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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP007659 Staphylococcus aureus subsp. aureus strain H-EMRSA-15 chromosome, complete genome 6 crisprs cas3,DEDDh,RT,DinG,csa3,WYL 3 0 13 0

Results visualization

1. NZ_CP007659
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007659_1 639808-639895 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007659_2 924029-924113 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007659_3 1993526-1993615 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007659_4 2321958-2322082 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007659_5 2564456-2564539 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007659_6 2690280-2690361 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP007659_3 3.1|1993558|26|NZ_CP007659|CRISPRCasFinder 1993558-1993583 26 NZ_CP007659.1 809738-809763 0 1.0
NZ_CP007659_3 3.1|1993558|26|NZ_CP007659|CRISPRCasFinder 1993558-1993583 26 NZ_CP007659.1 1995018-1995043 0 1.0
NZ_CP007659_3 3.1|1993558|26|NZ_CP007659|CRISPRCasFinder 1993558-1993583 26 NZ_CP007659.1 2348280-2348305 0 1.0
NZ_CP007659_1 1.1|639838|28|NZ_CP007659|CRISPRCasFinder 639838-639865 28 NZ_CP007659.1 1993617-1993644 1 0.964
NZ_CP007659_6 6.1|2690304|34|NZ_CP007659|CRISPRCasFinder 2690304-2690337 34 NZ_CP007659.1 1023728-1023761 2 0.941

1. spacer 3.1|1993558|26|NZ_CP007659|CRISPRCasFinder matches to position: 809738-809763, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

2. spacer 3.1|1993558|26|NZ_CP007659|CRISPRCasFinder matches to position: 1995018-1995043, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

3. spacer 3.1|1993558|26|NZ_CP007659|CRISPRCasFinder matches to position: 2348280-2348305, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

4. spacer 1.1|639838|28|NZ_CP007659|CRISPRCasFinder matches to position: 1993617-1993644, mismatch: 1, identity: 0.964

ggtgtgggccccaacacagagaatttca	CRISPR spacer
ggtgtgggccccaacatagagaatttca	Protospacer
****************.***********

5. spacer 6.1|2690304|34|NZ_CP007659|CRISPRCasFinder matches to position: 1023728-1023761, mismatch: 2, identity: 0.941

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagaggaattggatttccaat	Protospacer
******************.*********.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 406688 : 423657 19 Staphylococcus_phage(40.0%) terminase,integrase,capsid attL 409084:409099|attR 426695:426710
DBSCAN-SWA_2 742305 : 750126 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_3 762099 : 774366 11 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 950489 : 1005370 53 Lactococcus_phage(25.0%) tRNA,transposase,bacteriocin,protease NA
DBSCAN-SWA_5 1025082 : 1033555 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1497902 : 1583836 107 Staphylococcus_phage(78.48%) tail,terminase,tRNA,protease,integrase,head,capsid,holin,transposase,portal,plate attL 1508098:1508115|attR 1584391:1584408
DBSCAN-SWA_7 1643448 : 1651778 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_8 1721225 : 1730268 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_9 1853225 : 1865964 6 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_10 1869125 : 1878129 9 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_11 1888048 : 1909499 22 Staphylococcus_phage(89.47%) transposase NA
DBSCAN-SWA_12 1916471 : 1924152 7 Staphylococcus_phage(66.67%) transposase NA
DBSCAN-SWA_13 2019032 : 2105137 109 Staphylococcus_phage(87.34%) tail,terminase,protease,portal,head,capsid,holin,transposase,integrase attL 2076206:2076223|attR 2103124:2103141
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage