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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP007519 Trueperella pyogenes strain TP6375 chromosome, complete genome 3 crisprs WYL,DEDDh,DinG,csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2 0 6 3 0

Results visualization

1. NZ_CP007519
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007519_1 2061489-2063529 TypeI-E I-E
33 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007519_2 2084512-2084610 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007519_3 2084710-2084888 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP007519_3 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder 2084841-2084865 25 NZ_CP050095 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence 199540-199564 4 0.84
NZ_CP007519_3 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder 2084841-2084865 25 NC_008381 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence 410084-410108 4 0.84
NZ_CP007519_3 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder 2084841-2084865 25 NZ_CP053443 Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence 169650-169674 4 0.84
NZ_CP007519_3 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder 2084841-2084865 25 NZ_CP054028 Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence 220289-220313 4 0.84
NZ_CP007519_3 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder 2084841-2084865 25 MT104473 Pseudomonas phage MR13, complete genome 26130-26154 4 0.84
NZ_CP007519_3 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder 2084841-2084865 25 MT104475 Pseudomonas phage MR15, complete genome 26188-26212 4 0.84
NZ_CP007519_3 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder 2084841-2084865 25 KJ507100 Pseudomonas phage phiPSA1, complete genome 26922-26946 4 0.84
NZ_CP007519_3 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder 2084841-2084865 25 NZ_CP021032 Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence 140096-140120 4 0.84
NZ_CP007519_3 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder 2084841-2084865 25 NC_011368 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence 152463-152487 4 0.84
NZ_CP007519_1 1.23|2062859|33|NZ_CP007519|PILER-CR,CRISPRCasFinder,CRT 2062859-2062891 33 NC_017805 Deinococcus gobiensis I-0 plasmid P1, complete sequence 159273-159305 6 0.818
NZ_CP007519_1 1.23|2062859|33|NZ_CP007519|PILER-CR,CRISPRCasFinder,CRT 2062859-2062891 33 NZ_CP029356 Azospirillum sp. CFH 70021 plasmid unnamed1 226492-226524 7 0.788
NZ_CP007519_1 1.29|2063225|33|NZ_CP007519|PILER-CR,CRISPRCasFinder,CRT 2063225-2063257 33 NZ_CP042262 Litoreibacter sp. LN3S51 plasmid unnamed1, complete sequence 29383-29415 9 0.727
NZ_CP007519_1 1.30|2063286|33|NZ_CP007519|PILER-CR,CRISPRCasFinder,CRT 2063286-2063318 33 NZ_CP048428 Rhizobium daejeonense strain KACC 13094 plasmid unnamed4, complete sequence 24469-24501 9 0.727
NZ_CP007519_1 1.31|2063347|33|NZ_CP007519|PILER-CR,CRISPRCasFinder,CRT 2063347-2063379 33 NZ_CP042262 Litoreibacter sp. LN3S51 plasmid unnamed1, complete sequence 29383-29415 9 0.727
NZ_CP007519_1 1.32|2063408|33|NZ_CP007519|PILER-CR,CRISPRCasFinder,CRT 2063408-2063440 33 NZ_CP048428 Rhizobium daejeonense strain KACC 13094 plasmid unnamed4, complete sequence 24469-24501 9 0.727

1. spacer 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder matches to NZ_CP050095 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
cccccaagccgaacgagcggcagcc	Protospacer
. *************** ******.

2. spacer 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder matches to NC_008381 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
ctcccaagccgaacgagcggcagcc	Protospacer
. *************** ******.

3. spacer 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder matches to NZ_CP053443 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
cccccaagccgaacgagcggcagcc	Protospacer
. *************** ******.

4. spacer 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
cgccgaagccgaacgagcggcagcc	Protospacer
.*** ************ ******.

5. spacer 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder matches to MT104473 (Pseudomonas phage MR13, complete genome) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
agcccaagccgaacgcgaagcagca	Protospacer
 ************** **.***** 

6. spacer 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder matches to MT104475 (Pseudomonas phage MR15, complete genome) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
agcccaagccgaacgcgaagcagca	Protospacer
 ************** **.***** 

7. spacer 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder matches to KJ507100 (Pseudomonas phage phiPSA1, complete genome) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
agcccaagccgaacgcgaagcagca	Protospacer
 ************** **.***** 

8. spacer 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
cgccgaagccgaacgagcggcagcc	Protospacer
.*** ************ ******.

9. spacer 3.3|2084841|25|NZ_CP007519|CRISPRCasFinder matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 4, identity: 0.84

tgcccaagccgaacgagaggcagct	CRISPR spacer
cgccgaagccgaacgagcggcagcc	Protospacer
.*** ************ ******.

10. spacer 1.23|2062859|33|NZ_CP007519|PILER-CR,CRISPRCasFinder,CRT matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 6, identity: 0.818

gcgtacgc-cacggtggagggcgacgcctgcttc	CRISPR spacer
-ctaatgctcacggtggagggcgacgccaccttc	Protospacer
 *  *.** *******************  ****

11. spacer 1.23|2062859|33|NZ_CP007519|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 7, identity: 0.788

gcgtacgccacggtggagggcgacgcctgcttc	CRISPR spacer
gtcgacggcacggtggtgggcgacgcctgggtc	Protospacer
*.  *** ******** ************  **

12. spacer 1.29|2063225|33|NZ_CP007519|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042262 (Litoreibacter sp. LN3S51 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

cctggaagacgccgacctgtggggtgctgacct	CRISPR spacer
gatccgtgacgccgacctgtggcgtgccgacat	Protospacer
  *  . *************** ****.*** *

13. spacer 1.30|2063286|33|NZ_CP007519|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048428 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.727

taaccactggtgctgcgagcctggccaagcctc	CRISPR spacer
ttaccactggtgctgagagcctgcccgcagatt	Protospacer
* ************* ******* **. .  *.

14. spacer 1.31|2063347|33|NZ_CP007519|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042262 (Litoreibacter sp. LN3S51 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

cctggaagacgccgacctgtggggtgctgacct	CRISPR spacer
gatccgtgacgccgacctgtggcgtgccgacat	Protospacer
  *  . *************** ****.*** *

15. spacer 1.32|2063408|33|NZ_CP007519|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048428 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.727

taaccactggtgctgcgagcctggccaagcctc	CRISPR spacer
ttaccactggtgctgagagcctgcccgcagatt	Protospacer
* ************* ******* **. .  *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 669044 : 687411 17 Erysipelothrix_phage(66.67%) holin,tail,head,capsid,protease,portal NA
DBSCAN-SWA_2 693380 : 701945 9 Erysipelothrix_phage(28.57%) NA NA
DBSCAN-SWA_3 929824 : 943875 13 Streptomyces_phage(11.11%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage