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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP003923 Bacillus lehensis G1 chromosome, complete genome 1 crisprs WYL,cas3,DinG,DEDDh,csa3 0 3 6 0

Results visualization

1. NZ_CP003923
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP003923_1 643825-644320 Orphan I-C
7 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP003923_1 1.2|643923|35|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT 643923-643957 35 KR080200 Mycobacterium phage AlanGrant, complete genome 55773-55807 6 0.829
NZ_CP003923_1 1.2|643923|35|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT 643923-643957 35 KR080194 Mycobacterium phage Vincenzo, complete genome 55803-55837 6 0.829
NZ_CP003923_1 1.6|644190|34|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT 644190-644223 34 MN693085 Marine virus AFVG_25M85, complete genome 62469-62502 8 0.765
NZ_CP003923_1 1.2|643923|35|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT 643923-643957 35 NC_006912 Streptomyces sp. FQ1 plasmid pFP1, complete sequence 39116-39150 9 0.743
NZ_CP003923_1 1.2|643923|35|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT 643923-643957 35 NZ_CP029602 Streptomyces sp. WAC 01438 plasmid unnamed1, complete sequence 34759-34793 9 0.743
NZ_CP003923_1 1.5|644124|34|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT 644124-644157 34 MN582104 Siphoviridae sp. ctvD11, complete genome 1906-1939 9 0.735
NZ_CP003923_1 1.6|644190|34|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT 644190-644223 34 MN693085 Marine virus AFVG_25M85, complete genome 2909-2942 9 0.735
NZ_CP003923_1 1.6|644190|34|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT 644190-644223 34 NZ_CP034684 Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence 71374-71407 12 0.647

1. spacer 1.2|643923|35|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT matches to KR080200 (Mycobacterium phage AlanGrant, complete genome) position: , mismatch: 6, identity: 0.829

tcaaattcgccgagcagcggcacctcgtacgcctc	CRISPR spacer
gcaaattcgcccagcagcggcacctcgtcgggctt	Protospacer
 ********** ****************  * **.

2. spacer 1.2|643923|35|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT matches to KR080194 (Mycobacterium phage Vincenzo, complete genome) position: , mismatch: 6, identity: 0.829

tcaaattcgccgagcagcggcacctcgtacgcctc	CRISPR spacer
gcaaattcgcccagcagcggcacctcgtcgggctt	Protospacer
 ********** ****************  * **.

3. spacer 1.6|644190|34|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT matches to MN693085 (Marine virus AFVG_25M85, complete genome) position: , mismatch: 8, identity: 0.765

attttttgcgcgtctttttttataggaggagtgt	CRISPR spacer
atcttttgcgcgtctttttttataaggatagcag	Protospacer
**.*********************.*.. **.. 

4. spacer 1.2|643923|35|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT matches to NC_006912 (Streptomyces sp. FQ1 plasmid pFP1, complete sequence) position: , mismatch: 9, identity: 0.743

tcaaattcgccgagcagcggcacctcgtacgcctc	CRISPR spacer
acgatctcggcgggcagcggcacctcgtacgggtt	Protospacer
 *.* .*** **.******************  *.

5. spacer 1.2|643923|35|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029602 (Streptomyces sp. WAC 01438 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

tcaaattcgccgagcagcggcacctcgtacgcctc	CRISPR spacer
acgatctcggcgggcagcggcacctcgtacgggtt	Protospacer
 *.* .*** **.******************  *.

6. spacer 1.5|644124|34|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT matches to MN582104 (Siphoviridae sp. ctvD11, complete genome) position: , mismatch: 9, identity: 0.735

ccttgaatgattttgtcaatggattcgccatata	CRISPR spacer
ccttcattgattttgtcaatggattgcagggatt	Protospacer
**** * ******************    . ** 

7. spacer 1.6|644190|34|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT matches to MN693085 (Marine virus AFVG_25M85, complete genome) position: , mismatch: 9, identity: 0.735

attttttgcgcgtctttttttataggaggagtgt	CRISPR spacer
atcttttgcgcgtctttttttataaggatatcag	Protospacer
**.*********************.*.. * .. 

8. spacer 1.6|644190|34|NZ_CP003923|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034684 (Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence) position: , mismatch: 12, identity: 0.647

attttttgcgcgtctttttttataggaggagtgt	CRISPR spacer
cacctttgggtgtctttttttataggagcccgcc	Protospacer
  ..**** *.*****************     .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 994998 : 1003412 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 2048965 : 2058397 10 Staphylococcus_phage(42.86%) NA NA
DBSCAN-SWA_3 2704055 : 2717528 12 Staphylococcus_phage(88.89%) tRNA NA
DBSCAN-SWA_4 2744008 : 2787343 63 Bacillus_phage(48.39%) terminase,portal,tail,integrase,head,protease,holin,capsid attL 2743773:2743826|attR 2787497:2787550
DBSCAN-SWA_5 3402796 : 3409238 7 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_6 3698599 : 3710175 9 Geobacillus_phage(85.71%) tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage