CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007744	Pectobacterium atrosepticum strain JG10-08 chromosome, complete genome	9 crisprs	csa3,cas3,DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,WYL	1	7	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007744_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007744_1

10409-10508

Orphan

Consensus_repeat	Method
TTGTTAGCGAAACGTTTCGATGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007744_1

>merge|NZ_CP007744|1|10409-10508|CRISPRCasFinder
TTGTTAGCGAAACGTTTCGATGGCGATCACATTTTTTTTATTTCTTCGTTGCCTTTCCCACTTCTTTTTCTAGAATGTTGTTAGCGAAACGTTTCGCTGG

>NZ_CP007744|1|1|10409-10508|CRISPRCasFinder
TTGTTAGCGAAACGTTTCGATGG	CGATCACATTTTTTTTATTTCTTCGTTGCCTTTCCCACTTCTTTTTCTAGAATG
TTGTTAGCGAAACGTTTCGCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007744.1\|WP_039289276.1\|13454_14342_+\|ribose-ABC-transporter-substrate-binding-protein-RbsB	unknown	unknown	gnl\|CDD\|182620
NZ_CP007744.1\|WP_011091664.1\|15343_16339_+\|ribose-operon-transcriptional-repressor-RbsR	unknown	unknown	gnl\|CDD\|182448
NZ_CP007744.1\|WP_011091654.1\|3651_5151_-\|ATPase-RavA	unknown	unknown	gnl\|CDD\|184118
NZ_CP007744.1\|WP_039289269.1\|9920_10316_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	unknown	unknown	gnl\|CDD\|225653
NZ_CP007744.1\|WP_011091651.1\|564_1026_-\|transcriptional-regulator-AsnC	unknown	unknown	gnl\|CDD\|183019
NZ_CP007744.1\|WP_039289267.1\|7667_9017_-\|two-component-system-sensor-histidine-kinase-QseC	unknown	unknown	gnl\|CDD\|182388
NZ_CP007744.1\|WP_039294600.1\|9013_9676_-\|response-regulator	unknown	unknown	gnl\|CDD\|182387
NZ_CP007744.1\|WP_039289271.1\|10520_10940_+\|D-ribose-pyranase	unknown	unknown	gnl\|CDD\|183318
NZ_CP007744.1\|WP_039289274.1\|12460_13429_+\|ribose-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181922
NZ_CP007744.1\|WP_043134837.1\|22038_22560_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|236750
NZ_CP007744.1\|WP_039289284.1\|22549_23128_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP007744.1\|WP_011091655.1\|5628_7497_+\|low-affinity-potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|182693
NZ_CP007744.1\|WP_011091653.1\|2167_3646_-\|ATPase-RavA-stimulator-ViaA	unknown	unknown	gnl\|CDD\|236815
NZ_CP007744.1\|WP_039289264.1\|1178_2171_+\|aspartate--ammonia-ligase	unknown	unknown	gnl\|CDD\|225304
NZ_CP007744.1\|WP_039289286.1\|23341_23611_+\|YihD-family-protein	unknown	unknown	gnl\|CDD\|368826
NZ_CP007744.1\|WP_039289273.1\|10947_12453_+\|ribose-ABC-transporter-ATP-binding-protein-RbsA	unknown	unknown	gnl\|CDD\|236755
NZ_CP007744.1\|WP_039289278.1\|14413_15340_+\|ribokinase	unknown	unknown	gnl\|CDD\|236858
NZ_CP007744.1\|WP_039289288.1\|23689_24676_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|236974
NZ_CP007744.1\|WP_011091650.1\|31_475_-\|FMN-binding-protein-MioC	unknown	unknown	gnl\|CDD\|181608

Protein	Function_ID	Function_description	E-value
NZ_CP007744.1\|WP_039289276.1\|13454_14342_+\|ribose-ABC-transporter-substrate-binding-protein-RbsB	gnl\|CDD\|182620	PRK10653, PRK10653, ribose ABC transporter substrate-binding protein RbsB.	0
NZ_CP007744.1\|WP_011091664.1\|15343_16339_+\|ribose-operon-transcriptional-repressor-RbsR	gnl\|CDD\|182448	PRK10423, PRK10423, transcriptional repressor RbsR; Provisional.	0
NZ_CP007744.1\|WP_011091654.1\|3651_5151_-\|ATPase-RavA	gnl\|CDD\|184118	PRK13531, PRK13531, regulatory ATPase RavA; Provisional.	0
NZ_CP007744.1\|WP_039289269.1\|9920_10316_+\|YgiW/YdeI-family-stress-tolerance-OB-fold-protein	gnl\|CDD\|225653	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown].	6.46062e-47
NZ_CP007744.1\|WP_011091651.1\|564_1026_-\|transcriptional-regulator-AsnC	gnl\|CDD\|183019	PRK11179, PRK11179, DNA-binding transcriptional regulator AsnC; Provisional.	3.21069e-116
NZ_CP007744.1\|WP_039289267.1\|7667_9017_-\|two-component-system-sensor-histidine-kinase-QseC	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	0
NZ_CP007744.1\|WP_039294600.1\|9013_9676_-\|response-regulator	gnl\|CDD\|182387	PRK10336, PRK10336, two-component system response regulator QseB.	3.91461e-122
NZ_CP007744.1\|WP_039289271.1\|10520_10940_+\|D-ribose-pyranase	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	4.87837e-90
NZ_CP007744.1\|WP_039289274.1\|12460_13429_+\|ribose-ABC-transporter-permease	gnl\|CDD\|181922	PRK09512, rbsC, ribose ABC transporter permease protein; Reviewed.	0
NZ_CP007744.1\|WP_043134837.1\|22038_22560_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|236750	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional.	1.74021e-120
NZ_CP007744.1\|WP_039289284.1\|22549_23128_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	8.07275e-100
NZ_CP007744.1\|WP_011091655.1\|5628_7497_+\|low-affinity-potassium-transporter-Kup	gnl\|CDD\|182693	PRK10745, trkD, low affinity potassium transporter Kup.	0
NZ_CP007744.1\|WP_011091653.1\|2167_3646_-\|ATPase-RavA-stimulator-ViaA	gnl\|CDD\|236815	PRK10997, yieM, ATPase RavA stimulator ViaA.	0
NZ_CP007744.1\|WP_039289264.1\|1178_2171_+\|aspartate--ammonia-ligase	gnl\|CDD\|225304	COG2502, AsnA, Asparagine synthetase A [Amino acid transport and metabolism].	0
NZ_CP007744.1\|WP_039289286.1\|23341_23611_+\|YihD-family-protein	gnl\|CDD\|368826	pfam06288, DUF1040, Protein of unknown function (DUF1040). This family consists of several bacterial YihD proteins of unknown function.	6.37243e-55
NZ_CP007744.1\|WP_039289273.1\|10947_12453_+\|ribose-ABC-transporter-ATP-binding-protein-RbsA	gnl\|CDD\|236755	PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional.	0
NZ_CP007744.1\|WP_039289278.1\|14413_15340_+\|ribokinase	gnl\|CDD\|236858	PRK11142, PRK11142, ribokinase; Provisional.	0
NZ_CP007744.1\|WP_039289288.1\|23689_24676_+\|serine/threonine-protein-kinase	gnl\|CDD\|236974	PRK11768, PRK11768, serine/threonine protein kinase.	0
NZ_CP007744.1\|WP_011091650.1\|31_475_-\|FMN-binding-protein-MioC	gnl\|CDD\|181608	PRK09004, PRK09004, FMN-binding protein MioC; Provisional.	2.46359e-91

>NZ_CP007744.1|WP_039289269.1|9920_10316_+|YgiW/YdeI-family-stress-tolerance-OB-fold-protein
MKKAAALFAITALVSAPVFAAQSGGGFVNPETSAVGTHKGGFIDPQNSLTTVDKAKDLRDDNWVTLSGNIEKRIGDENYLFRDSTGTMEVEIDHKRWNGQMVSPTDKVEIQGELDKDFNSVELDVKQIRKL
>NZ_CP007744.1|WP_039294600.1|9013_9676_-|response-regulator
MRVLLIEDDRLIGDGLKAGLNKLGFNIDWFTEGKAGATALKAAPYDAVVLDLSLPGMDGMDILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRRRHGQLQPVLTHGAVSLEPGSRSVTLNSEPLILKSRELALLELFLLNPNRVLTRAQLEEKLYSWDDDVSSNAVEVHIHHLRKKLGSGFIRTVHGVGYILGDAP
>NZ_CP007744.1|WP_039289267.1|7667_9017_-|two-component-system-sensor-histidine-kinase-QseC
MNRLSLRLRLIAGFALLTLMCWSVASLLSWYQTRHNINELFDTQQMLFAKRLATMNPDELRIQSTSLPKTKSLVHKNRGKQDDDALAFAIFTRDGKMVLNDGDNGKDFIFDSTRNGFTDGKLRDDNDAWRIVWLTTEDNRYVIAVGQEWEYRQDMTLDIVKTNLMPWLFALPIMLALLFWLVTRELSPLKRIAAELQLRSPDESTPLATQRIPQEVLPLVNALNLLFSRIHDMLTRERRFTSDAAHELRSPLAALKVQTEVAQLAHDDEAMRRHALMNLDKGIDRATRLVDQLLTLSRLDAESHPEGMRPVQFNELLQQAVIAHYRTAQTAGIELTLDLPDTPIIRQGHPLLLTLLVRNLLDNAIRYSHEGGTVSLTLTERGFQVADNGPGISDEALARIGERFYRPPGQEKSGSGLGISIVNNIAMLHQMRVTFTNQPQGGLIVSVNW
>NZ_CP007744.1|WP_011091655.1|5628_7497_+|low-affinity-potassium-transporter-Kup
MSSEHKRSLPAVTLAAIGVVYGDIGTSPLYTLRECLSGQFGFGVEPHSVFGFLSLIFWLLVLVVSLKYLTYVMRADNAGEGGILTLMSLAGRNTSDRMTSVLVIMGLIGGSFFYGEVVITPAISVMSAMEGLEIAAPAMDSYIVPLSIVVLTLLFIIQKHGTGSVGKLFAPVMLIWFLTLGVLGVRGIIANPEVLQALNPMYAVRFFIEYKAVSFFALGAVVLAITGVEALYADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEAIKNPFFLLAPDWALIPLMVLATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIVHTSDMESGQIYIPAINWMLYIAVVIVIVSFEHSSNLAAAYGIAVTGTMVITSILFCTVAVKNWLWNRYLAWVLLVGLLIIDVPMFLANVVKILSGGWLPLALGMVMFIIMTTWKSERFRLLRRLHEHGNSLDAMIASLEKSPPTRVPGTAVYFSRATRVIPFALLHNLKHNKILHERVVLLTMRTEDAPYVLNARRVTVEQLSPTFWRVIANYGWRETPDVEEVFQRCWQEGLTCQMMETSFFMSNESLIIGERPWYLRLRGKLFMMLSRNALRAADQFEIPPNRLIELGIQVEI
>NZ_CP007744.1|WP_011091654.1|3651_5151_-|ATPase-RavA
MRQTAALAERISRLSHALEHGLYERQHTIRLCLLAALSGESVFLLGPPGIAKSMIARRLKFAFRHANAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTAGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGNSEDTIPMRLLVAASNELPEADGGLEALYDRMLIRLWLDRVQEKQNFHALLVNNSSDRDNPVPPALSVSDEEYQQWQKDIEHVALPEVGFELIYMLRQQLDALEQAPYISDRRWKKALRLLQASAFFCGRDAITPVDIILLKDCLWHDQSTLTLIERQLELLITEHAYQQKSLLFRLQQVNTKRQQYQREQSELQAFSVEKQGHFLGRKFHYTLPDTIAAETLDLVLQRPLILHDIEVNHLTIEKNALQGWLQKGGEIRGKLNGIGFTQRLDLLVDDRQHLAIRDISLQSSVLSLPEKRDCALPAEITDEYEKLNMQLREQRRLFSQHQPCLFVPSEWLAKIEASLQQVAEQIQQSEQQD
>NZ_CP007744.1|WP_011091653.1|2167_3646_-|ATPase-RavA-stimulator-ViaA
MITLESLEMLLSIDENELLDDLVVTLMATPQLAFFFEKYPSLKSALLNDLPHWKETLKQRLRTTQVPPELEREFSCYQRSQSIDNQAFQTRLPAIMDTLNNVESPFLTQASQLITSPERTLGQKVTSGLHALFLQRWRLSLTLQTVSLHQQLMNQEREILLDELQQRLTLSGKLEPILAENENAAGRLWDLSAAQRIQTDPRLLLDFGTFLQRQPALQKLAERLGRSRETKSILTQEAPQEAFRVRVREPATVPEQVSGVHQSDDILRLMPTELVTLGISELEYEFYRRLLEHRLLTYRLQGESWREKVTERPVVHQQNEQQPRGPFIVCVDTSGSMGGFNERCAKAFCLALMRIALADNRRCYIMLFSTGVVKYELTSEDGLEQAIRFLSQSFRGGTDMAACLSALLDKMDDALWHDADAVVISDFIAQRLPDEVVNKVKSRQKQLQHRFHAVAMSDHGKPGIMHIFDHIWRFDTGLKSRLMRRWQHGKAY
>NZ_CP007744.1|WP_039289264.1|1178_2171_+|aspartate--ammonia-ligase
MKKQYIEKQQQISFVKSFFSSQLEQLLGLIEVQAPILSRIGDGTQDNLSGTEKAVQVKVKALPDATFEVVHSLAKWKRKTLGAYDFSFGEGIYTHMKALRPDEDRLSPIHSVYVDQWDWERVMGDGERNAEYLKSTVTRIYQGIKATEAAVHQAFGIQPFLPEQIHFVHTETLLKRYPDLDAKGRERAIAKELGAVFLIGIGGKLSSGHSHDVRAPDYDDWTTPGEQELAGLNGDIVVWNPVLNDAFEISSMGIRVDAEALTRQLALTQDEERLKLEWHQALLRGEMPQTIGGGIGQSRLVMLLLQLPHIGQVQCGVWPQPLRESVSGLL
>NZ_CP007744.1|WP_011091651.1|564_1026_-|transcriptional-regulator-AsnC
MAEIYQIDNLDRGILSALMENARTPYAELAKQFSVSPGTIHVRVEKMKQAGIIIGTRLDVNPKQLGYDVCCFIGIILKSAKDYPSALEKLNNLEEVVEAYYTTGHYSIFIKVMCRSIEALQHVLINKIQTIDEIQSTETLISLQNPIMRTIAP
>NZ_CP007744.1|WP_011091650.1|31_475_-|FMN-binding-protein-MioC
MADITLISGSTLGSAEYVAEHLAELLEKDNFSTEILHGPTLDALPESGIWLVVTSTHGAGEFPDNLKALFEQLEQQKPDLSQVNFGAIGIGSKEYDTFCGAIQTADRLLAQLGAKRIGEILEIDITQHQIPEDPAEEWLGSWVNLLK
>NZ_CP007744.1|WP_039289271.1|10520_10940_+|D-ribose-pyranase
MKKSALLNSDISSVIARLGHTDSLVIGDAGLPIPETTTRIDLALTHNVPTFLQVVNVVTSEMQVEAAILAEEMIEKNPAVHDALLDQLKQLEQHQGNSIALHYVSHEEFKTQSGKSRAIIRSGECSPYANVILCAGVTF
>NZ_CP007744.1|WP_039289273.1|10947_12453_+|ribose-ABC-transporter-ATP-binding-protein-RbsA
MQPLLQLQGITKSFPGVKALSGAALNVYPGKVMALVGENGAGKSTMMKVLTGIYRKDAGSIHFLGQEVDFNGPKASQEAGIGIIHQELNLIPQLTIAENIFLGREFTNRFGRIDWNKMYAEADKLLKRLNLCYDSRRMVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETASLFSVINELQSQGCGIVYISHRLKEIFEICDDITVFRDGQFIGERPVSDLEEDTLIEMMVGRKLEDQYPRSNKAPGEVRLKVQNLSGPGVDSVNFTVRKGEILGVAGLMGAGRTELMKILYGALPRTGGNVTLDGRDVVTRKPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSHAGGRLKHAEEQLTVADFIRLFNVKTPSMEQPIGLLSGGNQQKVAIARGLMTRPNVLILDEPTRGVDVGAKKEIYQLINQFKEEGLSIILVSSEMPEVLGMSDRIIVMHEGRLSGDFPIEQATQEALMAAAVGKQYGAKQE
>NZ_CP007744.1|WP_039289274.1|12460_13429_+|ribose-ABC-transporter-permease
MSSQSIAAKRWFSKEWLLEQKSLIALLILIAVVSALSPNFFTLNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAIAASIVGLEVNALVAVFGALAAGALIGAGTGVIVSKGKVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFSDVADAFGWFGIGRPLGIPTPIWIMAIVFAAAWYMLHHTRLGRYIYALGGNESATRLSGISVDKIKIIVYSLCGLLSALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKSSK
>NZ_CP007744.1|WP_039289276.1|13454_14342_+|ribose-ABC-transporter-substrate-binding-protein-RbsB
MNMKKLATLVSAVALSATVSTNALAKDTVALVVSTLNNPFFVSMKEGAQKEADKLGYELIVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAIKMANQAKIPVITLDRVASSGDVVSHVASDNAFGGKVAGDFIAKKLGEGAKVIQLEGIAGTSAARERGAGFMKSAEKNKFAMLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKTDVLVVGFDGTQDGVKAVESGKLAATVAQRPDQIGVIGIETAAKVLKGEKTQAIIPVDLKLVAK
>NZ_CP007744.1|WP_039289278.1|14413_15340_+|ribokinase
MKTGKLVVLGSINADHILNLEQFPRPGETVIGEQYSVAFGGKGANQAVAAGRSGANIAFIACVGEDDIGSRICQQLSKDNIDVSAVEAISGETTGVALIFVNAEAENMIAINAGANAAVTPDYLHRHQQHIIDASALLMQLESPLETVIAAAKLAHEHQTKVILNPAPARELPDELLSLVDMITPNETEAQLLTGITVETEADAARAAQVLHDKGIETVLITLGSRGVWLSESGQGQRIPGYRVKAVDTIAAGDTFNGALVTALLENQPMSSAVKFAHAAAAISVTRRGAQPSVPWREEIDAFLQAQE
>NZ_CP007744.1|WP_011091664.1|15343_16339_+|ribose-operon-transcriptional-repressor-RbsR
MATMKDVARLAGVSTSTVSHVINNNRFVSDAIREKIMKAVDDLNYAPSALARSLKINQTRTIGMLLTASSNPFYAEVVRGVERCCYERGYSLILCNTEGDRDRMSHSLETLLQKRVDGVLLMCTESHRPLPEMMSRYPSIPMVMMDWAPFEGAIDVIKDNSLLGGEIATNYLISRGYKKIACIAGPKDKTTAYNRLEGYRQAMQLAGLSVPTDYEIFGDFEFETGYRAMQQLLALEDKPEAVFTSNDAMAVGVYHALYQAGLSIPQDMAVIGYDDIELARYMSPPLTTVHQPKDELGELAVDTLLYRLEHPNTEPNVLVLTPELMVRQSVQ
>NZ_CP007744.1|WP_043134837.1|22038_22560_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MNSNHLPLLAIVAYSGTGKTTLLKHVIPLLANQGIRIGLIKHTHHQMDIDTPGKDSYELRKAGAAQTIVASSQRWALMTETPEQEEPDLYDLAEKMDASTLDLVLVEGFKHEKIAKIALFRQSLGRELNDLIDECVIAIAADSEIGTILPVLDINQPEQVANFIHQWLQSSRL
>NZ_CP007744.1|WP_039289284.1|22549_23128_-|molybdenum-cofactor-guanylyltransferase-MobA
MITGVILAGGRATRMGGHDKGLIVLNGVPLYLHVLSRLKTQVDEIIISANRNQDIYEQSGCRIIGDSDANFPGPLAGILSGLHASTSEWIVFVPCDVPVFPLDLVRRLWQARGEANAVYATDGERPHPTLLLINKNLIERLEAYLHLGNRKLMLFMEQVGAKPVSFNDQPEAFHNLNSPEDLSNWEDHHREF
>NZ_CP007744.1|WP_039289286.1|23341_23611_+|YihD-family-protein
MKCHRVNELIELLHPAWQKEPDLNLVQFLQNLAQEAGFEGQLNELTDDILIYHLKMRDSDKEQVIPGLKKDYEEDFKTALLRARGVIKN
>NZ_CP007744.1|WP_039289288.1|23689_24676_+|serine/threonine-protein-kinase
MNSSVFNFQTLFPDLIVDALLDVGLRVDSGLTALNSYENRVYQFADEDRKRFVVKFYRPERWSESQIQEEHIFALQLAEDEVPIVAPVSLNGQTLNVYEGFHFAVFPSIGGRQYEMDNEEQLEWVGRFLGRIHQTGQKSLFTERPTIGVNEYLHEPYRLLETCPLIPKIHRHSFLQATRQLIDTVETYWHSDWRPLRLHGDCHPGNILWRDGPLFVDLDDARNGPAIQDLWMLLHGDRREQRIQLDILLEAYSEFADFQEKELALIEPLRAMRQVYYLAWVARRWEDPAFPKNFPWMTDADFWLKQTAIFIGQTQLLQEPPLQLMPMY

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Crispr_ID: NZ_CP007744_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007744_2

30456-30555

Unclear

Consensus_repeat	Method
AAAACGCCGGGAGCGTTTTTGAACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007744_2

>merge|NZ_CP007744|2|30456-30555|CRISPRCasFinder
AAAACGCCGGGAGCGTTTTTGAACGTCACAACGTGACGGCCTTTTAGGGCGAGTCTCAGGGATGAGACGAGTAGCAAAACGCCGGGAGCGTTTTTGAACG

>NZ_CP007744|2|2|30456-30555|CRISPRCasFinder
AAAACGCCGGGAGCGTTTTTGAACG	TCACAACGTGACGGCCTTTTAGGGCGAGTCTCAGGGATGAGACGAGTAGC
AAAACGCCGGGAGCGTTTTTGAACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007744.1\|WP_011091664.1\|15343_16339_+\|ribose-operon-transcriptional-repressor-RbsR	unknown	unknown	gnl\|CDD\|182448
NZ_CP007744.1\|WP_039289303.1\|40258_41200_+\|fatty-acid-biosynthesis-protein-FabY	unknown	unknown	gnl\|CDD\|370533
NZ_CP007744.1\|WP_011091674.1\|32447_33860_-\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|182842
NZ_CP007744.1\|WP_039289290.1\|25701_28491_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP007744.1\|WP_011091676.1\|37037_38861_+\|ribosome-dependent-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP007744.1\|WP_011091671.1\|28909_29545_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP007744.1\|WP_039289305.1\|41509_43201_-\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957
NZ_CP007744.1\|WP_011091669.1\|24700_25324_+\|thiol:disulfide-interchange-protein-DsbA	unknown	unknown	gnl\|CDD\|182863
NZ_CP007744.1\|WP_039289288.1\|23689_24676_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|236974
NZ_CP007744.1\|WP_011091672.1\|29748_30303_+\|Der-GTPase-activating-protein-YihI	unknown	unknown	gnl\|CDD\|235370
NZ_CP007744.1\|WP_043134837.1\|22038_22560_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|236750
NZ_CP007744.1\|WP_039289284.1\|22549_23128_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP007744.1\|WP_039289301.1\|39698_40136_+\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_CP007744.1\|WP_015842303.1\|32181_32304_-\|YshB-family-small-membrane-protein	unknown	unknown	unknown
NZ_CP007744.1\|WP_039289286.1\|23341_23611_+\|YihD-family-protein	unknown	unknown	gnl\|CDD\|368826
NZ_CP007744.1\|WP_039289293.1\|30624_31998_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
NZ_CP007744.1\|WP_011091675.1\|35258_36668_-\|glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP007744.1\|WP_071598471.1\|29546_29738_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007744.1\|WP_039289296.1\|33868_34918_-\|nitrogen-regulation-protein-NR(II)	unknown	unknown	gnl\|CDD\|182947
NZ_CP007744.1\|WP_039289299.1\|39022_39634_+\|glucose-1-phosphatase	unknown	unknown	gnl\|CDD\|181872

Protein	Function_ID	Function_description	E-value
NZ_CP007744.1\|WP_011091664.1\|15343_16339_+\|ribose-operon-transcriptional-repressor-RbsR	gnl\|CDD\|182448	PRK10423, PRK10423, transcriptional repressor RbsR; Provisional.	0
NZ_CP007744.1\|WP_039289303.1\|40258_41200_+\|fatty-acid-biosynthesis-protein-FabY	gnl\|CDD\|370533	pfam09500, YiiD_C, Putative thioesterase (yiiD_Cterm). This entry consists of a broadly distributed uncharacterized domain often found as a standalone protein. The member from Shewanella oneidensis is described from crystallography work as a putative thioesterase because it belongs to the HotDog clan of enzymes. About half of the members of this family are fused to an Acetyltransf_1 domain pfam00583.	1.43852e-61
NZ_CP007744.1\|WP_011091674.1\|32447_33860_-\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|182842	PRK10923, glnG, nitrogen regulation protein NR(I); Provisional.	0
NZ_CP007744.1\|WP_039289290.1\|25701_28491_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP007744.1\|WP_011091676.1\|37037_38861_+\|ribosome-dependent-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP007744.1\|WP_011091671.1\|28909_29545_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	1.28569e-113
NZ_CP007744.1\|WP_039289305.1\|41509_43201_-\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	6.22365e-17
NZ_CP007744.1\|WP_011091669.1\|24700_25324_+\|thiol:disulfide-interchange-protein-DsbA	gnl\|CDD\|182863	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA.	2.31155e-152
NZ_CP007744.1\|WP_039289288.1\|23689_24676_+\|serine/threonine-protein-kinase	gnl\|CDD\|236974	PRK11768, PRK11768, serine/threonine protein kinase.	0
NZ_CP007744.1\|WP_011091672.1\|29748_30303_+\|Der-GTPase-activating-protein-YihI	gnl\|CDD\|235370	PRK05244, PRK05244, Der GTPase-activating protein YihI.	3.40281e-62
NZ_CP007744.1\|WP_043134837.1\|22038_22560_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|236750	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional.	1.74021e-120
NZ_CP007744.1\|WP_039289284.1\|22549_23128_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	8.07275e-100
NZ_CP007744.1\|WP_039289286.1\|23341_23611_+\|YihD-family-protein	gnl\|CDD\|368826	pfam06288, DUF1040, Protein of unknown function (DUF1040). This family consists of several bacterial YihD proteins of unknown function.	6.37243e-55
NZ_CP007744.1\|WP_039289293.1\|30624_31998_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
NZ_CP007744.1\|WP_011091675.1\|35258_36668_-\|glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP007744.1\|WP_039289301.1\|39698_40136_+\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	7.39846e-96
NZ_CP007744.1\|WP_039289296.1\|33868_34918_-\|nitrogen-regulation-protein-NR(II)	gnl\|CDD\|182947	PRK11073, glnL, nitrogen regulation protein NR(II).	0
NZ_CP007744.1\|WP_039289299.1\|39022_39634_+\|glucose-1-phosphatase	gnl\|CDD\|181872	PRK09456, PRK09456, ?-D-glucose-1-phosphatase; Provisional.	4.95182e-146

>NZ_CP007744.1|WP_011091672.1|29748_30303_+|Der-GTPase-activating-protein-YihI
MNRPVKGVADKAEKSKVKRKTREELEREARERKRDKKHRGHSAGSRTQEKASTDQNSGQRKVADPRIGSKKPVQLGVLDSAIVKPKPKSKPSEPVEKVVAAKPTMSPEEELAMLENDTRLDALLDRLDSGETLSAKDQSWVDETLDRIDILMEELGIELGDDDEEEQQEDMLQLLKRNNPKDAL
>NZ_CP007744.1|WP_071598471.1|29546_29738_+|hypothetical-protein
MVISIWISVWLGIIPVTDNKGGFICPKVQQTDVKRKAQSSDMGAFLLPSFLLDSAALPLYLCT
>NZ_CP007744.1|WP_011091671.1|28909_29545_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MTQQYNYHMTRFIISAPDIRHLETDNGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFQVAEGVRLVDLPGYGYAEVPEQMKIKWQRALGEYLQKRNSLKGLVVLMDIRHPLKDLDQQMILWAVDVKLPVLVLLTKADKLASGARKAQLNMVREAVLPFMGDIQVEAFSSLKKIGVDKLQQKLDNWFSTLQHIEEEQDAE
>NZ_CP007744.1|WP_039289290.1|25701_28491_+|DNA-polymerase-I
MAQIAENPLILVDGSSYLYRAYHAFPPLTNSAGEATGAMYGVLNMLRSLLLQYHPSHVAVVFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHSMVKAMGLPLLAVSGVEADDVIGTLAVQAEKAGKSVLISTGDKDMAQLVTPSVTLINTMNNTILGPQEVCDKYGIPPELIIDFLALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAELSFRGAKTMAPKLEQHKEVAYLSYQLATIKTDVELELSCEQLTVNELDVDELHRLFSRYEFKRWLSDIESGTWMQGKKSSQPVQTVSNAVVEQAVEEDNAPTLSADGYVTILDEKTLLDWIERLKQAEVFAFDTETDGLDTLTANLIGLSFAIKPGEAAYLPLAHDYLDAPEQLDRAQVLALFKPLLEDEKLLKIGQNLKFDKGVMQRYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHKTTTFEEIAGKGKNQLTFNQIALEQAGPYAAEDADVTLHLHQTLWGKLQPHADLCQVFQAIDMPLVPVLSRIERTGVLIDPAILAEHSKELTTRLAGLETQAYELAGEEFNLASTKQLQGILYEKQKLPILKKTPKGAPSTNEEVLAELALDYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIASKGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPMQGTAADIIKKAMIAIDDWLQKDTPLVKMIMQVHDELVFEIHDSVIEESISKIKILMEGCMKLNVPLQVDIGTGMNWDQAH
>NZ_CP007744.1|WP_011091669.1|24700_25324_+|thiol:disulfide-interchange-protein-DsbA
MKRLWLALIGVVLAFSASAAEFSDGKQYVELDKPATQEPQVLEFFSFYCPHCYQFEQVYHVPDAVKKALPEGTKMTRYHVDFLGPLGKNLTQAWAVAMALGVEDKITPLMFDAVQKTQTVQKPEDIRAVFVKAGVSAEEFDGALNSFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMIKNDGLDTSSMDGYVKQYADVVKFLITKK
>NZ_CP007744.1|WP_039289288.1|23689_24676_+|serine/threonine-protein-kinase
MNSSVFNFQTLFPDLIVDALLDVGLRVDSGLTALNSYENRVYQFADEDRKRFVVKFYRPERWSESQIQEEHIFALQLAEDEVPIVAPVSLNGQTLNVYEGFHFAVFPSIGGRQYEMDNEEQLEWVGRFLGRIHQTGQKSLFTERPTIGVNEYLHEPYRLLETCPLIPKIHRHSFLQATRQLIDTVETYWHSDWRPLRLHGDCHPGNILWRDGPLFVDLDDARNGPAIQDLWMLLHGDRREQRIQLDILLEAYSEFADFQEKELALIEPLRAMRQVYYLAWVARRWEDPAFPKNFPWMTDADFWLKQTAIFIGQTQLLQEPPLQLMPMY
>NZ_CP007744.1|WP_039289286.1|23341_23611_+|YihD-family-protein
MKCHRVNELIELLHPAWQKEPDLNLVQFLQNLAQEAGFEGQLNELTDDILIYHLKMRDSDKEQVIPGLKKDYEEDFKTALLRARGVIKN
>NZ_CP007744.1|WP_039289284.1|22549_23128_-|molybdenum-cofactor-guanylyltransferase-MobA
MITGVILAGGRATRMGGHDKGLIVLNGVPLYLHVLSRLKTQVDEIIISANRNQDIYEQSGCRIIGDSDANFPGPLAGILSGLHASTSEWIVFVPCDVPVFPLDLVRRLWQARGEANAVYATDGERPHPTLLLINKNLIERLEAYLHLGNRKLMLFMEQVGAKPVSFNDQPEAFHNLNSPEDLSNWEDHHREF
>NZ_CP007744.1|WP_043134837.1|22038_22560_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MNSNHLPLLAIVAYSGTGKTTLLKHVIPLLANQGIRIGLIKHTHHQMDIDTPGKDSYELRKAGAAQTIVASSQRWALMTETPEQEEPDLYDLAEKMDASTLDLVLVEGFKHEKIAKIALFRQSLGRELNDLIDECVIAIAADSEIGTILPVLDINQPEQVANFIHQWLQSSRL
>NZ_CP007744.1|WP_011091664.1|15343_16339_+|ribose-operon-transcriptional-repressor-RbsR
MATMKDVARLAGVSTSTVSHVINNNRFVSDAIREKIMKAVDDLNYAPSALARSLKINQTRTIGMLLTASSNPFYAEVVRGVERCCYERGYSLILCNTEGDRDRMSHSLETLLQKRVDGVLLMCTESHRPLPEMMSRYPSIPMVMMDWAPFEGAIDVIKDNSLLGGEIATNYLISRGYKKIACIAGPKDKTTAYNRLEGYRQAMQLAGLSVPTDYEIFGDFEFETGYRAMQQLLALEDKPEAVFTSNDAMAVGVYHALYQAGLSIPQDMAVIGYDDIELARYMSPPLTTVHQPKDELGELAVDTLLYRLEHPNTEPNVLVLTPELMVRQSVQ
>NZ_CP007744.1|WP_039289293.1|30624_31998_+|oxygen-independent-coproporphyrinogen-III-oxidase
MSIPSVDWDLALIQKYNYSGPRYTSYPTALEFSEAYDEPAFQHAIARYPQRPLSLYIHIPFCHRLCYFCGCNKLVTRQQHKADEYLDVLELEIRQRAPLFAGRTVTQLHWGGGTPTYLNKLQISRLMSLLRELFSFSEQAELSLEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKDVQKLVNREQDEDFIFALIERAKALGFTSTNIDLIYGLPKQTPESFAFTLQRVAELSPHRLSVFNYAHLPSLFAAQRKIKDADLPSAEQKLDILQQTIGSLTQSGYQFIGMDHFARPDDELAVAQREGTLHRNFQGYTTQGDSDLVGMGVSAISMIGDNYAQNQKELKQYYAQVKDKGNGLWRGLQLTRDDCLRRDVIKTLICNFQLSYAPIEAEYAIDFKTYFEQDLALLAPLVADGLVDSQEDGLAVTPKGRLLIRNICMCFDVYLRSKLRTQQFSRVI
>NZ_CP007744.1|WP_015842303.1|32181_32304_-|YshB-family-small-membrane-protein
MLDSLISVATHGAEIGSAASHSPQAAIAAVLCAALINFFS
>NZ_CP007744.1|WP_011091674.1|32447_33860_-|nitrogen-regulation-protein-NR(I)
MQRGIVWIVDDDSSIRWVLERALAGAGLTCATFENGNQVLHALATQTPDVLLSDIRMPGMDGLALLQQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALAERAISHYLEQQQPVRNQPINGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRTKAPFIALNMAAIPKDLIESELFGHEKGAFTGANQIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAAVKVDVRIIAATHQNLEQRVQEGKFRDDLFHRLNVIRVHLPPLRERREDIPRLARYFLQATAKELGVEPKNLHPEAETALTRLPWPGNVRQLENTCRWLTVMAAGQEVLIQDLPPELFETTAPDSTVHILPDSWATLLAQWADRALRSGHQNLLAEAQPEMERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME
>NZ_CP007744.1|WP_039289296.1|33868_34918_-|nitrogen-regulation-protein-NR(II)
MATGTLPDAGQILNSLINSILLLDNDLAIHYSNPAAQQLLAQSSRKLSGTPLPDLLGYFSLNIDLLRESLDSGQGFTDNEVTLVVDGKAHIMSLTAQRVQNDFILLEMAPMDNQRRLSQEQLQHAQQQAARDLVRGLAHEIKNPLGGLRGAAQLLAKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQQPGLHVTQSIHQVAERVCQLVSLEKPNNVTLVKDYDPSLPELTHDPDQIEQVLLNITRNALQALGEEGGTITIRTRTAFQLTLHGVRYRLAARIDVEDDGPGVPAQLQDTLFYPMVSGREGGTGLGLSIARSLIDQHSGKIEFNSWPGHTEFSVYLPIRQ
>NZ_CP007744.1|WP_011091675.1|35258_36668_-|glutamate--ammonia-ligase
MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNADFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAMIDPFFEDTTLIIRCDILEPGTMQGYDRDPRSIAKRAEDFLRSSGIADTVLFGPEPEFFLFDDIRFGSSTSGSHVAIDDVEAYWNSGKAYEGGNKGHRPGLKGGYFPVPPVDSSQDIRSAMCLTMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHAYGKTATFMPKPMFGDNGSGMHCHMSLSKDGTNLFAGDKYGGLSEMALFYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEARFPDPAANPYLCFAALLMAGLDGIINKIHPGDAMDKNLYDLPPEEEAEIPKVAGSLDEALAALNEDREFLTRGGVFTDDAIEAYIELRKPEIDRVRMTPHPVEFELYYSV
>NZ_CP007744.1|WP_011091676.1|37037_38861_+|ribosome-dependent-GTPase-TypA
MIENLRNIAIIAHVDHGKTTLVDKLLQQSGTFGERVEATERVMDSNDLEKERGITILAKNTAINWKDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAMDGPMPQTRFVTKKAFANGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIIYASALNGIAGLDHNDMAEDMTPLYQAIVDHVSPPLVEMDAPFQMQISQLDYNNYVGVIGIGRIKRGKVKPNQQVTIVDSEGKTRNGKVGKVLTHLGLERIDATEAEAGDIIAITGLGELNISDTICDPQNVEALPALSVDEPTVTMFFNVNTSPFCGKEGKYVTSRQILERLNKELVHNVALRVDETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVINRVIDGRNQEPFENVTLDIEEQHQGSVMQAMGERKGDVKDMIPDGKGRIRLDYLIPARGLIGFRTEFMTMTSGTGLLYSTFSHYDDVRQGEIGQRQNGVLVSNGQGKAVAFALFSLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEATTLVPAIKMSLEQALEFIDDDELVEVTPQSVRIRKRHLTENDRKRASRGSKDV
>NZ_CP007744.1|WP_039289299.1|39022_39634_+|glucose-1-phosphatase
MLYIFDLGNVVIDIDFKRVLGVWSNLSSAPLATLQERFVMGEAFEQHERGEISDEEFATRLCQEMGIALSFEQFTAGWQAIFVALRPEVIDIMQRLRQEGHRVVILSNTNRLHCSHWPALFPEVATAADRLYLSQDIGLRKPELAIYQYVLTQEGVTPAQAVFFDDNSANVDAAQSLGIHSILVTDRQVVTDFFAMQATTAKA
>NZ_CP007744.1|WP_039289301.1|39698_40136_+|D-tyrosyl-tRNA(Tyr)-deacylase
MIALIQRVSSASVTVEGNIIGEIDKGLLILLGVEQGDDEQKATRLCERVLGYRIFADDDGKMNLNVRQAGGNVLVVSQFTLVADTQRGMRPGFSRGAHPSEADRLYQYFVEQCREQGVHTETGQFAADMKVALVNDGPVTFWLQT
>NZ_CP007744.1|WP_039289303.1|40258_41200_+|fatty-acid-biosynthesis-protein-FabY
MYHLRVPESAEDLDAYYQFRWEMLRKPLHQPLGSERDAYDALAHHQTVVDEQGRLVAIGRLSINADNEAAIRFLAVHPDLRGKGLGTLLAITLESVARQEGVKRVVCSAREDAMDFFSKLGFVNQGEISAPQTTPVRHFLMIKPVATLDDILHRADWCGQLQQAWYDHIPLSEKMGVRISQYTGKKFITTMPEAGNQNPHHTLFAGSMFSLATLTGWGLIWLLLRERHLGGTIILADAHIRYSTPVSGRPSAIADLGSLSGDLDRLARGRKARVQLNVELFGDDNKGALFEGVYIVLPAQPDAPLEEGGSEVD
>NZ_CP007744.1|WP_039289305.1|41509_43201_-|AsmA-family-protein
MKFIGKLLLTLLLLAFLALVVVYVLLQTSWAAGWVSNWVNQNTDYQLSLGKINHDWSTADHIQLTDVSFGQKNQPPTLTAKQVSAGFSARQVTEPRHFASLELEGGTLNLSSQAATLPIEADVLQLRTMALQAKDGDWRLNGQQINGGIMPWQPEAGYLLGKQGQFQLSARSLELNDIPASQVLVQGEINHNQLILSNFGADVAQGQLTGNASRAEDGSWQVGSLRLSNVRLQTQRTPEAFWQPVTELPSVTVNRFDLIDARIEGPGWAFIDLDVALQNVTFKQNDWQSEGGTLSFNATDIVNGNMHLIDPIVNLDLSPAGINIKQFSTRWEGGLLRTNGNWQRNNRRLQLNEFVVAGMEYTLPGDWRQRWQATLPSWLAEVNVRKFTANRNLLIDINPDFPFQLTALDGYGSDLLLARNHQWGMWTGSLNLNASNATFNKVDVRRPSIALVANDNQIAINELSAFTQNGMLDAKATINQQPARNFSLSLTGRAVPLDVLTRWGWPEPTTAPTGNTNLQLQLNGRLAADTPLKPTLNGTLQGVDSNDHPIRQQMHQGAVTEAQ

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Crispr_ID: NZ_CP007744_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007744_3

707784-707888

Orphan

Consensus_repeat	Method
CCGTGTATCTCGATGCTTAAGCGATCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007744_3

>merge|NZ_CP007744|3|707784-707888|CRISPRCasFinder
CCGTGTATCTCGATGCTTAAGCGATCGGCGTTAGGCCATGCGGGTTAGTTAATTCTATTTATCAGGAGCGACACGCTCCGTGTATCTCGATCCTTAAGCGATCGG

>NZ_CP007744|3|3|707784-707888|CRISPRCasFinder
CCGTGTATCTCGATGCTTAAGCGATCGG	CGTTAGGCCATGCGGGTTAGTTAATTCTATTTATCAGGAGCGACACGCT
CCGTGTATCTCGATCCTTAAGCGATCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007744.1\|WP_011092348.1\|696415_698095_+\|acetolactate-synthase-AlsS	unknown	unknown	gnl\|CDD\|236312
NZ_CP007744.1\|WP_011092355.1\|705919_706792_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP007744.1\|WP_011092353.1\|704564_704930_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP007744.1\|WP_011092363.1\|715980_716589_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|372434
NZ_CP007744.1\|WP_039290010.1\|708751_709840_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NZ_CP007744.1\|WP_039290004.1\|701557_704431_+\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NZ_CP007744.1\|WP_039290000.1\|698161_699313_-\|lactaldehyde-reductase	unknown	unknown	gnl\|CDD\|182595
NZ_CP007744.1\|WP_011092361.1\|712558_714703_-\|alpha-galactosidase	unknown	unknown	gnl\|CDD\|225882
NZ_CP007744.1\|WP_011092362.1\|714922_715927_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380665
NZ_CP007744.1\|WP_011092350.1\|699876_700992_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP007744.1\|WP_039294682.1\|705034_705784_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235816
NZ_CP007744.1\|WP_039290007.1\|706781_707681_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP007744.1\|WP_011092357.1\|707927_708752_+\|phosphodiesterase	unknown	unknown	gnl\|CDD\|277347
NZ_CP007744.1\|WP_039290013.1\|709832_711140_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
NZ_CP007744.1\|WP_011092347.1\|695611_696394_+\|acetolactate-decarboxylase	unknown	unknown	gnl\|CDD\|377014
NZ_CP007744.1\|WP_011092351.1\|701050_701443_+\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP007744.1\|WP_039290019.1\|717878_718880_-\|tRNA-modifying-protein-YgfZ	unknown	unknown	gnl\|CDD\|236567
NZ_CP007744.1\|WP_011092366.1\|719115_719382_+\|FAD-assembly-factor-SdhE	unknown	unknown	gnl\|CDD\|182803
NZ_CP007744.1\|WP_011092364.1\|717007_717655_+\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|185044
NZ_CP007744.1\|WP_039290016.1\|711201_712464_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|236549

Protein	Function_ID	Function_description	E-value
NZ_CP007744.1\|WP_011092348.1\|696415_698095_+\|acetolactate-synthase-AlsS	gnl\|CDD\|236312	PRK08617, PRK08617, acetolactate synthase AlsS.	0
NZ_CP007744.1\|WP_011092355.1\|705919_706792_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	3.42938e-75
NZ_CP007744.1\|WP_011092353.1\|704564_704930_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.15265e-28
NZ_CP007744.1\|WP_011092363.1\|715980_716589_-\|HD-domain-containing-protein	gnl\|CDD\|372434	pfam13023, HD_3, HD domain. HD domains are metal dependent phosphohydrolases.	5.088e-65
NZ_CP007744.1\|WP_039290010.1\|708751_709840_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	6.54449e-158
NZ_CP007744.1\|WP_039290004.1\|701557_704431_+\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NZ_CP007744.1\|WP_039290000.1\|698161_699313_-\|lactaldehyde-reductase	gnl\|CDD\|182595	PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional.	0
NZ_CP007744.1\|WP_011092361.1\|712558_714703_-\|alpha-galactosidase	gnl\|CDD\|225882	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP007744.1\|WP_011092362.1\|714922_715927_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380665	cd20010, PBP1_AglR-like, Ligand-binding domain of DNA transcription repressor specific for alpha-glucosides (AglR) and similar proteins. Ligand-binding domain of DNA transcription repressor specific for alpha-glucosides (AglR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.32066e-81
NZ_CP007744.1\|WP_011092350.1\|699876_700992_+\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP007744.1\|WP_039294682.1\|705034_705784_+\|SDR-family-oxidoreductase	gnl\|CDD\|235816	PRK06500, PRK06500, SDR family oxidoreductase.	1.02347e-160
NZ_CP007744.1\|WP_039290007.1\|706781_707681_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.33934e-69
NZ_CP007744.1\|WP_011092357.1\|707927_708752_+\|phosphodiesterase	gnl\|CDD\|277347	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	3.37742e-82
NZ_CP007744.1\|WP_039290013.1\|709832_711140_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.45746e-106
NZ_CP007744.1\|WP_011092347.1\|695611_696394_+\|acetolactate-decarboxylase	gnl\|CDD\|377014	pfam03306, AAL_decarboxy, Alpha-acetolactate decarboxylase.	3.39035e-120
NZ_CP007744.1\|WP_011092351.1\|701050_701443_+\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.21099e-71
NZ_CP007744.1\|WP_039290019.1\|717878_718880_-\|tRNA-modifying-protein-YgfZ	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	0
NZ_CP007744.1\|WP_011092366.1\|719115_719382_+\|FAD-assembly-factor-SdhE	gnl\|CDD\|182803	PRK10878, PRK10878, FAD assembly factor SdhE.	7.56717e-47
NZ_CP007744.1\|WP_011092364.1\|717007_717655_+\|hemolysin-III-family-protein	gnl\|CDD\|185044	PRK15087, PRK15087, hemolysin; Provisional.	6.65869e-132
NZ_CP007744.1\|WP_039290016.1\|711201_712464_-\|MFS-transporter	gnl\|CDD\|236549	PRK09528, lacY, galactoside permease; Reviewed.	0

>NZ_CP007744.1|WP_039290007.1|706781_707681_+|carbohydrate-ABC-transporter-permease
MSAENQIVDVRSVKSQRGESRSVTNPLRVTTRFTLPLLLICAALLWVSPFIWMLSSSISASSFGVDMASLLPRLPLTFDNFRDAWDSADWLRLYTNTLIFAVGTFLVQLVTITTAGYIFAYHEFRGKTLLFYLLLIQMMIMPVVMMVPNMMTLKQLGLLNTLTGVMMPYFASAFGVFLMRQAFLNIAKEIEEAALMEGCRWWQVVFHVLIPMTWPSILAFATVSITYHWNEYLWPLMVLNDPDKQVLTIGLVSFAMGAESGGQWGLICAGTLLVCLPLMVAFVVFQKQFLSSFGFSGIK
>NZ_CP007744.1|WP_011092355.1|705919_706792_+|sugar-ABC-transporter-permease
MRAKCFPYLVLLPTLVFLLAFTYFPLLRSVIDSLYDTRLNADTPLFVGLDNFARLVQDAVFWQALLNNVLYILMTVVPGVLLALLLAVLLWENTRVNRWLRTAFFFPMIIPLVSAATLWLFIFMPGLGLLDYYLAKVFGPMNNNYLGMSDSALVAVSVIGIWKFAGYYMLFFLAGLQAISTSAREAALMEGASRRQVFFYVTLPLLRPTIAFVVTIAFIYAITQIDHVAVMTRGGPNNATTVLLYYIQDLANDTHDLGKASAATFLTLALLFAFSIMNLKVLEKGAHYER
>NZ_CP007744.1|WP_039294682.1|705034_705784_+|SDR-family-oxidoreductase
MKRLQDKFALITGGTSGIGIETARQFLAEGATVAITGRDEKALARAQAELGHSTLAIRCDAGDIRAQHDLAQTLAQQWPRLDVLYANAGDVTHRSLEDWDEAAWDRLMATNLKGPFFLVQALLPLLNNPSSVILCGSTSAHIGLPQSSAYAASKAGLLSLARTLSAELVTRGIRVNGLSPGPTETPALDKLGLSPEQQRAMQEQIRQLVPIGRMGTPWELAKAAVFLASDESRFVVGTELLVDGGVANL
>NZ_CP007744.1|WP_011092353.1|704564_704930_-|helix-turn-helix-transcriptional-regulator
MSVHSPSANTPSDMAEPCPMVNFVNLIAGKWAIPILYRLIVIGEPVRFSALQRAIAPITQKELTRQLRLFEQRKLVQRKVYAEVPPRVEYQITPLGKSLQPTLDSLADWMRTHGKTLADGG
>NZ_CP007744.1|WP_039290004.1|701557_704431_+|aminomethyl-transferring-glycine-dehydrogenase
MTQTLSQLEHDGAFIERHIGPSVSQQQHMLSVVGATSLDALIRQIVPADIQLPSPPAVGEAVTEHEALAELKAIAGRNQRYKSYIGMGYSAVLMPPVILRNVLENPGWYTAYTPYQPEVSQGRLEALLNFQQVTQDLTGLDLASASLLDEATAAAEAMAMAKRISKLKQAERFFVADDVHPQTLDVVRTRAETFGFEIVVGKAEEALKDDAVFGVLLQQAGTTGELHDYSDLMAALKARKVVSCVASDIMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFACRDEHKRAMPGRIIGVSRDAAGNTAFRMAMQTREQHIRREKANSNICTSQVLLANIAGMYAVFHGPEGLKRIAGRIHRLTDILAAGLTQGGLLLRHRSWFDTLTIEVADKDVVLSRALSFGINLRSDLASAVGITLDEATTREDVLALFAVLLGDDHGLDIEALDASIAQEVATIPAGLLRHDAILSHPVFNRYHSETEMMRYLHRLARKDLALNQAMIPLGSCTMKLNAAAEMLPITWPEFAELHPFCPPEQALGYRQMIEQLSGWLVQLTGYDAVCMQPNSGAQGEYAGLLAIRRYHESRNEAGRHLCLIPSSAHGTNPASAQMAGMEVVVVACDKQGNIDLHDLREKAQAAGEQLSCIMVTYPSTHGVYEETIREVCQIVHQYGGQVYLDGANMNAQVGITTPGYIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHQVVKIDGVLTDQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQMAILNANYIATRLQQAYPVLYTGRDGRVAHECILDIRPLKESTGISEMDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESQVEIDRFIDAMLAIRAEINRVAQGEWPLDDNPLVNAPHTQAELVADWAHPYSRELAVFPVGSEHKYWPSVKRLDDVYGDRNLFCSCVPMSDYA
>NZ_CP007744.1|WP_011092351.1|701050_701443_+|glycine-cleavage-system-protein-GcvH
MSNVPTELKYATSHEWVLHEGDGIYSVGITEHAQELLGDMVFIDLPEVGTVVAAGDDCAVAESVKAASDIYAPISGEVVEVNEDLENSPELVNSAPYTDGWLFRIKISDESDLDELLDAEGYQASLEEDE
>NZ_CP007744.1|WP_011092350.1|699876_700992_+|glycine-cleavage-system-aminomethyltransferase-GcvT
MAKQTPLYQQHLADGAKMVDFHGWMMPLHYGSQLDEHHIVRRDAGIFDVSHMTIVDLHGVRTREFLRYLLANDVAKLTQPGKALYTGMLNASGGVIDDLIVYFLTEDYFRLVVNSATREKDLAWIEQHAAAFGVDIRERDELALVAVQGPQAQEKVQGLLKAKGLSDEDVAAVASMKPFFGKQAGDFFVATTGYTGEAGYEIALPNEQVVDFWQQLLAVGVKPCGLGARDTLRLEAGMNLYGQDMDEGISPLAANMGWTIAWQPEDRQFIGREALVHQREKGTEQLVGLVLTEKGVLRNDLSVRFTDSDGVMREGVITSGSFSPTLGVSIALARVPAGIGEQAIVQIRNRELPVRVTKPGFVRAGKAIVQY
>NZ_CP007744.1|WP_039290000.1|698161_699313_-|lactaldehyde-reductase
MVNRMILNETSYFGTGAIAQIADEVKRRGFKKALLVTDKDLVKFGVAAKVTAKLDAAGLPYDIYDEVIPNPTIGVVERGIEHFKASQADYLIAIGGGSPQDTCKAIGIIINNPEFADVRSLEGVAPTRRPSVPIIAIPTTSGTAAEVTINYVITDEEKRRKFVCVDPHDIPIVAIVDPDMMMSMPASLKAATGIDALTHAIEGFTTKAAWELTDTLHLKAIEIISRSLRDSVAGKPKGVEEMALGQYIAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHIMAYNADYTGEKFRDIAVAMGVNGATDMSIAQAREAAIHAVRQLSHDVDIPPRLRDVGVREEDIPALAQAAFDDVCTGGNPRDTNIDDIKALYQSIY
>NZ_CP007744.1|WP_011092348.1|696415_698095_+|acetolactate-synthase-AlsS
MEKSTEKQSWSSGAELIVKHLEAQGVKHIFGIPGAKIDRVFDELEDSTIQTIPVRHEANGAFMAAAIGRLTGKAGVTLVTSGPGCSNLVTGLATATAEGDAVVALGGAVKRADKLKLTHQSLDTVSLFQPVSKFSAEITASSAISEVLANAFRAAESGRPGAAFVSLPQDIVNEPVISPVLACPHLPLLNGAPQSDIAEAAKLLRQAKNPVLLLGLMASQQENAQALRRFLHHSQLPVTSTYQAAGVIDQQQFNHFAGRVGLFNNQAGDKLLQQADVIVTVGYSPIEYDPSLWNNGKATLIHIDVLRAEIDSAYRPNIELLGNIAMTVDTLNACISEPFILSSGTQAVLQDRQRQRHDLSTRAINMTGFAIHPLRLVRAMQDIVNEDVTLCVDMGSFHIWLARYLYSFRARQILMTNGQQTMGVALPWAIAASLVQPGKKVVSVSGDGGFMQSSMELETAVRLKSNLLHIIWVDNGYNMVEIQQLHKYHRPAGVSFGPIDFKAYAEAFGAKGFAVESADELVSKLRQAMDVDGPAVIAIPVDYSDNHWLMENLNISVLV
>NZ_CP007744.1|WP_011092347.1|695611_696394_+|acetolactate-decarboxylase
MKTSIGEQSCEEAFASYAYDFRQEHADCVIYQTSLMSGLINGVYEGSRTMAELLEHGDFGLGTFNSLDGELVALNSQIFQLLSDGSARAARPEQKTPFAVMTFFRPTETIRFHRWTSREEVHRQIDEIVGTDNLFCALRIDGRFRCVETRTVPRQCRPYKPMQEAIEGQPTFHFEHRSGSVIGFRSPAYTQGINVAGYHEHFITDDRQGGGHILNYDVENGTLTFGVIAKLIIDLPQDREFLNADLSSENLNSVIKSVES
>NZ_CP007744.1|WP_011092357.1|707927_708752_+|phosphodiesterase
MLLAQISDLHFRSEGRKLYEFIDINGENAKVINQLNALSERPDAVVISGDIVNCGRPQEYQVAQRVLQMLDYPLYVIPGNHDDKQHFLNAMRPLCPQLGDDPENIRYAVDDFPMRLLFIDTSLTGQAKGWLTPSTLGWLEQQLQDHSTRETAIFMHHPPLPLGSAHMDRIACENGHELLTLIERFPQLTRIFCGHTHRLIMTQHRQAIIATVPGTVHQVPYFYYDDTSYYNLEPASIVMHRYVPVTGLVSYCQSIASNTGPYLYDPRISCPVDA
>NZ_CP007744.1|WP_039290010.1|708751_709840_+|ABC-transporter-ATP-binding-protein
MAVIQLRNISKRFEHMQALASLSLDIADGEFLVLVGPSGCGKSTLLRMLAGLEDVSDGQILLGDDDITTWSPKQRNFSMIFQNYALFPHLTVEQNITFGMRMRGEPKAEYPQRVQRVASLLQLEPLLKRKPGKLSGGQRQRVAMARAIVRDPRLFLMDEPLSNLDARLRSDVRDGIMDLHRQLKTTTVYVTHDQIEAMTMADRIAVLDRGVLQQVGTPEQLYSYPANVFVAGFIGTPAMNMVTLVCSEGHAFLQALPVVLPVSEETRSLTSVLLGIRPEHITEHAASDGDLSLSGTVKQRELFGAEYLMHVDTPLGNIRYRRPNRDGVPNIGASVVLHFSPQDCHWFSGQTARNLSQEKRNA
>NZ_CP007744.1|WP_039290013.1|709832_711140_+|ABC-transporter-substrate-binding-protein
MRKPRMMALAIALLMSGPALAKENIDFMFPAPVDGKLTMEMTRIIKEYNQSQDQVEVRGIFTGSYDTTKVKAEAAAKAGDPPALVIMSANFTADLVIKDEILPMDELFKYGNEKATPFLTKNFWPALHQNAQVMGVTYAIPFHNSTPILYYNEDMLKKAGFNEPPKNWDEVAAVAKKLTDPAKGQWGIMIPSTNDDYGGWMLSALTRANGGAYYNADYPGEVYYNTASTKGALQFWRDLVYRDKAMPAGVLNSKQISAAFFSGKLGMAMLSTGALGFMRENTKDFSLGVAMMPEKERRGVTIGGASLVSFKGISEEKKKAAWQFMNYLVSPEVSGSWSRFTGYFAPRMAAYDLPEMKDYLAKDPRAAIALSQLQYAHPWYATYETVAVRKAMENQLAALLNDPAKKVDDAAAAAQKEADGIMKPYVDKTALRDVK
>NZ_CP007744.1|WP_039290016.1|711201_712464_-|MFS-transporter
MPTTSCYYKNNRNFWVFGAFFFLYFFIMATCFPFLPIWLSDVIGLNKTDTGIVFSFLSLFAILFQPFLGILSDKLGMKKHLLWVISVLLLFFAPFFLYVFAPLLKINVILGALVGGLYIGFSFSAGAGAIEAYIERISRQHHFEYGKARMFGCFGWGICASTAGMLFNINPDIVFWMGSGSAIILIVLLCLAKTESNPTAAVMDSLGANTSPFSVKLALGLLANRQFWLLVLYVVGVACIYDVYDQQFANFFKSFFNSQEQGNQIFGFVTTAGEAANALVMFCTPWLIGRIGAKNALLVAGTIMSIRILGSACATSITEVIILKMLHAFEVPLLLIGIFKYIASTFDSRLSATIYLVGFQFAKQFMAIFLSSAAGNLYDRIGFNQTYLILGGIALTFTAISAFTLSSSRSTTNMHSQAAH
>NZ_CP007744.1|WP_011092361.1|712558_714703_-|alpha-galactosidase
MMRDIVQLTSAQCDVIVRCAPAAEILYWGPRLRGFLPEDVASLQRPVANGRLDVDLPLTLAMEYGRGQFGSPGIEGHRSGYDAAPIFTTTQVDVQGNTLTITADDTQAGLRLTSELRLDPQTDVLQLRHTLQNLRADAWQVQRLAVTLPVPERASDVMAFHGRWLREFQAHRLTLQHGGFIQESRRGRSSHEYFPALILGEPAFSEQRGAVWGVHLGWSGNHRLRADIKTDGRRVVQAEALYLPGEITLAQSESLTTPWVYAAFSDTGLNGMSQRYHSFLRQSLIQFCGDKPRPVHLNTWEGIYFDHSPEYIMQMASKAADVGVERFIIDDGWFRGRHHDRAALGDWYLDEEKYPNGLMPVIEHVKALGMEFGIWVEPEMINPDSDLFRAHPDWVLQLPGYKQPTGRYQYVLNLNQPDAFAYLLERLSWLLGEHPVDYVKWDMNRELVQPGHEGRLAADAQTRQFYRLLDTLRQRFPHVEFESCASGGGRIDYGVLERTQRFWVSDNNDALERQTIQRGMSYFFPPEVMGQHIGHARCHATYRRHTIAFRGLTALFGHMGIELDPVKADDDELEGYRHYIQLHKTLRPLLHSGTTWRVEMPDDTVQVTGVVSRDRQHAVFQVAQLRMPDYSLAGTLRFPGLLPDARYEIKLLDGPEIKTVREGGSTMRELPPWLRQPLVVSGDWLMQAGLALPVLTPETAILVELSAVPESAGR
>NZ_CP007744.1|WP_011092362.1|714922_715927_-|LacI-family-DNA-binding-transcriptional-regulator
MSLKTIANNLGLSVTAVSRALNGHRDISEATRQRIQEEAERIGYRPNTHARRLKMGKSDAIGLVYPYASSLSNDIFFEMIGAISSKLAQHDVDFLLLADEQDACQGAVRLITSHRIDALIVAHTCEQDARLMLLQHHKVPFLALGRSQLPHPYAWFDFDNRAGMALATEHLITLGHRRIAMLSEDHPQAFIMQRRQGYRDALQRHNLPFHDDYLRGVDPTRRAGYQAMLDLLALPEPPTAIVMDGNVHGDGAVAALQQAGRLSGPHPIALVMYDGLPQDSLTDLNVTAIEQATREQVGEQIASMTQALIAGEAVENLQVLWQPTLRIGKTSFPA
>NZ_CP007744.1|WP_011092363.1|715980_716589_-|HD-domain-containing-protein
MSSSPSTLNFGSMTDVFGFLIEIDKLKSVQRRTKIIGSERHEDSAEHSWHFAVAAMALAPYAGEGVDIQRVIQMALIHDIVEIDAGDVIVYDLSARLAIHDQEVAAAARIFGLLPEPQRQQFQDLWEEYEANETPSAQFALVLDRVMPMLMNLYNGGQSWVENGIRLEQVLDRAEFIATINPELWQYMKQHLEDAKAKGWLL
>NZ_CP007744.1|WP_011092364.1|717007_717655_+|hemolysin-III-family-protein
MSKNAQMSDYSLAEEIANSISHGIGVIFGIVGLVLLLVQAVNNDAGSVAITSYSLYGGSIILLFLASTLYHAIPSPRIKPWLKKFDHCAIYLLIAGTYTPFLLIGLDSPLAHGLMVVIWSMALLGVIFKLAFAHRFEVLSLITYLVMGWLSLVVIYQMVMKLSAGSVTLLAVGGVVYTLGVIFYASKRIPYNHAIWHGFVLGGSVCHFLAIYLYI
>NZ_CP007744.1|WP_039290019.1|717878_718880_-|tRNA-modifying-protein-YgfZ
MVNQHTAHQLPFASQLPFASTQLAATLISLDDWALATLVGPDTVKYLQGQVTADVGALPDDGHILCAHCDAKGKMWSNLRLFHHGEGFAFIERRNLRDVQLSELKKYAVFSKTTIAPDDNTILLGAAGAGIRDLLASVFSQLPDAEHPVVQHEGATLLHFAHPAERFLLVLSPEHSASLLEQLGDKVSLNDSRQWLTLDIEAGQPIIDSANSAQFIPQATNLQALNGISFSKGCYTGQEMVARAKYRGANKRALYWLAGKANKVPQAGDDLELQLGENWRRTGTVLAASQLQNGDVWVQAVLNNDLNAENTLRVRDDADSQLTVQPLPYEITD
>NZ_CP007744.1|WP_011092366.1|719115_719382_+|FAD-assembly-factor-SdhE
MEIDNKSRIHWACRRGMRELDIAIMPFFEHDYDTLNDSDKRAFVRLLQSDDPDLFNWLMNHGEPKDGELKRMISLIQTRNKDRGPVAM

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Crispr_ID: NZ_CP007744_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007744_4

1420729-1420830

Orphan

Consensus_repeat	Method
CGGCGGCCCGAAGGGCGGCGGGCAGGGATAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007744_4

>merge|NZ_CP007744|4|1420729-1420830|CRISPRCasFinder
CGGCGGCCCGAAGGGCGGCGGGCAGGGATAGCCTGCCGTAAAAAAAACGGAGCAATTTTTAACGCCGTTTACGGCGGCCCGAAGGGTGGCGGGCAGGGATAG

>NZ_CP007744|4|4|1420729-1420830|CRISPRCasFinder
CGGCGGCCCGAAGGGCGGCGGGCAGGGATAG	CCTGCCGTAAAAAAAACGGAGCAATTTTTAACGCCGTTTA
CGGCGGCCCGAAGGGTGGCGGGCAGGGATAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007744.1\|WP_039290719.1\|1429434_1430799_-\|peptidase-U62	unknown	unknown	gnl\|CDD\|182922
NZ_CP007744.1\|WP_011092851.1\|1421024_1421903_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP007744.1\|WP_039290703.1\|1412574_1413210_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NZ_CP007744.1\|WP_039290706.1\|1417561_1417933_-\|arsenate-reductase-(glutaredoxin)	unknown	unknown	gnl\|CDD\|239332
NZ_CP007744.1\|WP_048018364.1\|1420100_1420649_-\|glycine-cleavage-system-transcriptional-repressor	unknown	unknown	gnl\|CDD\|236935
NZ_CP007744.1\|WP_039290704.1\|1413209_1414247_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP007744.1\|WP_039290714.1\|1424484_1426590_+\|tRNA(Met)-cytidine-acetyltransferase	unknown	unknown	gnl\|CDD\|224361
NZ_CP007744.1\|WP_039294791.1\|1416821_1417529_+\|DnaA-inactivator-Hda	unknown	unknown	gnl\|CDD\|181224
NZ_CP007744.1\|WP_039290724.1\|1431400_1432159_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
NZ_CP007744.1\|WP_039290716.1\|1426622_1427888_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP007744.1\|WP_011092852.1\|1421919_1422957_+\|outer-membrane-protein-assembly-factor-BamC	unknown	unknown	gnl\|CDD\|236955
NZ_CP007744.1\|WP_011092849.1\|1419580_1420048_-\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|181857
NZ_CP007744.1\|WP_039290709.1\|1417947_1419411_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|227122
NZ_CP007744.1\|WP_039290702.1\|1411335_1412358_+\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	unknown	unknown	gnl\|CDD\|225911
NZ_CP007744.1\|WP_039290722.1\|1430963_1431386_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP007744.1\|WP_010307474.1\|1414600_1415227_+\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP007744.1\|WP_048018352.1\|1427954_1429400_-\|metalloprotease-TldD	unknown	unknown	gnl\|CDD\|182685
NZ_CP007744.1\|WP_011092854.1\|1424014_1424467_+\|DUF441-domain-containing-protein	unknown	unknown	gnl\|CDD\|225334
NZ_CP007744.1\|WP_011092853.1\|1423100_1423814_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
NZ_CP007744.1\|WP_039290705.1\|1415432_1416722_+\|uracil-permease	unknown	unknown	gnl\|CDD\|236744

Protein	Function_ID	Function_description	E-value
NZ_CP007744.1\|WP_039290719.1\|1429434_1430799_-\|peptidase-U62	gnl\|CDD\|182922	PRK11040, PRK11040, peptidase PmbA; Provisional.	5.19122e-130
NZ_CP007744.1\|WP_011092851.1\|1421024_1421903_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	2.34589e-180
NZ_CP007744.1\|WP_039290703.1\|1412574_1413210_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	9.55596e-127
NZ_CP007744.1\|WP_039290706.1\|1417561_1417933_-\|arsenate-reductase-(glutaredoxin)	gnl\|CDD\|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	4.76774e-57
NZ_CP007744.1\|WP_048018364.1\|1420100_1420649_-\|glycine-cleavage-system-transcriptional-repressor	gnl\|CDD\|236935	PRK11589, gcvR, glycine cleavage system transcriptional repressor; Provisional.	1.96117e-131
NZ_CP007744.1\|WP_039290704.1\|1413209_1414247_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP007744.1\|WP_039290714.1\|1424484_1426590_+\|tRNA(Met)-cytidine-acetyltransferase	gnl\|CDD\|224361	COG1444, COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only].	2.95697e-179
NZ_CP007744.1\|WP_039294791.1\|1416821_1417529_+\|DnaA-inactivator-Hda	gnl\|CDD\|181224	PRK08084, PRK08084, DnaA inactivator Hda.	8.68652e-172
NZ_CP007744.1\|WP_039290724.1\|1431400_1432159_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	6.26418e-48
NZ_CP007744.1\|WP_039290716.1\|1426622_1427888_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	3.4581e-33
NZ_CP007744.1\|WP_011092852.1\|1421919_1422957_+\|outer-membrane-protein-assembly-factor-BamC	gnl\|CDD\|236955	PRK11679, PRK11679, outer membrane protein assembly factor BamC.	0
NZ_CP007744.1\|WP_011092849.1\|1419580_1420048_-\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|181857	PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed.	2.33531e-122
NZ_CP007744.1\|WP_039290709.1\|1417947_1419411_-\|M48-family-metallopeptidase	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	0
NZ_CP007744.1\|WP_039290702.1\|1411335_1412358_+\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	gnl\|CDD\|225911	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism].	3.35996e-143
NZ_CP007744.1\|WP_039290722.1\|1430963_1431386_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	2.02301e-34
NZ_CP007744.1\|WP_010307474.1\|1414600_1415227_+\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	7.43582e-133
NZ_CP007744.1\|WP_048018352.1\|1427954_1429400_-\|metalloprotease-TldD	gnl\|CDD\|182685	PRK10735, tldD, protease TldD; Provisional.	0
NZ_CP007744.1\|WP_011092854.1\|1424014_1424467_+\|DUF441-domain-containing-protein	gnl\|CDD\|225334	COG2707, COG2707, Predicted membrane protein [Function unknown].	1.48425e-50
NZ_CP007744.1\|WP_011092853.1\|1423100_1423814_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	6.06598e-143
NZ_CP007744.1\|WP_039290705.1\|1415432_1416722_+\|uracil-permease	gnl\|CDD\|236744	PRK10720, PRK10720, uracil transporter; Provisional.	0

>NZ_CP007744.1|WP_048018364.1|1420100_1420649_-|glycine-cleavage-system-transcriptional-repressor
MPSSQEHYLVITAMGVDRPGIVNAITRHVSSCGCNIEDSRLAMLGKEFTFIMLLSGSWNAITLIESTLPLKGAEMDLLIVMKRTESQASQPTPSTVWVKVDVADSPHIIERFTDLFDSHQLNIAELVSKTQPAEGGKPPQLYIQIAAHSSATLDSSIIEPAFHQLCTELHAQGSISVVNYAR
>NZ_CP007744.1|WP_011092849.1|1419580_1420048_-|thioredoxin-dependent-thiol-peroxidase
MNTLKAGDIAPKFSLPDQDGEQVNLTDFQGQKVLVYFYPKAMTPGCTVQACGLRDNMDDLKKHGVEVLGISTDKSEKLSRFIEKEVLNFTLLSDEDHQVSEGFGVWGEKTFMGKTYDGIHRISFLIDENGKVEKVFDDFKTSNHHDIVLDYLKSA
>NZ_CP007744.1|WP_039290709.1|1417947_1419411_-|M48-family-metallopeptidase
MSIRLRKTVMSVLLGTLLAGNLLPAQADTQDRLPDIGTTAGGTLSINQELAMGDFYVRQLRAGAPLINDPLLSNYINQLGNRLVKQADSVRTPFHFYLIRNDDINAFAFFGGNVVLHSALFRYADSESELASVLAHEISHVTQRHLARSMESQQRSAPLTWVGALGSILLAMANPQLGMAALSGTLAGAQQGMITFTQSNEQEADRIGIQVLQRAGFDPQAMPNFLQKLADQSRYASRPPEMLLTHPLPESRLSDARNRANQMRPTPVQSSQDFLFAKIRTFGMYGSPDRPLNDDLLVQWEKGNVREQLAAKYGRAIQLYQAKKYDEARNVLQPLLSSAPDNPWFLDMMTDIDLGQNRAAQAIARLQNVPGMQANPVLQLNLANAYVEGKQPAAAGKILYRYTYAHPDDPNGWDLLAQTAAAQGQRAEELAARAESLALNGQLDQSIRLLSNASSLVKLGSLEQARYDARIDQLRQLQQRFRQYQKS
>NZ_CP007744.1|WP_039290706.1|1417561_1417933_-|arsenate-reductase-(glutaredoxin)
MTQPSTKASVTIYHNPRCSKSRETLALLQEHNIAPDVVLYLDTPPDAATLDQLIQQLGFSSARELMRTKEEIYQQLGLSDAALTEAQLIQAMVDNPKLIERPIVVAQGQARIGRPPEQVLEIL
>NZ_CP007744.1|WP_039294791.1|1416821_1417529_+|DnaA-inactivator-Hda
MILNTPAQLSLPLYLPDDETFASFYPGENASLLAAVNNALYQEHGSYIYFWSREGGGRSHLLHAACAELSRQERAVGYVPLDKRAYFVPDVLEGMEQLALVCIDNIESIAGDEAWEMAVFNLYNRIQETGRALLLITGDRPPRQLNIRLPDLASRLDWGQIYKLQPLSDDEKGEALQLRARLRGFELPEDVSRFLLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILGL
>NZ_CP007744.1|WP_039290705.1|1415432_1416722_+|uracil-permease
MTRRAIGVSERPPLLQTIPLSFQHLFAMFGATVLVPILFKINPATVLLFNGVGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVALIVQKAGTGWLNVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPADGASVDSTAVTISLATLAITILGSVLFRGFLAIIPILIGVLAGYALSFALGVVDLTPIREAHWFAMPTFYTPRFEWFAILAILPAALVVIAEHVGHLVVTANIVKKDLMRDPGLHRSLFANGISTVLSGFFGSTPNTTYGENIGVLAITKVYSTWVIGGAAILAILLSCVGKLAAAIQAVPVPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVHLGSTELKGMALATVVGIGMSLVFKVISLFRKEEEILDAPEENDTRS
>NZ_CP007744.1|WP_010307474.1|1414600_1415227_+|uracil-phosphoribosyltransferase
MKIVEVKHPLVKHKLGLMRENDISTKRFRELASEVGSLLTYEATADLATEKVTIDGWCGPVEVDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGIYRDEETLEPVPYFQKLVSNIEERMALVVDPMLATGGSMIATIDLLKKAGCHSIKVLVLVAAPEGIAALEKAHPDVELYTASIDKGLNEQGYIMPGLGDAGDKIFGTK
>NZ_CP007744.1|WP_039290704.1|1413209_1414247_-|phosphoribosylformylglycinamidine-cyclo-ligase
MTDKTSLSYKDAGVDIDAGNALVDRIKGVVKQTRRPEVMGGLGGFGALCALPQKYREPILVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTAASVITGIAEGCKQSGCALVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIIDGSKVQHGDVLVALAASGPHSNGYSLVRKVLEVSKTDPEQFELEGKSLADHLLAPTKIYVKSVLSLIEKVDVHAISHLTGGGFWENIPRVLPEGMQATIDESSWQWPAVFNWLQQAGNVSRHEMYRTFNCGVGMIIVLPAEQADEAVALLNSSGENAWKIGVITQTDAGDAVVIN
>NZ_CP007744.1|WP_039290703.1|1412574_1413210_-|phosphoribosylglycinamide-formyltransferase
MKNIVVLVSGHGSNLQALIDACKNGRLKGKIVAVFSNNAEAYGLVRAQDAAIPTCVLNPEDFADRAAFDAALANEIEQYEPALVVLAGYMRILSPEFVAQFAGKMLNIHPSLLPKYPGLHTHRKALENGDREHGTSVHFVTDELDGGPSVLQAKVPVFSDDTEESLSERVKTHEHTIYPMVINWFLNGRLVMRDNEAWLDSVRIPPQGYAA
>NZ_CP007744.1|WP_039290702.1|1411335_1412358_+|HoxN/HupN/NixA-family-nickel/cobalt-transporter
MLLPVLRNHPRSAMLLILLLSANLVSWCWALVVFQNNGALIAACLLAWSYGLRHAVDADHIAAIDIVTRKMMQQGQRPLGVGAWFSLGHSTIVILATVAIAATAAAFQKDIAWFHDVGGIIGTSVSAFFLLAMALVNLVILRGVWRNFRALKRGEPLQNRDEMGASGGMMSWLFRSTFRMVDKSWHMYLVGFLFGLGFDTATEIGVLGISAASASLGVSIWSILIFPALFASGMALVDTLDNILMVGAYGWAFNKPQRKLYYNMTITGASVVVALFIGGIEALGLLVDKFDLQGGAWSVVSGLNDSLGNAGFIVIGIFVVFWCISMLIYRWKDYDSLVVS
>NZ_CP007744.1|WP_011092851.1|1421024_1421903_+|4-hydroxy-tetrahydrodipicolinate-synthase
MFTGSIVALVTPMDAKGAVDRASLKKLIDYHVASGTSAIVSVGTTGESATLSHDEHGDVVLLTLELSDGRIPVIAGTGANATAEGVSLTKRFHGTGVVGCLTVTPYYNKPTQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDMLPETVARLSEVKNIVAIKEATGNLSRVSQIQELVSEDFILLSGDDASGLDFMQLGGKGVISVTANIAAREMAELCRLAAQGNFVEARRLNQRLMPLHQKLFVEPNPIPVKWACKELGLMATDTLRLPMTPLTDSGRTVMGQALKQAGLL
>NZ_CP007744.1|WP_011092852.1|1421919_1422957_+|outer-membrane-protein-assembly-factor-BamC
MSYSLQKSMVAKVVGLSLVMLLAACSSDQRYKRQVSGDESYLKAPAQHVLNTPAGMILPVQNGDFDIPPVTLNGAVGKELDIRPPVQPLALLNGSRTQTSGDTATLLLENSAQNSQIWSQVIRVLQDNAFTIANRQDASQTLTTDWISWPREDENVPYQGRYQISVQQQGYQVALIVKLLGLQLNGQPVTTSDQTQRYAGLMLNVLSNGLDSQATARENALANRTIGSLDVQSGADDTGLPLLIVRGPYTVVWDRLPVALDKIGMKVNDRSRPQGSVSVTYRAPSGGTWDDLGAKNPELPNGDYKLQVGDLDNRSSLQFIDSKGHTLTQSQNDALVAVFQAAFSK
>NZ_CP007744.1|WP_011092853.1|1423100_1423814_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MQKLAELYRGKAKTVYTTEDPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNHFIMSKLEEAGIPTQMVSLLSDNEVLVKKLEMVPVECVVRNRAAGSLVKRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCKTFGWVSEENLARMKELSYKANDVLSKLFGDAGLILVDFKLEFGLFNGEVVLGDEFSPDGSRLWDKETLNKMDKDRFRQSLGGLIEAYEEVAHRIGVKLD
>NZ_CP007744.1|WP_011092854.1|1424014_1424467_+|DUF441-domain-containing-protein
MAYIDPTLLILLVLAGLGIISHNMTVTLAILVLLAIRITPLNSYFPWVEKYGLSIGIVVLTIGVMAPIASGKITASEVMHSFLHWKSLLAILIGVAVSWLGGRGVSLMSNQPSVVAGLLVGTVMGVALFRGVPVGPLIAAGLLSLLIGKT
>NZ_CP007744.1|WP_039290714.1|1424484_1426590_+|tRNA(Met)-cytidine-acetyltransferase
MILRDFLHSQQQQQRYGIRRLLVLSGESSWCEEQAMVLSRQSTGDWLWVSEHAPDSVASLPASRVRTLLGREFHHAVFDARSGVDVEALAMLSGTLQAGSWLIMLVPSWQVWPTLPDQDSLRWSEHAQPIATPHFIQHFQRQLLADDDVVLWQQGQPLVIQPLAVRSDWQPVQGEPTVRQQHILHELSATESGVFVIIAPRGRGKSTLAGMLTQRSRGTCWTTAPSRSATDILQQHARGDAQFWAPDALLAHCHLHGAPDIDWLLIDEAAAIPSSVLTALLPYFPRILMTTTVQGYEGTGRGFLLKFCAALPQCRVFSLDDPLRWAANDPLERVLDQALLFNEPASLHFPLNPTDGALTLPSADLDIRTERADDWLTHPERLTWCYALLCSAHYRTSPLDLRRMMDALGMHIVSAQVAGDIRGVLWLVEEGGLSDSLAHDVWAGRRRPRGNLVAQSLAAHAGLWNAPTLHARRVSRIAVASSSRRQGIGRALIADQTREAQKQALDYLSVSFGYQPDLWAFWQSCGFQLVRIGSHLEASSGCYSAMAVLPLSEAGHKLAQQGSQQLARDWHWLQRMIPLSLALPQTENTDLGTENIELNDDDWRELVGFAFAHRPMEASFAAICRLLIHTSLPLPALRLLAETPGEGEQTAATLGLTGKKALLKRWREETANALIDLDAQRGERWRLWVLPDDAAEDALHP
>NZ_CP007744.1|WP_039290716.1|1426622_1427888_-|thioredoxin
MSDAIITASDTSLDTLLNNSDKPILLDLWAPWCQPCKTLAPLLNTIADNTPDNLTVAKLDVEQYPAFMQRFGVRGIPTLLLFKNGQEISRQIGVKTLAQLRGWLESHEIAIQNTAQPLADTHVTWSTFYGDASLHTFLHQRLRQHAADGNIEHAFSPYWQDNKGSVSAALAHNADIRIFERITGLPASLGLLLEKLPSTTPEQVDALFAALAPGKTVDGVALQWLHHWLSHEGNPWSDWLVDETVDGLRQQWVQAISRLLAGEAVAESEWTALHQQAISWEEKAATELGLEKNIATILASLSPPPAASDADSWRSISTTLGFALAQILQIKDGWSREERATPDKRFRWFQAQEDATPSKKLTDEQITALREQWLQENPDFSAKEDAFYQRYSQLSEAQKIPLQETLWELLRRAPAFKSQLN
>NZ_CP007744.1|WP_048018352.1|1427954_1429400_-|metalloprotease-TldD
MAIHASRAGVSPALSAFSLETTEITHALNHIMQRQVDYADLYFQRRQQEGWQLENGIVRPTGFSRDQGVGVRAVSGEKTAFSYTNDLRPQAILQAANTVREISRRGQTASVALPASLPHGTTALYPSDNPLLAVTEEHKRQLLLSIDRQARARDPRVTQVTAYLNASHETILIARHDGRLATDVRPLVNLVINVVVEQQGRRENGSSGGGRRLDYRFFADETVSQWVNQAVDQALNNLDASPVPAGTYSVILGAGSPGILLHEAIGHGLEGDFNRKGSSAFSSLLGERVAAPGITVVDDGTLANRRGSLHVDDEGTPSQCTTLIEDGILRGYLQDSLNARLMNTALTGNARRASYSALPLPRMTNTYMLAGQYPAEEVIASVKNGLYAVGFGGGQVDISSGKYVFSTTEAYLIENGRVTRPVKGATLIGHGPEALLHVAMVGNDLALDDGNIACTKEGQSLPVSVGQPTLRIDNMTVGGSQ
>NZ_CP007744.1|WP_039290719.1|1429434_1430799_-|peptidase-U62
MPSLDESPVLATPQTDTLQSLAGDVLDFAAAKGASQAVVSISQGNRRTIRVRNGDIDTLTQNQSNFLSVTVYFGQRAGTVSSTLFSKEALQDAVDAASTLAKYADEDPCSGLPEAQHFARNIYDLALHNADTLTVEQALSLALRAEQAANTTHEHGYSESTEITSQQGDFILANSAGFSAGYPTSLHTLWSHAIARNDTQRQQGFWHTSGRAPSLLASPEAIGHTAAQRAVAQLGARKLSTRRSPVLFEAPVAHSLIHHLVGALSGAALYRSTSFLGQCLGEAITAPHLSLYENPFIPGALASACFDAEGVATAPRHVIHDGIAQGYFLSSYSARRLGLTTTGHAGGAYNLSVSSNQSRAGDDLPALLRQMHTGLLVTTLLGHGLNPMTGDYSQGVAGFWVENGEIQYPVEEITIAGNLKTLLLHCVALGADIHTQGNLSCGSLLIEEMQIAGQ
>NZ_CP007744.1|WP_039290722.1|1430963_1431386_-|biopolymer-transporter-ExbD
MSMSSPFESQEDALLNDINMTPFIDVMLVLLIVFMITLPVINHAVKVDLPRASVEKIKKDPQAVDIAITATGQINWNKEAVDDAQLIAKLDAASAEGTHPNIRLFADQAVEYGRVAYVMTNAQQRGLSKIDFVLQPVKAP
>NZ_CP007744.1|WP_039290724.1|1431400_1432159_-|MotA/TolQ/ExbB-proton-channel-family-protein
MNTLDIHHFWQQGDVVTHSVAIILLIMSLLSWTVMLLKARQLFALNKSVQYSRNTFWQATSLQESVEKFGKQRFNPFRDLVIEGHALLKHPHKFSSTLGGHVDLSDWLVRGLSNTLDTNSGKLQSGLGTLASIGSTAPFIGLLGTVWGIFHALQTISTIGQPDLAQVAGPVGEALIMTAFGLFVAIPAVLGFNAINRRNRIVLHAMNRFAHDLHAYLLTGARVDTSITDLTSITDQNSAARYEPTHPVERSA

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Crispr_ID: NZ_CP007744_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007744_5

2186954-2187056

Orphan

Consensus_repeat	Method
GCGACGTTGTAAAATGCCTTTGGCATTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007744_5

>merge|NZ_CP007744|5|2186954-2187056|CRISPRCasFinder
GCGACGTTGTAAAATGCCTTTGGCATTTTATTATGGTGGGCTAAAGCACCACACCCTTCGGGCCGTCGCAAGCGACGTTGTAAAATGCCTTTGGCATTTTATT

>NZ_CP007744|5|5|2186954-2187056|CRISPRCasFinder
GCGACGTTGTAAAATGCCTTTGGCATTTTATT	ATGGTGGGCTAAAGCACCACACCCTTCGGGCCGTCGCAA
GCGACGTTGTAAAATGCCTTTGGCATTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007744.1\|WP_011093557.1\|2187464_2188400_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NZ_CP007744.1\|WP_011093561.1\|2190723_2191014_+\|DUF333-domain-containing-protein	unknown	unknown	gnl\|CDD\|225584
NZ_CP007744.1\|WP_011093546.1\|2175780_2176005_+\|envelope-stress-response-membrane-protein-PspB	unknown	unknown	gnl\|CDD\|236526
NZ_CP007744.1\|WP_011093565.1\|2195983_2198575_+\|YdbH-family-protein	unknown	unknown	gnl\|CDD\|182654
NZ_CP007744.1\|WP_039292157.1\|2183040_2183760_-\|murein-tripeptide-amidase-MpaA	unknown	unknown	gnl\|CDD\|182582
NZ_CP007744.1\|WP_011093548.1\|2176545_2177943_+\|YcjX-family-protein	unknown	unknown	gnl\|CDD\|225648
NZ_CP007744.1\|WP_011093549.1\|2177939_2178983_+\|TIGR01620-family-protein	unknown	unknown	gnl\|CDD\|235449
NZ_CP007744.1\|WP_039292153.1\|2183925_2185542_+\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173869
NZ_CP007744.1\|WP_011093564.1\|2194056_2195610_-\|PAS-domain-containing-methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP007744.1\|WP_011093563.1\|2192158_2193712_-\|PAS-domain-containing-methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP007744.1\|WP_011093547.1\|2176004_2176370_+\|envelope-stress-response-membrane-protein-PspC	unknown	unknown	gnl\|CDD\|182656
NZ_CP007744.1\|WP_039292150.1\|2185681_2186665_+\|zinc-transporter-ZntB	unknown	unknown	gnl\|CDD\|181941
NZ_CP007744.1\|WP_011093556.1\|2187174_2187348_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182059
NZ_CP007744.1\|WP_039292163.1\|2179140_2180685_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349927
NZ_CP007744.1\|WP_080641360.1\|2188686_2189214_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|314909
NZ_CP007744.1\|WP_039292161.1\|2180821_2182390_+\|transcriptional-regulator-TyrR	unknown	unknown	gnl\|CDD\|236769
NZ_CP007744.1\|WP_011093560.1\|2189892_2190165_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007744.1\|WP_011093562.1\|2191046_2192039_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240659
NZ_CP007744.1\|WP_011093552.1\|2182457_2182961_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_CP007744.1\|WP_011093559.1\|2189275_2189536_+\|colicin-transporter	unknown	unknown	gnl\|CDD\|288352

Protein	Function_ID	Function_description	E-value
NZ_CP007744.1\|WP_011093557.1\|2187464_2188400_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	0
NZ_CP007744.1\|WP_011093561.1\|2190723_2191014_+\|DUF333-domain-containing-protein	gnl\|CDD\|225584	COG3042, Hlx, Putative hemolysin [General function prediction only].	4.05822e-10
NZ_CP007744.1\|WP_011093546.1\|2175780_2176005_+\|envelope-stress-response-membrane-protein-PspB	gnl\|CDD\|236526	PRK09458, pspB, envelope stress response membrane protein PspB.	1.09583e-38
NZ_CP007744.1\|WP_011093565.1\|2195983_2198575_+\|YdbH-family-protein	gnl\|CDD\|182654	PRK10695, PRK10695, YdbH family protein.	0
NZ_CP007744.1\|WP_039292157.1\|2183040_2183760_-\|murein-tripeptide-amidase-MpaA	gnl\|CDD\|182582	PRK10602, PRK10602, murein tripeptide amidase MpaA.	4.1201e-165
NZ_CP007744.1\|WP_011093548.1\|2176545_2177943_+\|YcjX-family-protein	gnl\|CDD\|225648	COG3106, COG3106, Predicted ATPase [General function prediction only].	0
NZ_CP007744.1\|WP_011093549.1\|2177939_2178983_+\|TIGR01620-family-protein	gnl\|CDD\|235449	PRK05415, PRK05415, hypothetical protein; Provisional.	1.38937e-172
NZ_CP007744.1\|WP_039292153.1\|2183925_2185542_+\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP007744.1\|WP_011093564.1\|2194056_2195610_-\|PAS-domain-containing-methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.31169e-62
NZ_CP007744.1\|WP_011093563.1\|2192158_2193712_-\|PAS-domain-containing-methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.17633e-66
NZ_CP007744.1\|WP_011093547.1\|2176004_2176370_+\|envelope-stress-response-membrane-protein-PspC	gnl\|CDD\|182656	PRK10697, PRK10697, envelope stress response membrane protein PspC.	2.08007e-74
NZ_CP007744.1\|WP_039292150.1\|2185681_2186665_+\|zinc-transporter-ZntB	gnl\|CDD\|181941	PRK09546, zntB, zinc transporter ZntB.	0
NZ_CP007744.1\|WP_011093556.1\|2187174_2187348_+\|hypothetical-protein	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	1.83284e-07
NZ_CP007744.1\|WP_039292163.1\|2179140_2180685_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349927	cd05678, M20_dipept_like, uncharacterized M20 dipeptidase. Peptidase M20 family, unknown dipeptidase-like subfamily (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine.	0
NZ_CP007744.1\|WP_080641360.1\|2188686_2189214_+\|hypothetical-protein	gnl\|CDD\|314909	pfam12106, Colicin_E5, Colicin E5 ribonuclease domain. Colicin is a protein produced by bacteria with Col plasmids. Its function is to attack E. coli through actions on its inner membrane ion channels or through ribonuclease or deoxyribonuclease actions. The C terminal domain is the ribonuclease domain. It specifically cleaves tRNA anticodons which recognize codons in the form NAY (N:any nucleotide, A:adenosine, Y:pyrimidine) which corresponds to Tyrosine, Histidine, Asparagine and Aspartic Acid. E5-CRD can be referred to as an RNA restriction enzyme that specifically recognizes and cleaves single-stranded GU sequences.	1.07029e-39
NZ_CP007744.1\|WP_039292161.1\|2180821_2182390_+\|transcriptional-regulator-TyrR	gnl\|CDD\|236769	PRK10820, PRK10820, transcriptional regulator TyrR.	0
NZ_CP007744.1\|WP_011093562.1\|2191046_2192039_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240659	cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains. D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	0
NZ_CP007744.1\|WP_011093552.1\|2182457_2182961_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	7.53716e-110
NZ_CP007744.1\|WP_011093559.1\|2189275_2189536_+\|colicin-transporter	gnl\|CDD\|288352	pfam11480, ImmE5, Colicin-E5 Imm protein. Imms bind specifically to cognate colicins in order to protect their host cells. Imm-E5 is a specific inhibitor protein of colicin E5. It binds to E5 C-terminal ribonuclease domain (CRD) to prevent cell death. The binding mode of E5-CRD and Imm-E5 mimics that of mRNA and tRNA suggesting an evolutionary pathway from the RNA-RNA interaction through the RNA-protein interaction of tRNA/E5-CRD.	4.77464e-50

>NZ_CP007744.1|WP_039292150.1|2185681_2186665_+|zinc-transporter-ZntB
MESFAGKELQHSGAVHAYQLDGRGGITPIGEQDVVNSEKPCWLHLDSTVPASARWLNKTLVVPDSVRTALAGESVRPRVTRLGEGTLITLRSINLNANARPDQLVAVRVFITDKLIISTRRRKILAIDEILTDLKEGNGPTDSGNWLVSIAEALTDHTSEFIDDLHEKIIDLEDDLLEQKIPPRGELALIRKQLIVLRRYMTPQRDVFSRISGEKLPWMQDDDRRRMQEIADRLGRGLEDLDASVARTTVLSDEITALMTEAMNRRTYTMSLLAMVFLPTTFLTGLFGVNLGGIPGGDAPFGFFTFCLMLVILVGGVAWWLKRSKWL
>NZ_CP007744.1|WP_039292153.1|2183925_2185542_+|peptide-ABC-transporter-substrate-binding-protein
MHYGYSAFYAALMAALAGNAVAAQVPAGTVLAEKQEIVRHIKDEPASLDPIKAVGLPEAQVARDLFEGLVNQDAKGNIVPGVALRWQTTDNRTFIFTLRDNARWSNGEPVTANDFVYSWRRLVTPENSSSFAWFARLAGIQNAEQILAGKMPVDQLGVSAVNDHTLKVQLSKPVPYFVSLTANFSLFPVHQATVEKFGNDWTKPGNLVGNGAFKLDHRVVNEKLVLTQNQYYWDNANTRLTKVTFVPINQESNATKRYLSGDIDITESFPKNLYQKLLKDLPGQVYTPEQLGTYYYAFNTQRAPTNDVRVRKALSYAIDRKVIAEKVLGTGEKPAWHFTPDVTAGFKPTESLLQQYSQDELDAQAKALMAAAGYGPNNPLKLSLLYNTSESHQKIAIAVASMWKKTLGVDVRLSNQEWQTYIDSRNSGNFDVVRASWVGDYNEPSTFLSLMTSHHSGNIARFKSANYDRVLDEAGNQTNPQALNADYNRAEQILMDEAPIAPIYQYTNGRLIKPWVKGYPITNPEDVAYSHMLYIEKH
>NZ_CP007744.1|WP_039292157.1|2183040_2183760_-|murein-tripeptide-amidase-MpaA
MENTIIPLQARQQRGNLPSLGEPYGKSLLGAPLLYFPAELAPSESGLIIAGTHGDETAAVVALSCALRTLFSGQRRHHVVLAVNPDGCQLGLRANANGVDLNRNFPASNWQPGNTVYRWNSAADERDVELSTGETAGSEPETKALCTLIEKLNPHWVVSFHEPLACIEDPHGSELGQWLAQQCELPLVSSIGYDTPGSFGSWCADRSLHCITAELPPISADAASECYLNAMVALLSQQF
>NZ_CP007744.1|WP_011093552.1|2182457_2182961_-|thiol-peroxidase
MSQNVHFQGNPVPVAGSFPAKGSKAPAFTMVAKDLSDASLSNYAGKRKILNIFPSIDTGVCAASVRKFNQLGSELDNTVVLCISSDLPFAQSRFCGAEGLNNVVVLSTLRGGEFKESYGVAIADGALKGLTARAVVVLDENDNVLHSELVNEITTEPDYDAALAVLK
>NZ_CP007744.1|WP_039292161.1|2180821_2182390_+|transcriptional-regulator-TyrR
MHLEVICEDRIGMVRELLDLLASRHIDLRGIEIASIGRIYLNFATLDFDDFRPLMTEIRRIESVSDVRTVAFMPSEREHRALNALLESMPEPVFSLDMKGTPELFNPAALALFEQSAETISELTIATMIPSFNFANWLEKSSSIVAERVVIRGQDFLLEMTPVRLEDDAGNVATAGALVMLKSAARMGRQLQNLAVNDENEFDHIVAASPKMRQVVEQARKLAMLDAPLLIVGDTGTGKDMLARACHLRGPRGKNPFLALNCAALPDDVMESELFGHASGAYLNAQEGKKGFFEQANGGSVLLDEVGEMSAQMQTKLLRFLNDGTFRRVGEDHEVHVDVRVICATKKNLLELVQRGEFREDLYYRLNVLTLMLPPLRERPADIMPLAELFVARFADEQGIPRPKLAADVEHFLPQYGWPGNVRQLRNTIYRALTQLHGGELHMQDIDLPAFSIDAPQDETLLDGSLDDINKRFERSVLTRLYQSYPSTRKLAKRLGVSHTAIANKLREYGLSQRKPAGDDEE
>NZ_CP007744.1|WP_039292163.1|2179140_2180685_+|M20/M25/M40-family-metallo-hydrolase
MIPGKKLTLAALSLATSILCLPASAQLVLAPADAERYAQNSFPEYLELLTLQNDAAVPADIQRNADWLEKAFQKRGFTTQTLTNGDKPLVYAEFGAAKSDRKTILFYMHFDGQPVNPSEWQTPPWQPVLKEKDAAGKWQTLPESRLLKGDMNPEWRIFARASADDKGPIVMFLAAMDAMKEKGVEPAVNIKVLLDSEEEKGSPGLTTVMADHLMLLKSDGMVIYDGAMPSSNRPGINFGNRGSIQIDMTVFGANAAAHSGGYGNVIPNPVQNLATLLASMKDADGKVTIPGYYDRVTLSDSDKKQVAETSPPAGSLEKRFGVAQLDKVAGNAAEAVQYPSLDILGIKAGETGKKASNAIPSTATASVNIRTVPETPPDDMYALLRQYIASKGFHIIAGESPTQAEREQYPHLISLHLTAYPSSAYAARTEIDSPLGHWAVATTTAPRGIAPEKNRMMGGTLPMSGAVSVLKVPYVIVPLVNADNNQHSFDENLRLGNYLEGIRTIVAMATTPLS
>NZ_CP007744.1|WP_011093549.1|2177939_2178983_+|TIGR01620-family-protein
MNEPLKPRVTFDDVSPQEPQPQLRAGLAFDEQSSTPFSPISREEEVPEEGAAEEAISAALRPKRSLWRRMVMAGVALFGISALAQGVQSLHNAWVQQDWIALGGITAGSLIVAAGVGSLAVEWRRLYRLRERAEERDMARDLLHSHGVERGREFCEKLARQAGLDSGHPAIQRWQASLHETHNDREVLELYARLVQPVLDTQARREISRSAAESTLMIAVSPLALVDMAFIAWRNLRLINRIAALYGIELGYFSRIRLFRLVLINIAFAGASELVREIGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAMELCRPLPWLDDKPRLGDFRRELIGQVKETLQKGR
>NZ_CP007744.1|WP_011093548.1|2176545_2177943_+|YcjX-family-protein
MSRLQNEINSLVNRSVDRHLRIAVTGLSRSGKTAFITAFVNQLLNTHSGAHLPMFSPAREERLLGVKRVPQRDLGVPRFAYDEGMAALYGSPPDWPTPTRGVSEIRLALRYRSKDSLLRHFKDTSTLYLEIVDYPGEWLLDLPLLEQTYLSWSQQMSGLLQGGRIEWAKPWLALCEKIDPLAPADENQLAEVAQAYTDYLYRCKQEGLHFIQPGRFVLPGDLAGAPVLQFFPWPQVNNIGEAKLAQADEKTNIGMLRKRFDYYCQSVVKGFYKDHFVRFDRQIVLVDCLQPLNSGIHAFNDMRLALTQLMQSFHYGKRTLFRRLFSPCIDKLMFAASKADHITADQHANLVSLLQQLVQEAWQNAAFEGIDMRCEGIASIQSTQSGVVDHQGQKIPALKGHRLSDGQSLTVYPGEVPARLPGAAFWQTQGFHFDQFRPREMTVDTPLPHIRLDTVMDFLLKDKLR
>NZ_CP007744.1|WP_011093547.1|2176004_2176370_+|envelope-stress-response-membrane-protein-PspC
MKNTWSGKTLYRIPEEGMLKGVCAGLARYFDVPVKLLRIIVVLSMFFGLFFFTIVAYIILTFMLDPAPAGMGFEDEKAARTPSQLLDEADATLQASEQRLRNIERYVTSDTFGVQNRFRHL
>NZ_CP007744.1|WP_011093546.1|2175780_2176005_+|envelope-stress-response-membrane-protein-PspB
MSALFLAIPLTIFMLFVAPIWLWLHYSQRKNSAQLGQNDMQRLTRLTEESSRMRERIRALEDILDAEHPDWRKS
>NZ_CP007744.1|WP_011093556.1|2187174_2187348_+|hypothetical-protein
MLMQGATDYLQADTVPIEPIPIVPNDPSPYPLPDPPPIPDPPTGPEHEPVTEPPQDR
>NZ_CP007744.1|WP_011093557.1|2187464_2188400_-|tRNA-2-thiocytidine(32)-synthetase-TtcA
MSENQQTNQKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMVCLSGGKDSFTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHILPQYLDNIGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSDDGKHIVIRPLAYCREKDIERFAEARQYPIIPCNLCGSQPNLQRQVIKDMLRDWDKRHPGRIETMFSAMQNVVPSHLADHALFDFKNIRHGSDVVDGGDLAFDREELPLQPAGWQPEEDDDASPITRLDVLEIK
>NZ_CP007744.1|WP_080641360.1|2188686_2189214_+|hypothetical-protein
MLNDPSETMFVLGDVYKEQALEYYGYLRSELLKSKELISNAEKSLIIALESRVKAEQDKKSADQKLKDEQEKDKGKAPELKLDDKIREQLGNRGWTEQDVRDTVSKGAKGSAEDKCSPKKTPPDFLGRNDPASVYGEFGKYIVVNDRTGEVVQFSDKSDPEWVDDSRINWGDKNE
>NZ_CP007744.1|WP_011093559.1|2189275_2189536_+|colicin-transporter
MKLSPKAAIEVCQEATKRNLPIGMIEGGHWLNPGFQPDGNTRWDGFDKLTDKSEIKKSNDNAIENINDDSSKGYNAFIITIVGFSN
>NZ_CP007744.1|WP_011093560.1|2189892_2190165_-|hypothetical-protein
MSNQLLSGWIAFRDLNDTDKALFKSTVHLLGVTYSPLFVATQVVSGTNYSFLTKGTVTSPEAPLRIVKIHVYKPLSSEAHITKIEEVLPQ
>NZ_CP007744.1|WP_011093561.1|2190723_2191014_+|DUF333-domain-containing-protein
MKFLPWLCTAAALLLAGCSNHSENAAVAQQDAMQNDDRSTAVLLKSSSPVDVNCTLIGGTMASARQLDGMNVGACQLANGKRCSEQSVMNGSCPAG
>NZ_CP007744.1|WP_011093562.1|2191046_2192039_-|2-hydroxyacid-dehydrogenase
MKLAIYSTKQYDRKYLEQVNQQFGYELEFFDFMLTSRTAKTAAGCQAVCIFVNDDGSRDVLTELAGLGIKTLALRCAGFNNVDLEAAKELGISVVRVPAYSPEAVAEHAVGLMLTLNRRIHRAYQRTRDANFSLEGLIGFNMHNRTAGIIGTGKIGIATMRILKGFGMRLLAFDPYPNPQALELGAEYVDLKTLYANADVISLHCPLTPENHHLLNQAAFAQMKNGVMIVNTSRGGLIDSQAAIDALKQQKIGALGMDVYENERDLFFADKSNDVIQDDIFRRLSACHNVLFTGHQAFLTEEALISISQTTLQNLKDISQNVPCANLVTP
>NZ_CP007744.1|WP_011093563.1|2192158_2193712_-|PAS-domain-containing-methyl-accepting-chemotaxis-protein
MRKNFPVSDIQYLLDEKAKLMSVTTTDSHITYANDDFIDASGYDFEEILHQPHNIVRHPDMPPLAFADMWATLKAGKIWTAVVKNRRKSGDYYWVKASTTPLMKEGKITGYMSVRTRVSQEEIRQAEALYHQMNENKLKNRRLYQGLLIYKGPLKFLSLFNVIPVRWRIRSYVFLFMLFALLFLLATLPLTTPLFVFVLALLAGATITSELLVQHLAKPLEKILRQAINSASGQADNSFQLNRVDEVGMLLRAVNQSGMNFRTFVDDVNGKLAELRHACGEIASGNYTLSQRCEDTAQSLQSTASSMEELTATIQSNASATQLATRCANDANQAADAGEKAVNQVTETMATMTRSSKEITDIISVLDNLAFQTNILALNAAVEAAHAGEQGKSFAVVAGEVRILAQRSAAAAKDIAEIIDTTIANIHTSDKLVNHTSQSMQNILTQVQQVTQLVNQISLATQEQSQGLGQINSAVNNIDELTRQNTILATHSSSAINSLEQQISTMSEAVSVFSIPR
>NZ_CP007744.1|WP_011093564.1|2194056_2195610_-|PAS-domain-containing-methyl-accepting-chemotaxis-protein
MRNNTPVTDHQLPLSEKTRLMSVTTPESHITYANKDFIDVSGYTTDELMGQPHNLIRHPDMPPAAFADMWKTLRAGNIWTGIVKNRCKNGDHYWVKSSTTPLRKGGEITGYMSVRTAASPDEIRQAETLYASANEGKLKHRTFHHGLLIYTGPLRILSLFKTMPLRWRIRSYFLLFSLIPLIAAYSLLAGTALASVLFPLLIACCFVSGELLVHHVARPIEQILAQAMRSAAGQADNLTQLNRVDEIGMLMRAVNQSGMNFRTFVDDVNTNLSELKNACNEIAQGNHTLAQCCEETEKSLQQTAASVEQLTATIKSNAEASLQASIYTQDVNQAVNSGEQAVSQVSDTMETITRSSERITDIVSVMDNLAFQTNILAVNAAVEAAHAGEQGKSFAVVASEVRSLAQRSASSSSDISTIIDETLNSIRTGEQQVSHTHKSMSNILLQVQHVTNLMNEISLATQEQSLGLEQINEAVNRIDELTHQNTALASQSHSATDHLQQQISSMVQAASVFSLSR
>NZ_CP007744.1|WP_011093565.1|2195983_2198575_+|YdbH-family-protein
MIKKQALPIAFLLAALLFLSWRALPQWLPRLAEIWLPAGLSLTVNGSPGWQGGGLHSAGFSITAGECTLFDVRNMTLRWHSWRWHADIDAVTLNSDCLQHVPAGNSTEPAVQLSQWQRRLPAATIQVKTFTLQPWQDYAGQVRFSSDGKQQQTLDYQGDQLAFRAELNDTRLTLHESTLATPAGFVRLQVSGEMELADTLDAAPVRGRLTGKLDSGQTPDPLSLLLDWHKQQGELVLNAANDETPLISLPWQLTDDVIQVINGVWRWPYADQPLSGQVAMTLQHWRQGLDATTINARLNMLTQGHNGKANAVLVLGPGNIGLLNSELRFQLTGQANLPALSLTATLPGILQGSILNPELSLLPGALLRAWGTPAPQIYLEEARWPLAGVRISATGVNGRLQAIVKAREAYWGRFNLHLDGQAQDFWPDQGEWQWRYWGSGRLPPLKGQWDVAGRGRWQDTLIEVSQLSSGLDQLGYGIVTVHQPRLTITEPIRWQRARSGEHFQGALQLASERAHFSNGGYLPPSLLTLEMQGRSPNDFQLQGQLQAEDIGPVRLRGRWDGERLRGGAWWPIQPLKVFQPLLSPLLKMNIRTGQFYAQAAFSAARKEGFSAGGHWVVKNGGLWLQDGEVSGVNFVLPYRLKDQRWQLGVKQPVTLRIDVLDNLFRMNNIRVDLQGFYPYSERRPLIMSQADMDVLNGHVGLSTLRWPQREPALLTVKSVDLSELITVVKQKQFALSGRVSGTLPLNFNHPTTLIEGGRITNDGFLTLRLDNQLADELASKSLAGGAAIGWLRYLEIGRSYATLDLNNQGELTLTSRVQGKNPQLSAKRQVILNYRHQENIFQLWRSLRFGDNLRDTLEQQANE

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Crispr_ID: NZ_CP007744_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007744_6

3953088-3953183

Orphan

Consensus_repeat	Method
GCGCAGCAACGGCCCGAAGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP007744_6

>merge|NZ_CP007744|6|3953088-3953183|CRISPRCasFinder
GCGCAGCAACGGCCCGAAGGGTGACAGACAGGGTTTCCGCCATAAAAAAACGTCAGGAACATTTTTCAACGTTGCGCAGCAACGGCCCGAAGGGTG

>NZ_CP007744|6|6|3953088-3953183|CRISPRCasFinder
GCGCAGCAACGGCCCGAAGGGTG	ACAGACAGGGTTTCCGCCATAAAAAAACGTCAGGAACATTTTTCAACGTT
GCGCAGCAACGGCCCGAAGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007744.1\|WP_039293416.1\|3959991_3961344_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP007744.1\|WP_011095074.1\|3961459_3964261_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP007744.1\|WP_155242711.1\|3957460_3957628_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007744.1\|WP_039293407.1\|3953308_3954604_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP007744.1\|WP_039296628.1\|3942144_3942891_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|182051
NZ_CP007744.1\|WP_039293393.1\|3946287_3947178_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP007744.1\|WP_039293414.1\|3956566_3957379_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP007744.1\|WP_011095070.1\|3954702_3956340_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP007744.1\|WP_011095075.1\|3964351_3965497_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NZ_CP007744.1\|WP_039293391.1\|3944426_3945986_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340890
NZ_CP007744.1\|WP_080708296.1\|3941146_3942136_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293806
NZ_CP007744.1\|WP_039293404.1\|3949580_3950657_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238562
NZ_CP007744.1\|WP_039295227.1\|3948812_3949490_+\|type-1-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|153235
NZ_CP007744.1\|WP_039293401.1\|3947346_3948765_+\|coniferyl-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143451
NZ_CP007744.1\|WP_039293390.1\|3943243_3944383_-\|glycoside-hydrolase-family-88-protein	unknown	unknown	gnl\|CDD\|226678
NZ_CP007744.1\|WP_039293405.1\|3950662_3952855_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP007744.1\|WP_039293388.1\|3940115_3941048_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176153
NZ_CP007744.1\|WP_011095076.1\|3965673_3966558_-\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|183197
NZ_CP007744.1\|WP_011095077.1\|3966648_3967419_-\|2-dehydro-3-deoxyglucarate-aldolase	unknown	unknown	gnl\|CDD\|182547
NZ_CP007744.1\|WP_011095072.1\|3957703_3959941_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797

Protein	Function_ID	Function_description	E-value
NZ_CP007744.1\|WP_039293416.1\|3959991_3961344_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP007744.1\|WP_011095074.1\|3961459_3964261_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP007744.1\|WP_011095076.1\|3965673_3966558_-\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|183197	PRK11559, garR, tartronate semialdehyde reductase; Provisional.	0
NZ_CP007744.1\|WP_039293407.1\|3953308_3954604_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP007744.1\|WP_039296628.1\|3942144_3942891_+\|SDR-family-oxidoreductase	gnl\|CDD\|182051	PRK09730, PRK09730, SDR family oxidoreductase.	1.53666e-128
NZ_CP007744.1\|WP_039293393.1\|3946287_3947178_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.6953e-34
NZ_CP007744.1\|WP_039293414.1\|3956566_3957379_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.74682e-161
NZ_CP007744.1\|WP_011095070.1\|3954702_3956340_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP007744.1\|WP_011095075.1\|3964351_3965497_-\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
NZ_CP007744.1\|WP_039293391.1\|3944426_3945986_-\|MFS-transporter	gnl\|CDD\|340890	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily. This family is composed of Salmonella enterica Na+/melibiose symporter MelB, Major Facilitator Superfamily domain-containing proteins, MFSD2 and MFSD12, and other sugar transporters. MelB catalyzes the electrogenic symport of galactosides with Na+, Li+ or H+. The MFSD2 subfamily is composed of two vertebrate members, MFSD2A and MFSD2B. MFSD2A is more commonly called sodium-dependent lysophosphatidylcholine symporter 1 (NLS1). It is an LPC symporter that plays an essential role for blood-brain barrier formation and function. Inactivating mutations in MFSD2A cause a lethal microcephaly syndrome. MFSD2B is a potential risk or protect factor in the prognosis of lung adenocarcinoma. MelB-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.14234e-99
NZ_CP007744.1\|WP_080708296.1\|3941146_3942136_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293806	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain. Pseudomonas pseudoalcaligenes OPHC2 is a thermostable organophosphorus hydrolase which a broad substrate activity spectrum: it hydrolyzes various phosphotriesters, esters, and a lactone. This subgroup also includes Pseudomonas oleovorans PoOPH which exhibits high lactonase and esterase activities, and latent PTE activity. However, double mutations His250Ile/Ile263Trp switch PoOPH into an efficient and thermostable PTE. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	4.51192e-117
NZ_CP007744.1\|WP_039293404.1\|3949580_3950657_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	1.18012e-89
NZ_CP007744.1\|WP_039295227.1\|3948812_3949490_+\|type-1-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|153235	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.	5.24491e-102
NZ_CP007744.1\|WP_039293401.1\|3947346_3948765_+\|coniferyl-aldehyde-dehydrogenase	gnl\|CDD\|143451	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.	0
NZ_CP007744.1\|WP_039293390.1\|3943243_3944383_-\|glycoside-hydrolase-family-88-protein	gnl\|CDD\|226678	COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only].	3.16951e-128
NZ_CP007744.1\|WP_039293405.1\|3950662_3952855_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	8.84758e-67
NZ_CP007744.1\|WP_039293388.1\|3940115_3941048_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176153	cd08464, PBP2_DntR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.05995e-83
NZ_CP007744.1\|WP_011095077.1\|3966648_3967419_-\|2-dehydro-3-deoxyglucarate-aldolase	gnl\|CDD\|182547	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional.	0
NZ_CP007744.1\|WP_011095072.1\|3957703_3959941_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0

>NZ_CP007744.1|WP_039293405.1|3950662_3952855_-|TonB-dependent-siderophore-receptor
MKARKNNRKKAQWLLPVLMVVVPPVLSAEPATINNSEKAKAADVMVVKADRSEVNVNLAGAGMTTDEVEIGPLGKRARLDTPYSTTTVTEAMIANQQAKNVNDLLKYSASSQMQARGGIDVGRPQSRGMQGDVLANSRLDGLNIISTTAFPVEMLERLDVINSLTGALYGPASPAGQFNFTQKRPTAQTLNRFTVGYSGKGAAVGYADLGGHAGDENQFGYRINLLHDEGEGSISNSTLRRQLASVAFDWNLSPDTVLEVNASEYRFRKMGYAGGFSYGPTIQLPSAPDVTKQGYGQSFAGLDLVTKTTSTRLKHYFNNNWYASGGVGYQTADRGMRSLSNAITNNQGTVSTSLTQPYSAGRFKVLSNTLQLNGHIDTNGPSHDVVFSTTGYQWTIYNGLGNSRRFPLGNSTIDSPRHYTDPSDGRFYLGSGRYKSSRTSQQAITAGDTITFNDRWSAMGVVSQSWITSRSFGSDGGVTRDTGTSPTVSLMYKPLSNVMTYVAYADSLEQGGTAPTDDYVVNKGQTLKPYRSTQYEAGVKSQWDGLNLNAAIFRLERPFAYVAADNVFKEQGNQVNTGLELMADGEVLSGLHLYGSMTLLDPKLKDTALAATRDKRVVGVPKFQANLLTEYSHPSAPNLVYIANLHYTGKRAANDTNTSWADSYVTLDLGTRYGFKLYDKPAAFRVALNNVTNERYWASIFPGSTDGINGGANAFVGDPREIRASLTVDW
>NZ_CP007744.1|WP_039293404.1|3949580_3950657_-|ABC-transporter-substrate-binding-protein
MLKRYFAARYGELLLNALMLLAVSFSGVHLVQAETPESAPRTIHYYGDRAVTVPATVERIATSWNAQNSILAMLGYGDRIVGTTKLVRDMPLFRQFMPSITQASLVSQSGNMGINTEALIARRAQVFFVSDSVPVAEAEALNKAGIAIVPLRYNSLAAMVERTLITGEILGPEASRRAQDFAAYYQDNVRRVTEVIQNIPSQQRVKVYHAVGDPLTTSGRPSLNQDWMDLGGAINVAEPWFSRSGVTTAPVSLEQIFQADPDVIITMRAADARAIRQDAQWQQLRAVKQGRVYANPLGMFWWCRETSEQALQFLWLAKTLYPQQMQHIDMAKETHDFYQRFYGFDLTAQQVDSILSPP
>NZ_CP007744.1|WP_039295227.1|3948812_3949490_+|type-1-glutamine-amidotransferase-domain-containing-protein
MKILMVLTSHDKLGNTGNKTGFWLEEFAAPYYTFKDAGAEIVLASPAGGKPPLDPKSDLADFQTELTHRFKADPAAQQELANTVKLDTVIEQDFDAVFYPGGHGPLWDLAESPVSIALIEAFVRANKPTGFVCHAPGVLIHVKTEDGDALIKGRKVTGFTNGEEEAVQLTDVVPFLIEDEFKKLGGLYEKGPDWAPYLVEDGKLITGQNPASSEVVAKAILKQLA
>NZ_CP007744.1|WP_039293401.1|3947346_3948765_+|coniferyl-aldehyde-dehydrogenase
MSTQQSKKDLQAILKTMKRAHIASGPADAALRKDRLQRSINLLRENHAALAQAMSDDFGHRSLYHSFAADIGITLKMLQNAIDNVERWMQPEPVDEPAPGMQAWIQHQPLGVIGVISPWNFPVNLSFGPLADIFAAGNTAILKPSELTPHTSELLAELIAHYFDPLELAVVLGDAEIGQAFSELPFDHLVFTGSTAVGKHVMRAAAANLVPVTLELGGKSPVVIDSSADITEAAERTLTVKTFNAGQICLSPDYVLLPEGQEQAFRDAAKAFMQKSFPTLQANPDYTSIIADRHYDRLIRLLKEAEQQGATVVSLAPEGEASYDAKSRKIAPHLVFGVRDDMTIMQEEIFGPLLPVKTYQTAEEPINYINAHPRPLAAYLFSHDEAMQQRFAGRTTSGALVINDVMTHVSIDTLPFGGVGASGIGAYHGVHGFRRFSHAKPIVIQSEDGASNLTLRAPYHEKQNAIVAVLKG
>NZ_CP007744.1|WP_039293393.1|3946287_3947178_-|LysR-family-transcriptional-regulator
MSLLRLRTFVEVYRQRSISGAARALNLTQPAVSQHIAGLEVAVGRRLFERQANGVTPTSAADDLAADLGDKLDEAEAALASARARSMDVAGTLHIIGHADFMAEVVSEQLFPLLEAGVRVHMHTGDGDLIKQMLLEGHCDLGITAHPVTDKRLKSDLLKSATLQAVAAPAIVERLVQADDLPQALAREPMLAYDLELPLIDHWLKKNRIQDKGLVPAVVSQDLRALRRVLTSGFGWTVMPIYLCQDLLDSGELVIIPPPVGTTQLDYYLVWVPGALRQPRLAHARQTFLWRLQHAE
>NZ_CP007744.1|WP_039293391.1|3944426_3945986_-|MFS-transporter
MKTRKIGLANYLAYGSGDFLGAGTTALTAAWLLYFYTTFCGLTPIEATFIFAMARVLDAVVSPLMGFLTDNFGSTWLGKRFGRRKFFILLGIPFVFSYSFMWVGDMSYWYYLLTYLLFDIVYTMVLVPYETLVPEMTDDFKQKTKFSGARIALAQLSAILAAFLPGILLGYFGKDNAVSFFYSSLVFSIICALVLTLVYFFTWERPRDQMSEASLRAEKERQSLTLSQSLKRLNVELVSTLRIRIFRQHLGMYLGGYIAQDVFNAVFTYYVVFVLMQSPTMASNLMGTMAILQFIAVIGMIPLCIRFGPAPSYRFVVCLFGLSALSYAVLWYSGLHDTFSLLLLISALAGIGRGGINYVPWNTYTYIADVDEVITAQRREGIFAGIMTLTRKASQAGAVMLVGIVLQLSGFVSGQSVQAPSVSHTILMILSFGTVCVLALGFLVSLRFKLNLQTHSVLREETLKMREAGRPVPEKITPQARATVEMLAGMPYESLWGNNNIGYLNRHNGDKPVTHATQP
>NZ_CP007744.1|WP_039293390.1|3943243_3944383_-|glycoside-hydrolase-family-88-protein
MTVFSVKHSPLLRQPERFISREDLKALICRITDNLVNIEDKTGEFLLRLDDGRVIDTKGWAGWEWTHGIGLYGIYQYYQQTGDEQMRAIIDDWFTERLAEGTPTKNVNTVCPFLTLAYRYEETGDARWLPYLERWAEWVMYEMPRTDKQGLQHIVYNNENHQQLWDDTLMMSVLPLAKIGKLLNRPEFVEEATYQFMLHVQYLMDRESGLWFHGWTFEGQHNYAKARWARGNSWLTIVIPEFIELLDLPEHNATRRFLLQVLESQIEALAKYQDDSGLWHTLIDDPNSYLESSATAGFAYGILKAVRKRYVDPSYAEVAEKAIRGVINHVNKDGELTQVSFGTAMGTDLDFYRNIALTSMPYGQAMAILCLAEYLRVYL
>NZ_CP007744.1|WP_039296628.1|3942144_3942891_+|SDR-family-oxidoreductase
MEFITLITGGSRGIGRATARYLAGKGHKICIGYRTQQDSANSVLEEIRASGGTAIAVQVDIADEEQVIELFKQTDKMLGRLTGLVNNAAILKPQATIEQLDATRLNDIFATNTVGSFLCAREAVKRMAFRHGGKGGAIVNVSSAAARLGSPHEYIDYAASKGALDTLTIGLSLEVADQGIRVNAVRPGFIYTDMHADGGEPARVDRVKHSLPMKRGGHPMEVAQAIGWLLSDEASYVTGNFIDLAGGK
>NZ_CP007744.1|WP_080708296.1|3941146_3942136_+|MBL-fold-metallo-hydrolase
MKMNLLKQTLLPVVLLAGTPLIAEAESVPQLRTQAPGYYRMMLGQFEITALSDGTVTIPLDKLLTHIPHEDILHLLAQKNLQPQVETSINAYLINTGKRLILVDTGAGPLFGKQGGKLPDNLRAAGYPPEKIDTVLLTHIHADHSGGVSRDGKLVFPNATVYVNQKDVDFWLNPSNSNHVRDSEKHTFGQSEDSLQPVVAAKRLKTFSGKQPLFPGITAVPAPGHTPGHSLYQIESDGQKLTLWGDTIHAEAVQFPRPMTTIDFDRNMDEAADARLQVLAEAAQNNEWIGAAHISFPGLGQVKAVYDSSGKPNGYRWIPANYSMAGLKN
>NZ_CP007744.1|WP_039293388.1|3940115_3941048_-|LysR-family-transcriptional-regulator
MENDFRGVDLNLLVTFLVLYREKSVSAAADKLHLGQPAVSGALARLRTLFDDPLFIRTGQVMRPTARADYLATQLSPTFEQLQSVLGDPERFDPRTDSRVITLGMTDWVEIWLMPLLLKRLNATAPNLRINLVATDPFLDVDRLENDSVDLVISVASSQANWLKQRALLSSGFRVLWHPQQLTLPYPLPLALYSQQRHLLVTYRERARGVVDDMLEKQEMTRTIHYTTPHFSALLGILQQTPSVATVPEKLATLWCQHYGLVDSPVPLDLPRYTLSALWHARQDSNPAIKWLYEQIAEVVEEQEANSPPA
>NZ_CP007744.1|WP_039293407.1|3953308_3954604_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQAVLGKDAKDQANIDKIMIDLDGTENKSQFGANAILAVSLAAAKAAAASKGLPLYAHIAELNGTPGKYSMPLPMMNIINGGEHADNNVDIQEFMIQPVGAKTLKEAVRMGSEVFHTLAKVLKSKGMGTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKSFTSEEFTHFLEDLTKQYPIVSIEDGLDESDWAGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIDKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGDSAPFNGLKEVKGQ
>NZ_CP007744.1|WP_011095070.1|3954702_3956340_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPTQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATIQVIPHITNAIKERIIEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVQVGREHTLFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDVLICRSDRTVPANERAKIALFCNVPEKAVISLKDIDSIYKIPALLKSQGLDDYICKRFSLNCPEANLSEWEQVVYEEANPGGEVTIGMVGKYVALPDAYKSVIEALKHGGLKNRLTVNIKLIDSQDVETRGVEVLKDLDAILIPGGFGYRGVEGKIMSANYARENNIPYLGICLGMQVALMEFARNVAGMEGANSTEFVPDCKYPVVALITEWRDENGDVEVRDEASDLGGTMRVGGQQCHLTEGSLVRQMYGEQTIIERHRHRYEVNNMLLKQIEAAGLRVAGLSADRKLVEIVELPDHPWFVACQFHPEFTSTPRDGHPLFAGFVKAAGAYQKRQVK
>NZ_CP007744.1|WP_039293414.1|3956566_3957379_-|nucleoside-triphosphate-pyrophosphohydrolase
MTVSLTNLSSVERLLAIMKTLRDPENGCPWDKKQTFDTIAPYTLEETYEVLDAISRQDFDDLRGELGDLLFQVVFYAQMAQEKGLFDFSDVCNAISDKLERRHPHIFGELTLTDSDAVLANWEQTKAQERAEKDRHSPLDDIPDALPALMKAQKIQQRCSSVGFDWDSLGPVLDKVYEEIDEVMFEARQAVVDEEKLGEEIGDLLFATVNLSRHLGHKAESALQAANRKFTRRFREVEQIVTASGKTLEQATLDEMEAAWQQVKKQEISH
>NZ_CP007744.1|WP_155242711.1|3957460_3957628_-|hypothetical-protein
MPRKSLPRRERVSDGPPEDCISEGTAKRRNSRAKDWGHGAASIGRPVSGATQLRK
>NZ_CP007744.1|WP_011095072.1|3957703_3959941_-|GTP-diphosphokinase
MVAVRSAHLNTEGEFVPDAWIASLGIASQQSCERLAETWRYCEQQTQNQPDASLLLWRGIEMVEILSTLSMDNDSMRAALLFPLADANVVDEATLEAAFGKNIVDLVHGVRDMDAIRQLKATQNDSDASEQVDNIRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEEERVLAAKECTNIYAPLANRLGIGQLKWELEDFCFRYLHPDEYKKIAKLLHERRIDRAQYIDDFVKTLRDAMKEEGVQAEIYGRPKHIYSIWRKMQKKALSFDELFDVRAVRIVVERLQDCYGALGIVHTHYRHMPDEFDDYVANPKPNGYQSIHTVVLGPSGKTLEIQIRTRQMHEDAELGVAAHWKYKEGTAVGGRSGYEGRIAWLRKLLAWQEEVSDSNDVLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDIGHRCIGAKIGGRIVPFTYQLHMGDQIEIITQKQPNPSRDWLNPNLGYITTSRGRSKIQNWFRKQDRDKNILAGRQILDDELAHLGVSLKAAEKLLLPRYNVNSLDELLAAIGGGDVRLNQMVNFLQSQLKQPSAEELDREALRQLTQKTHQPPARSNNKDNGRVVVEGVGNLMHHIARCCQPIPGDEITGFITRGRGISIHRADCEQLDELRASSPERIVDAVWGESYSSGYSLVVRVIANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMDIEIYNLQVLGRVLAKLNQLPDVIDARRQQGA
>NZ_CP007744.1|WP_039293416.1|3959991_3961344_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSPNRRVTTRKAVPAKNLTVTVASLDPFGQGVARHEGKTVFVTGVLPGEQAEVQLTEEKRQFSHAKLKRLLTPSPQRVEPPCPHFTRCGGCQQQHADITLQQSSKTAALMRMMTRETGIELSAASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNSHDLVDIKACPVLRPELEALLQPLRDCLSQLSAVKRLGHVELVQAENGPLLVLRHLDPLHPADEQALRDFAQRQGVSVYLAPDAESLTCLHGEEPVYHVAGLTLAFSPRDFIQVNDAVNQQMVAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWAAQGFDKILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLDMFPHTGHLESMALFLHDTGTRKAQ
>NZ_CP007744.1|WP_011095074.1|3961459_3964261_+|two-component-sensor-histidine-kinase-BarA
MTKYSLRARMLILILAPTLMIGLLLSSFFVIHRYNQLQAQLADSGTSIIEPLATISAYAITHRQMDTIPALINTLHRRHSAIIRTISVFDARNQLLATTNVRNSVTLQPISSDALSYNRLHLHHTNDALILHMPIVNDSEFMPGGATPVLPGTATPLGYLVIELDTSTIRLQQYQEIFIAALLLLLSLGAAVLFAYRLMRDVTTPIRNMVDTVDRIRRGQLDSRVEGYMLGELDMLKNGINSMAMSLTAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNTTQTDYLLTIERSANNLLNIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQFVGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLEVQIRDTGIGIAELQQSQLFQAFRQADTSISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPLNPHAMPTEPAYTMLQGKHLAYVEYHPIAAQATLDILSQTPLMVSYSPTFEQLPEGDFDILLLGIPVQYRNMLLDYTPRLRDICRRAPCVILALPSLAQMDAEQLKTFGVHACLSKPLAASRLLPLLQDSTLFQLSFLPDATTSHQSVVRHPARLPLSVMAVDDNPANLKLIGTLLEEQVDTIILCESGTDAISQAKMHQIDIILMDIQMPGMDGICASELIRQIPHHATTPIIAVTAQTMTGEREHLLRSGMDDYLAKPIDEQMLKSVLTRHARKDPLKRDRGNIAGLLNEHDDSQLSLDWALAQQQAANKPELARDLLQMLLDFLPEVRQKIENVLNGQTDDNIIELVHKLHGSCSYSGVPRLKRICRYLEQQLRNGVHASDLEPEWLELLDEIDNVNKAAQPHIKPLHSSL
>NZ_CP007744.1|WP_011095075.1|3964351_3965497_-|glycerate-kinase
MKIVIAPDSYKESLSAQEVATQIEKGFREIFPDACYVKLPVADGGEGTVEAMVAATDGKIVNVKVTGPLGDNIDAFFGLSGDEKTAFIEMAAASGLERVPSQLRNPLKTTSYGTGELIRCALDHGVQHCIIGIGGSATNDGGSGMVQALGAKLLDKQGEQIGFGGGELDKLASIDISELDERIKSCRFEVACDVTNPLTGKLGASAIFGPQKGATAEMIEQLDNALKHYAAVIRHDLDMDVEHVPGSGAAGGMGAALQAFCGAELRQGIEIVTEALGLDELVRDATLVITGEGRIDSQTIHGKVPIGVARVAKQYNKPVIGIAGSLTADVAVVHEHGLDAVFSVLYNICSLEEALDNAAENVRMTARNIAATIRLAQSISR
>NZ_CP007744.1|WP_011095076.1|3965673_3966558_-|2-hydroxy-3-oxopropionate-reductase
MKIGFIGLGIMGKPMSKNLLKAGYSLVVMDRNLEAVAEVVAAGATSAETPKQVAEQSDVIITMLPNSPHVKEVVLGENGVIEGARAGSIVVDMSSIAPLASREIAAVLAEKEIAMLDAPVSGGEPKAVDGTLSVMVGGDKAQFERCFEILKSMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALKADDLGSADHSALACYYEKLAKVEVTR
>NZ_CP007744.1|WP_011095077.1|3966648_3967419_-|2-dehydro-3-deoxyglucarate-aldolase
MKTPLLPNRFRQDLQQGKTLIGCWCALGNPISTEVLGLAGFDWLVLDGEHAPNDIVTFIPQLMALKGSHSAPVVRPPCNEPIIIKRLLDIGFNNFLIPFVETAEEAARAVASTRYPPAGIRGVSVAHRSNSYGTEPDYFAKINDNITVVVQIESQDGLDNLDAIIAVDGVDGVFVGPSDLSAALGYLGQPNHPDVQKAIRHIFDRAAAHNKPCGILAPVEADARRYLEWGASFVAVGSDLGVFRSATQALSDKYKK

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Crispr_ID: NZ_CP007744_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007744_7

4078168-4078917

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
NNTTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder

12 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP007744_7

>merge|NZ_CP007744|7|4078168-4078917|CRISPRCasFinder,CRT,PILER-CR,CRISPRCasFinder
TGAATAGGCTGCCTGTACGGCAGTGAACGTGAGGCTTCCTTTTTATGCACCTTCTGTCTGTTTTCTAAGCTGCCTGTGCGGCAGTGAACCGTCCGCCTCGGGGTTGCTCTGTACTACGCTTTTTCTAAGCTGCCTGTGCGGCAGTGAACATGATGCACGTTGTGCTTACTCCAATCAGCAATTTCTAAGCTGCCTGTGGCAGTGAACAATGGAACATGGCGACTCCTTACGGTTTCTCTTTTCTAAGCTGCCTGTACGGCAGTGAACACGCTATCCACTATGAACGACATTAGAAGTTTTTTCTAAGCTGCCTGTACGGCAGTGAACTTATTTAATTAGTTTTGCGGCGTACTCAATAATTTCTAAGCTGCCTGTACGGCAGTGAACAACTGAATAAACTCGACTCAACGCAAGATGCATTTCTAAGCTGCCTGTACGGCAGTGAACTAGTTGACGCGCAGATAACGCAGAACACCCTGCTTTCTAAGCTGCCTGTACGGCAGTGAACTAAGGCCATGTATGCGTGGTCTTTGGCTTATCATTTCTAAGCTGCCTGTACGGCAGTGAACAAATCAGCCAGCAACTCATCAGGGTTTACCTCTTTCTAAGCTGCCTGTACGGCAGTGAACAAGTACCTTCCAGTATCGATCGAGCTTCAACATTTCTAAGCTGCCTGTACGGCAGTGAACTTATGACCTTGCGGACGTGCAGCGATCATTTCATTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP007744|7|7|4078168-4078317|CRISPRCasFinder
TGAATAGGCTGCCTGTACGGCAGTGAAC	GTGAGGCTTCCTTTTTATGCACCTTCTGTCTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGTCCGCCTCGGGGTTGCTCTGTACTACGCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAACATGATGCACGTTGTGCTTACTCCAATCAGCAATTTCTAAGCTGCCTGTGGCAGTGAACAATGGAACATGGCGACTCCTTACGGTTTCTCTTTTCTAAGCTGCCTGTACGGCAGTGAAC	ACGCTATCCACTATGAACGACATTAGAAGTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTATTTAATTAGTTTTGCGGCGTACTCAATAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AACTGAATAAACTCGACTCAACGCAAGATGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAGTTGACGCGCAGATAACGCAGAACACCCTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAAGGCCATGTATGCGTGGTCTTTGGCTTATCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAATCAGCCAGCAACTCATCAGGGTTTACCTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGTACCTTCCAGTATCGATCGAGCTTCAACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTATGACCTTGCGGACGTGCAGCGATCATTTCA


>NZ_CP007744|7|1|4078168-4078917|CRT
TGAATAGGCTGCCTGTACGGCAGTGAAC	GTGAGGCTTCCTTTTTATGCACCTTCTGTCTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGTCCGCCTCGGGGTTGCTCTGTACTACGCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATGATGCACGTTGTGCTTACTCCAATCAGC
AATTTCTAAGCTGCCTGTGGCAGTGAAC	AATGGAACATGGCGACTCCTTACGGTTTCTCT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACGCTATCCACTATGAACGACATTAGAAGTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTATTTAATTAGTTTTGCGGCGTACTCAATAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AACTGAATAAACTCGACTCAACGCAAGATGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAGTTGACGCGCAGATAACGCAGAACACCCTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAAGGCCATGTATGCGTGGTCTTTGGCTTATCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAATCAGCCAGCAACTCATCAGGGTTTACCTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGTACCTTCCAGTATCGATCGAGCTTCAACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTATGACCTTGCGGACGTGCAGCGATCATTTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP007744|7|1|4078407-4078917|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACGCTATCCACTATGAACGACATTAGAAGTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTATTTAATTAGTTTTGCGGCGTACTCAATAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AACTGAATAAACTCGACTCAACGCAAGATGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAGTTGACGCGCAGATAACGCAGAACACCCTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAAGGCCATGTATGCGTGGTCTTTGGCTTATCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAATCAGCCAGCAACTCATCAGGGTTTACCTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGTACCTTCCAGTATCGATCGAGCTTCAACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTATGACCTTGCGGACGTGCAGCGATCATTTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP007744|7|8|4078407-4078917|CRISPRCasFinder
	GTGAGGCTTCCTTTTTATGCACCTTCTGTCTGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CGTCCGCCTCGGGGTTGCTCTGTACTACGCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAACATGATGCACGTTGTGCTTACTCCAATCAGCAATTTCTAAGCTGCCTGTGGCAGTGAACAATGGAACATGGCGACTCCTTACGGTTTCTCTTTTCTAAGCTGCCTGTACGGCAGTGAAC	ACGCTATCCACTATGAACGACATTAGAAGTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTATTTAATTAGTTTTGCGGCGTACTCAATAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AACTGAATAAACTCGACTCAACGCAAGATGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAGTTGACGCGCAGATAACGCAGAACACCCTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TAAGGCCATGTATGCGTGGTCTTTGGCTTATCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAATCAGCCAGCAACTCATCAGGGTTTACCTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGTACCTTCCAGTATCGATCGAGCTTCAACA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTATGACCTTGCGGACGTGCAGCGATCATTTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007744.1\|WP_011095171.1\|4073714_4074212_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NZ_CP007744.1\|WP_011095186.1\|4088088_4088505_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NZ_CP007744.1\|WP_039293545.1\|4090063_4092898_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP007744.1\|WP_039293529.1\|4075765_4076170_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP007744.1\|WP_039293535.1\|4080189_4083486_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP007744.1\|WP_039293532.1\|4076221_4076629_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP007744.1\|WP_011095183.1\|4086125_4087139_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP007744.1\|WP_071598488.1\|4074860_4075268_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP007744.1\|WP_039293538.1\|4083851_4085183_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
NZ_CP007744.1\|WP_039293542.1\|4087148_4087703_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP007744.1\|WP_071598487.1\|4076660_4077065_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP007744.1\|WP_039295246.1\|4079212_4080193_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP007744.1\|WP_039293524.1\|4071658_4072273_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP007744.1\|WP_011095172.1\|4074332_4074812_+\|Hcp-family-type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
NZ_CP007744.1\|WP_011095188.1\|4089626_4090046_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
NZ_CP007744.1\|WP_011095182.1\|4085179_4086112_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NZ_CP007744.1\|WP_080641334.1\|4077057_4077915_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007744.1\|WP_011095187.1\|4088501_4088729_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
NZ_CP007744.1\|WP_039293526.1\|4072336_4073530_+\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_CP007744.1\|WP_011095168.1\|4070932_4071403_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439

Protein	Function_ID	Function_description	E-value
NZ_CP007744.1\|WP_011095171.1\|4073714_4074212_+\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	3.08234e-29
NZ_CP007744.1\|WP_011095186.1\|4088088_4088505_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	5.24573e-43
NZ_CP007744.1\|WP_039293545.1\|4090063_4092898_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP007744.1\|WP_039293529.1\|4075765_4076170_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	7.76994e-43
NZ_CP007744.1\|WP_039293542.1\|4087148_4087703_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	9.21455e-99
NZ_CP007744.1\|WP_039293532.1\|4076221_4076629_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	5.57298e-41
NZ_CP007744.1\|WP_011095183.1\|4086125_4087139_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP007744.1\|WP_039293535.1\|4080189_4083486_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP007744.1\|WP_039293538.1\|4083851_4085183_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	0
NZ_CP007744.1\|WP_071598487.1\|4076660_4077065_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	2.06455e-28
NZ_CP007744.1\|WP_039295246.1\|4079212_4080193_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP007744.1\|WP_039293524.1\|4071658_4072273_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	3.38964e-39
NZ_CP007744.1\|WP_011095172.1\|4074332_4074812_+\|Hcp-family-type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	3.64329e-80
NZ_CP007744.1\|WP_011095188.1\|4089626_4090046_-\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	2.21723e-62
NZ_CP007744.1\|WP_011095182.1\|4085179_4086112_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	5.90315e-155
NZ_CP007744.1\|WP_071598488.1\|4074860_4075268_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	2.12088e-32
NZ_CP007744.1\|WP_011095187.1\|4088501_4088729_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	1.08552e-09
NZ_CP007744.1\|WP_039293526.1\|4072336_4073530_+\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_CP007744.1\|WP_011095168.1\|4070932_4071403_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.48524e-34

>NZ_CP007744.1|WP_080641334.1|4077057_4077915_-|hypothetical-protein
MKYDPVLKTLVDDDYRLEDHLDFKKQHADINYQKLHAQLNEINNDNIHAILTAQEATYFLQTLCTPNPNQSWKTAMFGCTDPLSSFAGNIAEAVSVSRIVIEIKGFGVTATEYVGKNGSKYIKLSGYPGVRKYLDATRYLVGNQKILDMGIGTKGIESGIATGARFCIIFSAAYRAVELMLKDEYALTDFFVNLTMDAAKLAVSIGAAWGAKTLATTAMVTGGSVVLIACGIFLVGFAVGFSLFWLDNEYKISETIIKNLKSHKKQYTPYHPDQFFQAWGRYSRG
>NZ_CP007744.1|WP_071598487.1|4076660_4077065_-|DUF1240-domain-containing-protein
MVKINRPFFFIYSVFLFFLSCFISWFSLSGYVDFFQSSDTVIFSWKLGLMVFGSPIIFYFSYFGFLSAIKNRPIKTNSKLSNLLVAIFIFGAIISFISSVYISYSLNEQGYATCPKKSWIDPNKYVKNIAICKE
>NZ_CP007744.1|WP_039293532.1|4076221_4076629_-|DUF1240-domain-containing-protein
MVKVNRPLAGAFAVFIFLLTCFTGWFSFNSYLDILQLNDTIVFSWRVGLMVFGSPLLFYFSYLFFYSAINNEVAKINNKFGGGLFIVMIAGAIISLLSSFYISYNFRAYGYELCPKVSWMDPNKYVKNIALCDEW
>NZ_CP007744.1|WP_039293529.1|4075765_4076170_-|DUF1240-domain-containing-protein
MVKINRPLFGAFATLVFLMSCWGGWFSLSGYLAFVKLSNVIIFSWKVGVLVFAVPLLFYFSYLAFHSAMKNEMARMNNKLANVLAVIAIFGAVVSFFSSMYISYSLDDRGYLVCQKISWMDPNKYVKDISLCKD
>NZ_CP007744.1|WP_071598488.1|4074860_4075268_-|DUF1240-domain-containing-protein
MAKVNRPLIGAFSVFLLCLSCWGTWFSLSAYLSFFKLNDVIIFSWRVGFAIFGVPLSFYFSYVCFFSAIKNKHIKINNKLGEWLIKILIFGAVVSFFSSSYISYNLNFHDYKICPKISWIAPNKYVKDIALCDEW
>NZ_CP007744.1|WP_011095172.1|4074332_4074812_+|Hcp-family-type-VI-secretion-system-effector
MANLIYASINGQKQGLISSGCSTLDSIGNRYQAGHEDQIQVLGLNHSISRDQNVSHHPINFIKPIDKSSPLLGMAISYNEKVDVTFYFYRVNSAGQLELYYEVALTDASIVDVTCVYPHVIDNNDIMPYEKVQLKYKTIAWNHKIAGTSGYSIWEEMSL
>NZ_CP007744.1|WP_011095171.1|4073714_4074212_+|M48-family-metallopeptidase
MTQLRYLNGYPPTIVAQAQTLVDQGKLGLWLEKRYPDRHQIQSDKSLYQFVAELKQRYLKNAPAISKVLYDNKQNPIKGTLGTNTFVARVQGGKLKSNNEIRIATLFRDGPEDFLRMIVVHELAHLKEKDHNKAFYQLCCHMDPDYHQLEFDMRIWLNWREINAG
>NZ_CP007744.1|WP_039293526.1|4072336_4073530_+|aspartate/tyrosine/aromatic-aminotransferase
MFQNVDTYAGDPILSLMEKFKQDPRADKINLSIGLYYNEQNIIPQLRSVSAAESSLRQPAQSANSYLPMEGLQPYRTAIQHLLFGESHAALEAGRIATIQTLGGSGALKVGADFLKRYFPASEVWVSDPTWENHIAIFEGAGFKVHTYPYFDGESLGVKFDAMLATLQTLPARSIVLLHPCCHNPTGSDLTTEQWDRVIEVIIQRELIPFMDIAYQGFGLGIEQDAYAIRAVASAGVPALIANSFSKIFSLYSERVGGLSVVCDDADSAQRVLGQLKATVRRNYSSPPNFGAQVVSKVLNDVQLNADWKAEVEEMRTRILSMRQELVSALKNALPNRNVDYLLTQRGMFSYTGFSPEQVDRLREEFGVYLIASGRMCMAGLNHSNVQRVAAAFAAIQ
>NZ_CP007744.1|WP_039293524.1|4071658_4072273_+|YitT-family-protein
MDNVIPTQKISHTLLEDVLAILIGTLMVSFGIILLRQAGALTGGTAGIAFLVHYLTNVSFGVAFFLLNLPFYYLAVRRMGWEFTVKTFSAVGLVSLFSDLHPLFIHFDQLNPFYATLFGNIITGIGFVVLFRHKASLGGVNILALYLQDKYGLRAGKLQMGVDVVIVLTSLFVVSIPMLIASILGATILNLIIAMNHRPGRYAA
>NZ_CP007744.1|WP_011095168.1|4070932_4071403_+|Lrp/AsnC-family-transcriptional-regulator
MYNIDDFDLKILTLLQTNGRLTNQELSELVGLSASQCSRRRIALEQAQLILGYHARLSPNAVGLECLGLIEVRLINHTSEYVERFHQMLGEVDAIIDAYKTTGDADYLLKVAVADLPGLSTLISQILSQNKSVAHLKTSVVLNRLKENGLITPALP
>NZ_CP007744.1|WP_039295246.1|4079212_4080193_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MDNAFSPSDLKTILHSKRANVYYLQHCRILVNGGRVEYVTEEGNQSLYWNIPIANTSVVMLGTGTSVTQAAMREFARAGVMIGFCGGGGTPLFAANEAEIAVSWLSPQSEYRPTEYLQDWVSFWFDDEKRLAAAIAFQQVRIAQIRQHWLGSRLSRESRFTFKSEHLQALLDRYQKGLTDCRTSNDVLVQEAMMTKALYRLAANAVSYGDFTRAKRGGGTDLANRFLDHGNYLAYGLAAVSTWVLGLPHGLAVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMEGEDDQEFRQRCLTAFQQSEALDVMIGSLQDVASKLSQVAR
>NZ_CP007744.1|WP_039293535.1|4080189_4083486_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISECNKRALVETRRILDQFAERKGERSWQTAITLEGLNTLRKLLRKTARRNTAVACHWVRSTNHTELLWVVGNLRRFNAQGSVPTNTTSRDVLRTKDENPWHSAEVFSLLAAIAGLFHDVGKANMLFQAGLSGTAPRSQPYRHEWVSLRLFQAFVGEQDDKAWLTTLSMITSEAETELLAGLQRDKPTFSDSPFSTLPPLAQTIAWLIVSHHRLPVFNKSTELAPNSRPPQLDYAETWLTDHLSPQWNALNHYKTDCSPYEREQNWQFPNGTPLRSAVWRDKARKFAGRALKLPSFMHFSQLEQRLTVHLARLALMLADHHYSAGAATIGWQDITYPVWANTDRKTGVYKQRLDEHCVGVGQNALLLGRSLPHLRDTLPAITRHKGFRQRSTHPRFRWQDRAFDLACSIRDASKQHGFFGVNMASTGRGKTFANARIMYGLSDESIGCRFSVALGLRTLTLQTGDALRQRLKLDEDDLAVLIGSQAVQDLHEMRQENEARQQNTPQTGSESADPLFSEHQYVRYDGSLDDGRLKAWLERSPTLHQLLSAPVLITTIDHLMPATEGLRGGHQIAPMLRLLTSDLVLDEPDDFGLEDLPALCRLVNWAGMLGSRVLLSSATLPPALIRALFDAYLDGRAAWQQAYGTPNTPLNVCCGWFDEFDCQHEQYGDVKDFMVSHDAFVHQRLKNLTKDELPLRFATIVPVSSSSKNKDDVHLSVAQAIHPRMFDLHSQHHQQHENGKTVSLGLVRMANIDPLVAVARQLIAIPSPPDTCIHYCIYHSQHPLAMRSHIEQRLDAALMRNDINALWQVEEIRQAIENSPQQHHVFVVLATSVAEVGRDHDYDWAIVEPSSMRSLIQLAGRILRHRQDKQYVPKTPNIYLLSHNIRALRGKDIAYCKPGFESQDDSLDTHDLHQLLQEKEYRHLSAAPRIVQPTSFAKPLSLVALEHAVLGKTLLGLKNQKLDDLKRPPAAFWWRAHPHWNGELQRRTPFRQSAKDEAYYLWIADDDEEPVFMVQDDGPSGWKQSDIARPVTLDMAEGVSAWIEQDYHALYQRLAEEKQWELSWVSARFGEIRLREEEDWYWHPLLGVFGALS
>NZ_CP007744.1|WP_039293538.1|4083851_4085183_+|type-I-F-CRISPR-associated-protein-Csy1
MRNGLPEFILSYINNRKQAKLDAFDKEAEKKRATLSGEALAVAELELAQARREIELKHEVRNWLTDAASRAGQISLVTHALKFTHSDAKGSSVFSAETVADAKTLSTATLEQPAIDAVGNAAALDVAKLLQTEHDGDSLVAALQRGDHSALEALAENPEQLAQWLTGFQQVFTNRQPSSHKLAKQIYFPLASGEYHLLSPLYSSSLAQALYQRINAVRFGDEAKAIRQAQRTNQWHDQLSISYPNLAVQNMGGTKPQNISALNSSRSGRSYLLSSAPPQWNSIEKPPQQHESIFRPHGEVDYHTRATLAQMQRFLLSVKDVENNRDIRQQRLRYLDQLIDQLFFYVASVQNLPVGWSAESELKRPQQLWLDPYRAETDTVFRREREAGDWRQAVAYDFGRWLNRRLKHENLIFGEVERREWSTAALFKRRMREMESALKEELA
>NZ_CP007744.1|WP_011095182.1|4085179_4086112_+|type-I-F-CRISPR-associated-protein-Csy2
MSTLIILRRIQVENANAIAGLTYGFPAITHFLGFTHALSRKLQASHGLTLEGCGVVSHQHQLHAYGSSWERSFALTRNPLTKEAKTAAFNEEGRMHMTVSLLIRCDGQIPADTTALCEHLKQQAQCQRLAGGTVIDIERVTVQSLPVDEAETRGVMRRLLPGFVLRDRTSLLHRHFQTLQQAKPQAEMIDAWLDFAALKMQAERDPSDETVQWKYLPKPGDGGFLTPLMIGYRAISPLYAPGEVDKTRDPHTPFCFAEAAYGIGEWQGAHRISDISQILWEYDYQNGDYHCRQVADTHSVAEDTSYEFDY
>NZ_CP007744.1|WP_011095183.1|4086125_4087139_+|type-I-F-CRISPR-associated-protein-Csy3
MAKAATTLKTASVLAFERKLANSDALMYAGNWAQQDNWTAIAIQEKSVRGTISNRLKNALTSDPAKLDAEIQKANLQKVDVAALPFGADTLKIVFTLRVLGNLAQPSVCNDQDYQTALGDIITGYAQEQGFSTLAARYAENIANGRFLWRNRVGAEAIRVVVTKKGERSWEFNGEDYSLRQFSQPAGDLAALTQAIEKGLAGDASALFTVEAYVQLGNGQEVFPSQELVLDEKARNGKSKILYQVNDVAAIHSQKIGNALRTIDDWYPAADEAGPIAVEPYGSVTSRGKAYRQPREKMDFYTLLDNWVIKGDVPMPEQQHYVIATLIRGGVFGEKGE
>NZ_CP007744.1|WP_039293542.1|4087148_4087703_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIDIRVQPDPEFTASQLLNALFAKLHRVLGQLANGKIGISFPEVGKTLGECLRLHGTEDALSTLEKTSWLKGLRDYTQVSECKVVPNGVKFRTVRRVQLKSSAERLRRRSVSKGWLTAAEAAARIPDAVEKRSALPFVQIKSLSNGQMFFVFVEHGPLQNAPTAGRFSSYGLSTAATVPWF
>NZ_CP007744.1|WP_011095186.1|4088088_4088505_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MSRLFMLDTNICSFIMREHPSAVIEKLQQCTLRRDRIVVSAITYAEMRFGAVGKKASPRHMLLVDAFCRRLDAILPWDSAAVDATTKIKIALAAAVTPIGPNDTAIAGHAISAKAILVTNNLREFERVPELILEDWVK
>NZ_CP007744.1|WP_011095187.1|4088501_4088729_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MRIVSVFKNGNNRAIRLPRDMDFEGVNELEIVREGDTIMLRPVKPNWHSFLQEERADADFMTERQDVVEEGRFEL
>NZ_CP007744.1|WP_011095188.1|4089626_4090046_-|YjbQ-family-protein
MWTQYEIRLKPKARGFHLVTDEILAQVVALRQIKVGLMHVFIKHTSAALTINENADPTVRQDFESFFNRLVPEDEPYYRHTYEGSDDMPAHLKGSLLGNSLTIPITNGRLNIGTWQGIYLCEHRNHGGSRSLVVTLNGE
>NZ_CP007744.1|WP_039293545.1|4090063_4092898_-|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLIIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDHDVPLDAQTVSQMVDNVLAQPEGKRLMLLAPIVKDRKGEHSKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALDLSGGSVVVADMDDPTQPELLFSANFACPVCGYSMHELEPRMFSFNNPAGACPSCDGLGVQQFFDPARVVQNSELSLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDIDAPFEGLNAEVQKVILYGSGKENVEFKYINDRGDTSVRRHPFEGVLHNMERRYKETESTAVREELAKFISNRSCASCGGTRLREEARNVFVEQTTLPQISDMSIGHAMTFFKNMKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLVHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQIVAEGTMDEIMAVPGSLTGQFLSGKRKIEIPKQRVPADPTKVLKLIGAKGNNLKDVTLTLPVGLFTCVTGVSGSGKSTLINDTLFPLAQRQLNGATLAEPAAYREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPESRTRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKSKRYNRETLEIKYKGKGIHEVLDMTIEEAREFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIEQLLTVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEESHTARFLRPILAREA

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Crispr_ID: NZ_CP007744_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007744_8

4087833-4088041

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder

3 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NZ_CP007744_8

>merge|NZ_CP007744|8|4087833-4088041|CRISPRCasFinder
GTTCACTGCCGTGTAGGTAGCTTAGAAATTTCAGTTCAAACAGGCCTTGCCAGCAGTTGAGTTCACTGCCGTGTAGGTAGCTTAGAAATGATTGAAGTCGGCTTTCTGAGGCGTAATGTTGTTCACTGCCGTATAGGCAGCTTAGAAACATGCACCTTGGTTCAGATCAGCTTTTTGCGTATTCACTGCCGCACAGGCAGTTTAACAAG

>NZ_CP007744|8|9|4087833-4088041|CRISPRCasFinder
GTTCACTGCCGTGTAGGTAGCTTAGAAA	TTTCAGTTCAAACAGGCCTTGCCAGCAGTTGA
GTTCACTGCCGTGTAGGTAGCTTAGAAA	TGATTGAAGTCGGCTTTCTGAGGCGTAATGTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CATGCACCTTGGTTCAGATCAGCTTTTTGCGT
ATTCACTGCCGCACAGGCAGTTTAACAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007744.1\|WP_039295248.1\|4096000_4096459_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP007744.1\|WP_011095193.1\|4097237_4097669_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_CP007744.1\|WP_011095187.1\|4088501_4088729_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
NZ_CP007744.1\|WP_039293548.1\|4093952_4095809_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490
NZ_CP007744.1\|WP_039293529.1\|4075765_4076170_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP007744.1\|WP_039293542.1\|4087148_4087703_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP007744.1\|WP_039293554.1\|4097809_4098241_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP007744.1\|WP_011095186.1\|4088088_4088505_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NZ_CP007744.1\|WP_039293545.1\|4090063_4092898_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP007744.1\|WP_039293535.1\|4080189_4083486_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP007744.1\|WP_039293538.1\|4083851_4085183_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
NZ_CP007744.1\|WP_071598487.1\|4076660_4077065_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP007744.1\|WP_039295246.1\|4079212_4080193_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP007744.1\|WP_011095183.1\|4086125_4087139_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP007744.1\|WP_039293551.1\|4096526_4097117_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007744.1\|WP_011095188.1\|4089626_4090046_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
NZ_CP007744.1\|WP_011095182.1\|4085179_4086112_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NZ_CP007744.1\|WP_080641334.1\|4077057_4077915_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007744.1\|WP_011095190.1\|4093143_4093707_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236362
NZ_CP007744.1\|WP_039293532.1\|4076221_4076629_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520

Protein	Function_ID	Function_description	E-value
NZ_CP007744.1\|WP_011095193.1\|4097237_4097669_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	1.49874e-28
NZ_CP007744.1\|WP_011095187.1\|4088501_4088729_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	1.08552e-09
NZ_CP007744.1\|WP_039293548.1\|4093952_4095809_+\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	4.05038e-140
NZ_CP007744.1\|WP_039293529.1\|4075765_4076170_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	7.76994e-43
NZ_CP007744.1\|WP_039293542.1\|4087148_4087703_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	9.21455e-99
NZ_CP007744.1\|WP_039293554.1\|4097809_4098241_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.10938e-10
NZ_CP007744.1\|WP_011095186.1\|4088088_4088505_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	5.24573e-43
NZ_CP007744.1\|WP_039293545.1\|4090063_4092898_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP007744.1\|WP_039293535.1\|4080189_4083486_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP007744.1\|WP_039293538.1\|4083851_4085183_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	0
NZ_CP007744.1\|WP_071598487.1\|4076660_4077065_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	2.06455e-28
NZ_CP007744.1\|WP_039295246.1\|4079212_4080193_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP007744.1\|WP_011095183.1\|4086125_4087139_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP007744.1\|WP_011095188.1\|4089626_4090046_-\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	2.21723e-62
NZ_CP007744.1\|WP_011095182.1\|4085179_4086112_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	5.90315e-155
NZ_CP007744.1\|WP_039295248.1\|4096000_4096459_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.63809e-16
NZ_CP007744.1\|WP_011095190.1\|4093143_4093707_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	4.63274e-107
NZ_CP007744.1\|WP_039293532.1\|4076221_4076629_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	5.57298e-41

>NZ_CP007744.1|WP_039293542.1|4087148_4087703_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIDIRVQPDPEFTASQLLNALFAKLHRVLGQLANGKIGISFPEVGKTLGECLRLHGTEDALSTLEKTSWLKGLRDYTQVSECKVVPNGVKFRTVRRVQLKSSAERLRRRSVSKGWLTAAEAAARIPDAVEKRSALPFVQIKSLSNGQMFFVFVEHGPLQNAPTAGRFSSYGLSTAATVPWF
>NZ_CP007744.1|WP_011095183.1|4086125_4087139_+|type-I-F-CRISPR-associated-protein-Csy3
MAKAATTLKTASVLAFERKLANSDALMYAGNWAQQDNWTAIAIQEKSVRGTISNRLKNALTSDPAKLDAEIQKANLQKVDVAALPFGADTLKIVFTLRVLGNLAQPSVCNDQDYQTALGDIITGYAQEQGFSTLAARYAENIANGRFLWRNRVGAEAIRVVVTKKGERSWEFNGEDYSLRQFSQPAGDLAALTQAIEKGLAGDASALFTVEAYVQLGNGQEVFPSQELVLDEKARNGKSKILYQVNDVAAIHSQKIGNALRTIDDWYPAADEAGPIAVEPYGSVTSRGKAYRQPREKMDFYTLLDNWVIKGDVPMPEQQHYVIATLIRGGVFGEKGE
>NZ_CP007744.1|WP_011095182.1|4085179_4086112_+|type-I-F-CRISPR-associated-protein-Csy2
MSTLIILRRIQVENANAIAGLTYGFPAITHFLGFTHALSRKLQASHGLTLEGCGVVSHQHQLHAYGSSWERSFALTRNPLTKEAKTAAFNEEGRMHMTVSLLIRCDGQIPADTTALCEHLKQQAQCQRLAGGTVIDIERVTVQSLPVDEAETRGVMRRLLPGFVLRDRTSLLHRHFQTLQQAKPQAEMIDAWLDFAALKMQAERDPSDETVQWKYLPKPGDGGFLTPLMIGYRAISPLYAPGEVDKTRDPHTPFCFAEAAYGIGEWQGAHRISDISQILWEYDYQNGDYHCRQVADTHSVAEDTSYEFDY
>NZ_CP007744.1|WP_039293538.1|4083851_4085183_+|type-I-F-CRISPR-associated-protein-Csy1
MRNGLPEFILSYINNRKQAKLDAFDKEAEKKRATLSGEALAVAELELAQARREIELKHEVRNWLTDAASRAGQISLVTHALKFTHSDAKGSSVFSAETVADAKTLSTATLEQPAIDAVGNAAALDVAKLLQTEHDGDSLVAALQRGDHSALEALAENPEQLAQWLTGFQQVFTNRQPSSHKLAKQIYFPLASGEYHLLSPLYSSSLAQALYQRINAVRFGDEAKAIRQAQRTNQWHDQLSISYPNLAVQNMGGTKPQNISALNSSRSGRSYLLSSAPPQWNSIEKPPQQHESIFRPHGEVDYHTRATLAQMQRFLLSVKDVENNRDIRQQRLRYLDQLIDQLFFYVASVQNLPVGWSAESELKRPQQLWLDPYRAETDTVFRREREAGDWRQAVAYDFGRWLNRRLKHENLIFGEVERREWSTAALFKRRMREMESALKEELA
>NZ_CP007744.1|WP_039293535.1|4080189_4083486_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISECNKRALVETRRILDQFAERKGERSWQTAITLEGLNTLRKLLRKTARRNTAVACHWVRSTNHTELLWVVGNLRRFNAQGSVPTNTTSRDVLRTKDENPWHSAEVFSLLAAIAGLFHDVGKANMLFQAGLSGTAPRSQPYRHEWVSLRLFQAFVGEQDDKAWLTTLSMITSEAETELLAGLQRDKPTFSDSPFSTLPPLAQTIAWLIVSHHRLPVFNKSTELAPNSRPPQLDYAETWLTDHLSPQWNALNHYKTDCSPYEREQNWQFPNGTPLRSAVWRDKARKFAGRALKLPSFMHFSQLEQRLTVHLARLALMLADHHYSAGAATIGWQDITYPVWANTDRKTGVYKQRLDEHCVGVGQNALLLGRSLPHLRDTLPAITRHKGFRQRSTHPRFRWQDRAFDLACSIRDASKQHGFFGVNMASTGRGKTFANARIMYGLSDESIGCRFSVALGLRTLTLQTGDALRQRLKLDEDDLAVLIGSQAVQDLHEMRQENEARQQNTPQTGSESADPLFSEHQYVRYDGSLDDGRLKAWLERSPTLHQLLSAPVLITTIDHLMPATEGLRGGHQIAPMLRLLTSDLVLDEPDDFGLEDLPALCRLVNWAGMLGSRVLLSSATLPPALIRALFDAYLDGRAAWQQAYGTPNTPLNVCCGWFDEFDCQHEQYGDVKDFMVSHDAFVHQRLKNLTKDELPLRFATIVPVSSSSKNKDDVHLSVAQAIHPRMFDLHSQHHQQHENGKTVSLGLVRMANIDPLVAVARQLIAIPSPPDTCIHYCIYHSQHPLAMRSHIEQRLDAALMRNDINALWQVEEIRQAIENSPQQHHVFVVLATSVAEVGRDHDYDWAIVEPSSMRSLIQLAGRILRHRQDKQYVPKTPNIYLLSHNIRALRGKDIAYCKPGFESQDDSLDTHDLHQLLQEKEYRHLSAAPRIVQPTSFAKPLSLVALEHAVLGKTLLGLKNQKLDDLKRPPAAFWWRAHPHWNGELQRRTPFRQSAKDEAYYLWIADDDEEPVFMVQDDGPSGWKQSDIARPVTLDMAEGVSAWIEQDYHALYQRLAEEKQWELSWVSARFGEIRLREEEDWYWHPLLGVFGALS
>NZ_CP007744.1|WP_039295246.1|4079212_4080193_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MDNAFSPSDLKTILHSKRANVYYLQHCRILVNGGRVEYVTEEGNQSLYWNIPIANTSVVMLGTGTSVTQAAMREFARAGVMIGFCGGGGTPLFAANEAEIAVSWLSPQSEYRPTEYLQDWVSFWFDDEKRLAAAIAFQQVRIAQIRQHWLGSRLSRESRFTFKSEHLQALLDRYQKGLTDCRTSNDVLVQEAMMTKALYRLAANAVSYGDFTRAKRGGGTDLANRFLDHGNYLAYGLAAVSTWVLGLPHGLAVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMEGEDDQEFRQRCLTAFQQSEALDVMIGSLQDVASKLSQVAR
>NZ_CP007744.1|WP_080641334.1|4077057_4077915_-|hypothetical-protein
MKYDPVLKTLVDDDYRLEDHLDFKKQHADINYQKLHAQLNEINNDNIHAILTAQEATYFLQTLCTPNPNQSWKTAMFGCTDPLSSFAGNIAEAVSVSRIVIEIKGFGVTATEYVGKNGSKYIKLSGYPGVRKYLDATRYLVGNQKILDMGIGTKGIESGIATGARFCIIFSAAYRAVELMLKDEYALTDFFVNLTMDAAKLAVSIGAAWGAKTLATTAMVTGGSVVLIACGIFLVGFAVGFSLFWLDNEYKISETIIKNLKSHKKQYTPYHPDQFFQAWGRYSRG
>NZ_CP007744.1|WP_071598487.1|4076660_4077065_-|DUF1240-domain-containing-protein
MVKINRPFFFIYSVFLFFLSCFISWFSLSGYVDFFQSSDTVIFSWKLGLMVFGSPIIFYFSYFGFLSAIKNRPIKTNSKLSNLLVAIFIFGAIISFISSVYISYSLNEQGYATCPKKSWIDPNKYVKNIAICKE
>NZ_CP007744.1|WP_039293532.1|4076221_4076629_-|DUF1240-domain-containing-protein
MVKVNRPLAGAFAVFIFLLTCFTGWFSFNSYLDILQLNDTIVFSWRVGLMVFGSPLLFYFSYLFFYSAINNEVAKINNKFGGGLFIVMIAGAIISLLSSFYISYNFRAYGYELCPKVSWMDPNKYVKNIALCDEW
>NZ_CP007744.1|WP_039293529.1|4075765_4076170_-|DUF1240-domain-containing-protein
MVKINRPLFGAFATLVFLMSCWGGWFSLSGYLAFVKLSNVIIFSWKVGVLVFAVPLLFYFSYLAFHSAMKNEMARMNNKLANVLAVIAIFGAVVSFFSSMYISYSLDDRGYLVCQKISWMDPNKYVKDISLCKD
>NZ_CP007744.1|WP_011095186.1|4088088_4088505_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MSRLFMLDTNICSFIMREHPSAVIEKLQQCTLRRDRIVVSAITYAEMRFGAVGKKASPRHMLLVDAFCRRLDAILPWDSAAVDATTKIKIALAAAVTPIGPNDTAIAGHAISAKAILVTNNLREFERVPELILEDWVK
>NZ_CP007744.1|WP_011095187.1|4088501_4088729_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MRIVSVFKNGNNRAIRLPRDMDFEGVNELEIVREGDTIMLRPVKPNWHSFLQEERADADFMTERQDVVEEGRFEL
>NZ_CP007744.1|WP_011095188.1|4089626_4090046_-|YjbQ-family-protein
MWTQYEIRLKPKARGFHLVTDEILAQVVALRQIKVGLMHVFIKHTSAALTINENADPTVRQDFESFFNRLVPEDEPYYRHTYEGSDDMPAHLKGSLLGNSLTIPITNGRLNIGTWQGIYLCEHRNHGGSRSLVVTLNGE
>NZ_CP007744.1|WP_039293545.1|4090063_4092898_-|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLIIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDHDVPLDAQTVSQMVDNVLAQPEGKRLMLLAPIVKDRKGEHSKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALDLSGGSVVVADMDDPTQPELLFSANFACPVCGYSMHELEPRMFSFNNPAGACPSCDGLGVQQFFDPARVVQNSELSLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDIDAPFEGLNAEVQKVILYGSGKENVEFKYINDRGDTSVRRHPFEGVLHNMERRYKETESTAVREELAKFISNRSCASCGGTRLREEARNVFVEQTTLPQISDMSIGHAMTFFKNMKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLVHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQIVAEGTMDEIMAVPGSLTGQFLSGKRKIEIPKQRVPADPTKVLKLIGAKGNNLKDVTLTLPVGLFTCVTGVSGSGKSTLINDTLFPLAQRQLNGATLAEPAAYREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPESRTRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKSKRYNRETLEIKYKGKGIHEVLDMTIEEAREFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIEQLLTVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEESHTARFLRPILAREA
>NZ_CP007744.1|WP_011095190.1|4093143_4093707_+|single-stranded-DNA-binding-protein
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQPQGGWGQPQQPQGGNQFSGGAQAQQRPAQNASSSQNNAPAQSNEPPMDFDDDIPF
>NZ_CP007744.1|WP_039293548.1|4093952_4095809_+|amidohydrolase
MDKNSAHRTANKNLSQNTANKAPSPSSGNATTDYSLPPNTSFRLAALAVTVSGLLFSSSTLMAAETAETADLVLRNGNIYTVNQGQPWAEAVAVRDGRYVFIGSNAQAAEFIGPKTQVVDLNGSMAMPGINDVHAHPLDGGYEDIYSCNFSQKSSLDDILSQVSECAQKAGPGEWVIGSAWGSPRMAELSTTEALAKLDKVSNGRPVILRDDSYHNRWINSEAMRLAAITAQSVSPAGGVIVKDAKTGEPTGLLQEFPAFQHVQSLVPVRTEEQRLTSGRGATKTMVSLGITGVQEAVSSEVNLRIWSKIDRAEGLPLRIIGSIVSTPLLDEGAAGLELVARRDVYRTTNFFPDRFKFVLDGVPPAHTAKLIEPYLPTQAHGDHYHGDTHYTTEQVVEILSKLDKQGISTKLHAAGDGSLRLALDAVEQVRKINGPNGPMHQIAHTHLISPQDMPRFAQLRVAADLSPMLWFPSDMTNASVVTIGEERMKDFVPTVKLLRSGAVVAGGSDWPAGGPTPSPWIGIEGLVTRQNPLGDAPGTLAPEEAVDLPEAIRIYTINSAKAMGIEKETGSVELGKSADLIVLDRHLFNVPIKQVHRANVVKTYFKGQLVHSAPEKS
>NZ_CP007744.1|WP_039295248.1|4096000_4096459_+|GNAT-family-N-acetyltransferase
MMNSDQEIMVNPVEPDDYNQWLPYWESYQTFYNVQLTDEVTETTWDRFFKADIPVHCAVAREGLRIIGFVHFVFHDSTWGVNRYCYLEDLFVDPTTRGKNVGKKLIEYVREKAQEKHCVRLYWHTQETNKTAQRLYDWVAEKPGVIEYRMPL
>NZ_CP007744.1|WP_039293551.1|4096526_4097117_+|hypothetical-protein
MNYQSTPLFIYTVRIFFTICLCGALAVAGISAPVFYLLAMKLAYPVILSLRLHSLSEKGIAFLPKEKSEWMVYVHGIPVRETRTSLTNPYFFSAESIRTFSLRAYTGKLLIQICAVILLVQQAMAINWPWLYLGVIIVALWFAYALAMTVIELVSIMRDRWFIEKLISPSQSEWYGGYIDFRDYRVAVFERLLSLK
>NZ_CP007744.1|WP_011095193.1|4097237_4097669_-|carboxymuconolactone-decarboxylase-family-protein
MSMLRLPYQTLSAEAYQGFGIAKKALNKSSLGKQLIELVYLRVSQINGCAFCLEMHASALRADGVPDAKLDSLAGWRVSEQFNERERVALAWTESLVDVARSHAPDEDFEPLKAHFSDAEIADLSFAVALMSAFNRLAIGMRQ
>NZ_CP007744.1|WP_039293554.1|4097809_4098241_-|GNAT-family-N-acetyltransferase
MSTFRLSLIESDQDYLACFDVMRELRPHLPDAATFTAQARRQAGQGYRLLAAWQDDLVMGLVGYRVQENLLYGRFLYVDDLVAAVGVRDQGLGGQLIEAMREEAQRQNCAHLVLDTALSNALAQRFYFRQGLLSKGLHFSQAL

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Crispr_ID: NZ_CP007744_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007744_9

4089018-4089586

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATACGGCAGTGAAC	PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTANAGGCAGCTTAGAAA	CRT

9 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NZ_CP007744_9

>merge|NZ_CP007744|9|4089018-4089586|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTACAGGCAGCTTAGAAAAGCTCCGACCGACATGCGCTTAAAGGCGGCGAGTTCACTGCCGTACAGGCAGCTTAGAAAATGCAGATATTGTAACTAAGCATCATATTGCATGTTCACTGCCGTACAGGCAGCTTAGAAATGTAGGCCATATAACAAATACTCAAAGATAACGTTCACTGCCGTATAGGCAGTTTAGAAATTGCGATTGGCACCGTTAACCGCTCAGTGACCATTCACTGCCGTATAGGCAGCTTAGAAATCCAGTACTCAGGATCGTGTTGGTACGATAAAGTTCACTGCCGTATAGGCAGCTTAGAAAAGTTCTGACACTCGTTAAACGTCATAACGCGCGTTCACTGCCGTACAGGCAGCTTAGAAAGAAATATCCACCTGGACACTGTCCATAAAGAAGTTCACTGCCGTATAGGCAGCTTAGAAAACGACGGATAGTCTCTGTCTGACGAACGCAACGTTCACTGCCGTATAGGCAGCTTAGAAAGCCCTGAAAAAAATGGGTTGTGATGACCATGCGTTCACTGCCGTGCAGGCAGTTCAGTGT

>NZ_CP007744|9|2|4089018-4089526|PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCTCCGACCGACATGCGCTTAAAGGCGGCGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATGCAGATATTGTAACTAAGCATCATATTGCAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGTAGGCCATATAACAAATACTCAAAGATAAC
GTTCACTGCCGTATAGGCAGTTTAGAAA	TTGCGATTGGCACCGTTAACCGCTCAGTGACC
ATTCACTGCCGTATAGGCAGCTTAGAAA	TCCAGTACTCAGGATCGTGTTGGTACGATAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTTCTGACACTCGTTAAACGTCATAACGCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GAAATATCCACCTGGACACTGTCCATAAAGAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACGACGGATAGTCTCTGTCTGACGAACGCAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP007744|9|10|4089018-4089586|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCTCCGACCGACATGCGCTTAAAGGCGGCGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATGCAGATATTGTAACTAAGCATCATATTGCAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGTAGGCCATATAACAAATACTCAAAGATAAC
GTTCACTGCCGTATAGGCAGTTTAGAAA	TTGCGATTGGCACCGTTAACCGCTCAGTGACC
ATTCACTGCCGTATAGGCAGCTTAGAAA	TCCAGTACTCAGGATCGTGTTGGTACGATAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTTCTGACACTCGTTAAACGTCATAACGCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GAAATATCCACCTGGACACTGTCCATAAAGAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACGACGGATAGTCTCTGTCTGACGAACGCAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCCCTGAAAAAAATGGGTTGTGATGACCATGC
GTTCACTGCCGTGCAGGCAGTTCAGTGT

>NZ_CP007744|9|2|4089018-4089586|CRT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCTCCGACCGACATGCGCTTAAAGGCGGCGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATGCAGATATTGTAACTAAGCATCATATTGCAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGTAGGCCATATAACAAATACTCAAAGATAAC
GTTCACTGCCGTATAGGCAGTTTAGAAA	TTGCGATTGGCACCGTTAACCGCTCAGTGACC
ATTCACTGCCGTATAGGCAGCTTAGAAA	TCCAGTACTCAGGATCGTGTTGGTACGATAAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTTCTGACACTCGTTAAACGTCATAACGCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GAAATATCCACCTGGACACTGTCCATAAAGAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACGACGGATAGTCTCTGTCTGACGAACGCAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCCCTGAAAAAAATGGGTTGTGATGACCATGC
GTTCACTGCCGTGCAGGCAGTTCAGTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007744.1\|WP_039295248.1\|4096000_4096459_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP007744.1\|WP_011095193.1\|4097237_4097669_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_CP007744.1\|WP_011095187.1\|4088501_4088729_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
NZ_CP007744.1\|WP_039293548.1\|4093952_4095809_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490
NZ_CP007744.1\|WP_011095190.1\|4093143_4093707_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236362
NZ_CP007744.1\|WP_039293542.1\|4087148_4087703_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP007744.1\|WP_039293554.1\|4097809_4098241_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP007744.1\|WP_011095186.1\|4088088_4088505_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NZ_CP007744.1\|WP_039293545.1\|4090063_4092898_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP007744.1\|WP_039293535.1\|4080189_4083486_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP007744.1\|WP_039293538.1\|4083851_4085183_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
NZ_CP007744.1\|WP_011095245.1\|4098332_4099751_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP007744.1\|WP_071598487.1\|4076660_4077065_-\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NZ_CP007744.1\|WP_039295246.1\|4079212_4080193_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP007744.1\|WP_011095246.1\|4099791_4100841_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP007744.1\|WP_011095183.1\|4086125_4087139_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP007744.1\|WP_039293551.1\|4096526_4097117_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007744.1\|WP_011095188.1\|4089626_4090046_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
NZ_CP007744.1\|WP_011095182.1\|4085179_4086112_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NZ_CP007744.1\|WP_080641334.1\|4077057_4077915_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP007744.1\|WP_011095193.1\|4097237_4097669_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	1.49874e-28
NZ_CP007744.1\|WP_011095246.1\|4099791_4100841_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.96833e-78
NZ_CP007744.1\|WP_011095187.1\|4088501_4088729_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	1.08552e-09
NZ_CP007744.1\|WP_039293548.1\|4093952_4095809_+\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	4.05038e-140
NZ_CP007744.1\|WP_011095190.1\|4093143_4093707_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	4.63274e-107
NZ_CP007744.1\|WP_039293542.1\|4087148_4087703_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	9.21455e-99
NZ_CP007744.1\|WP_039293554.1\|4097809_4098241_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.10938e-10
NZ_CP007744.1\|WP_011095186.1\|4088088_4088505_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	5.24573e-43
NZ_CP007744.1\|WP_039293545.1\|4090063_4092898_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP007744.1\|WP_039293535.1\|4080189_4083486_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP007744.1\|WP_039293538.1\|4083851_4085183_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	0
NZ_CP007744.1\|WP_011095245.1\|4098332_4099751_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	7.38875e-138
NZ_CP007744.1\|WP_071598487.1\|4076660_4077065_-\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	2.06455e-28
NZ_CP007744.1\|WP_039295246.1\|4079212_4080193_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP007744.1\|WP_011095183.1\|4086125_4087139_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP007744.1\|WP_011095188.1\|4089626_4090046_-\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	2.21723e-62
NZ_CP007744.1\|WP_011095182.1\|4085179_4086112_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	5.90315e-155
NZ_CP007744.1\|WP_039295248.1\|4096000_4096459_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.63809e-16

>NZ_CP007744.1|WP_011095187.1|4088501_4088729_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MRIVSVFKNGNNRAIRLPRDMDFEGVNELEIVREGDTIMLRPVKPNWHSFLQEERADADFMTERQDVVEEGRFEL
>NZ_CP007744.1|WP_011095186.1|4088088_4088505_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MSRLFMLDTNICSFIMREHPSAVIEKLQQCTLRRDRIVVSAITYAEMRFGAVGKKASPRHMLLVDAFCRRLDAILPWDSAAVDATTKIKIALAAAVTPIGPNDTAIAGHAISAKAILVTNNLREFERVPELILEDWVK
>NZ_CP007744.1|WP_039293542.1|4087148_4087703_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIDIRVQPDPEFTASQLLNALFAKLHRVLGQLANGKIGISFPEVGKTLGECLRLHGTEDALSTLEKTSWLKGLRDYTQVSECKVVPNGVKFRTVRRVQLKSSAERLRRRSVSKGWLTAAEAAARIPDAVEKRSALPFVQIKSLSNGQMFFVFVEHGPLQNAPTAGRFSSYGLSTAATVPWF
>NZ_CP007744.1|WP_011095183.1|4086125_4087139_+|type-I-F-CRISPR-associated-protein-Csy3
MAKAATTLKTASVLAFERKLANSDALMYAGNWAQQDNWTAIAIQEKSVRGTISNRLKNALTSDPAKLDAEIQKANLQKVDVAALPFGADTLKIVFTLRVLGNLAQPSVCNDQDYQTALGDIITGYAQEQGFSTLAARYAENIANGRFLWRNRVGAEAIRVVVTKKGERSWEFNGEDYSLRQFSQPAGDLAALTQAIEKGLAGDASALFTVEAYVQLGNGQEVFPSQELVLDEKARNGKSKILYQVNDVAAIHSQKIGNALRTIDDWYPAADEAGPIAVEPYGSVTSRGKAYRQPREKMDFYTLLDNWVIKGDVPMPEQQHYVIATLIRGGVFGEKGE
>NZ_CP007744.1|WP_011095182.1|4085179_4086112_+|type-I-F-CRISPR-associated-protein-Csy2
MSTLIILRRIQVENANAIAGLTYGFPAITHFLGFTHALSRKLQASHGLTLEGCGVVSHQHQLHAYGSSWERSFALTRNPLTKEAKTAAFNEEGRMHMTVSLLIRCDGQIPADTTALCEHLKQQAQCQRLAGGTVIDIERVTVQSLPVDEAETRGVMRRLLPGFVLRDRTSLLHRHFQTLQQAKPQAEMIDAWLDFAALKMQAERDPSDETVQWKYLPKPGDGGFLTPLMIGYRAISPLYAPGEVDKTRDPHTPFCFAEAAYGIGEWQGAHRISDISQILWEYDYQNGDYHCRQVADTHSVAEDTSYEFDY
>NZ_CP007744.1|WP_039293538.1|4083851_4085183_+|type-I-F-CRISPR-associated-protein-Csy1
MRNGLPEFILSYINNRKQAKLDAFDKEAEKKRATLSGEALAVAELELAQARREIELKHEVRNWLTDAASRAGQISLVTHALKFTHSDAKGSSVFSAETVADAKTLSTATLEQPAIDAVGNAAALDVAKLLQTEHDGDSLVAALQRGDHSALEALAENPEQLAQWLTGFQQVFTNRQPSSHKLAKQIYFPLASGEYHLLSPLYSSSLAQALYQRINAVRFGDEAKAIRQAQRTNQWHDQLSISYPNLAVQNMGGTKPQNISALNSSRSGRSYLLSSAPPQWNSIEKPPQQHESIFRPHGEVDYHTRATLAQMQRFLLSVKDVENNRDIRQQRLRYLDQLIDQLFFYVASVQNLPVGWSAESELKRPQQLWLDPYRAETDTVFRREREAGDWRQAVAYDFGRWLNRRLKHENLIFGEVERREWSTAALFKRRMREMESALKEELA
>NZ_CP007744.1|WP_039293535.1|4080189_4083486_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISECNKRALVETRRILDQFAERKGERSWQTAITLEGLNTLRKLLRKTARRNTAVACHWVRSTNHTELLWVVGNLRRFNAQGSVPTNTTSRDVLRTKDENPWHSAEVFSLLAAIAGLFHDVGKANMLFQAGLSGTAPRSQPYRHEWVSLRLFQAFVGEQDDKAWLTTLSMITSEAETELLAGLQRDKPTFSDSPFSTLPPLAQTIAWLIVSHHRLPVFNKSTELAPNSRPPQLDYAETWLTDHLSPQWNALNHYKTDCSPYEREQNWQFPNGTPLRSAVWRDKARKFAGRALKLPSFMHFSQLEQRLTVHLARLALMLADHHYSAGAATIGWQDITYPVWANTDRKTGVYKQRLDEHCVGVGQNALLLGRSLPHLRDTLPAITRHKGFRQRSTHPRFRWQDRAFDLACSIRDASKQHGFFGVNMASTGRGKTFANARIMYGLSDESIGCRFSVALGLRTLTLQTGDALRQRLKLDEDDLAVLIGSQAVQDLHEMRQENEARQQNTPQTGSESADPLFSEHQYVRYDGSLDDGRLKAWLERSPTLHQLLSAPVLITTIDHLMPATEGLRGGHQIAPMLRLLTSDLVLDEPDDFGLEDLPALCRLVNWAGMLGSRVLLSSATLPPALIRALFDAYLDGRAAWQQAYGTPNTPLNVCCGWFDEFDCQHEQYGDVKDFMVSHDAFVHQRLKNLTKDELPLRFATIVPVSSSSKNKDDVHLSVAQAIHPRMFDLHSQHHQQHENGKTVSLGLVRMANIDPLVAVARQLIAIPSPPDTCIHYCIYHSQHPLAMRSHIEQRLDAALMRNDINALWQVEEIRQAIENSPQQHHVFVVLATSVAEVGRDHDYDWAIVEPSSMRSLIQLAGRILRHRQDKQYVPKTPNIYLLSHNIRALRGKDIAYCKPGFESQDDSLDTHDLHQLLQEKEYRHLSAAPRIVQPTSFAKPLSLVALEHAVLGKTLLGLKNQKLDDLKRPPAAFWWRAHPHWNGELQRRTPFRQSAKDEAYYLWIADDDEEPVFMVQDDGPSGWKQSDIARPVTLDMAEGVSAWIEQDYHALYQRLAEEKQWELSWVSARFGEIRLREEEDWYWHPLLGVFGALS
>NZ_CP007744.1|WP_039295246.1|4079212_4080193_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MDNAFSPSDLKTILHSKRANVYYLQHCRILVNGGRVEYVTEEGNQSLYWNIPIANTSVVMLGTGTSVTQAAMREFARAGVMIGFCGGGGTPLFAANEAEIAVSWLSPQSEYRPTEYLQDWVSFWFDDEKRLAAAIAFQQVRIAQIRQHWLGSRLSRESRFTFKSEHLQALLDRYQKGLTDCRTSNDVLVQEAMMTKALYRLAANAVSYGDFTRAKRGGGTDLANRFLDHGNYLAYGLAAVSTWVLGLPHGLAVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMEGEDDQEFRQRCLTAFQQSEALDVMIGSLQDVASKLSQVAR
>NZ_CP007744.1|WP_080641334.1|4077057_4077915_-|hypothetical-protein
MKYDPVLKTLVDDDYRLEDHLDFKKQHADINYQKLHAQLNEINNDNIHAILTAQEATYFLQTLCTPNPNQSWKTAMFGCTDPLSSFAGNIAEAVSVSRIVIEIKGFGVTATEYVGKNGSKYIKLSGYPGVRKYLDATRYLVGNQKILDMGIGTKGIESGIATGARFCIIFSAAYRAVELMLKDEYALTDFFVNLTMDAAKLAVSIGAAWGAKTLATTAMVTGGSVVLIACGIFLVGFAVGFSLFWLDNEYKISETIIKNLKSHKKQYTPYHPDQFFQAWGRYSRG
>NZ_CP007744.1|WP_071598487.1|4076660_4077065_-|DUF1240-domain-containing-protein
MVKINRPFFFIYSVFLFFLSCFISWFSLSGYVDFFQSSDTVIFSWKLGLMVFGSPIIFYFSYFGFLSAIKNRPIKTNSKLSNLLVAIFIFGAIISFISSVYISYSLNEQGYATCPKKSWIDPNKYVKNIAICKE
>NZ_CP007744.1|WP_011095188.1|4089626_4090046_-|YjbQ-family-protein
MWTQYEIRLKPKARGFHLVTDEILAQVVALRQIKVGLMHVFIKHTSAALTINENADPTVRQDFESFFNRLVPEDEPYYRHTYEGSDDMPAHLKGSLLGNSLTIPITNGRLNIGTWQGIYLCEHRNHGGSRSLVVTLNGE
>NZ_CP007744.1|WP_039293545.1|4090063_4092898_-|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLIIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDHDVPLDAQTVSQMVDNVLAQPEGKRLMLLAPIVKDRKGEHSKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALDLSGGSVVVADMDDPTQPELLFSANFACPVCGYSMHELEPRMFSFNNPAGACPSCDGLGVQQFFDPARVVQNSELSLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDIDAPFEGLNAEVQKVILYGSGKENVEFKYINDRGDTSVRRHPFEGVLHNMERRYKETESTAVREELAKFISNRSCASCGGTRLREEARNVFVEQTTLPQISDMSIGHAMTFFKNMKLSGQRAQIAEKVLKEIGDRLKFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLVHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQIVAEGTMDEIMAVPGSLTGQFLSGKRKIEIPKQRVPADPTKVLKLIGAKGNNLKDVTLTLPVGLFTCVTGVSGSGKSTLINDTLFPLAQRQLNGATLAEPAAYREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPESRTRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKSKRYNRETLEIKYKGKGIHEVLDMTIEEAREFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIEQLLTVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEESHTARFLRPILAREA
>NZ_CP007744.1|WP_011095190.1|4093143_4093707_+|single-stranded-DNA-binding-protein
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQPQGGWGQPQQPQGGNQFSGGAQAQQRPAQNASSSQNNAPAQSNEPPMDFDDDIPF
>NZ_CP007744.1|WP_039293548.1|4093952_4095809_+|amidohydrolase
MDKNSAHRTANKNLSQNTANKAPSPSSGNATTDYSLPPNTSFRLAALAVTVSGLLFSSSTLMAAETAETADLVLRNGNIYTVNQGQPWAEAVAVRDGRYVFIGSNAQAAEFIGPKTQVVDLNGSMAMPGINDVHAHPLDGGYEDIYSCNFSQKSSLDDILSQVSECAQKAGPGEWVIGSAWGSPRMAELSTTEALAKLDKVSNGRPVILRDDSYHNRWINSEAMRLAAITAQSVSPAGGVIVKDAKTGEPTGLLQEFPAFQHVQSLVPVRTEEQRLTSGRGATKTMVSLGITGVQEAVSSEVNLRIWSKIDRAEGLPLRIIGSIVSTPLLDEGAAGLELVARRDVYRTTNFFPDRFKFVLDGVPPAHTAKLIEPYLPTQAHGDHYHGDTHYTTEQVVEILSKLDKQGISTKLHAAGDGSLRLALDAVEQVRKINGPNGPMHQIAHTHLISPQDMPRFAQLRVAADLSPMLWFPSDMTNASVVTIGEERMKDFVPTVKLLRSGAVVAGGSDWPAGGPTPSPWIGIEGLVTRQNPLGDAPGTLAPEEAVDLPEAIRIYTINSAKAMGIEKETGSVELGKSADLIVLDRHLFNVPIKQVHRANVVKTYFKGQLVHSAPEKS
>NZ_CP007744.1|WP_039295248.1|4096000_4096459_+|GNAT-family-N-acetyltransferase
MMNSDQEIMVNPVEPDDYNQWLPYWESYQTFYNVQLTDEVTETTWDRFFKADIPVHCAVAREGLRIIGFVHFVFHDSTWGVNRYCYLEDLFVDPTTRGKNVGKKLIEYVREKAQEKHCVRLYWHTQETNKTAQRLYDWVAEKPGVIEYRMPL
>NZ_CP007744.1|WP_039293551.1|4096526_4097117_+|hypothetical-protein
MNYQSTPLFIYTVRIFFTICLCGALAVAGISAPVFYLLAMKLAYPVILSLRLHSLSEKGIAFLPKEKSEWMVYVHGIPVRETRTSLTNPYFFSAESIRTFSLRAYTGKLLIQICAVILLVQQAMAINWPWLYLGVIIVALWFAYALAMTVIELVSIMRDRWFIEKLISPSQSEWYGGYIDFRDYRVAVFERLLSLK
>NZ_CP007744.1|WP_011095193.1|4097237_4097669_-|carboxymuconolactone-decarboxylase-family-protein
MSMLRLPYQTLSAEAYQGFGIAKKALNKSSLGKQLIELVYLRVSQINGCAFCLEMHASALRADGVPDAKLDSLAGWRVSEQFNERERVALAWTESLVDVARSHAPDEDFEPLKAHFSDAEIADLSFAVALMSAFNRLAIGMRQ
>NZ_CP007744.1|WP_039293554.1|4097809_4098241_-|GNAT-family-N-acetyltransferase
MSTFRLSLIESDQDYLACFDVMRELRPHLPDAATFTAQARRQAGQGYRLLAAWQDDLVMGLVGYRVQENLLYGRFLYVDDLVAAVGVRDQGLGGQLIEAMREEAQRQNCAHLVLDTALSNALAQRFYFRQGLLSKGLHFSQAL
>NZ_CP007744.1|WP_011095245.1|4098332_4099751_+|PLP-dependent-aminotransferase-family-protein
MDMQQLKPSREHDAPLYLQLYRRYRDAIIARKLHPGDRVPSVRSLASELNLARGTVEMAYQMLASEGYFLTRGPAGTIVSPQLEKLTESGYSTTSLSQIPSRPQIETAQVQPFQLGLPALDAFPRKTWARLAGHNLRTLDTAAMISPDPAGYEPLRRAIATYLGISRGITCTHEQVFITAGYRGALELVCRTLLQPGDIGWFEDPGYIFARQFLARAGMHLEPVPVDEEGLNVDIGQQRAAEARFAVVTPTHQSPMGMALSLPRRLQLLEWASHHRSWIIEDDYDSEFRYHGRPLPALKSLDRDGRVLYTGTFSKVLFPGLRLAYLVVPEPQIERFRDTANHFCCAGSILPQATVANFMEQGHFARHLRRMRSLYAIRRGYLVDELLQALGSHLTVQPQAGGIHVLATLTARGNDQSLAAAAQSHGLAIQALNDWRTSKTSRGGLLMGFTNVTEPAMAKALVHRLAAAIGLS
>NZ_CP007744.1|WP_011095246.1|4099791_4100841_-|LacI-family-DNA-binding-transcriptional-regulator
MATLKDIADRAGVSISTVSRALNGTAPISAKVRQHIMAIATEQGYPLHKVGKATAAPTEPLRHILLATPRNLMLESEYNLVSLTLINALKTLCLQRNIQLRPFLGEHDTINEQQLLRELQGGKESGILIVNDDHPTLLNAVAESGIPAVLINGEDPSMRLSSVTPANHYAAAAAVRYLIDQGHTRILHLTWTSRMTIKQRERGYRDALAQAGIAVDDDLILSLPDFHPRTARDALLRWLTANPDRLGVTAIFCAADNQAIGVIDALYQHGLRVPEDMSVMGMDDILPFDMLPVSLTTVHLPFETIARAALQLLAQQMTPSQALGIAQRTELAGQVVVRESVRRVGTTTG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP007744_9	9.5\|4089287\|32\|NZ_CP007744\|PILER-CR,CRISPRCasFinder,CRT	4089287-4089318	32	NZ_CP007744.1	1017011-1017042	0	1.0

1. spacer 9.5|4089287|32|NZ_CP007744|PILER-CR,CRISPRCasFinder,CRT matches to position: 1017011-1017042, mismatch: 0, identity: 1.0

tccagtactcaggatcgtgttggtacgataaa	CRISPR spacer
tccagtactcaggatcgtgttggtacgataaa	Protospacer
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MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007744_9	9.1\|4089046\|32\|NZ_CP007744\|PILER-CR,CRISPRCasFinder,CRT	4089046-4089077	32	MT012729	Salmonella phage vB_SenTO17, complete genome	14893-14924	4	0.875
NZ_CP007744_8	8.1\|4087861\|32\|NZ_CP007744\|CRISPRCasFinder	4087861-4087892	32	KY271400	Klebsiella phage 6 LV-2017, complete genome	9070-9101	7	0.781
NZ_CP007744_9	9.3\|4089167\|32\|NZ_CP007744\|PILER-CR,CRISPRCasFinder,CRT	4089167-4089198	32	KT630649	Salmonella phage SEN34, complete genome	21546-21577	7	0.781
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	MF679144	Escherichia coli plasmid pBJ114-78, complete sequence	32168-32199	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NC_015965	Salmonella enterica subsp. enterica serovar Typhimurium plasmid R621a, complete sequence	1166-1197	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP025455	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76334 plasmid pSAG-76334, complete sequence	1167-1198	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_KM409652	Escherichia coli strain REL5382 plasmid pB15, complete sequence	1167-1198	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_KP789019	Escherichia coli strain WCHEC13-8 plasmid pCMY42, complete sequence	63563-63594	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NC_011752	Escherichia coli 55989 plasmid 55989p, complete sequence	7142-7173	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP024270	Escherichia coli strain F8111-1SC3 plasmid unnamed1	19603-19634	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_KT754162	Shigella dysenteriae 1 strain BU53M1 plasmid pBU53M1, complete sequence	30557-30588	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_KT754167	Shigella dysenteriae 1 strain 69-3818 plasmid p69-3818, complete sequence	50469-50500	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP024226	Escherichia coli O169:H41 strain 2014EL-1345-2 plasmid unnamed3	33522-33553	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	CP042952	Escherichia coli strain D8-1 plasmid pD8-1_1, complete sequence	23562-23593	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP024468	Shigella dysenteriae strain BU53M1 plasmid pBU53M1, complete sequence	40149-40180	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP034963	Escherichia coli strain WCHEC020032 plasmid pCMY42_020032, complete sequence	758-789	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	MN007140	Escherichia coli strain 91 plasmid p91_CMY-42, complete sequence	926-957	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP026770	Shigella flexneri Y strain 93-3063 plasmid unnamed2	20464-20495	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP054364	Escherichia coli strain SCU-171 plasmid pSCU-171-1, complete sequence	61340-61371	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP026726	Escherichia coli strain 266917_2 plasmid p266917_2_03, complete sequence	758-789	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NC_019000	Escherichia coli plasmid pHUSEC41-2, complete sequence	7142-7173	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP009052	Escherichia coli NCCP15648 plasmid p15648-2, complete sequence	1400-1431	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP009053	Escherichia coli NCCP15648 plasmid p15648-3, complete sequence	7142-7173	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP041959	Escherichia coli strain EC2 plasmid pEC2_4, complete sequence	758-789	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP024230	Escherichia coli O25:NM strain 2014EL-1343-2 plasmid unnamed2	21545-21576	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NC_014477	Escherichia coli plasmid pCT, complete sequence	1399-1430	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP018993	Escherichia coli strain Ecol_AZ147 plasmid pECAZ147_2, complete sequence	38987-39018	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	AP017892	Escherichia coli plasmid pN23 DNA, complete sequence, strain: N23	58349-58380	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	AP017893	Escherichia coli plasmid pS11 DNA, complete sequence, strain: S11	58349-58380	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP034255	Escherichia coli strain IVRI Kol CP4 plasmid pESBL-EA11	20961-20992	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	KY463221	Escherichia coli plasmid pCMY-42, complete sequence	3148-3179	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP021533	Escherichia coli strain AR_0149 plasmid tig00000220, complete sequence	31082-31113	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	76341-76372	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_AP019190	Escherichia coli strain M217 plasmid pM217_I1, complete sequence	1166-1197	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP033160	Escherichia coli strain CM IVRI KOL-1 plasmid pESBL-EA11p1ESCUM	19906-19937	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP048373	Escherichia coli strain 164 plasmid pC-F-163_B, complete sequence	758-789	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP024152	Escherichia coli strain 14EC033 plasmid p14EC033e, complete sequence	70164-70195	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP029119	Escherichia coli strain AR435 plasmid unnamed6	20475-20506	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NC_032099	Shigella dysenteriae 1 strain 92-9000 plasmid p92-9000, complete sequence	77748-77779	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP048312	Escherichia coli strain 32-4 plasmid p32-4_B, complete sequence	1132-1163	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP023900	Escherichia coli strain FDAARGOS_433 plasmid unnamed6, complete sequence	33616-33647	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP042248	Escherichia coli strain BCE049 plasmid pBCE049-2, complete sequence	758-789	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NC_019061	Escherichia coli plasmid pPWD4_103, complete sequence	1167-1198	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP018946	Escherichia coli strain Ecol_224 plasmid pEC224_2, complete sequence	40906-40937	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP023367	Escherichia coli strain 1428 plasmid p111, complete sequence	1239-1270	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP023957	Escherichia coli strain FDAARGOS_448 plasmid unnamed3, complete sequence	36960-36991	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP021882	Escherichia coli strain AR_0137 plasmid tig00001287_pilon, complete sequence	4429-4460	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP023362	Escherichia coli strain 1943 plasmid p85, complete sequence	713-744	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_KT868530	Salmonella enterica subsp. enterica serovar Enteritidis strain SE115 plasmid pSE115, complete sequence	758-789	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP025709	Escherichia coli strain YDC107 plasmid pYDC107_85 map unlocalized	16056-16087	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP029367	Escherichia coli strain WCHEC035148 plasmid pCMY42_035148, complete sequence	758-789	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP019996	Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1781 plasmid pSAN1-08-1092, complete sequence	1167-1198	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP031111	Escherichia coli strain AMSCJX02 plasmid pAMSC6, complete sequence	32802-32833	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP019215	Escherichia coli strain WCHEC050613 plasmid pI_050613, complete sequence	758-789	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP026778	Shigella dysenteriae strain 69-3818 plasmid unnamed1	57686-57717	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP022673	Shigella sonnei strain 866 plasmid p866, complete sequence	289-320	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NC_022885	Escherichia coli strain LK-NARMP plasmid pKPC-LKEc, complete sequence	1167-1198	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	CP053331	Salmonella enterica subsp. salamae serovar 60:z10:z39 strain 2011K-1889 plasmid unnamed2, complete sequence	16320-16351	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP040455	Escherichia coli strain UPEC132 plasmid unnamed2, complete sequence	88344-88375	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP015838	Escherichia coli strain MS6198 plasmid pMS6198D, complete sequence	50033-50064	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_LN890525	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 2, complete sequence	57951-57982	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP034804	Escherichia coli strain 2009C-3554 plasmid p2009C-3554-1, complete sequence	28012-28043	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	MH430881	Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP-CRO, complete sequence	185134-185165	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP050758	Salmonella enterica subsp. enterica serovar Indiana strain SI173 plasmid pSI173-1, complete sequence	758-789	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	MH884653	Salmonella sp. strain Sa27 plasmid pSa27-TC-CIP, complete sequence	139694-139725	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	MH884654	Salmonella sp. strain Sa27 plasmid pSa27-HP, complete sequence	1801-1832	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP042936	Escherichia coli 042 plasmid p2-Ec-BERN-042, complete sequence	5638-5669	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_LT985248	Escherichia coli strain 720 plasmid RCS48_pI, complete sequence	1166-1197	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_LT985270	Escherichia coli strain 716 plasmid RCS56_p, complete sequence	14662-14693	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_LT985256	Escherichia coli strain 580 plasmid RCS49_p, complete sequence	1166-1197	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_LT985278	Escherichia coli strain 499 plasmid RCS68_p, complete sequence	20270-20301	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP031656	Escherichia coli strain UK_Dog_Liverpool plasmid pCARB35_03, complete sequence	758-789	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_MK758104	Escherichia coli strain 0126:B16 plasmid R16, complete sequence	1205-1236	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_MG904995	Escherichia coli strain 15OD0495 plasmid p15ODAR, complete sequence	25752-25783	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_MH430883	Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CRO, complete sequence	73806-73837	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_MN242251	Escherichia coli strain 5M plasmid pISV_IncI_CMY-42, complete sequence	22087-22118	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_MN702386	Escherichia coli strain LWY24J plasmid pLWY24J-4, complete sequence	758-789	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_MK416155	Escherichia coli strain AR24.2b plasmid pCMY-42, complete sequence	35297-35328	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_MF078004	Escherichia coli strain ET20160881 plasmid pET20160881, complete sequence	11989-12020	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_KY964068	Escherichia coli strain LV23529 plasmid pLV23529-CTX-M-8, complete sequence	78200-78231	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	MF554641	uncultured bacterium clone AA-104 plasmid pFEMG, complete sequence	87472-87503	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	MN816371	Escherichia coli strain A117 plasmid pA117-CTX-M-8, complete sequence	58362-58393	8	0.75
NZ_CP007744_7	7.10\|4078737\|32\|NZ_CP007744\|CRT,PILER-CR,CRISPRCasFinder	4078737-4078768	32	NZ_CP037994	Salmonella enterica subsp. enterica serovar Albany strain sg_wt5 plasmid psg_wt5	68695-68726	8	0.75
NZ_CP007744_9	9.8\|4089467\|32\|NZ_CP007744\|PILER-CR,CRISPRCasFinder,CRT	4089467-4089498	32	MT771346	Gordonia phage MichaelScott, complete genome	47211-47242	8	0.75
NZ_CP007744_9	9.8\|4089467\|32\|NZ_CP007744\|PILER-CR,CRISPRCasFinder,CRT	4089467-4089498	32	MH155867	Gordonia phage Easley, complete genome	45531-45562	8	0.75
NZ_CP007744_9	9.8\|4089467\|32\|NZ_CP007744\|PILER-CR,CRISPRCasFinder,CRT	4089467-4089498	32	MK801729	Gordonia phage Clark, complete genome	46530-46561	8	0.75
NZ_CP007744_9	9.8\|4089467\|32\|NZ_CP007744\|PILER-CR,CRISPRCasFinder,CRT	4089467-4089498	32	MG845393	Gordonia phage Beenie, complete genome	46767-46798	8	0.75
NZ_CP007744_9	9.9\|4089527\|32\|NZ_CP007744\|CRISPRCasFinder,CRT	4089527-4089558	32	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	173166-173197	8	0.75
NZ_CP007744_9	9.9\|4089527\|32\|NZ_CP007744\|CRISPRCasFinder,CRT	4089527-4089558	32	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	401825-401856	8	0.75
NZ_CP007744_9	9.1\|4089046\|32\|NZ_CP007744\|PILER-CR,CRISPRCasFinder,CRT	4089046-4089077	32	NZ_CP034472	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_3, complete sequence	56382-56413	9	0.719
NZ_CP007744_9	9.1\|4089046\|32\|NZ_CP007744\|PILER-CR,CRISPRCasFinder,CRT	4089046-4089077	32	NZ_CP034477	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_3, complete sequence	124649-124680	9	0.719
NZ_CP007744_9	9.2\|4089106\|33\|NZ_CP007744\|PILER-CR,CRISPRCasFinder,CRT	4089106-4089138	33	MH617742	Inoviridae sp. isolate ctbf14, complete genome	2728-2760	9	0.727
NZ_CP007744_9	9.3\|4089167\|32\|NZ_CP007744\|PILER-CR,CRISPRCasFinder,CRT	4089167-4089198	32	NC_011564	Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG1 DNA, complete sequence	17230-17261	10	0.688

1. spacer 9.1|4089046|32|NZ_CP007744|PILER-CR,CRISPRCasFinder,CRT matches to MT012729 (Salmonella phage vB_SenTO17, complete genome) position: , mismatch: 4, identity: 0.875

agctccgaccgacatgcgcttaaaggcggcga	CRISPR spacer
agctccgaccgacacgcgcttaaaggtggagc	Protospacer
**************.***********.** *

2. spacer 8.1|4087861|32|NZ_CP007744|CRISPRCasFinder matches to KY271400 (Klebsiella phage 6 LV-2017, complete genome) position: , mismatch: 7, identity: 0.781

tttcagttcaaacaggccttgccagcagttga	CRISPR spacer
atttggctcaaacaggccttgccagccattgg	Protospacer
 **..*.******************* .***.

3. spacer 9.3|4089167|32|NZ_CP007744|PILER-CR,CRISPRCasFinder,CRT matches to KT630649 (Salmonella phage SEN34, complete genome) position: , mismatch: 7, identity: 0.781

tgtaggcca---tataacaaatactcaaagataac	CRISPR spacer
---atgctattttataacaaatacaaaaagataac	Protospacer
   * **.*   ************  *********

4. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to MF679144 (Escherichia coli plasmid pBJ114-78, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

5. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NC_015965 (Salmonella enterica subsp. enterica serovar Typhimurium plasmid R621a, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

6. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025455 (Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76334 plasmid pSAG-76334, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

7. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KM409652 (Escherichia coli strain REL5382 plasmid pB15, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

8. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KP789019 (Escherichia coli strain WCHEC13-8 plasmid pCMY42, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

9. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NC_011752 (Escherichia coli 55989 plasmid 55989p, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgtg	Protospacer
***** ************** ***   .* *

10. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024270 (Escherichia coli strain F8111-1SC3 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

11. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KT754162 (Shigella dysenteriae 1 strain BU53M1 plasmid pBU53M1, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

12. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KT754167 (Shigella dysenteriae 1 strain 69-3818 plasmid p69-3818, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

13. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024226 (Escherichia coli O169:H41 strain 2014EL-1345-2 plasmid unnamed3) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

14. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to CP042952 (Escherichia coli strain D8-1 plasmid pD8-1_1, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgtg	Protospacer
***** ************** ***   .* *

15. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024468 (Shigella dysenteriae strain BU53M1 plasmid pBU53M1, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

16. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034963 (Escherichia coli strain WCHEC020032 plasmid pCMY42_020032, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

17. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to MN007140 (Escherichia coli strain 91 plasmid p91_CMY-42, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

18. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026770 (Shigella flexneri Y strain 93-3063 plasmid unnamed2) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

19. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054364 (Escherichia coli strain SCU-171 plasmid pSCU-171-1, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgtg	Protospacer
***** ************** ***   .* *

20. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026726 (Escherichia coli strain 266917_2 plasmid p266917_2_03, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

21. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NC_019000 (Escherichia coli plasmid pHUSEC41-2, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgtg	Protospacer
***** ************** ***   .* *

22. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009052 (Escherichia coli NCCP15648 plasmid p15648-2, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

23. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009053 (Escherichia coli NCCP15648 plasmid p15648-3, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgtg	Protospacer
***** ************** ***   .* *

24. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP041959 (Escherichia coli strain EC2 plasmid pEC2_4, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

25. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024230 (Escherichia coli O25:NM strain 2014EL-1343-2 plasmid unnamed2) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

26. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NC_014477 (Escherichia coli plasmid pCT, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

27. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP018993 (Escherichia coli strain Ecol_AZ147 plasmid pECAZ147_2, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

28. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to AP017892 (Escherichia coli plasmid pN23 DNA, complete sequence, strain: N23) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

29. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to AP017893 (Escherichia coli plasmid pS11 DNA, complete sequence, strain: S11) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

30. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034255 (Escherichia coli strain IVRI Kol CP4 plasmid pESBL-EA11) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

31. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to KY463221 (Escherichia coli plasmid pCMY-42, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

32. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021533 (Escherichia coli strain AR_0149 plasmid tig00000220, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

33. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

34. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP019190 (Escherichia coli strain M217 plasmid pM217_I1, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

35. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP033160 (Escherichia coli strain CM IVRI KOL-1 plasmid pESBL-EA11p1ESCUM) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

36. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP048373 (Escherichia coli strain 164 plasmid pC-F-163_B, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

37. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024152 (Escherichia coli strain 14EC033 plasmid p14EC033e, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

38. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029119 (Escherichia coli strain AR435 plasmid unnamed6) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

39. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NC_032099 (Shigella dysenteriae 1 strain 92-9000 plasmid p92-9000, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

40. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP048312 (Escherichia coli strain 32-4 plasmid p32-4_B, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

41. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP023900 (Escherichia coli strain FDAARGOS_433 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

42. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP042248 (Escherichia coli strain BCE049 plasmid pBCE049-2, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

43. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NC_019061 (Escherichia coli plasmid pPWD4_103, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

44. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP018946 (Escherichia coli strain Ecol_224 plasmid pEC224_2, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

45. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP023367 (Escherichia coli strain 1428 plasmid p111, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgtg	Protospacer
***** ************** ***   .* *

46. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP023957 (Escherichia coli strain FDAARGOS_448 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

47. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021882 (Escherichia coli strain AR_0137 plasmid tig00001287_pilon, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

48. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP023362 (Escherichia coli strain 1943 plasmid p85, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

49. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KT868530 (Salmonella enterica subsp. enterica serovar Enteritidis strain SE115 plasmid pSE115, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

50. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP025709 (Escherichia coli strain YDC107 plasmid pYDC107_85 map unlocalized) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

51. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP029367 (Escherichia coli strain WCHEC035148 plasmid pCMY42_035148, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

52. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP019996 (Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1781 plasmid pSAN1-08-1092, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

53. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031111 (Escherichia coli strain AMSCJX02 plasmid pAMSC6, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

54. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP019215 (Escherichia coli strain WCHEC050613 plasmid pI_050613, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

55. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP026778 (Shigella dysenteriae strain 69-3818 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

56. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022673 (Shigella sonnei strain 866 plasmid p866, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

57. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NC_022885 (Escherichia coli strain LK-NARMP plasmid pKPC-LKEc, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

58. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to CP053331 (Salmonella enterica subsp. salamae serovar 60:z10:z39 strain 2011K-1889 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

59. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP040455 (Escherichia coli strain UPEC132 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

60. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015838 (Escherichia coli strain MS6198 plasmid pMS6198D, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

61. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LN890525 (Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

62. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034804 (Escherichia coli strain 2009C-3554 plasmid p2009C-3554-1, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

63. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to MH430881 (Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CIP-CRO, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

64. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP050758 (Salmonella enterica subsp. enterica serovar Indiana strain SI173 plasmid pSI173-1, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

65. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to MH884653 (Salmonella sp. strain Sa27 plasmid pSa27-TC-CIP, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

66. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to MH884654 (Salmonella sp. strain Sa27 plasmid pSa27-HP, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

67. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP042936 (Escherichia coli 042 plasmid p2-Ec-BERN-042, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

68. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LT985248 (Escherichia coli strain 720 plasmid RCS48_pI, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

69. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LT985270 (Escherichia coli strain 716 plasmid RCS56_p, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

70. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LT985256 (Escherichia coli strain 580 plasmid RCS49_p, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

71. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_LT985278 (Escherichia coli strain 499 plasmid RCS68_p, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

72. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031656 (Escherichia coli strain UK_Dog_Liverpool plasmid pCARB35_03, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

73. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MK758104 (Escherichia coli strain 0126:B16 plasmid R16, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

74. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MG904995 (Escherichia coli strain 15OD0495 plasmid p15ODAR, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

75. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MH430883 (Salmonella enterica subsp. enterica serovar London strain 3-5 plasmid pSa44-CRO, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

76. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MN242251 (Escherichia coli strain 5M plasmid pISV_IncI_CMY-42, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

77. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MN702386 (Escherichia coli strain LWY24J plasmid pLWY24J-4, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

78. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MK416155 (Escherichia coli strain AR24.2b plasmid pCMY-42, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

79. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_MF078004 (Escherichia coli strain ET20160881 plasmid pET20160881, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

80. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_KY964068 (Escherichia coli strain LV23529 plasmid pLV23529-CTX-M-8, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

81. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to MF554641 (uncultured bacterium clone AA-104 plasmid pFEMG, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

82. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to MN816371 (Escherichia coli strain A117 plasmid pA117-CTX-M-8, complete sequence) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

83. spacer 7.10|4078737|32|NZ_CP007744|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP037994 (Salmonella enterica subsp. enterica serovar Albany strain sg_wt5 plasmid psg_wt5) position: , mismatch: 8, identity: 0.75

aaatcagccagcaactcatcagggtttacctc	CRISPR spacer
aaatccgccagcaactcatccgggaaggcgta	Protospacer
***** ************** ***   .* *

84. spacer 9.8|4089467|32|NZ_CP007744|PILER-CR,CRISPRCasFinder,CRT matches to MT771346 (Gordonia phage MichaelScott, complete genome) position: , mismatch: 8, identity: 0.75

acgacggatagtctctgtctgacgaacgcaac	CRISPR spacer
tgatcgtcgagtcactgtctgacgaacgcaac	Protospacer
  . **   **** ******************

85. spacer 9.8|4089467|32|NZ_CP007744|PILER-CR,CRISPRCasFinder,CRT matches to MH155867 (Gordonia phage Easley, complete genome) position: , mismatch: 8, identity: 0.75

acgacggatagtctctgtctgacgaacgcaac	CRISPR spacer
tgatcgtcgagtcactgtctgacgaacgcaac	Protospacer
  . **   **** ******************

86. spacer 9.8|4089467|32|NZ_CP007744|PILER-CR,CRISPRCasFinder,CRT matches to MK801729 (Gordonia phage Clark, complete genome) position: , mismatch: 8, identity: 0.75

acgacggatagtctctgtctgacgaacgcaac	CRISPR spacer
tgatcgtcgagtcactgtctgacgaacgcaac	Protospacer
  . **   **** ******************

87. spacer 9.8|4089467|32|NZ_CP007744|PILER-CR,CRISPRCasFinder,CRT matches to MG845393 (Gordonia phage Beenie, complete genome) position: , mismatch: 8, identity: 0.75

acgacggatagtctctgtctgacgaacgcaac	CRISPR spacer
tgatcgtcgagtcactgtctgacgaacgcaac	Protospacer
  . **   **** ******************

88. spacer 9.9|4089527|32|NZ_CP007744|CRISPRCasFinder,CRT matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 8, identity: 0.75

gccctgaaaaaaatgggttgtgatgaccatgc-	CRISPR spacer
agggagaaaaaaatggcttttgatgacc-tgcg	Protospacer
.    *********** ** ******** ***

89. spacer 9.9|4089527|32|NZ_CP007744|CRISPRCasFinder,CRT matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 8, identity: 0.75

gccctgaaaaaaatgggttgtgatgaccatgc-	CRISPR spacer
agggagaaaaaaatggcttttgatgacc-tgcg	Protospacer
.    *********** ** ******** ***

90. spacer 9.1|4089046|32|NZ_CP007744|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034472 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_3, complete sequence) position: , mismatch: 9, identity: 0.719

agctccgaccgacatgcgcttaaaggcggcga	CRISPR spacer
caagaccagcgacctgcgctgaaaggcggcga	Protospacer
 .   * * **** ****** ***********

91. spacer 9.1|4089046|32|NZ_CP007744|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034477 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_3, complete sequence) position: , mismatch: 9, identity: 0.719

agctccgaccgacatgcgcttaaaggcggcga	CRISPR spacer
caagaccagcgacctgcgctgaaaggcggcga	Protospacer
 .   * * **** ****** ***********

92. spacer 9.2|4089106|33|NZ_CP007744|PILER-CR,CRISPRCasFinder,CRT matches to MH617742 (Inoviridae sp. isolate ctbf14, complete genome) position: , mismatch: 9, identity: 0.727

atgcagatattgtaactaagcatcatattgcat	CRISPR spacer
aattgaataatgtaactaagcatcaaattgaag	Protospacer
*  ...*** *************** **** *

93. spacer 9.3|4089167|32|NZ_CP007744|PILER-CR,CRISPRCasFinder,CRT matches to NC_011564 (Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG1 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

tgtaggccatataacaaatactcaaagataac	CRISPR spacer
aaacgaagatataacaaatactgaaagttaag	Protospacer
 .  *.  ************** **** ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

813062 : 821819

Enterobacteria_phage(50.0%)

integrase

attL 811304:811317|attR 824185:824198

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
811304:811317	attL	NA	NA	NA	NA
WP_039290139.1\|813062_815390_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	6.2e-269	60.8
WP_039290142.1\|815400_815742_-	DUF5375 family protein	NA	NA	NA	NA
WP_039290145.1\|815738_816005_-	hypothetical protein	NA	NA	NA	NA
WP_039294697.1\|816001_816196_-	hypothetical protein	NA	NA	NA	NA
WP_039294701.1\|816188_816386_-	host cell division inhibitor Icd-like protein	A0A1W6JPK3	Morganella_phage	7.5e-11	59.6
WP_039281995.1\|816741_816966_-	hypothetical protein	NA	NA	NA	NA
WP_039290147.1\|816962_817223_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.3e-13	57.4
WP_039290148.1\|817769_818531_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-28	36.6
WP_071598516.1\|818527_818776_+	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	1.2e-13	60.3
WP_039290149.1\|819169_820558_+	hypothetical protein	NA	NA	NA	NA
WP_039290150.1\|820631_821819_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	5.1e-102	48.0
824185:824198	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1617963 : 1625867

Bacillus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039290885.1\|1617963_1619373_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	2.2e-51	30.3
WP_039290887.1\|1619385_1620756_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	7.1e-31	27.0
WP_039290889.1\|1620831_1621683_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.0e-44	39.1
WP_011093025.1\|1621679_1622216_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.4e-61	62.0
WP_039290891.1\|1622217_1623087_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.2e-109	66.3
WP_011093027.1\|1623333_1624230_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	6.0e-47	39.6
WP_011093028.1\|1624460_1625867_+	NADP-dependent phosphogluconate dehydrogenase	A0A1D7RI04	Synechococcus_phage	8.6e-32	29.9

DBSCAN-SWA_3

2643605 : 2653103

Tupanvirus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039291611.1\|2643605_2645324_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.2e-57	30.8
WP_039291608.1\|2645461_2645896_+	nitrous oxide-stimulated promoter family protein	NA	NA	NA	NA
WP_009112984.1\|2645937_2646234_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.1e-13	40.0
WP_039291606.1\|2646238_2648626_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	6.0e-09	29.9
WP_011093972.1\|2648640_2649624_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	4.5e-35	39.3
WP_106120997.1\|2649787_2649832_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_005968887.1\|2649936_2650293_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_005968897.1\|2650336_2650534_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_011093973.1\|2650629_2651172_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.8e-15	33.5
WP_011093974.1\|2651174_2653103_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.0e-127	36.2

DBSCAN-SWA_4

2853628 : 2878027

Cronobacter_phage(52.38%)

integrase,tail,plate,holin

attL 2844319:2844334|attR 2873570:2873585

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2844319:2844334	attL	NA	NA	NA	NA
WP_011094141.1\|2853628_2855911_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	2.3e-159	41.4
WP_039275386.1\|2856377_2856539_+	hypothetical protein	NA	NA	NA	NA
WP_039291393.1\|2856804_2857059_-	hypothetical protein	NA	NA	NA	NA
WP_039291391.1\|2857142_2858813_-	hypothetical protein	F1BUJ7	Cronobacter_phage	1.1e-126	46.5
WP_039291389.1\|2858809_2859373_-	hypothetical protein	F1BUJ9	Cronobacter_phage	3.8e-39	53.8
WP_039291383.1\|2859369_2860071_-	hypothetical protein	F1BUK1	Cronobacter_phage	1.7e-28	37.1
WP_039291381.1\|2860071_2860686_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	9.2e-31	39.2
WP_051623282.1\|2860685_2862641_-\|tail	phage tail protein	F1BUK3	Cronobacter_phage	2.0e-50	37.9
WP_039291379.1\|2862647_2863280_-	hypothetical protein	F1BUK5	Cronobacter_phage	4.3e-47	55.1
WP_039291377.1\|2863272_2864457_-\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	7.0e-136	59.8
WP_039291372.1\|2864453_2864783_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	8.7e-28	57.8
WP_039291370.1\|2864779_2866960_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	2.9e-95	34.7
WP_164671199.1\|2866962_2867112_-	hypothetical protein	A5X9I8	Aeromonas_virus	2.7e-05	52.2
WP_039291366.1\|2867156_2867429_-	hypothetical protein	A5X9I7	Aeromonas_virus	3.0e-10	41.2
WP_039291362.1\|2867543_2867918_-	hypothetical protein	W6ART6	Escherichia_phage	9.7e-07	34.9
WP_039291360.1\|2867917_2868259_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	7.9e-40	76.2
WP_039291358.1\|2868255_2868543_-\|holin	holin	C7BGD7	Burkholderia_phage	6.7e-16	55.1
WP_039291352.1\|2868546_2869002_-	DUF2597 family protein	A5X9I1	Aeromonas_virus	2.1e-43	58.3
WP_039291350.1\|2869004_2870144_-	DUF2586 family protein	F1BUL5	Cronobacter_phage	3.7e-118	59.6
WP_051623284.1\|2870145_2870799_-	phage virion morphogenesis protein	F1BUL6	Cronobacter_phage	2.9e-67	60.9
WP_167332633.1\|2870963_2872193_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.2e-215	90.7
WP_051623286.1\|2872314_2872995_-	hypothetical protein	NA	NA	NA	NA
WP_043135156.1\|2873292_2875041_-	hypothetical protein	A0A1B5FPH1	Escherichia_phage	2.6e-280	80.6
2873570:2873585	attR	NA	NA	NA	NA
WP_080708285.1\|2875042_2878027_-	ATP-binding protein	A0A1B5FPD5	Escherichia_phage	1.7e-263	79.4

DBSCAN-SWA_5

2886323 : 2933412

Cronobacter_phage(32.0%)

integrase,tRNA,protease,tail,terminase,portal,capsid,head

attL 2878304:2878318|attR 2912475:2912489

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2878304:2878318	attL	NA	NA	NA	NA
WP_043135173.1\|2886323_2887649_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_043135175.1\|2887599_2888868_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_043135177.1\|2889154_2889469_-	hypothetical protein	NA	NA	NA	NA
WP_000795663.1\|2889488_2889695_-	AlpA family transcriptional regulator	A0A0R6PGY4	Moraxella_phage	8.5e-05	41.1
WP_043135179.1\|2889972_2890818_-	hypothetical protein	NA	NA	NA	NA
WP_039291343.1\|2891165_2891657_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	7.1e-34	40.9
WP_039291342.1\|2891653_2892127_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.9e-40	58.5
WP_039291341.1\|2892237_2892942_-\|terminase	terminase	F1BUM0	Cronobacter_phage	4.3e-72	58.8
WP_039291340.1\|2892944_2893952_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	3.7e-93	53.7
WP_039291339.1\|2893981_2895040_-\|capsid	GPO family capsid scaffolding protein	F1BUM4	Cronobacter_phage	3.8e-32	46.1
WP_039291337.1\|2895215_2897027_+	hypothetical protein	F1BUM5	Cronobacter_phage	2.3e-186	54.5
WP_039291335.1\|2897023_2898079_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	8.2e-120	59.8
WP_080708286.1\|2898126_2898402_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	5.2e-26	59.5
WP_039291331.1\|2898473_2898884_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_039291330.1\|2898893_2899178_-	hypothetical protein	NA	NA	NA	NA
WP_043135180.1\|2899507_2902042_-	replication endonuclease	A0A1S6L028	Salmonella_phage	3.6e-129	37.3
WP_080708287.1\|2903058_2903961_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	1.9e-93	61.0
WP_043135181.1\|2903957_2904191_-	DUF2732 domain-containing protein	F1BUS3	Erwinia_phage	2.7e-07	46.7
WP_043135182.1\|2904261_2904624_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	6.2e-19	49.2
WP_043135183.1\|2904629_2904830_-	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_043135184.1\|2904826_2905027_-	hypothetical protein	NA	NA	NA	NA
WP_043135185.1\|2905023_2905386_-	hypothetical protein	Q1JS26	Enterobacteria_phage	9.9e-33	67.0
WP_043135186.1\|2905494_2905794_+	helix-turn-helix transcriptional regulator	Q1JS29	Enterobacteria_phage	1.0e-38	77.8
WP_043135187.1\|2905860_2906847_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	1.9e-142	74.1
WP_051623288.1\|2906887_2907685_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	6.0e-22	26.2
WP_039291327.1\|2907795_2909364_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA
WP_039291325.1\|2909374_2910484_-	DUF917 domain-containing protein	NA	NA	NA	NA
WP_039291323.1\|2910536_2911844_-	cytosine permease	NA	NA	NA	NA
WP_039291321.1\|2912117_2913059_+	LysR family transcriptional regulator	NA	NA	NA	NA
2912475:2912489	attR	NA	NA	NA	NA
WP_039291320.1\|2913044_2914199_-	MFS transporter	NA	NA	NA	NA
WP_011094188.1\|2914513_2915809_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-95	53.4
WP_039291319.1\|2915912_2917256_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	4.8e-80	40.6
WP_039291318.1\|2917263_2917875_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_039291315.1\|2918087_2921498_-	DNA translocase FtsK 4TM domain-containing protein	A0A218M9A2	Mycobacterium_phage	3.5e-87	48.0
WP_011094192.1\|2921612_2922107_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_039291314.1\|2922691_2923654_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.1e-62	44.4
WP_039291313.1\|2923890_2925657_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.7e-19	22.1
WP_039291312.1\|2925656_2927396_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A285PWH2	Cedratvirus	1.3e-16	28.3
WP_039291306.1\|2927429_2928134_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_002211347.1\|2928249_2928468_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_039291301.1\|2928608_2930075_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_011094198.1\|2930066_2930546_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_011094199.1\|2930788_2933062_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	8.4e-170	42.8
WP_011094200.1\|2933091_2933412_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	9.1e-14	44.4

DBSCAN-SWA_6

3713381 : 3718794

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011094848.1\|3713381_3713621_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	4.5e-18	58.1
WP_011094849.1\|3713630_3714038_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A220BYR7	Staphylococcus_phage	2.3e-06	26.5
WP_011094850.1\|3714034_3716182_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	5.8e-205	50.3
WP_011094851.1\|3716206_3717169_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	2.3e-137	72.9
WP_011094852.1\|3717536_3718274_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.9e-38	38.0
WP_162014380.1\|3718227_3718794_+	ribonuclease HI	J9Q745	Salmonella_phage	1.3e-47	56.7

DBSCAN-SWA_7

3751043 : 3829539

Brevibacillus_phage(18.18%)

tRNA,transposase,plate,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039293212.1\|3751043_3753671_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.3e-78	38.5
WP_039293215.1\|3753808_3754297_-	recombination regulator RecX	NA	NA	NA	NA
WP_011094881.1\|3754342_3755416_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	2.2e-112	61.6
WP_039293219.1\|3755523_3756018_-	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	2.9e-27	46.1
WP_011094883.1\|3756253_3756589_-	hypothetical protein	NA	NA	NA	NA
WP_011094884.1\|3757068_3757557_+	SRPBCC family protein	NA	NA	NA	NA
WP_011094885.1\|3757639_3758314_+	MarC family NAAT transporter	NA	NA	NA	NA
WP_039293223.1\|3760362_3761559_-	MFS transporter	NA	NA	NA	NA
WP_011094888.1\|3761680_3762562_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011094889.1\|3762778_3763414_+	glutaredoxin 2	NA	NA	NA	NA
WP_011094890.1\|3763512_3763935_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_011094891.1\|3764066_3765407_-	glycosyltransferase	NA	NA	NA	NA
WP_039293227.1\|3765418_3766270_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_039295182.1\|3766340_3767306_-	isocyanide synthase family protein	NA	NA	NA	NA
WP_011094897.1\|3768569_3768854_-	hypothetical protein	NA	NA	NA	NA
WP_011094900.1\|3769958_3770243_-	hypothetical protein	NA	NA	NA	NA
WP_080641355.1\|3770247_3770562_-	hypothetical protein	NA	NA	NA	NA
WP_039293231.1\|3771602_3772628_-	site-specific tyrosine recombinase XerC	A0A0K2CP59	Brevibacillus_phage	1.6e-14	25.9
WP_155268229.1\|3772657_3775549_-	toprim domain-containing protein	A0A1S5REW9	Helicobacter_phage	1.4e-23	24.3
WP_011094905.1\|3775654_3776056_+	helix-turn-helix domain-containing protein	A0A139ZPK3	Marinitoga_camini_virus	3.3e-05	42.1
WP_011094906.1\|3776133_3776463_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA
WP_039293234.1\|3776459_3776804_+	type I addiction module toxin, SymE family	NA	NA	NA	NA
WP_039293235.1\|3776865_3777105_-	hypothetical protein	NA	NA	NA	NA
WP_071843038.1\|3777148_3777481_-	TNT domain-containing protein	NA	NA	NA	NA
WP_039293240.1\|3778509_3779532_-	site-specific tyrosine recombinase XerC	A0A0K2CP59	Brevibacillus_phage	3.1e-15	26.6
WP_039293243.1\|3779577_3782475_-	toprim domain-containing protein	A0A1S5REW9	Helicobacter_phage	2.2e-21	24.1
WP_039289056.1\|3782627_3782999_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039293246.1\|3783076_3783301_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA
WP_039293249.1\|3783394_3783682_-	hypothetical protein	NA	NA	NA	NA
WP_011094931.1\|3788513_3789431_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_011094932.1\|3789427_3790384_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_080708294.1\|3790552_3791251_-	hypothetical protein	NA	NA	NA	NA
WP_039293252.1\|3791316_3792015_-	hypothetical protein	NA	NA	NA	NA
WP_011094935.1\|3792095_3793469_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_011094936.1\|3793478_3795515_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	2.1e-18	41.1
WP_039293256.1\|3795697_3796216_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_039293260.1\|3796765_3798121_-	sel1 repeat family protein	NA	NA	NA	NA
WP_039293263.1\|3798149_3799586_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_039293266.1\|3799635_3803133_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_039293269.1\|3803157_3804576_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_039293272.1\|3804587_3805148_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_039293282.1\|3805147_3806701_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_011094944.1\|3806703_3809301_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	3.8e-94	30.7
WP_011094945.1\|3809314_3810091_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_011094946.1\|3810106_3811444_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_039293285.1\|3811446_3811968_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_039293287.1\|3811967_3813188_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_011094949.1\|3813190_3814189_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_011094950.1\|3814152_3815919_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_011094951.1\|3815921_3816353_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_039293295.1\|3816358_3817837_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_011094953.1\|3817868_3818372_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_039293298.1\|3819440_3820844_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_039293299.1\|3820840_3823984_-	multidrug efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.7e-56	21.7
WP_039293301.1\|3824066_3825239_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_039295190.1\|3825428_3826001_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_039293303.1\|3826298_3826844_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_039293305.1\|3827280_3827772_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039289737.1\|3828507_3829539_+\|transposase	IS630-like element ISPeat1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

4375653 : 4435190

Burkholderia_phage(35.0%)

integrase,tRNA,transposase,tail,holin,plate,capsid

attL 4367028:4367044|attR 4411393:4411409

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4367028:4367044	attL	NA	NA	NA	NA
WP_011095481.1\|4375653_4379337_-	methionine synthase	A0A140XBC7	Dickeya_phage	2.0e-24	81.0
WP_011095195.1\|4379586_4379979_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.8e-27	52.3
WP_011095196.1\|4379975_4380398_-	regulatory protein GemA	Q6QIE7	Burkholderia_phage	3.5e-29	49.6
WP_011095197.1\|4380375_4380576_-	hypothetical protein	NA	NA	NA	NA
WP_039293926.1\|4380572_4381040_-	hypothetical protein	NA	NA	NA	NA
WP_039295280.1\|4381023_4381320_-	hypothetical protein	NA	NA	NA	NA
WP_039295283.1\|4381413_4381998_-	DUF3164 family protein	A0A2D1GNM4	Pseudomonas_phage	1.6e-69	66.0
WP_011095201.1\|4382034_4382304_-	hypothetical protein	NA	NA	NA	NA
WP_011095202.1\|4382331_4382589_-	phage-like protein	NA	NA	NA	NA
WP_011095203.1\|4382591_4383743_-	AAA family ATPase	A4JWN1	Burkholderia_virus	5.8e-119	59.9
WP_011095204.1\|4383752_4385522_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	1.3e-231	69.6
WP_011095205.1\|4385531_4386440_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	5.1e-78	57.2
WP_011095206.1\|4386449_4386755_-	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	1.1e-24	59.0
WP_011095207.1\|4386807_4386996_-	DNA-binding protein	A0A0S4L0D0	Pseudomonas_phage	2.3e-17	76.8
WP_011095208.1\|4387087_4387504_+	helix-turn-helix domain-containing protein	Q5ZQZ8	Pseudomonas_phage	1.2e-13	55.6
WP_011095209.1\|4387522_4388059_+	hypothetical protein	NA	NA	NA	NA
WP_011095210.1\|4388093_4389038_+	hypothetical protein	NA	NA	NA	NA
WP_011095211.1\|4389157_4390165_+	nucleoid-associated protein	A0A291AUQ0	Sinorhizobium_phage	7.2e-57	36.3
WP_011095212.1\|4390167_4391349_+	membrane protein	A0A291AUQ1	Sinorhizobium_phage	2.0e-45	31.5
WP_011095213.1\|4391496_4391841_+\|holin	putative holin	Q6QIC8	Burkholderia_phage	2.7e-19	51.8
WP_011095214.1\|4391843_4392491_+	transglycosylase SLT domain-containing protein	Q6QIC7	Burkholderia_phage	2.2e-62	59.3
WP_011095215.1\|4392474_4393146_+	hypothetical protein	NA	NA	NA	NA
WP_011095216.1\|4393145_4393478_+	hypothetical protein	Q5ZQY8	Pseudomonas_phage	3.6e-21	45.7
WP_011095217.1\|4393470_4393782_+	hypothetical protein	Q5ZQY7	Pseudomonas_phage	7.2e-32	60.0
WP_011095218.1\|4393783_4394329_+	DUF3486 family protein	A4JWJ3	Burkholderia_virus	3.9e-57	65.4
WP_011095219.1\|4394325_4395861_+	hypothetical protein	A4JWJ4	Burkholderia_virus	2.3e-179	62.6
WP_011095220.1\|4395860_4397354_+	DUF935 domain-containing protein	Q6QIC0	Burkholderia_phage	1.3e-171	60.2
WP_011095221.1\|4397334_4398156_+\|capsid	minor capsid protein	Q6QIB9	Burkholderia_phage	2.7e-94	59.5
WP_011095222.1\|4398152_4398602_+	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	4.7e-24	41.8
WP_011095223.1\|4398797_4399907_+	peptidase	A4JWJ9	Burkholderia_virus	3.3e-95	51.4
WP_011095224.1\|4399943_4400879_+	hypothetical protein	A4JWK0	Burkholderia_virus	2.2e-63	43.5
WP_011095225.1\|4400889_4401228_+	DUF2190 family protein	Q6QIB4	Burkholderia_phage	7.1e-17	52.3
WP_011095226.1\|4401230_4401677_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	3.8e-34	53.0
WP_011095227.1\|4401676_4402144_+	Gp37 family protein	Q6QIB2	Burkholderia_phage	2.5e-36	50.3
WP_011095228.1\|4402140_4402365_+	hypothetical protein	NA	NA	NA	NA
WP_011095229.1\|4402354_4403782_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	1.0e-205	75.1
WP_011095230.1\|4403781_4404306_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	3.9e-70	68.4
WP_011095231.1\|4404312_4404513_+	hypothetical protein	K7PHC3	Enterobacterial_phage	2.7e-16	66.1
WP_011095232.1\|4404653_4404956_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_164477415.1\|4404939_4405059_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_039293937.1\|4405030_4405300_-	hypothetical protein	NA	NA	NA	NA
WP_011095233.1\|4405342_4407814_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.0e-165	40.7
WP_011095234.1\|4407813_4408698_+\|tail	phage tail protein	Q6QIA4	Burkholderia_phage	8.3e-49	44.2
WP_011095235.1\|4408694_4408910_+\|tail	tail protein X	NA	NA	NA	NA
WP_011095236.1\|4408897_4410043_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	6.9e-88	51.2
WP_011095237.1\|4410039_4410633_+\|plate	phage baseplate assembly protein V	Q6QIA1	Burkholderia_phage	5.2e-23	43.9
WP_011095238.1\|4410659_4411508_+	hypothetical protein	NA	NA	NA	NA
4411393:4411409	attR	NA	NA	NA	NA
WP_011095239.1\|4411573_4411921_+	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	1.2e-32	61.1
WP_011095240.1\|4411911_4413018_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	3.3e-95	52.6
WP_011095241.1\|4413010_4413586_+\|tail	phage tail protein	A4JWL7	Burkholderia_virus	4.9e-58	62.2
WP_011095242.1\|4413586_4415149_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	6.1e-79	42.4
WP_011095243.1\|4415148_4415766_+\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	4.6e-30	38.7
WP_011095482.1\|4415970_4416801_+	glyoxylate bypass operon transcriptional repressor IclR	NA	NA	NA	NA
WP_039293944.1\|4417096_4418872_-	bifunctional isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA
WP_011095484.1\|4418921_4420229_-	isocitrate lyase	NA	NA	NA	NA
WP_011095485.1\|4420260_4421859_-	malate synthase A	NA	NA	NA	NA
WP_039293947.1\|4422143_4423073_-	homoserine O-succinyltransferase	NA	NA	NA	NA
WP_011095487.1\|4429227_4429776_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_011095488.1\|4429760_4430018_-	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_011095489.1\|4430014_4430842_-	shikimate dehydrogenase	NA	NA	NA	NA
WP_011095490.1\|4430861_4431980_-	L-threonylcarbamoyladenylate synthase type 1 TsaC	A0A291ATS8	Pandoravirus	1.7e-14	28.2
WP_011095491.1\|4432000_4432474_-	DUF494 domain-containing protein	NA	NA	NA	NA
WP_043135331.1\|4432445_4433561_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_011095493.1\|4433706_4434216_+	peptide deformylase	E3SLL2	Synechococcus_phage	1.2e-15	37.1
WP_011095494.1\|4434242_4435190_+\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA

DBSCAN-SWA_9

4483813 : 4492489

Dickeya_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011095541.1\|4483813_4484938_+	polysaccharide lyase	A0A140XB77	Dickeya_phage	1.3e-54	71.7
WP_011095542.1\|4485605_4486730_+	polysaccharide lyase	A0A140XB77	Dickeya_phage	2.3e-56	72.5
WP_011095543.1\|4487315_4488440_+	polysaccharide lyase	A0A140XB77	Dickeya_phage	3.9e-59	77.5
WP_039294001.1\|4488608_4489886_+	pectate lyase	A0A1B1IPS8	uncultured_Mediterranean_phage	7.6e-35	34.7
WP_011095545.1\|4489971_4490541_-	peptidylprolyl isomerase A	A0A1B1IVS0	uncultured_Mediterranean_phage	5.2e-12	36.5
WP_039294003.1\|4490843_4491653_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-29	38.9
WP_039294005.1\|4491664_4492489_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-13	30.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007744

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection