIRKEGKEGFEKRLKAATPLSEYFFGELAHDVDTGSLDGRARLAERARPLIARLPDGAFRDLMAQELEKRTGARTTLDNSPAPRTAVQRPTVVQRSLVRSAIALLLAQPGAADEVERPYGFLRLDKPGVELLAELIDLARSRPGINSASLVEHFAERAEYSALQKLMAAMVVGEPEAQRAEFFDALKRMEQQAVIQRRDWLTAKSREGTLDNAEKTELRELLAARVTPPKSA
>NZ_CP008884.1|WP_019464944.1|1223266_1223905_+|GNAT-family-N-acetyltransferase
MARPGLRVRFRPAAPEDADVAVPLIYSSGPTAFDYVFTTRDGGDAQVFLQHCFVDGAGEFGWRNHWVGVADGQVVAVGAGFGADTKWPFTLAAARQIIGHYGLRRGLGVIARGLRVESVIRPPDGDMHYLAHLAVLPELRGHGIGRALIDQLIGTARDAGRRRVTLDVAVSNPRAEALYRRAGFKVIGERRSQLANERGRVPDHRRMERVID
>NZ_CP008884.1|WP_019464945.1|1223910_1224081_-|DUF1328-domain-containing-protein
MLRWAIILAIVSIVTGWLGFGTLSGVTGAIAKLLFAVFIILFLLALLAVIGLIHLA
>NZ_CP008884.1|WP_019464946.1|1224316_1226059_+|hypothetical-protein
MRYGWTALGAACLLSFSVHAGDASLQQQYAHIQDLNNTSWRLVSAPSGDPQALAKAVELSRQSLASAEQMKAALRENAGLALEVTQRHSDALRILASAYALQNDREHALACLESLLKEAWVEASTADLLAKNHALDRLRDEPRYKAVIAALGRLDSQWRAPAIATTDTELDEAHRIAGLSLFWSEARYNFVHFELVPDLDWNQAYVDFLPKVIAAKSLHDYYEVMMRFAPLLHDGHTSITPPATISNEFYARPAIRTAMIDGHVLVTEVCSPKLASQVRVGDEVVSVDGQDVRQYAQERVEPYASTSTPQDTLVHVYDYRLLQGDHRQPVTLGLKDAAGRLRQVRLSRENDPSVQVAPTVDWRMLPDGVAYLAIHEFEDDDGVKAFERALPQILHAKGLILDLRRNTGGSDVVGAQILSYLTDRPLQGSRSRTQEYAPVYRADAGPYTAWNEWEAGTFQMERAQRYHGPVVVLVGPRTYSAAEDFVVAFDALKRGTLMGETTGGSTGEPLQFKLPGGGTARICTKHDSFPDGREFVGKGIAPQITVAPTVEDIRAGRDPVIQRALAVLAGKEASPATPAP
>NZ_CP008884.1|WP_019464947.1|1226083_1226530_-|GatB/YqeY-domain-containing-protein
MTLKQQLTDDMKTAMRGGEKDRLGVIRLILAAVKQREVDERIELDDVQTLAVLEKMVKQRKDSISQYQAANRQDLADVEQAEMKVIETYLPAKLSEEEIDALITAAIAETGASSARDMGKVVAAVKEKAAGRADMGVVSGRIKARLAG
>NZ_CP008884.1|WP_014404075.1|1226964_1227180_-|30S-ribosomal-protein-S21
MPSVKVRENEPFELALRRFKRTCEKAGVLAETRKREFYEKPTQERKRKRAAAVKRHLRRLSRDTSRRTRLY
>NZ_CP008884.1|WP_019464948.1|1227303_1228329_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MLGIETSCDETGVALLRWEQDAPGNGLLSHTLYSQIKLHAEYGGVVPELASRDHVRKLLPLVREALGQAGLAPADLGGVAYTAGPGLVGALLVGASAARAMAWALGVPAIGVHHMEGHLLAPLLEEDPPEPPFVALLVSGGHSMLVEVKGIGDYKILGDTLDDAAGEAFDKTAKLMGLPYPGGPALAKLAEQGRPGTFRFSRPMTDRPGLDFSFSGLKTQVLLAWQQSDQSEQTRADIARAFEEAIVDTMIIKCRRALQASGAKRLVIAGGVGANKRLRTELAAAGEKDGFKAYFPRLAFCTDNGAMIALAGAIRLAHGQHQDESVQVFPRWDLETLPPAV
>NZ_CP008884.1|WP_019464949.1|1228439_1228799_+|dihydroneopterin-aldolase
MDIVFIEDLRIDAVIGIYDWERRVRQTLSFDIEMAFDNTLPAASDDIALTLNYKDVSKRLIDYVGASSFGLVETLAERCAAIIREEFGVAWVRLKLSKPGAVRGAKSVGVRIERGTRPQ
>NZ_CP008884.1|WP_019464950.1|1228811_1229294_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MARVYLSLGSNVEPVRYLNAALDELRARFGALAVSPAYRSQSVGFDGADFVNLAVGLDTELSPEALNEWLHALEDRHGRRRDVPRYADRTLDVDIVLYDDLVRQGEGHLDIPRKELRHAFVLKPIADIAPELRHPVTGLTMQALWEAFPAESEPLQLQRL

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Crispr_ID: NZ_CP008884_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008884_2

3854931-3855030

Unclear

Consensus_repeat	Method
TACACCACCGGGGCCGGCGCGTAATAGACCG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP008884_2

>merge|NZ_CP008884|2|3854931-3855030|CRISPRCasFinder
TACACCACCGGGGCCGGCGCGTAATAGACCGGGGCCGGCGCGTAGTACACCGGCGGCGGGGGCGGTGCGTACACCACCGGGGCCGGCGCGTAATAACCGC

>NZ_CP008884|2|2|3854931-3855030|CRISPRCasFinder
TACACCACCGGGGCCGGCGCGTAATAGACCG	GGGCCGGCGCGTAGTACACCGGCGGCGGGGGCGGTGCG
TACACCACCGGGGCCGGCGCGTAATAACCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008884.1\|WP_019464508.1\|3859674_3860067_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378182
NZ_CP008884.1\|WP_026033794.1\|3851212_3852322_+\|calcium:proton-antiporter	unknown	unknown	gnl\|CDD\|223464
NZ_CP008884.1\|WP_038579956.1\|3844660_3845050_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225197
NZ_CP008884.1\|WP_026033955.1\|3845231_3845843_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP008884.1\|WP_026033793.1\|3853326_3854577_-\|ergothioneine-biosynthesis-protein-EgtB	unknown	unknown	gnl\|CDD\|274581
NZ_CP008884.1\|WP_019464504.1\|3863872_3865054_-\|formate-dependent-phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|236454
NZ_CP008884.1\|WP_019464512.1\|3855289_3857497_-\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl\|CDD\|236981
NZ_CP008884.1\|WP_019465452.1\|3843249_3844158_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP008884.1\|WP_019465451.1\|3842683_3843202_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377144
NZ_CP008884.1\|WP_019464511.1\|3857493_3858015_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|226101
NZ_CP008884.1\|WP_019464510.1\|3858097_3858664_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NZ_CP008884.1\|WP_019464517.1\|3850732_3851155_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319943
NZ_CP008884.1\|WP_019464509.1\|3858723_3859587_+\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|224857
NZ_CP008884.1\|WP_019465453.1\|3844271_3844664_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319924
NZ_CP008884.1\|WP_019464503.1\|3865200_3866703_+\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628
NZ_CP008884.1\|WP_026033791.1\|3860964_3862002_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP008884.1\|WP_019464507.1\|3860148_3860859_+\|arginyltransferase	unknown	unknown	gnl\|CDD\|234939
NZ_CP008884.1\|WP_019465456.1\|3846043_3849499_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_CP008884.1\|WP_019464505.1\|3862208_3863732_-\|FMN-binding-glutamate-synthase-family-protein	unknown	unknown	gnl\|CDD\|239202
NZ_CP008884.1\|WP_019464515.1\|3852343_3853330_-\|L-histidine-N(alpha)-methyltransferase	unknown	unknown	gnl\|CDD\|274579

Protein	Function_ID	Function_description	E-value
NZ_CP008884.1\|WP_019464508.1\|3859674_3860067_+\|hypothetical-protein	gnl\|CDD\|378182	pfam09413, DUF2007, Putative prokaryotic signal transducing protein. This is a family of putative prokaryotic signal transducing proteins of Pii-type.	0.00880237
NZ_CP008884.1\|WP_026033794.1\|3851212_3852322_+\|calcium:proton-antiporter	gnl\|CDD\|223464	COG0387, ChaA, Ca2+/H+ antiporter [Inorganic ion transport and metabolism].	4.52399e-75
NZ_CP008884.1\|WP_038579956.1\|3844660_3845050_-\|hypothetical-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	7.92058e-21
NZ_CP008884.1\|WP_026033955.1\|3845231_3845843_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.24911e-07
NZ_CP008884.1\|WP_026033793.1\|3853326_3854577_-\|ergothioneine-biosynthesis-protein-EgtB	gnl\|CDD\|274581	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB. Members of this family include EgtB, and enzyme of the ergothioneine biosynthesis, as found in numerous Actinobacteria. Characterized homologs to this family include a formylglycine-generating enzyme that serves as a maturase for an aerobic sulfatase (cf. the radical SAM enzymes that serve as anaerobic sulfatase maturases). [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	0
NZ_CP008884.1\|WP_019464504.1\|3863872_3865054_-\|formate-dependent-phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|236454	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase.	0
NZ_CP008884.1\|WP_019464512.1\|3855289_3857497_-\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0
NZ_CP008884.1\|WP_019465452.1\|3843249_3844158_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	6.20432e-42
NZ_CP008884.1\|WP_019465451.1\|3842683_3843202_+\|hypothetical-protein	gnl\|CDD\|377144	pfam03843, Slp, Outer membrane lipoprotein Slp family.	1.92887e-40
NZ_CP008884.1\|WP_019464511.1\|3857493_3858015_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|226101	COG3571, COG3571, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	1.80147e-05
NZ_CP008884.1\|WP_019464510.1\|3858097_3858664_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	3.82135e-36
NZ_CP008884.1\|WP_019464517.1\|3850732_3851155_+\|hypothetical-protein	gnl\|CDD\|319943	cd08355, TioX_like, Micromonospora sp. TioX and similar proteins. Micromonospora sp. TioX is encoded by a gene of the thiocoraline biosynthetic gene cluster. Thiocoraline is a thiodepsipeptide with potent antitumor activity. TioX may be involved in thiocoraline resistance or secretion. TioX belongs to vicinal oxygen chelate (VOC) superfamily that is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	9.09341e-28
NZ_CP008884.1\|WP_019464509.1\|3858723_3859587_+\|acyl-CoA-thioesterase-II	gnl\|CDD\|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	8.40176e-130
NZ_CP008884.1\|WP_019465453.1\|3844271_3844664_-\|VOC-family-protein	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.09948e-39
NZ_CP008884.1\|WP_019464503.1\|3865200_3866703_+\|transglutaminase-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.9593e-17
NZ_CP008884.1\|WP_026033791.1\|3860964_3862002_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.66881e-177
NZ_CP008884.1\|WP_019464507.1\|3860148_3860859_+\|arginyltransferase	gnl\|CDD\|234939	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional.	4.67735e-114
NZ_CP008884.1\|WP_019465456.1\|3846043_3849499_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP008884.1\|WP_019464505.1\|3862208_3863732_-\|FMN-binding-glutamate-synthase-family-protein	gnl\|CDD\|239202	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.	5.68483e-159
NZ_CP008884.1\|WP_019464515.1\|3852343_3853330_-\|L-histidine-N(alpha)-methyltransferase	gnl\|CDD\|274579	TIGR03438, conserved_hypothetical_protein, dimethylhistidine N-methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	1.44025e-151

>NZ_CP008884.1|WP_026033793.1|3853326_3854577_-|ergothioneine-biosynthesis-protein-EgtB
MTLAQSAVHAEALMLRFRRVRSRSMALCATLTPEDMMVQSMPDASPTKWHLAHTTWFFERFVLERDPAYHPAHPEWHYLFNSYYQTVGPMHARPRRGLLSRPGAAQVRAYREQVDEAICEWLARGVDATTADIIELGLEHEQQHQELLLTDIKHAFFSNPLLPAFTTPVASSATASVPMTFLPGREGVVEIGHRGHEFAFDNESPRHRSLLQSHAVANRPVTNAEYAEFIHDGGYREPSLWLSEGWDTVCREQWQRPFYWQEDLSSEFTLAGVQPIDPDAPVSHVSYFEADAFARWAGARLPTEAEWESAAAGLPVQGNLLDAMVFHPQAATAGEGMLQMFGDVWEWTASPYVSYPGFKPWAGALGEYNGKFMCGQWVLRGGSCATPREHLRATYRNFFPPHARWQFMGIRLGQDR
>NZ_CP008884.1|WP_019464515.1|3852343_3853330_-|L-histidine-N(alpha)-methyltransferase
MSVQAFEIRDDDRRPPVDDLLGIVQRGLRARPKRLPSWLFYDERGSQLFEAICEQPEYYLTRCEIALMDAHAGDIADVLGEDVRLVEYGSGNAIKTRMLLEHLHAPVSYVPVEISHEPLRNSMQALNERFPAVPVQPLHADFTRALRLPIPPRAPRRTVIYFPGSTIGNFEARDAAELLRKMRNEMGDNGGILIGADLKKDTHTIEAAYNDRAGITAEFTLNMLVRLNREIGSDFDLASFRHRAHYNAMAGRIETFLVSTRDQKVRVGKQQVNFGAEEAMQVEYSCKYSPEDFAALAGKAGLAVAHEWTDPDGMFAVYYLVRTGARPA
>NZ_CP008884.1|WP_026033794.1|3851212_3852322_+|calcium:proton-antiporter
MKMLIRPAIAWATVALFLVFGSDWMQHLSRHDIGLSLFAWLFFVIVWGSFGVVHEAEELAGLLGEPVGTLVLTLSIVLIEVVLISAVMLGAGDTATLARDTMFAVLMIVLNGVVGLGLLVGGIRHHEQAYNLHGASAFLAVIIPLATIALVLPNFTTSTSDGSLTPVQAVSFSILTIGLYGLFLWLQTGRHKGYFVAPRSDTDENVPEDLPPPPRRPRKGEMLFHLLLLLVNILPIVILSKSLAKVLDYGIAATGAPQSLGGIIIAMLVFTPEGISALIAIRRDQLTRAINLCLGGAASTVGLTVPAVLAIGLFTGKPVVLGLPSASMVLLASTLVLSTLTFSGWRTTMLEGAVHLSMFVVFLVLVFSP
>NZ_CP008884.1|WP_019464517.1|3850732_3851155_+|hypothetical-protein
MITNRSMPPGIIIPELAYPDVLEAAAWLCRALGFRERLRIADHRVQLTYEGCSIVVTELPNHGQTVDHAHAVMVHVADVDQHHARARAAGARVLQPPTDYPYGERQYSLEDIGGHRWKFSQSIADADPAEWGGTLMTESP
>NZ_CP008884.1|WP_019465456.1|3846043_3849499_+|transcription-repair-coupling-factor
MTKSIPHPSLPTSPKQRRFWTSPRGSSRALLVAEAARSHSGLLVAVTRDTQRAHALEDELRVFAGNLPVLHFPDWETLPYDVFSPHPDIVSQRIATLYQLPNVQRGVLVVPIATLMQRIAPRSHITGAGLVVRKKQKLDLAAEQRRLEAAGYRNVPQVGEPGDFAVRGALIDIFPMGAAEPYRIELFDDEVESIRSFDPETQRSQQQVDHIELLPAREFPLTENAAKDFRTRLRERFPIDVRRCPLYQDMKEGVTPGGIEYYLPMFFEQTATLFDYLADNAVFLLGEGALESADQFWTQTGERYDQRAHDIERPVLPPAELYLQPELLREQLNKRLRVELVESSHEHALPSGTQPAPELPLNRKGEEPGTSLRHFLSSYPGRVLIAADSAGRREALIEQLASAGLKPDTVEGWPAFLAGADKLRLAITIAGLEQGFALNDPAVTVLTERELFGERVRTERKRRRGAARDPESIIRDLTELTIGAPIVHVDHGVGRYQGLVSMELGGMEGEFLTIEYAKGDKLYVPVAQLGLVSRYTGTAPELAPLHSLGGDAWERARRKAAEKVRDVAAELLAIYAQREARGGESMPIDRQMVEEFGASFPFEETPDQEQAIDSVLKDLAAPRAMDRVICGDVGFGKTEVALRAAFAAATAGRQVAVLVPTTLLAQQHYRNFADRFADWPVKVDVLSRFKSSKEVNEALKRLGDGQVDVIVGTHKLLAPDIKFKNLGLVIVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMSGLRDLSLIATPPAHRMAVRTFIAQWEPALIREAFQRELQRGGQVYFLHNEVDTIERAARELEELIPEARIGVAHGQMAERELERVMADFHRQRFNVLVCTTIIETGIDIPTANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRKAMTADAEKRLEAIASLEELGAGFTLATHDLEIRGAGELLGDEQSGQIQEIGFGLYTELLERAVRALKSGKLPDFDLSSEHETEVELHLPALIPDDYLPDVHTRLTLYKRIASARNEDHLRDLQVEMIDRFGLLPDPAKQLFAIAQLKLMATPLGIRKLDFGANGGRITFRDKPEVDPMAIIRLIQGQPRVYKLDGQDKLKVNLELPGATERIRAAQEVLVQLGARRPG
>NZ_CP008884.1|WP_026033955.1|3845231_3845843_+|GNAT-family-N-acetyltransferase
MTPAIDYSNSRHALVPARSTERFARPRLVEVSKAPQGELVHTHDGRALYLRGIEPGDLAALKRQFTRLSPEDIRRRFLHCMGELPDSMAQRLVNIDPARETAFVLMDETVKPAEMRGVGRIFVDEAANSAEFSVLVEHDWARQGLGALLMQRLVDDCRRRGLSEIWGYVLLENRPMLHLCKDLGFVRRLSPEEPGTTQISLQL
>NZ_CP008884.1|WP_038579956.1|3844660_3845050_-|hypothetical-protein
MAAATKGMTPRQAELLCAGWPGVTMDVKWGHELVFSVGGKMFLVMPMEGGRLAFKVPDERFLELSDQPGIIAAPYLARARWVSVVEPQRFATRELHEHIHTAYGLVRARLTKKLQRELGEWPLPEEKRK
>NZ_CP008884.1|WP_019465453.1|3844271_3844664_-|VOC-family-protein
MKQYIGSIALVVADYDDAIAWYTRVLGFTLVEDTDMGGGKRWVVVAPPGSGETRVLLAKATTPEQSARIGDQTGGRVFLLLHTDDFWRDYRRMEAAGATFCEAPREEAYGTVVVFQDLYGNKWDLLQVKG
>NZ_CP008884.1|WP_019465452.1|3843249_3844158_+|cation-diffusion-facilitator-family-transporter
MSGHANSLRAILLALGANVAIFLSKLVAALITGSGAMLAEAVHSLADCGNQGLLLFGMRQAERPPTDDHPLGWGRALYFWSFLVAMLLFSVGGMFSIYEGIHKLSHPEPLKWPWLAIGVLGFGVVAESISMHGCLKEVNKAREGRSLWRWFHETRSSELLVIFGEDLAALIGLAVALVAVLATMITGNLLYDAAGTIVIGVLLVVVAIAVASEVKDLLIGQGVEPRRREELIAFINARPEVDVVLNVITLQMGPDVMVAVKARMSPAPDQTALVQAINSVERAMKAQFPDIRWSFFEPDITD
>NZ_CP008884.1|WP_019465451.1|3842683_3843202_+|hypothetical-protein
MNQHITHTLLRSAVATGLLALAACAPAPIYKPSPSTVATAPNIVAQSPDRFADADVIWGGQVVEVRNLADHSEVEIVGYPLDSSQRPKLANNGGWGRFIAVMPGYVESFDYPTGSLITLTGHLSGARNGKVGEADYVFPLVSVAQSHRWTADEMNAGKSNVSFGIGVGGVIR
>NZ_CP008884.1|WP_019464512.1|3855289_3857497_-|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MSAFFATCPKGLEYLLRDELVALGADDVREALAGVHFSGTLETAYRACLWSRLASRVLMPLAEFDAATDDALYGGVQSIDWSKHLGPRATLAVDANSAQSKLTHSQFIAQRVKDAVVDQFRQRDGSRPDVDTDEPDVRINLRLRRDRATLSIDLAGAPLHRRGWRELQGEAPLKENLAAAMLLRARWPDIYAEGGALLDPMCGSGTLLIEGAWMAADVAPGLHREYYGFLGWAQHDIALWRGLLDEARQRAETGLRALRACFFGSDADARMVQTAKRNAQEAGVAGFLTLDKHDVTHVSPPPGVARGLVITNPPYGERLGDRGEMPRLYRTIGETLRERFAGWRAAVLAGDAELGQAIPLRAEKKYALYNGALETVLLIFELHARSETPREVKPLSEGAQMLRNRLEKNLRHLRKRLEREGIHCWRAYDQDLPEYAAAVDVYGDEGGTSWLHIQEYRAPAEIPVETARQRLREIVRVAGEVLGVPRDRIALKTRERGKGGSKYGQFDQRGEFVEVDEGSLRFLVNLTDYLDTGLFIDHRLVRAKVRELASGQRFLNLFAYTATASVYAAAGGARDTTSVDLSATYLDWASRNLALNGFTGGKHRLMQADAMAFLRQERDRYGLIYVDPPTFSNSKRAEDFDVQRDHVPLLLACGERLNRDGVIVFSNNFRRFKLDHEALAERFRIEDWSAPSIPFDFTRRSDIHGCWLLRLHTQEATGESPWGGTVNHVRNQGRR
>NZ_CP008884.1|WP_019464511.1|3857493_3858015_-|alpha/beta-fold-hydrolase
MRGQIILSHGSDSGPDATKVSVLAAFAESLGWKTQRPDYRTDDLPGYAGSVDPRIQRLVAAIDTLDTPPVLVGSSMGSFVSGLASLQRPVAGLFLLATPSEIPGYRQAFDVAEGVPSLLYHGWRDDICPPEGVLAFAGRRRLPLIVVDDDHRLSDSIDRIVEQFGLFLTGLAA
>NZ_CP008884.1|WP_019464510.1|3858097_3858664_+|N-acetylmuramoyl-L-alanine-amidase
MPLTIIDQPLPYVSLLPERPAGAVDMVVIHCTELPDLATAREYGERVLYDSGAGASGHFYIDRDGSIHQYVPATRVANHVRGHNPNSIGIELVNLGRYPHWWDSRQQTMTEPYTPAQLAALRALLAELKHDYPNLRLIAGHEDLDTARLPASNDPTVEVPRKLDPGPLFPWPEVLQGSGLERVTAPGR
>NZ_CP008884.1|WP_019464509.1|3858723_3859587_+|acyl-CoA-thioesterase-II
MTETNVRELVDLLELERLEDNLFRGQSRDIGTHFVFGGQVLGQALSAAQRTVDAERAAHSLHAYFLRAGDINAPIVYSVERTRDGGTFSSRRVVAIQHGQPILNGSISFQVPETGFEHQSSMPEVPMPEDIEPMRPLPPEQLAKLPEKLQRWLGVDAPFEFRHVWPQDKLHPVKRPPIQHIWFRLTAPVGDSPELHRSLLAYASDFNLIGTATLPHGISYYTHNVQMASLDHALWFHRPFRTDEWLLYSFDSPTAQGARGLARGQIFTRDGQLVASTAQEGLIRLRG
>NZ_CP008884.1|WP_019464508.1|3859674_3860067_+|hypothetical-protein
MRQLYTSPRQENIDRVAAMLAEQGIECTIENRSNYRRPSYQRFSYSQRNEDRDNWAQVWVTKADDYTRARTLLKELGIEPVVRHGEELAAARNPTPDMRRQSVATRSRRIVLLAVAGAFVVLMLRYMGVI
>NZ_CP008884.1|WP_019464507.1|3860148_3860859_+|arginyltransferase
MRSDRVRLFQTLPHACGYFAERTAQNLVIDPAAPQLDQLYGPALERGFRRAGGHLYYPYCTNCRACTPCRIDVQRFTPDRSQRRCLKRNEDVQVIESMAGYNAERHALYERYLRQRHPGGGMDEADASDFRRFLTAPWSPTMFLEFRQGSRLLGVAVTDVCLQGLSAVYTFYDPDETARGLGTFAILQQVALAKRRGLPWIYLGFWIAGHPKMDYKRKFRPLQIRTSEGWVEMTEP
>NZ_CP008884.1|WP_026033791.1|3860964_3862002_-|alcohol-dehydrogenase-AdhP
MPPRMMKAAVAHRFGEPLRIEEVPVPVPARGEVLVKIVCTGVCHTDVHAVDGDWPVKPQPPFIPGHEGVGVVAALGEGVENLKVGDPVGIAWLHDACGHCEYCITGWETLCETQHDSGYSVNGSFAEYAIGNAAYVARLPDDVDFAAMAPVLCAGVTTYKGIRETEARPGEWLAVSGIGGLGHLAIQYATAMGLQVVAVDVADDKLALARRLGASATVDARQPGAVEEVLDVTGGGAHGVLVTAVSPPAFSQALGFTRRRGTMSLVGLPPGDFATPIFDVVLKRLTIRGSIVGTRKDLAEAVAFAAAGKVVPTIERRKLEDVNDVLQGLREGHIQGRVVLDIASA
>NZ_CP008884.1|WP_019464505.1|3862208_3863732_-|FMN-binding-glutamate-synthase-family-protein
MEPSGFAHWLVVVVETFAALFLLLLALLVVVIGVVWLVDRNQTSNSVLRNFPVIGHFRYWFLHLGEFFRQYLYSSDREELPFNRAQRMWVYRAAKNVDNTNAFGSTRDLRGEGVPFFVNAPFPALGEKHVKPRPVTLGPYSRQPYQHAAFFNISAMSFGALSAPAVRALSHGAKKAGIWMDTGEGGLAPYHLEGGCDIIFEIGTAKYGVRTPDGKLDDDKLLAICAHEQVKMVSIKLGQGAKPGMGGLLPAAKVTPEIAAIRGIPVGEDSQSPNRHLDIGNVQELMDAIHHIRELTGKPVGFKAVFGGVDWIADLCDEVKKRGIESAPDFIIVDGSEGGTGAAPQTLMEGVGLPLHEALPALVDLLVVKGLRDRIKVICSGKCITAYDVAWALSMGADFVNSARGFMLALGCIQSLQCNRNTCPTGITTQNPKLQRGLVVADKSERVAHYATNVMQEVGIIAHSCGVEEPRQLNRTHCRVVGDDGLSVPLVKLYPYPVVPQAPLPHG
>NZ_CP008884.1|WP_019464504.1|3863872_3865054_-|formate-dependent-phosphoribosylglycinamide-formyltransferase
MKPFGTPYSDHALRVLLLGSGELGKEVAIELQRYAVEVIAVDRYADAPAMQVAHRSHVIDMLDGAALRAVIEQEQPDLVVPEIEAIHTPTLVELEKGGLRVIPTARAAWLTMDREGIRRLAAEELKLPTSRYRFCDTEAEYRDAVAAIGLPFVIKPVMSSSGKGQSLVREEGELQHAWEYAQSGGRAGKGRVIVEGFVDFDYEITLLTVRHKDGVSFCAPIGHRQEDGDYRESWQPQPMSPAALAEAQRQAEAITGALGGWGVFGVEFFVKGDSVIFSEVSPRPHDTGLVTLVSQDLSEFALHARAILGLPIPVIRQLGPSASCAVLVEGEGAAPRYHGVADALKEADTQLRIFGKPTVKGRRRMAVTLARDESVEAAKAKAIRAAKALRIEL
>NZ_CP008884.1|WP_019464503.1|3865200_3866703_+|transglutaminase-domain-containing-protein
MRKWLAALSMAFALSPSPALVARAVDAAPATDTTWMTVLLAGRKIGHLRIDRSRDDHAVTTTQDLQIELDRGSGITPMGVLTRSTETLDGQPLGFYARSSLSSSDSIVDGERQADGSYAVTSTVGGLPTRSTLSWPAGALLSDGQRRAMAVATRQTGHYTLDLFDPVTREVASVDLEVLGDESVQLPDGPEWLSHQREVVQTPRGVQRMELWINARGETRKGSLDMLGHELVMLACSQACALAPVQDIDLLRAAMVDSPQPLSAAMRQGFLRYLIHTGDDDTRPVIATDEQRVTPLGHGDWVVEIGDAAAGGQATPTLEDTQANAWLQADAPEVRALAAKAAGGATTAQATMPRLRDFVSRYIDRHDKDGGYASAVEITRTHEGDCKAYAVLLAALARAEGIPARVVTGMVYVDHYAGNARVFVPHAWVQAWVDGRWQSFDAALGRFDSAHIALDSGDGDPWHFANLSNLLGQLRIAEVAPAPGISPAMLRGAAVATRDW

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Crispr_ID: NZ_CP008884_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP008884_3

4061119-4061223

Orphan

Consensus_repeat	Method
GCCGGCGGAAGCCGGCTTTTTTGTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP008884_3

>merge|NZ_CP008884|3|4061119-4061223|CRISPRCasFinder
GCCGGCGGAAGCCGGCTTTTTTGTGTTTGGGAAAAGCGGGCTGGCGGAAGCCGGCTTTTTTGTGCTTTGGGAAAAGCGGGCCGGCGGAAGCCGGCTTTTTTTTGT

>NZ_CP008884|3|3|4061119-4061223|CRISPRCasFinder
GCCGGCGGAAGCCGGCTTTTTTGTGT	TTGGGAAAAGCGGGCTGGCGGAAGCCGGCTTTTTTGTGCTTTGGGAAAAGCGG
GCCGGCGGAAGCCGGCTTTTTTTTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP008884.1\|WP_019466909.1\|4049469_4050276_-\|3-oxoadipate-enol-lactonase	unknown	unknown	gnl\|CDD\|131480
NZ_CP008884.1\|WP_019466915.1\|4057823_4058777_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP008884.1\|WP_019465501.1\|4063867_4064182_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP008884.1\|WP_019465493.1\|4073890_4074673_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|180270
NZ_CP008884.1\|WP_019465503.1\|4062340_4063420_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237047
NZ_CP008884.1\|WP_019466912.1\|4052930_4053890_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP008884.1\|WP_144240853.1\|4049143_4049443_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP008884.1\|WP_019466910.1\|4050393_4051305_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP008884.1\|WP_017460878.1\|4060817_4061081_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|376586
NZ_CP008884.1\|WP_081500660.1\|4064279_4065035_-\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|378261
NZ_CP008884.1\|WP_038580001.1\|4058946_4060554_-\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|223800
NZ_CP008884.1\|WP_019465494.1\|4073002_4073731_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_CP008884.1\|WP_019465502.1\|4063590_4063848_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP008884.1\|WP_019466913.1\|4053966_4054458_-\|lipoprotein-signal-peptidase	unknown	unknown	gnl\|CDD\|234739
NZ_CP008884.1\|WP_019466914.1\|4054723_4057591_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NZ_CP008884.1\|WP_019465495.1\|4071208_4072090_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP008884.1\|WP_019465498.1\|4068100_4068607_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP008884.1\|WP_038579996.1\|4051613_4052486_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223267
NZ_CP008884.1\|WP_019465496.1\|4070331_4071087_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NZ_CP008884.1\|WP_050997918.1\|4068747_4070169_+\|DUF4139-domain-containing-protein	unknown	unknown	gnl\|CDD\|227628

Protein	Function_ID	Function_description	E-value
NZ_CP008884.1\|WP_019466909.1\|4049469_4050276_-\|3-oxoadipate-enol-lactonase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	1.19924e-90
NZ_CP008884.1\|WP_019466915.1\|4057823_4058777_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	4.3942e-137
NZ_CP008884.1\|WP_019465501.1\|4063867_4064182_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	2.24744e-54
NZ_CP008884.1\|WP_019465493.1\|4073890_4074673_+\|enoyl-CoA-hydratase	gnl\|CDD\|180270	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase.	6.72491e-98
NZ_CP008884.1\|WP_019465503.1\|4062340_4063420_-\|GTPase-ObgE	gnl\|CDD\|237047	PRK12298, obgE, GTPase CgtA; Reviewed.	0
NZ_CP008884.1\|WP_019466912.1\|4052930_4053890_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NZ_CP008884.1\|WP_019466910.1\|4050393_4051305_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.00555e-31
NZ_CP008884.1\|WP_050997918.1\|4068747_4070169_+\|DUF4139-domain-containing-protein	gnl\|CDD\|227628	COG5316, COG5316, Uncharacterized conserved protein [Function unknown].	5.8622e-29
NZ_CP008884.1\|WP_017460878.1\|4060817_4061081_+\|30S-ribosomal-protein-S20	gnl\|CDD\|376586	pfam01649, Ribosomal_S20p, Ribosomal protein S20. Bacterial ribosomal protein S20 interacts with 16S rRNA.	6.73257e-25
NZ_CP008884.1\|WP_081500660.1\|4064279_4065035_-\|DUF2059-domain-containing-protein	gnl\|CDD\|378261	pfam09832, DUF2059, Uncharacterized protein conserved in bacteria (DUF2059). This domain, found in various prokaryotic proteins, has no known function.	2.30536e-12
NZ_CP008884.1\|WP_038580001.1\|4058946_4060554_-\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|223800	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only].	3.51966e-159
NZ_CP008884.1\|WP_019465494.1\|4073002_4073731_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	2.51272e-58
NZ_CP008884.1\|WP_019465502.1\|4063590_4063848_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	9.8878e-51
NZ_CP008884.1\|WP_019466913.1\|4053966_4054458_-\|lipoprotein-signal-peptidase	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	1.65987e-59
NZ_CP008884.1\|WP_019466914.1\|4054723_4057591_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP008884.1\|WP_019465495.1\|4071208_4072090_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	6.50689e-80
NZ_CP008884.1\|WP_019465498.1\|4068100_4068607_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	2.63681e-36
NZ_CP008884.1\|WP_038579996.1\|4051613_4052486_+\|hypothetical-protein	gnl\|CDD\|223267	COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis].	7.27501e-10
NZ_CP008884.1\|WP_019465496.1\|4070331_4071087_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	5.29036e-45

>NZ_CP008884.1|WP_017460878.1|4060817_4061081_+|30S-ribosomal-protein-S20
MANIKSAKKRARQSEQRRLRNVSARSMVRTALKKVVKAIEAKDKAAAVEAFAAAQPVMDRYAARGLIHKNKAARHKSRLNAKIRELA
>NZ_CP008884.1|WP_038580001.1|4058946_4060554_-|murein-biosynthesis-integral-membrane-protein-MurJ
MKSPSMFRGLLSFSSMTMISRVLGLVRDMSINATFGANAATDAFWVAFRIPNFMRRLFAEGSFSTAFVPVFTEVKEKRPHEDLKQLMSRVSGTLGGVLLVITALGVIFAPQVAALFSQGAADTPEKFALTAQLLRLTFPFLLFVSLTALCGGALNSFHKFALPALTPVILNLCMIGGALWLSKFVHPPIMAMGWAILLAGLLQLLFQLPSLRGLDLLTLPRWGWSHPDVRRILTLMVPTLFGSSIAQINLLLDTVIAAYLMTGSQSWLSQADRFLELPLGLFGVALGTVILPSLSRHHVTTDKEGFSKALDWGLRTTLLIAVPAMFALMLLARPLVATLFQHGQFTPFDTRMATLSITALSFGLPAFALVKVALPAFYSRQDTKTPVRAGVASLVANMVMNVIFVALLYVLWATPEQRQLPWLDGIAAVPGLHMALGMASAIASYINLGLLWHWLRRAGVYQRQPGWARHMLRLVLSCAVMVAVLMAGMHLWPDWTDADKWTRVWRLAVLVVAGGGAYVVTLFAAGFRLRELRGV
>NZ_CP008884.1|WP_019466915.1|4057823_4058777_-|bifunctional-riboflavin-kinase/FAD-synthetase
MMRLSRDVAGSTLAPGGSVVAVGAFDGLHRGHQALLAEVRERADALGLTPIVVSFEPLPRAFFSPEPVPRLSSVREKLRGFDAAGMEQVLLLRFNRALTSMSADEFVRQVLVDRLNAREVWVGADFRFGHKRSGDVAMLERVGPGFGFTARTMPSVLLDGARVSATRVRMLLSAGEFSGAAPLLGRPFVIDGKVEYGKQLGRQLGYPTANIHLRDRTSPVHGIFAVRVGLGESECSWPGVASLGVRPTVNEVPEPLLEVHLFDFEGDLYGQRMAVEFVAKLRDEQKFDNLDDLTVQMAKDARQARELLGMNPRLSEA
>NZ_CP008884.1|WP_019466914.1|4054723_4057591_-|isoleucine--tRNA-ligase
MTQDYKNTINLPQTEFPMRGDLPKREPKWLADWQQVGRYAQIQERAANRDKVFVLHDGPPYANGAIHLGHAVNKVLKDVVVKSRLLAGFRAPYVPGWDCHGLPIEVAVEKKFGRVGDKLDAAAFRQKCREYAQQQIDLQRTDFKRLGVLGDWENPYRTMDFKYEADMVRALAKIVGNGHVVRGAKPVYWCFDCGSALAEAEIEYADKVSPAVDVAYDAVDAKALAQTFGVDAGDAIVAIPIWTTTPWTLPESQAVSLGGELEYALIEGPSRDGHRVLLVVASALVEKVAHRYGIDGEAKVLGHVAGQSLEGVLLKHPFYAREVPVLIGDHVSAEDGTGAVHTSPDHGVEDFVVSRKYGIETLNYTEARGTYRADTPVALDGTVIAGKHLWKANDEIVELLRRRGVLLAFAKIEHSYPHCWRHKTPVIFRTTPQWFISMEKEGLCNTALDAIKHVRWVPSWGEERIAGMVGDRPDWCISRQRTWGVPIALFIHKGTQEPHPDSVALLEQVAKRVEQGGIDAWYALDAAELLGDQAKDYEKVLDVLDVWFDSGVSHFAVVGQRPELQQGKASSYHVMYLEGSDQHRGWFQSSLLTSSAMFAKAPYNDVLTHGFTVDAQGRKMSKSLGNGIEPQDIMKNLGADILRLWICSTDYRNEMSLSDEILKRVSDTYRRIRNTARFLLGNLDGFDPAKHLVPVEQSLLLDQWAVQQAYDTQQAVMAAYDRYDFPEIVQRVQNYCTNELGALYLDITKDRLYTMPTESHGRRSAQSAMYRIAEALVRWLAPVLTFTAEEIWQHLPGERSESVLFETWYDGLSSTQGSPEQRRYWADLLAIRDTASRVLEGMRKGEQIGASLEAKLAIHADPAIVARYQPTASELRFFFITSDVRLDLAGGQPADAVLTELEGADVWVSATVSDAAKCVRCWHRRDDVGTHANHPELCDRCISNVDGPGEDRRWF
>NZ_CP008884.1|WP_019466913.1|4053966_4054458_-|lipoprotein-signal-peptidase
MKPKPNALNWLLLSAVVIVLDQLSKWWALAALQPAGTPHPVIPGFLNWTLAFNKGAAFSFLAAGDGWQRWFFVLLAVVISGVLVSWLSRTPRGDWKTALPVSLIVGGALGNLIDRLHASQVTDFIHVYFREWNYPVFNFADCGITVGAVALVVFGLFQGKSKA
>NZ_CP008884.1|WP_019466912.1|4052930_4053890_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MDILLANPRGFCAGVDRAIAIVERALESYGAPIYVRHEVVHNRYVVDKLRNDGAVFVEELHEVPDGATVIFSAHGVSKAVREEADQRGLKVFDATCPLVTKVHMEVARLGRTGRSVVLIGHEGHPEVEGTMGQWNPANKGEILLVESVEDVAALKPKFPHELSYVTQTTLSVDDTKAIIEALRSTFTDIEGPRKDDICYATQNRQDAVRRLAASVDLMLVVGSVNSSNSNRLRELAEKEGVRSFLIDGAEHIERSWLDGVTRIGLTAGASAPEKLVRDVIARLQSWGAGAVRELDGEPETITFALPKELRLVGGVSASL
>NZ_CP008884.1|WP_038579996.1|4051613_4052486_+|hypothetical-protein
MPHPVTHRLAIATSSMIPDIHPDDAHLATSLQRLGIETVACVWNDPRVDWTRYDAVLMRSTWDYFKHYAAFSAWLEKLPVPTINHKALLRWNSDKRYLPELAAQGIDIIPTSIVSGTHLRQRLAGMSGQEIVVKPTISGTAWHTARGKVGDAAFDQAIAQLPMAFEYLVQPFVPEVVSDGELSLLFFDGEFSHAVIKRPAAGDYRVQSEFGGTAQRVDPDAALIASAKRALTAVAALGHANVAYARVDGVMSQGQFLLMELEMIEPFLHLSDRPEAAERFAGNLRKRLTT
>NZ_CP008884.1|WP_019466910.1|4050393_4051305_+|LysR-family-transcriptional-regulator
MSAFTLHDLQCFDAVVKEGGFQAAAEVMNRSHPAVFAAVAKLERQLGLELLERGGYRVQLTAAGQSFHRRAQALLRELESLHAHTAQLAMGAESELRVVIGDLCPVPQTLRLLSRFFSQHPSTRLHLHFEAVTGPWERLFNDEADLIFHRVDKHDARTEWVDLCPVPMIPVAAPGFLPFRASRSIRREQLRELTQCIMRDTAQSPESRSYFVMEGAPQCTVADQLMKKEVILQGMAWGHLPRFLIEQELRDGSLISLAGRYLSGAVEELVVARRHDRPHGPVANQLWQLVQEHAAQWRTTPSH
>NZ_CP008884.1|WP_019466909.1|4049469_4050276_-|3-oxoadipate-enol-lactonase
MNDTTFITTGDGYRLAYRLDGTDDKPVLVLSNSIATTLHMWDGQIAALTPHFRVLRYDARGHGQSDAPAGAYSMDRLGRDVIELLDALGIERAHFLGLSLGGLVGQWLGIHAPERIDQLILSNTSARLGPPSEFDARIAALKTSPDMAAVAEAFLANWFPAPMLEANHPDVEPFRDMLLSTAPQGLAGSYAAVRDTDMRRTIALINRPTLVIAGRDDTVTLASHGEFIASTVPGARLVTMPAVHLPNVEHPDLYTRTVLDFLLEEKAA
>NZ_CP008884.1|WP_144240853.1|4049143_4049443_-|hypothetical-protein
MGAAGALASGQTRGAPIEPAAGMVDALSGEHGDGNILRSQSHLRQKSDKRKLCAISFVSIMAPLHTPSGGCIVVQDGTALRPLNAVSSAFALTCLAMEA
>NZ_CP008884.1|WP_019465503.1|4062340_4063420_-|GTPase-ObgE
MKFVDEAIIKVHAGDGGNGCISFRREKFIPFGGPDGGDGGSGGSVWLVADEGLNTLIDFRHQRSFKAERGQNGMGSQMYGKGGEDTFIRVPVGTVVTNVDTDETIGDLTQHGQRLLVAQGGKGGLGNIHFKSSVNRAPRKSTPGTPGDVRELKLELKLLADVGLLGFPNAGKSTFIRAVSAATPRVADYPFTTLHPNLGVVSLGTDQSFVIADIPGLIEGAADGAGLGIQFLRHVSRTRLLLHVVDIAPIDGADPVEQVHAIEQELEKFDPELLQRPRWLVMNKADVLPEDERKAVAEDVVQRLGWKEPWFLVSAIARENTMPVCQQVWQFLSEQQMAHEERTEMLPGDVRLRGEGHAE
>NZ_CP008884.1|WP_019465502.1|4063590_4063848_-|50S-ribosomal-protein-L27
MAHKKGVGSSRNGRDSNPKYLGVKVYGGQAIEAGNIIVRQRGTKFHAGTGVGLGRDHTLFALVDGTVEFKTRGENNRKFVSVVKG
>NZ_CP008884.1|WP_019465501.1|4063867_4064182_-|50S-ribosomal-protein-L21
MSYAVIKTGGKQYRVQQGDVLRVELLNAEEGAAFTFDQVLLVGAGESITVGAPTVAGATVSATVRKHGRADKVRIIKFRRRKHHKKQQGHRQHFTEVEITGINA
>NZ_CP008884.1|WP_081500660.1|4064279_4065035_-|DUF2059-domain-containing-protein
MGKLTRWGAAIALAMGVGQAMASSAPATEDQVRQLMEVVGLGKMLLQMNTQAVNTLQQSMPCVPTDFWQNYMNESQTQLFIGRLVPVWQRHFTSDEMNGLLKFYRSPLGQKVITEMPTTMAEANEAGQQWSHERSDQMVNELKHMGTLDSAGRCPAKVASSSAPEAAVAGAAALKAADAGSDEEEAKPAAKATTHAASHGKAPAKKTATKAAPKKTTAKPAAKTPAKTDTKAAPAKKVTKPAAATSGQSGQ
>NZ_CP008884.1|WP_019465498.1|4068100_4068607_+|acyl-CoA-thioesterase
MSSTETVPEKRTRSRKAEVQESTPAVTDNAQAPEAATGPLFVAPIGVRWRDLDAFNHVNNANYLTYLEEARLQWLQHVPGWFDEHSMPVLAASELNYRRPIEWPAQLNVELFCERLGNSSVTIAHRIVNAHDGSLYSDGKVVMVWMDPGTGKPVPLPQSIRDAAEAGA
>NZ_CP008884.1|WP_050997918.1|4068747_4070169_+|DUF4139-domain-containing-protein
MAAGTGAGAIAAPSSTTLTLYRSDDAALYSAGDSGSVHAGYAVAREPRQLDLKSGTQDISLGGLPQYLDPEAMALSVEGDAAQVISQRLRLGQGQNAALGSLIGQPVEVLATSGQPLASGTLLRADDGLLVQDASGRTSLIREYAAVRAAGSFQTGASLQMRVDAKRAGKAQAILSYTTSGLGWRAAYVGTLAPGDGCRMQFESRASIANRSGRDWNNVQLTLIAGEPRITKPVSGPRPMAFSVQAKMADGAMPEQSTLADYRTYTLPGAVDLPDGSVSQVPLYATRTIECERTSLYENGGGWVPPQPMIGQDFVPGGDSTGIVSTLQFHAFDSLPAGYLRVLTADRNGTPQFIGEGRINDTPKGSDARITLGQAFDLRGNRERTAFHVDKNGRTLDEAFRITLTNAGDSPRTVTVREHPQRWRQWTLVSSSSKPSAQTTDTLEFKVTVPANGKATLDYAVRYQWTADENPQG
>NZ_CP008884.1|WP_019465496.1|4070331_4071087_+|enoyl-CoA-hydratase/isomerase-family-protein
MLNLITHDAVTEINLARPPVNALNSELLRALRDAVDNAVAGGARGIVLSGMPGMFSAGADIPSLIGRDRGSVRAFWREFFHTSSKLAMSPVPVVAAITGHSPAGGAVLSLFCDYRVMAEGPFRIGLNEVQVGLVVPECIQMALRRIVGAYRAERLMVAGAMVDSAEALAIGLVDELTNIEQVVTRAVVWMQALIALPSHAMLTTRATARADLTTVWADPDKLPLDEFVDGYFHPEAQAVLEKLVARLKKKD
>NZ_CP008884.1|WP_019465495.1|4071208_4072090_-|sulfurtransferase
MTLRTTLIDVEELAALAPDEVLIVDCRFDLMAPGTGQRDVGKGERDYREGHIPGAVYASLDADLSDLSRKAEGLGRHPLPREEAFSHVLSRWGWREGTQIVCYDAASGSLAAARLWWLLRLAGIPGVAVLDGGYPAWVGAGKPVESGDVHRTPRPVSLHFDASLYTVDHASLRADPERLLLDARAVPRYRGEVEPIDPVGGHVPGALNRPFSENLRDDGRFKRADVLHKEFEAVLGTHSPQDVVHMCGSGVTACHNLLAMEHAGLTGSRLYAPSWSGWVSDASRPVAKGSEPG
>NZ_CP008884.1|WP_019465494.1|4073002_4073731_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MEEGMAQLRWLAYGILLWGVVAHAQDSSAPQGQSQVKLDKTKLSYAIGYQIGSQFANGDPDVDIPTLVRAIQDAYAKKRPAVPMRDMHDQLRELDEQMHTQALAQFRQAAETNARKSADYMERNKAKPGVIQLPSGIQYEVLKKGTGTKPVPEGSVVTVNFRAMLIDGTEFDSSWAHGSPVSFVVNNKVIPGWQEVIQRMHVGDLWKVTVPPSLAYGVKGDPPRIGPNETLVFEIELLEIKP
>NZ_CP008884.1|WP_019465493.1|4073890_4074673_+|enoyl-CoA-hydratase
MAYRNLEIANRGAVRTITVNRPDKLNALNRETLNELTLAFTQAAQDDAVRVVVLAGAGEKAFVAGADIAEMNGYTPVQAQGFSRAGQRLMSLVERLGKPVIARIQGFALGGGMELAMCCHLRVASEKAKFGQPEINLGLIPGFGGTQRLLRLAGRGAALELCLLGAPIPAQRAYELGVVTRVVAPEALDETVNAMADQLAAAAPLAAAGILDAILQGGETSIDQGLEFETQAFALAFSTEDMREGTTAFLEKRKADFKGR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP008884_2	2.1\|3854962\|38\|NZ_CP008884\|CRISPRCasFinder	3854962-3854999	38	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	330318-330355	7	0.816
NZ_CP008884_2	2.1\|3854962\|38\|NZ_CP008884\|CRISPRCasFinder	3854962-3854999	38	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	397871-397908	7	0.816

1. spacer 2.1|3854962|38|NZ_CP008884|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.816

gggccggcgcgtagtacaccggcggcgggggcggtgcg--	CRISPR spacer
gggccggggcgtagtagaccggcggc--ggacggcgcatc	Protospacer
******* ******** *********  **.***.**.

2. spacer 2.1|3854962|38|NZ_CP008884|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 7, identity: 0.816

gggccggcgcgtagtacaccggcggcgggggcggtgcg--	CRISPR spacer
gggccggggcgtagtagaccggcggc--ggacggcgcatc	Protospacer
******* ******** *********  **.***.**.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3144030 : 3227640

Gordonia_phage(25.0%)

plate,integrase

attL 3141127:3141146|attR 3172850:3172869

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3141127:3141146	attL	NA	NA	NA	NA
WP_019467558.1\|3144030_3145134_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_019467557.1\|3145222_3146104_+	DNA-binding protein	NA	NA	NA	NA
WP_144240827.1\|3146533_3146878_+	hypothetical protein	NA	NA	NA	NA
WP_157786214.1\|3146976_3148584_-	DUF4365 domain-containing protein	NA	NA	NA	NA
WP_019467554.1\|3148573_3149737_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_019467553.1\|3149733_3150438_-	hypothetical protein	NA	NA	NA	NA
WP_019467552.1\|3150427_3151561_-	hypothetical protein	NA	NA	NA	NA
WP_019467551.1\|3151766_3153437_+	hypothetical protein	NA	NA	NA	NA
WP_019467550.1\|3153433_3153925_+	hypothetical protein	NA	NA	NA	NA
WP_019467549.1\|3153974_3154511_+	hypothetical protein	NA	NA	NA	NA
WP_158407931.1\|3154557_3154770_-	hypothetical protein	NA	NA	NA	NA
WP_050997996.1\|3155162_3155996_+	three-Cys-motif partner protein TcmP	NA	NA	NA	NA
WP_019467546.1\|3156081_3157251_-	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_019467545.1\|3157395_3158688_-	three-Cys-motif partner protein TcmP	NA	NA	NA	NA
WP_026034322.1\|3158706_3159456_-	phage Gp37/Gp68 family protein	A0A2P1A0W3	Gordonia_phage	6.8e-60	46.2
WP_144240829.1\|3159950_3161258_+	hypothetical protein	NA	NA	NA	NA
WP_038579839.1\|3161260_3161575_+	hypothetical protein	NA	NA	NA	NA
WP_019467540.1\|3161574_3162105_+	hypothetical protein	NA	NA	NA	NA
WP_144240830.1\|3162116_3162785_+	hypothetical protein	NA	NA	NA	NA
WP_019467539.1\|3162896_3163991_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_081500772.1\|3164526_3165009_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_019467536.1\|3165258_3165753_+	hypothetical protein	NA	NA	NA	NA
WP_019467535.1\|3165805_3166180_+	hypothetical protein	NA	NA	NA	NA
WP_019467534.1\|3166212_3166695_+	hypothetical protein	NA	NA	NA	NA
WP_019467532.1\|3167714_3168548_-	sulfotransferase	NA	NA	NA	NA
WP_019467531.1\|3168549_3170226_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_019467530.1\|3170269_3178264_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
3172850:3172869	attR	NA	NA	NA	NA
WP_144240831.1\|3178368_3178635_+	hypothetical protein	NA	NA	NA	NA
WP_019467529.1\|3178879_3179812_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_144240832.1\|3180243_3180768_+	hypothetical protein	NA	NA	NA	NA
WP_100218305.1\|3180894_3183027_+	FUSC family protein	NA	NA	NA	NA
WP_019467526.1\|3183333_3183807_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_019467525.1\|3183971_3185090_+	alanine dehydrogenase	NA	NA	NA	NA
WP_038581068.1\|3185281_3186334_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_019467523.1\|3186365_3187463_-	hypothetical protein	NA	NA	NA	NA
WP_019467522.1\|3187469_3195965_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_019467521.1\|3195977_3197678_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_019467520.1\|3197797_3198127_-	hypothetical protein	NA	NA	NA	NA
WP_019467519.1\|3198123_3201798_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	Q462G4	Trichoplusia_ni_single_nucleopolyhedrovirus	1.5e-06	26.5
WP_019467518.1\|3201800_3202514_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_019467517.1\|3202510_3203260_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_019467516.1\|3203264_3206783_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_019467515.1\|3206786_3208112_-	type VI secretion system protein TssL	NA	NA	NA	NA
WP_026034321.1\|3208116_3209454_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_158407932.1\|3209575_3210163_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_038581073.1\|3210547_3211189_-	response regulator transcription factor	NA	NA	NA	NA
WP_100218308.1\|3211220_3212501_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_019467510.1\|3212550_3213090_-	hypothetical protein	NA	NA	NA	NA
WP_019467509.1\|3213100_3215107_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.0e-41	29.2
WP_050998002.1\|3215290_3216583_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_026034318.1\|3216681_3216969_-	type VI secretion protein	NA	NA	NA	NA
WP_019467506.1\|3217159_3218305_-	hypothetical protein	NA	NA	NA	NA
WP_019467505.1\|3218615_3218999_-	hypothetical protein	NA	NA	NA	NA
WP_144240833.1\|3219130_3220012_-	hypothetical protein	NA	NA	NA	NA
WP_019467503.1\|3220378_3221866_-	hypothetical protein	NA	NA	NA	NA
WP_019467502.1\|3221914_3224647_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	8.8e-81	30.4
WP_019467501.1\|3224770_3225793_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_019467500.1\|3225756_3227640_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_2

4612555 : 4625174

Escherichia_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038581460.1\|4612555_4613269_-	ABC transporter ATP-binding protein	A7J887	Paramecium_bursaria_Chlorella_virus	1.8e-06	27.5
WP_019467072.1\|4613271_4614081_-	ABC transporter permease	NA	NA	NA	NA
WP_038581463.1\|4614108_4615299_-	PLP-dependent transferase	A0A0B5JD48	Pandoravirus	2.3e-25	27.3
WP_026034234.1\|4615451_4616501_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.1e-79	47.3
WP_026034233.1\|4616497_4617382_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	1.3e-97	60.0
WP_019467068.1\|4617378_4617936_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.9e-52	53.6
WP_019467067.1\|4617932_4618883_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.2e-21	30.1
WP_026034232.1\|4618876_4620289_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	9.8e-52	30.6
WP_100218283.1\|4620333_4621674_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	1.8e-34	26.3
WP_019467064.1\|4621826_4623656_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HMK6	Paramecium_bursaria_Chlorella_virus	1.2e-121	42.0
WP_019467063.1\|4623803_4625174_-	pyridoxal-phosphate dependent enzyme	A0A1X9I5F1	Streptococcus_phage	2.0e-49	38.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP008884

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection